AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0101810

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0101810 MtrunA17_Chr1g0154011 100.000 148 0 0 1 148 1 148 1.22e-109 307
Msa0101810 MtrunA17_Chr7g0275361 92.568 148 11 0 1 148 1 148 4.04e-103 291
Msa0101810 MtrunA17_Chr3g0108261 91.892 148 12 0 1 148 1 148 4.66e-103 291
Msa0101810 MtrunA17_Chr5g0432831 91.892 148 12 0 1 148 1 148 4.66e-103 291
Msa0101810 MtrunA17_Chr8g0369311 90.541 148 14 0 1 148 57 204 9.57e-101 287
Msa0101810 MtrunA17_Chr4g0037011 88.514 148 17 0 1 148 1 148 5.46e-100 283
Msa0101810 MtrunA17_Chr8g0378601 51.724 145 70 0 2 146 23 167 1.48e-55 171
Msa0101810 MtrunA17_Chr2g0316201 48.252 143 74 0 4 146 8 150 9.30e-47 149
Msa0101810 MtrunA17_Chr2g0316211 47.887 142 74 0 5 146 9 150 1.13e-45 146
Msa0101810 MtrunA17_Chr8g0362321 46.575 146 73 1 2 142 5 150 1.92e-45 145
Msa0101810 MtrunA17_Chr4g0060351 45.890 146 74 1 2 142 5 150 1.08e-44 143
Msa0101810 MtrunA17_Chr3g0131871 49.306 144 71 2 5 146 6 149 6.49e-42 137
Msa0101810 MtrunA17_Chr1g0199951 44.776 134 72 2 3 135 43 175 3.06e-34 118
Msa0101810 MtrunA17_Chr3g0139901 40.816 147 83 3 5 147 7 153 3.16e-34 117
Msa0101810 MtrunA17_Chr4g0038891 42.969 128 73 0 4 131 35 162 3.61e-33 115
Msa0101810 MtrunA17_Chr5g0396451 41.406 128 75 0 4 131 35 162 1.48e-31 110
Msa0101810 MtrunA17_Chr4g0053191 38.158 152 87 2 1 145 4 155 9.06e-31 108
Msa0101810 MtrunA17_Chr5g0401831 34.868 152 92 2 1 145 4 155 1.46e-27 100
Msa0101810 MtrunA17_Chr5g0403591 36.765 136 83 2 5 139 33 166 3.29e-27 100
Msa0101810 MtrunA17_Chr4g0031181 34.815 135 74 2 15 135 18 152 1.54e-26 97.8
Msa0101810 MtrunA17_Chr8g0348701 34.959 123 78 2 26 146 25 147 3.25e-25 95.1
Msa0101810 MtrunA17_Chr7g0254701 34.965 143 93 0 4 146 13 155 3.46e-25 97.1
Msa0101810 MtrunA17_Chr8g0387131 38.182 110 66 2 39 146 38 147 2.68e-24 92.4
Msa0101810 MtrunA17_Chr2g0328001 33.333 144 82 2 15 144 18 161 4.99e-24 91.7
Msa0101810 MtrunA17_Chr4g0059291 33.333 123 80 2 26 146 25 147 1.98e-23 90.5
Msa0101810 MtrunA17_Chr8g0372391 40.777 103 59 2 1 102 15 116 1.70e-19 79.7
Msa0101810 MtrunA17_Chr4g0068301 34.188 117 71 3 2 114 11 125 1.23e-17 77.4
Msa0101810 MtrunA17_Chr5g0404931 37.864 103 62 2 1 102 15 116 1.99e-17 74.3
Msa0101810 MtrunA17_Chr8g0376111 36.066 122 68 3 4 115 43 164 5.46e-17 75.9
Msa0101810 MtrunA17_Chr8g0345331 34.188 117 68 3 4 115 8 120 3.95e-16 72.4
Msa0101810 MtrunA17_Chr7g0233631 36.066 122 68 3 4 115 38 159 4.33e-16 73.6
Msa0101810 MtrunA17_Chr7g0233611 36.066 122 68 3 4 115 38 159 9.45e-16 72.4
Msa0101810 MtrunA17_Chr7g0222941 30.081 123 76 3 3 115 90 212 3.67e-14 67.4
Msa0101810 MtrunA17_Chr4g0047301 28.667 150 94 4 4 143 672 818 3.23e-13 65.9
Msa0101810 MtrunA17_Chr4g0045101 32.787 122 72 3 4 115 37 158 3.84e-13 65.1
Msa0101810 MtrunA17_Chr2g0282211 27.815 151 96 4 3 143 681 828 7.99e-13 64.7
Msa0101810 MtrunA17_Chr1g0186291 29.293 99 56 2 43 140 30 115 1.41e-12 61.2
Msa0101810 MtrunA17_Chr8g0376201 29.787 141 88 4 3 133 192 331 6.91e-12 62.0
Msa0101810 MtrunA17_Chr2g0317631 29.268 123 77 3 3 115 306 428 8.49e-12 61.6
Msa0101810 MtrunA17_Chr1g0198021 27.642 123 79 3 3 115 137 259 2.23e-11 60.5
Msa0101810 MtrunA17_Chr1g0211131 32.609 92 52 3 34 115 853 944 6.01e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0101810 AT1G64230.2 91.216 148 13 0 1 148 1 148 4.88e-103 291
Msa0101810 AT1G64230.1 91.216 148 13 0 1 148 1 148 4.88e-103 291
Msa0101810 AT5G53300.2 91.892 148 12 0 1 148 1 148 1.39e-102 290
Msa0101810 AT5G53300.4 91.892 148 12 0 1 148 1 148 1.39e-102 290
Msa0101810 AT5G53300.1 91.892 148 12 0 1 148 1 148 1.39e-102 290
Msa0101810 AT5G41700.5 91.216 148 13 0 1 148 1 148 1.60e-102 290
Msa0101810 AT5G41700.2 91.216 148 13 0 1 148 1 148 1.60e-102 290
Msa0101810 AT5G41700.1 91.216 148 13 0 1 148 1 148 1.60e-102 290
Msa0101810 AT4G27960.1 91.216 148 13 0 1 148 1 148 3.33e-102 289
Msa0101810 AT4G27960.2 91.216 148 13 0 1 148 31 178 1.39e-101 288
Msa0101810 AT3G08690.2 89.189 148 16 0 1 148 1 148 3.13e-100 284
Msa0101810 AT3G08690.1 89.189 148 16 0 1 148 1 148 3.13e-100 284
Msa0101810 AT5G56150.1 88.514 148 17 0 1 148 1 148 5.36e-100 283
Msa0101810 AT5G41700.4 89.933 149 14 1 1 148 1 149 1.05e-99 283
Msa0101810 AT1G64230.3 85.350 157 14 1 1 148 1 157 2.21e-98 280
Msa0101810 AT2G16740.1 85.714 147 21 0 1 147 1 147 9.44e-97 275
Msa0101810 AT1G64230.5 70.526 190 14 1 1 148 1 190 5.44e-94 270
Msa0101810 AT1G64230.4 70.526 190 14 1 1 148 1 190 5.44e-94 270
Msa0101810 AT3G08700.2 77.181 149 33 1 1 148 1 149 5.23e-86 248
Msa0101810 AT3G08700.1 77.181 149 33 1 1 148 1 149 5.23e-86 248
Msa0101810 AT5G41700.3 91.346 104 9 0 1 104 1 104 7.72e-70 207
Msa0101810 AT5G53300.3 88.991 109 10 1 1 107 1 109 6.15e-69 204
Msa0101810 AT5G56150.2 89.320 103 11 0 1 103 1 103 9.41e-68 201
Msa0101810 AT3G13550.1 48.276 145 75 0 2 146 37 181 2.66e-53 167
Msa0101810 AT1G16890.2 48.951 143 73 0 4 146 8 150 2.41e-47 150
Msa0101810 AT5G62540.1 51.880 133 64 0 2 134 5 137 9.41e-47 149
Msa0101810 AT1G78870.2 48.252 143 74 0 4 146 8 150 1.86e-46 148
Msa0101810 AT1G14400.1 46.575 146 73 1 2 142 5 150 4.42e-45 145
Msa0101810 AT1G14400.2 46.575 146 73 1 2 142 5 150 4.42e-45 145
Msa0101810 AT1G36340.2 47.619 147 76 1 2 148 9 154 6.96e-45 144
Msa0101810 AT1G36340.1 47.619 147 76 1 2 148 9 154 6.96e-45 144
Msa0101810 AT2G02760.1 45.890 146 74 1 2 142 5 150 1.05e-44 144
Msa0101810 AT2G02760.2 45.890 146 74 1 2 142 5 150 1.05e-44 144
Msa0101810 AT2G02760.4 45.890 146 74 1 2 142 5 150 1.05e-44 144
Msa0101810 AT2G02760.3 45.890 146 74 1 2 142 5 150 1.05e-44 144
Msa0101810 AT1G16890.3 46.711 152 72 1 4 146 8 159 1.42e-44 144
Msa0101810 AT3G13550.2 50.877 114 56 0 2 115 37 150 9.52e-43 139
Msa0101810 AT1G16890.1 52.174 115 55 0 32 146 3 117 8.86e-41 133
Msa0101810 AT1G78870.4 52.174 115 55 0 32 146 3 117 1.28e-40 132
Msa0101810 AT5G50870.1 46.528 144 75 2 5 146 6 149 6.01e-39 130
Msa0101810 AT1G78870.1 51.724 116 55 1 32 146 3 118 8.58e-39 128
Msa0101810 AT5G50870.2 43.226 155 75 3 5 146 6 160 1.61e-35 122
Msa0101810 AT3G24515.1 43.312 157 76 3 3 146 8 164 5.11e-35 125
Msa0101810 AT2G32790.1 47.333 150 70 4 2 146 30 175 1.36e-34 119
Msa0101810 AT5G25760.1 39.456 147 85 3 5 147 7 153 1.06e-32 113
Msa0101810 AT5G25760.2 39.456 147 85 3 5 147 7 153 1.06e-32 113
Msa0101810 AT3G24515.3 37.912 182 75 4 3 146 8 189 3.00e-32 119
Msa0101810 AT1G78870.3 46.667 105 56 0 4 108 8 112 4.20e-31 108
Msa0101810 AT3G57870.1 38.816 152 86 3 1 145 5 156 1.46e-30 108
Msa0101810 AT3G20060.1 41.406 128 75 0 4 131 39 166 2.51e-30 108
Msa0101810 AT1G50490.1 42.188 128 74 0 4 131 38 165 6.62e-30 107
Msa0101810 AT3G20060.2 42.017 119 67 1 13 131 5 121 1.11e-28 102
Msa0101810 AT2G46030.5 36.486 148 91 3 1 146 1 147 7.59e-28 102
Msa0101810 AT2G46030.1 36.486 148 91 3 1 146 1 147 7.59e-28 102
Msa0101810 AT2G46030.4 39.024 123 73 2 26 146 28 150 2.05e-27 101
Msa0101810 AT2G46030.2 39.024 123 73 2 26 146 28 150 2.05e-27 101
Msa0101810 AT2G46030.3 36.486 148 91 3 1 146 73 219 2.12e-27 102
Msa0101810 AT5G05080.2 37.063 143 90 0 4 146 13 155 2.74e-27 102
Msa0101810 AT5G05080.3 37.063 143 90 0 4 146 13 155 2.74e-27 102
Msa0101810 AT5G05080.1 37.063 143 90 0 4 146 13 155 2.74e-27 102
Msa0101810 AT5G05080.4 37.063 143 90 0 4 146 13 155 2.74e-27 102
Msa0101810 AT4G36800.2 38.686 137 79 4 5 139 34 167 2.78e-27 100
Msa0101810 AT4G36800.1 38.686 137 79 4 5 139 34 167 2.78e-27 100
Msa0101810 AT3G55380.1 36.296 135 72 2 15 135 19 153 8.44e-27 99.0
Msa0101810 AT1G63800.2 40.000 110 64 2 39 146 23 132 4.10e-25 94.7
Msa0101810 AT1G63800.1 40.000 110 64 2 39 146 38 147 4.43e-25 95.1
Msa0101810 AT5G41340.1 35.772 123 77 2 26 146 25 147 4.65e-25 95.1
Msa0101810 AT5G59300.1 34.028 144 81 2 15 144 18 161 1.48e-24 93.2
Msa0101810 AT3G46460.1 33.333 144 82 2 15 144 18 161 2.34e-24 92.8
Msa0101810 AT2G18600.1 35.036 137 84 4 5 139 35 168 3.90e-23 90.1
Msa0101810 AT2G18600.2 35.036 137 84 4 5 139 35 168 3.90e-23 90.1
Msa0101810 AT5G41340.2 38.462 104 62 2 45 146 9 112 2.30e-22 87.0
Msa0101810 AT3G17000.1 36.752 117 68 3 2 114 12 126 1.45e-19 83.2
Msa0101810 AT3G55380.2 28.402 169 73 3 15 135 19 187 2.36e-19 80.5
Msa0101810 AT1G75440.1 39.815 108 59 3 1 107 15 117 2.60e-18 77.0
Msa0101810 AT1G45050.1 38.835 103 61 2 1 102 15 116 9.46e-18 75.5
Msa0101810 AT5G42990.1 39.806 103 60 2 1 102 15 116 1.22e-17 75.1
Msa0101810 AT1G17280.9 35.043 117 67 3 4 115 8 120 3.99e-17 75.5
Msa0101810 AT1G17280.7 35.043 117 67 3 4 115 8 120 3.99e-17 75.5
Msa0101810 AT1G17280.6 35.043 117 67 3 4 115 8 120 3.99e-17 75.5
Msa0101810 AT1G17280.2 35.043 117 67 3 4 115 8 120 3.99e-17 75.5
Msa0101810 AT1G17280.5 35.043 117 67 3 4 115 8 120 3.99e-17 75.5
Msa0101810 AT1G17280.3 35.043 117 67 3 4 115 8 120 3.99e-17 75.5
Msa0101810 AT1G17280.1 35.043 117 67 3 4 115 8 120 3.99e-17 75.5
Msa0101810 AT1G17280.8 35.043 117 67 3 4 115 8 120 3.99e-17 75.5
Msa0101810 AT4G36410.1 37.037 108 62 3 1 107 15 117 5.73e-17 73.6
Msa0101810 AT5G50430.1 35.043 117 67 3 4 115 8 120 6.41e-17 75.1
Msa0101810 AT5G50430.2 35.043 117 67 3 4 115 8 120 6.41e-17 75.1
Msa0101810 AT3G46460.3 29.730 111 65 1 47 144 9 119 4.26e-16 70.1
Msa0101810 AT3G46460.2 29.730 111 65 1 47 144 9 119 4.26e-16 70.1
Msa0101810 AT1G17280.4 32.520 123 68 3 4 115 8 126 8.83e-16 72.0

Find 71 sgRNAs with CRISPR-Local

Find 306 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTACCTTTGGTGGCTTAAA+TGG 0.184645 1_3:-8468332 None:intergenic
AACCTTGGAGATGGAATCTT+AGG 0.258527 1_3:-8465817 None:intergenic
CTCCCATTGCTGTTGATGTT+AGG 0.317472 1_3:-8469123 None:intergenic
ATAAAACTTGGTTGTTGGTT+TGG 0.323051 1_3:-8469982 None:intergenic
GCGTCATTGTTCTATTATAT+AGG 0.361002 1_3:+8470039 Msa0101810:three_prime_UTR
TAAAACTTGGTTGTTGGTTT+GGG 0.363426 1_3:-8469981 None:intergenic
TTGTACATGTGGGCAATATC+AGG 0.375872 1_3:-8469728 None:intergenic
TCAGGCACCAAAGGATCATC+TGG 0.377413 1_3:-8469710 None:intergenic
CCTCCTGTGTCTTGCAGTGC+TGG 0.380892 1_3:+8467218 Msa0101810:CDS
GGTGGCTTAAATGGATAATC+TGG 0.389530 1_3:-8468323 None:intergenic
TGATTTGAACATATAGATAA+TGG 0.409991 1_3:-8470128 None:intergenic
GTCGGATAAAACTTGGTTGT+TGG 0.415903 1_3:-8469987 None:intergenic
AAGTTCTGTTAGCGAGAGAA+AGG 0.423440 1_3:-8465789 None:intergenic
TGAAACAGGTCTTCACCAAC+AGG 0.427366 1_3:-8468224 None:intergenic
TCCCATTGCTGTTGATGTTA+GGG 0.427658 1_3:-8469122 None:intergenic
TAGTAGCTTGCCAATGAAAC+AGG 0.428793 1_3:-8468238 None:intergenic
ACATATAGATAATGGTATAT+AGG 0.430215 1_3:-8470120 None:intergenic
TACTAGATAGTTACCTTTGG+TGG 0.430453 1_3:-8468341 None:intergenic
TCCTAACCCAGATGATCCTT+TGG 0.440007 1_3:+8469703 Msa0101810:CDS
ATTCCACTACATAAATTAAA+CGG 0.446686 1_3:+8470017 Msa0101810:three_prime_UTR
GGTATATAGGTTATGTAGTA+AGG 0.460900 1_3:-8470107 None:intergenic
ATGAGACTACTGCCCGGTCT+TGG 0.466598 1_3:+8469768 Msa0101810:CDS
TTGGTGAAGACCTGTTTCAT+TGG 0.470566 1_3:+8468228 Msa0101810:CDS
TCACTTAGTCGGATAAAACT+TGG 0.471898 1_3:-8469994 None:intergenic
ACGCATTACTAAGGAGTTGA+AGG 0.472891 1_3:+8467181 Msa0101810:CDS
ACCCTAACATCAACAGCAAT+GGG 0.488484 1_3:+8469121 Msa0101810:CDS
TCATTGGCAAGCTACTATCA+TGG 0.489308 1_3:+8468244 Msa0101810:CDS
CATATTTCTGAGTCCAAGAC+CGG 0.489374 1_3:-8469781 None:intergenic
CCGGGCAGTAGTCTCATACT+TGG 0.490655 1_3:-8469762 None:intergenic
GGCCTCAAAACGCATTACTA+AGG 0.503308 1_3:+8467172 Msa0101810:CDS
TTCATTAGGTTGAACTGCAA+TGG 0.505699 1_3:+8467151 Msa0101810:intron
ACAAATGCTTGTGGTTCTAA+AGG 0.508568 1_3:+8469816 Msa0101810:three_prime_UTR
ACGCCGTTTAATTTATGTAG+TGG 0.509779 1_3:-8470020 None:intergenic
TGTAGTGGAATTCACTTAGT+CGG 0.514363 1_3:-8470005 None:intergenic
ACCAAAGGATCATCTGGGTT+AGG 0.515230 1_3:-8469704 None:intergenic
AGGAATACACCACCAGCATA+AGG 0.516668 1_3:-8468281 None:intergenic
TATACTCATGCAGGCCCTGT+TGG 0.522486 1_3:+8468209 Msa0101810:intron
TGATATAGTGAATAATATAG+TGG 0.527348 1_3:-8470065 None:intergenic
CTTTGTCAGTCTTGTACATG+TGG 0.533650 1_3:-8469739 None:intergenic
ACATGGTAGAAACTCGACTT+AGG 0.539690 1_3:-8470151 None:intergenic
TCCTGCTCTTACTGTTTCGA+AGG 0.541092 1_3:+8469179 Msa0101810:CDS
ATCGAAGCAAACCTTGGAGA+TGG 0.543129 1_3:-8465826 None:intergenic
CACCCTAACATCAACAGCAA+TGG 0.544450 1_3:+8469120 Msa0101810:CDS
CATTGGCAAGCTACTATCAT+GGG 0.548045 1_3:+8468245 Msa0101810:CDS
GCAGAGAGCAAATTGACAGC+AGG 0.555230 1_3:-8469673 None:intergenic
GCAAGCTACTATCATGGGAC+CGG 0.562370 1_3:+8468250 Msa0101810:CDS
ACCTTGGAGATGGAATCTTA+GGG 0.563827 1_3:-8465816 None:intergenic
ACCCTAAGATTCCATCTCCA+AGG 0.564855 1_3:+8465815 Msa0101810:five_prime_UTR
AGTTCTGTTAGCGAGAGAAA+GGG 0.567493 1_3:-8465788 None:intergenic
GGCTTAAATGGATAATCTGG+TGG 0.570933 1_3:-8468320 None:intergenic
ACCTTCGAAACAGTAAGAGC+AGG 0.586563 1_3:-8469180 None:intergenic
CCGGCAGACAGTCCTTATGC+TGG 0.594140 1_3:+8468269 Msa0101810:CDS
AAAGGGAGCGATGCGTTGTG+AGG 0.599804 1_3:-8465771 None:intergenic
GTGGGAAGTGAATGGTCACT+AGG 0.600222 1_3:-8468301 None:intergenic
CCAGCATAAGGACTGTCTGC+CGG 0.604386 1_3:-8468269 None:intergenic
CATTGCTGTTGATGTTAGGG+TGG 0.612271 1_3:-8469119 None:intergenic
TGGGCAATATCAGGCACCAA+AGG 0.612823 1_3:-8469719 None:intergenic
TTATCCATTTAAGCCACCAA+AGG 0.622832 1_3:+8468328 Msa0101810:CDS
GCAGACAGTCCTTATGCTGG+TGG 0.624021 1_3:+8468272 Msa0101810:CDS
ATAATCTGGTGGGAAGTGAA+TGG 0.636084 1_3:-8468309 None:intergenic
GCTTAAATGGATAATCTGGT+GGG 0.637843 1_3:-8468319 None:intergenic
CAGGCACCAAAGGATCATCT+GGG 0.640642 1_3:-8469709 None:intergenic
TTGACATTCTGAAAGAGCAG+TGG 0.642055 1_3:+8469154 Msa0101810:CDS
CCAAGTATGAGACTACTGCC+CGG 0.645693 1_3:+8469762 Msa0101810:CDS
TTTGTCAGTCTTGTACATGT+GGG 0.652799 1_3:-8469738 None:intergenic
TGAACTAGCACAAATGCTTG+TGG 0.653162 1_3:+8469807 Msa0101810:exon
ATACCAGCACTGCAAGACAC+AGG 0.653347 1_3:-8467221 None:intergenic
CCAGCACTGCAAGACACAGG+AGG 0.655706 1_3:-8467218 None:intergenic
ATATTTCTGAGTCCAAGACC+GGG 0.658098 1_3:-8469780 None:intergenic
CAGCACTGCAAGACACAGGA+GGG 0.671340 1_3:-8467217 None:intergenic
GAAACAGGTCTTCACCAACA+GGG 0.724000 1_3:-8468223 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATATTTTTTGTTATAGAAA+TGG + chr1_3:8466320-8466339 Msa0101810:intron 10.0%
!! GTTTAAAGAAATATTATATT+TGG + chr1_3:8466534-8466553 Msa0101810:intron 10.0%
!!! GATATTTTATAATATGATTA+CGG + chr1_3:8466577-8466596 Msa0101810:intron 10.0%
!!! ATATTTTATAATATGATTAC+GGG + chr1_3:8466578-8466597 Msa0101810:intron 10.0%
!! AAAATTAAAAACTATTTGAT+GGG + chr1_3:8467851-8467870 Msa0101810:intron 10.0%
!!! AAAATTTTGAAAAGGATTTT+AGG + chr1_3:8466056-8466075 Msa0101810:intron 15.0%
!!! AAATTTTGAAAAGGATTTTA+GGG + chr1_3:8466057-8466076 Msa0101810:intron 15.0%
!! TTATATTTCGTTATAATTGT+GGG + chr1_3:8466797-8466816 Msa0101810:intron 15.0%
!! TTCACTTTAAATTAAGTAAA+TGG - chr1_3:8466954-8466973 None:intergenic 15.0%
!!! CATCAAATAGTTTTTAATTT+TGG - chr1_3:8467852-8467871 None:intergenic 15.0%
!! CAAAATTAAAAACTATTTGA+TGG + chr1_3:8467850-8467869 Msa0101810:intron 15.0%
!! TATAATATATAAAGATAACG+AGG - chr1_3:8468193-8468212 None:intergenic 15.0%
!! ATCTATACAACAAATATTAA+AGG - chr1_3:8468897-8468916 None:intergenic 15.0%
!!! TGTTATGAAAATAATGTTTT+TGG + chr1_3:8469034-8469053 Msa0101810:intron 15.0%
!!! AATATTTCATTTTCTATACT+TGG + chr1_3:8469414-8469433 Msa0101810:intron 15.0%
!!! GGAATAAAATTTTCATTCTA+GGG + chr1_3:8465923-8465942 Msa0101810:intron 20.0%
!!! TTTTGGTGAAAATTTTGAAA+AGG + chr1_3:8466048-8466067 Msa0101810:intron 20.0%
!! TATAACATGTAACTTAAGTT+GGG - chr1_3:8466782-8466801 None:intergenic 20.0%
!! ATATAACATGTAACTTAAGT+TGG - chr1_3:8466783-8466802 None:intergenic 20.0%
!! GTTATATTTCGTTATAATTG+TGG + chr1_3:8466796-8466815 Msa0101810:intron 20.0%
!! GAATTGAGTTATAAATAACA+TGG + chr1_3:8466971-8466990 Msa0101810:intron 20.0%
!! AACAGAATTAAGTTTATTAC+AGG - chr1_3:8467031-8467050 None:intergenic 20.0%
!!! AACTTAATTCTGTTTTGAAA+TGG + chr1_3:8467037-8467056 Msa0101810:intron 20.0%
!! TTTGTCTTAAATTGTTCATT+AGG + chr1_3:8467137-8467156 Msa0101810:intron 20.0%
!!! TAAGAACATGTTAACTTTTT+TGG - chr1_3:8467330-8467349 None:intergenic 20.0%
!! AAAAAGTTAACATGTTCTTA+TGG + chr1_3:8467330-8467349 Msa0101810:intron 20.0%
!! ATGATTCAACAAAGAAAATA+TGG - chr1_3:8467397-8467416 None:intergenic 20.0%
!! TTTATATATTATACTCATGC+AGG + chr1_3:8468200-8468219 Msa0101810:intron 20.0%
!!! ATATAATCATCTAAGATTCT+TGG + chr1_3:8468404-8468423 Msa0101810:intron 20.0%
!! TATTGAAATCAATATGTACT+TGG + chr1_3:8468538-8468557 Msa0101810:intron 20.0%
!! ATTGAAATCAATATGTACTT+GGG + chr1_3:8468539-8468558 Msa0101810:intron 20.0%
!! TATTGAAATCAATATGTACT+TGG + chr1_3:8468538-8468557 Msa0101810:intron 20.0%
!! ATTGAAATCAATATGTACTT+GGG + chr1_3:8468539-8468558 Msa0101810:intron 20.0%
!!! TTTAATTGTTCTTGTTTATC+TGG + chr1_3:8468690-8468709 Msa0101810:intron 20.0%
!!! TTAATTGTTCTTGTTTATCT+GGG + chr1_3:8468691-8468710 Msa0101810:intron 20.0%
!!! GAAAATAATGTTTTTGGTTT+AGG + chr1_3:8469040-8469059 Msa0101810:intron 20.0%
!!! TTTTTACTTCTGAATTAACT+TGG - chr1_3:8469357-8469376 None:intergenic 20.0%
!! AAACTATTGCTTAAAATCTA+TGG + chr1_3:8469375-8469394 Msa0101810:intron 20.0%
!!! TTTACCCAGTTTTTTATATA+AGG + chr1_3:8469524-8469543 Msa0101810:intron 20.0%
!!! TTACCCAGTTTTTTATATAA+GGG + chr1_3:8469525-8469544 Msa0101810:intron 20.0%
!!! AGTGAAAAAAATGTTGTTTT+TGG + chr1_3:8469883-8469902 Msa0101810:three_prime_UTR 20.0%
!!! GTGAAAAAAATGTTGTTTTT+GGG + chr1_3:8469884-8469903 Msa0101810:three_prime_UTR 20.0%
!! ATTCCACTACATAAATTAAA+CGG + chr1_3:8470017-8470036 Msa0101810:three_prime_UTR 20.0%
!! TGATATAGTGAATAATATAG+TGG - chr1_3:8470068-8470087 None:intergenic 20.0%
!!! ACATATAGATAATGGTATAT+AGG - chr1_3:8470123-8470142 None:intergenic 20.0%
!! TGATTTGAACATATAGATAA+TGG - chr1_3:8470131-8470150 None:intergenic 20.0%
!! CGGAATAAAATTTTCATTCT+AGG + chr1_3:8465922-8465941 Msa0101810:intron 25.0%
!!! ATTTTCATTCTAGGGTTTTT+AGG + chr1_3:8465931-8465950 Msa0101810:intron 25.0%
!!! TTTTCATTCTAGGGTTTTTA+GGG + chr1_3:8465932-8465951 Msa0101810:intron 25.0%
!!! TTTCTTGTTTTTCGATTTAC+TGG + chr1_3:8465979-8465998 Msa0101810:intron 25.0%
!! CTTGAGTTTCATCTAAATTT+TGG + chr1_3:8466031-8466050 Msa0101810:intron 25.0%
! AAATAATAAGGACACATAGA+AGG - chr1_3:8466431-8466450 None:intergenic 25.0%
! TATGTGTCCTTATTATTTGT+TGG + chr1_3:8466433-8466452 Msa0101810:intron 25.0%
!!! TTATATTTGGGTTGATATGT+TGG + chr1_3:8466547-8466566 Msa0101810:intron 25.0%
!!! TATATTTGGGTTGATATGTT+GGG + chr1_3:8466548-8466567 Msa0101810:intron 25.0%
! GAATTATTTCCTGAAGTATA+TGG + chr1_3:8466706-8466725 Msa0101810:intron 25.0%
! AATCAAACTTATTTGGTCAA+TGG - chr1_3:8466839-8466858 None:intergenic 25.0%
! ATTGACCAAATAAGTTTGAT+TGG + chr1_3:8466838-8466857 Msa0101810:intron 25.0%
! ACTTTCCAATCAAACTTATT+TGG - chr1_3:8466846-8466865 None:intergenic 25.0%
!! AATAAGTTGAAAGCATAACA+AGG - chr1_3:8466895-8466914 None:intergenic 25.0%
! AGTTATAAATAACATGGAGT+GGG + chr1_3:8466977-8466996 Msa0101810:intron 25.0%
!!! TTAATTCTGTTTTGAAATGG+AGG + chr1_3:8467040-8467059 Msa0101810:intron 25.0%
!!! TAATTCTGTTTTGAAATGGA+GGG + chr1_3:8467041-8467060 Msa0101810:intron 25.0%
! AATATTGAAACAACAGGAAT+GGG - chr1_3:8467284-8467303 None:intergenic 25.0%
! AAATATTGAAACAACAGGAA+TGG - chr1_3:8467285-8467304 None:intergenic 25.0%
!!! TTCTGAAATATTGAAACAAC+AGG - chr1_3:8467290-8467309 None:intergenic 25.0%
! ACAAATATTTGTAAAGAGGA+AGG - chr1_3:8467373-8467392 None:intergenic 25.0%
!!! TCTTTTGCCATTTTCAAATA+TGG + chr1_3:8467443-8467462 Msa0101810:intron 25.0%
!! TGTTTTATCTTGACTATTTG+CGG + chr1_3:8467905-8467924 Msa0101810:intron 25.0%
! TTCCAATCAAACAATCATAT+AGG + chr1_3:8468028-8468047 Msa0101810:intron 25.0%
! TAACTATCTAGTAATGAGAT+GGG + chr1_3:8468351-8468370 Msa0101810:intron 25.0%
!!! AGATTCTTGGTTTTTAATTG+TGG + chr1_3:8468417-8468436 Msa0101810:intron 25.0%
! ACCATGTCTCAATATTAAAA+TGG - chr1_3:8468739-8468758 None:intergenic 25.0%
! ATCTCTTATATTCAAGTATC+TGG - chr1_3:8468843-8468862 None:intergenic 25.0%
! TGCTTAAATTATTCACAATG+CGG + chr1_3:8469064-8469083 Msa0101810:intron 25.0%
!!! ATGTTTGTGCTTTTTACTTA+TGG + chr1_3:8469259-8469278 Msa0101810:intron 25.0%
! TTATGGAAAAAAGTCTTGAT+AGG + chr1_3:8469276-8469295 Msa0101810:intron 25.0%
! GATAGGTATATTGATGTTTA+TGG + chr1_3:8469293-8469312 Msa0101810:intron 25.0%
!!! AGTTTTTTCTAGTTAGTTGT+TGG + chr1_3:8469453-8469472 Msa0101810:intron 25.0%
! CTTCCCTTATATAAAAAACT+GGG - chr1_3:8469531-8469550 None:intergenic 25.0%
! ACTTCCCTTATATAAAAAAC+TGG - chr1_3:8469532-8469551 None:intergenic 25.0%
! CTGAGGTAATTAAAAAATTC+TGG - chr1_3:8469597-8469616 None:intergenic 25.0%
!!! TTTCTACCATGTTTTTATGT+AGG + chr1_3:8470162-8470181 Msa0101810:three_prime_UTR 25.0%
AAAATCGAGTGAATCGAAAA+CGG - chr1_3:8465860-8465879 None:intergenic 30.0%
!! TGTTTTTCGATTTACTGGTT+TGG + chr1_3:8465984-8466003 Msa0101810:intron 30.0%
!!! GTTTTTCGATTTACTGGTTT+GGG + chr1_3:8465985-8466004 Msa0101810:intron 30.0%
!!! TAAGCACTTTTGAGATTGTT+TGG + chr1_3:8466178-8466197 Msa0101810:intron 30.0%
!!! AAGCACTTTTGAGATTGTTT+GGG + chr1_3:8466179-8466198 Msa0101810:intron 30.0%
GTTATAGAAATGGCTTATAC+AGG + chr1_3:8466330-8466349 Msa0101810:intron 30.0%
ATTACGTTGTTTATCCTAAC+AGG + chr1_3:8466392-8466411 Msa0101810:intron 30.0%
GATAATAACAATGTCCTGTT+AGG - chr1_3:8466409-8466428 None:intergenic 30.0%
CAAACGTCCAACAAATAATA+AGG - chr1_3:8466443-8466462 None:intergenic 30.0%
! TATTTGTTGGACGTTTGAAA+TGG + chr1_3:8466446-8466465 Msa0101810:intron 30.0%
!! CTTTTACATCAAGTTGCTTT+AGG + chr1_3:8466612-8466631 Msa0101810:intron 30.0%
TTTAGGCCTCTAAATATGTT+GGG + chr1_3:8466629-8466648 Msa0101810:intron 30.0%
!! CTTGTTATGTTTTTCCTTGT+TGG + chr1_3:8466684-8466703 Msa0101810:intron 30.0%
TTCAGGAAATAATTCCAACA+AGG - chr1_3:8466701-8466720 None:intergenic 30.0%
TATTTGGTCAATGGTCAATA+AGG - chr1_3:8466830-8466849 None:intergenic 30.0%
AAAGCATAACAAGGACATTA+TGG - chr1_3:8466886-8466905 None:intergenic 30.0%
GAGTTATAAATAACATGGAG+TGG + chr1_3:8466976-8466995 Msa0101810:intron 30.0%
GAATTAAGTTTATTACAGGC+AGG - chr1_3:8467027-8467046 None:intergenic 30.0%
! TTAGTTCAGTTTTTGAATCG+AGG + chr1_3:8467111-8467130 Msa0101810:intron 30.0%
AACATGTTCTTATGGTATTC+TGG + chr1_3:8467338-8467357 Msa0101810:intron 30.0%
TGGCACAAATATTTGTAAAG+AGG - chr1_3:8467377-8467396 None:intergenic 30.0%
TAGCAAGCCATATTTGAAAA+TGG - chr1_3:8467453-8467472 None:intergenic 30.0%
AAAGCCAAAAATCCAACATA+TGG + chr1_3:8467507-8467526 Msa0101810:intron 30.0%
GGGTCACATAATTGTATAAA+AGG + chr1_3:8467871-8467890 Msa0101810:intron 30.0%
! GTTTTATCTTGACTATTTGC+GGG + chr1_3:8467906-8467925 Msa0101810:intron 30.0%
GTCCTATATGATTGTTTGAT+TGG - chr1_3:8468033-8468052 None:intergenic 30.0%
!! GACTATATAGTAGCCATTTT+AGG - chr1_3:8468091-8468110 None:intergenic 30.0%
! GAAGCTTCTTTTCTATGTAT+AGG + chr1_3:8468162-8468181 Msa0101810:intron 30.0%
CATTACTAGATAGTTACCTT+TGG - chr1_3:8468347-8468366 None:intergenic 30.0%
GTAACTATCTAGTAATGAGA+TGG + chr1_3:8468350-8468369 Msa0101810:intron 30.0%
!! GCCATTTTAATATTGAGACA+TGG + chr1_3:8468735-8468754 Msa0101810:intron 30.0%
GATATTTATAGCATGCTTGT+AGG + chr1_3:8468914-8468933 Msa0101810:intron 30.0%
ATGTTTATGGAGAAGTTGAA+TGG + chr1_3:8469306-8469325 Msa0101810:intron 30.0%
TAAAAAACTGGGTAAAAGCT+AGG - chr1_3:8469520-8469539 None:intergenic 30.0%
ATTACTTGAGAAGAACAAAG+TGG + chr1_3:8469565-8469584 Msa0101810:intron 30.0%
TTACTTGAGAAGAACAAAGT+GGG + chr1_3:8469566-8469585 Msa0101810:intron 30.0%
TCTACTGTAATAATCAACTG+AGG - chr1_3:8469614-8469633 None:intergenic 30.0%
ATTATTACAGTAGACAGTTG+TGG + chr1_3:8469620-8469639 Msa0101810:intron 30.0%
! TCCTGTGAAAAACATGTTTT+GGG + chr1_3:8469841-8469860 Msa0101810:three_prime_UTR 30.0%
!! TAAAACTTGGTTGTTGGTTT+GGG - chr1_3:8469984-8470003 None:intergenic 30.0%
! ATAAAACTTGGTTGTTGGTT+TGG - chr1_3:8469985-8470004 None:intergenic 30.0%
GCGTCATTGTTCTATTATAT+AGG + chr1_3:8470039-8470058 Msa0101810:three_prime_UTR 30.0%
GGTATATAGGTTATGTAGTA+AGG - chr1_3:8470110-8470129 None:intergenic 30.0%
GTAGTACCTACATAAAAACA+TGG - chr1_3:8470171-8470190 None:intergenic 30.0%
! CAACGCTTACTTTGTTTGAT+CGG + chr1_3:8465902-8465921 Msa0101810:intron 35.0%
ACTTGTTTGAGCTTATCTAC+TGG + chr1_3:8466153-8466172 Msa0101810:intron 35.0%
CTTTAGGCCTCTAAATATGT+TGG + chr1_3:8466628-8466647 Msa0101810:intron 35.0%
ACTCTTCAACCATATACTTC+AGG - chr1_3:8466718-8466737 None:intergenic 35.0%
!! TTCATTAGGTTGAACTGCAA+TGG + chr1_3:8467151-8467170 Msa0101810:intron 35.0%
CGCAATAATGCATTCATATC+AGG - chr1_3:8467638-8467657 None:intergenic 35.0%
GAATGCATTATTGCGAAAGT+CGG + chr1_3:8467643-8467662 Msa0101810:intron 35.0%
AATGCATTATTGCGAAAGTC+GGG + chr1_3:8467644-8467663 Msa0101810:intron 35.0%
CATCTTGTCTGAACTGTATT+GGG + chr1_3:8467701-8467720 Msa0101810:intron 35.0%
GATTTATTGCAACCTCGATA+AGG + chr1_3:8467737-8467756 Msa0101810:intron 35.0%
GATAAGGATCCTAGATTTGA+TGG + chr1_3:8467753-8467772 Msa0101810:intron 35.0%
ATCTACTGTCCATCAAATCT+AGG - chr1_3:8467765-8467784 None:intergenic 35.0%
CTTCTCGCACACTTAAAAAT+AGG + chr1_3:8467951-8467970 Msa0101810:intron 35.0%
TGATTCACACGTAATGTTAG+AGG - chr1_3:8467977-8467996 None:intergenic 35.0%
TCTAACATTACGTGTGAATC+AGG + chr1_3:8467976-8467995 Msa0101810:intron 35.0%
! TGAGAGCATGATTTGATACA+AGG + chr1_3:8467999-8468018 Msa0101810:intron 35.0%
TCTTATGCTCTCACCTAAAA+TGG + chr1_3:8468075-8468094 Msa0101810:intron 35.0%
GCTTAAATGGATAATCTGGT+GGG - chr1_3:8468322-8468341 None:intergenic 35.0%
TTATCCATTTAAGCCACCAA+AGG + chr1_3:8468328-8468347 Msa0101810:CDS 35.0%
TACTAGATAGTTACCTTTGG+TGG - chr1_3:8468344-8468363 None:intergenic 35.0%
TTTGACCTTAGCAATACATC+CGG - chr1_3:8468451-8468470 None:intergenic 35.0%
TGTATTGCTAAGGTCAAATG+CGG + chr1_3:8468453-8468472 Msa0101810:intron 35.0%
AATCCATGTTACCACAATTG+AGG - chr1_3:8468517-8468536 None:intergenic 35.0%
ATATCAAAGCAGAACCTTCA+TGG + chr1_3:8468786-8468805 Msa0101810:intron 35.0%
ATGGTTCATGTCATTGACAT+AGG + chr1_3:8468805-8468824 Msa0101810:intron 35.0%
! ATCTTTTCTCCCTTTTCTTG+AGG + chr1_3:8468973-8468992 Msa0101810:intron 35.0%
TACGATAATATGCCTTGGTT+GGG + chr1_3:8469202-8469221 Msa0101810:intron 35.0%
CAATAAGTTAATCCCAACCA+AGG - chr1_3:8469217-8469236 None:intergenic 35.0%
TTATGGAGAAGTTGAATGGT+AGG + chr1_3:8469310-8469329 Msa0101810:intron 35.0%
TATGGAGAAGTTGAATGGTA+GGG + chr1_3:8469311-8469330 Msa0101810:intron 35.0%
GATTTATCTTGTATTGCTGC+AGG + chr1_3:8469649-8469668 Msa0101810:intron 35.0%
! TTTGTCAGTCTTGTACATGT+GGG - chr1_3:8469741-8469760 None:intergenic 35.0%
!! ACAAATGCTTGTGGTTCTAA+AGG + chr1_3:8469816-8469835 Msa0101810:three_prime_UTR 35.0%
! CTCCTGTGAAAAACATGTTT+TGG + chr1_3:8469840-8469859 Msa0101810:three_prime_UTR 35.0%
! TCCCAAAACATGTTTTTCAC+AGG - chr1_3:8469845-8469864 None:intergenic 35.0%
!!! AACATGTTTTGGGATGCAAA+AGG + chr1_3:8469851-8469870 Msa0101810:three_prime_UTR 35.0%
TCACTTAGTCGGATAAAACT+TGG - chr1_3:8469997-8470016 None:intergenic 35.0%
! TGTAGTGGAATTCACTTAGT+CGG - chr1_3:8470008-8470027 None:intergenic 35.0%
! ACGCCGTTTAATTTATGTAG+TGG - chr1_3:8470023-8470042 None:intergenic 35.0%
AGTTCTGTTAGCGAGAGAAA+GGG - chr1_3:8465791-8465810 None:intergenic 40.0%
AAGTTCTGTTAGCGAGAGAA+AGG - chr1_3:8465792-8465811 None:intergenic 40.0%
ACCTTGGAGATGGAATCTTA+GGG - chr1_3:8465819-8465838 None:intergenic 40.0%
AACCTTGGAGATGGAATCTT+AGG - chr1_3:8465820-8465839 None:intergenic 40.0%
GAAGAAATCGAAGCAAACCT+TGG - chr1_3:8465835-8465854 None:intergenic 40.0%
GTTGCACAAGGATAAACAGA+AGG - chr1_3:8465886-8465905 None:intergenic 40.0%
! AACAAAGTAAGCGTTGCACA+AGG - chr1_3:8465898-8465917 None:intergenic 40.0%
GTTGCTTGTGTTAGAGCTTA+CGG + chr1_3:8466117-8466136 Msa0101810:intron 40.0%
! GTTAGAGCTTACGGTTTGTT+TGG + chr1_3:8466126-8466145 Msa0101810:intron 40.0%
!! TTGGGTTGATATGTTGGGAT+TGG + chr1_3:8466553-8466572 Msa0101810:intron 40.0%
ATGCCAAGACAACAAGAACA+GGG - chr1_3:8466659-8466678 None:intergenic 40.0%
!! CATGGAGTGGGAGTATTATT+TGG + chr1_3:8466989-8467008 Msa0101810:intron 40.0%
TATTACAGGCAGGCAGTAAA+AGG - chr1_3:8467017-8467036 None:intergenic 40.0%
!!! CTGTTTTGAAATGGAGGGAT+AGG + chr1_3:8467046-8467065 Msa0101810:intron 40.0%
! CTCCTTAGTAATGCGTTTTG+AGG - chr1_3:8467177-8467196 None:intergenic 40.0%
ACGCATTACTAAGGAGTTGA+AGG + chr1_3:8467181-8467200 Msa0101810:CDS 40.0%
TTGAAACAACAGGAATGGGT+GGG - chr1_3:8467280-8467299 None:intergenic 40.0%
ATTGAAACAACAGGAATGGG+TGG - chr1_3:8467281-8467300 None:intergenic 40.0%
!! CTTATGGTATTCTGGAGCAT+TGG + chr1_3:8467346-8467365 Msa0101810:intron 40.0%
! GGCACCATATGTTGGATTTT+TGG - chr1_3:8467514-8467533 None:intergenic 40.0%
! TGCATTCATATCAGGCATTG+AGG - chr1_3:8467630-8467649 None:intergenic 40.0%
ATCTCTCCAAATTCCACAGT+AGG - chr1_3:8467676-8467695 None:intergenic 40.0%
TACTGTGGAATTTGGAGAGA+TGG + chr1_3:8467675-8467694 Msa0101810:intron 40.0%
ACTGTGGAATTTGGAGAGAT+GGG + chr1_3:8467676-8467695 Msa0101810:intron 40.0%
GCATCTTGTCTGAACTGTAT+TGG + chr1_3:8467700-8467719 Msa0101810:intron 40.0%
! CAAATCTAGGATCCTTATCG+AGG - chr1_3:8467752-8467771 None:intergenic 40.0%
! TTTTCTCCTCTTACTCTCGA+CGG - chr1_3:8467797-8467816 None:intergenic 40.0%
AAAGAAGCTTCAAGCGTACT+TGG - chr1_3:8468153-8468172 None:intergenic 40.0%
TTGGTGAAGACCTGTTTCAT+TGG + chr1_3:8468228-8468247 Msa0101810:CDS 40.0%
! TAGTAGCTTGCCAATGAAAC+AGG - chr1_3:8468241-8468260 None:intergenic 40.0%
TCATTGGCAAGCTACTATCA+TGG + chr1_3:8468244-8468263 Msa0101810:CDS 40.0%
CATTGGCAAGCTACTATCAT+GGG + chr1_3:8468245-8468264 Msa0101810:CDS 40.0%
ATAATCTGGTGGGAAGTGAA+TGG - chr1_3:8468312-8468331 None:intergenic 40.0%
GGCTTAAATGGATAATCTGG+TGG - chr1_3:8468323-8468342 None:intergenic 40.0%
GGTGGCTTAAATGGATAATC+TGG - chr1_3:8468326-8468345 None:intergenic 40.0%
! GTTACCTTTGGTGGCTTAAA+TGG - chr1_3:8468335-8468354 None:intergenic 40.0%
TTTAATTGTGGTCTGTGTCC+CGG + chr1_3:8468429-8468448 Msa0101810:intron 40.0%
TTGACCTTAGCAATACATCC+GGG - chr1_3:8468450-8468469 None:intergenic 40.0%
TTGTGGTCATGATGTAGTTG+AGG + chr1_3:8468491-8468510 Msa0101810:intron 40.0%
AATATGTACTTGGGCTGATG+TGG + chr1_3:8468548-8468567 Msa0101810:intron 40.0%
TTGTGGTCATGTTGTAGTTG+AGG + chr1_3:8468577-8468596 Msa0101810:intron 40.0%
AATCCATGTGACCACAATTG+AGG - chr1_3:8468603-8468622 None:intergenic 40.0%
AATGGCTAAACGCAATGACA+TGG - chr1_3:8468721-8468740 None:intergenic 40.0%
GTCAATGACATGAACCATGA+AGG - chr1_3:8468803-8468822 None:intergenic 40.0%
ATGTCATTGACATAGGCTGA+TGG + chr1_3:8468812-8468831 Msa0101810:intron 40.0%
TGTCATTGACATAGGCTGAT+GGG + chr1_3:8468813-8468832 Msa0101810:intron 40.0%
! TTCTCCCTTTTCTTGAGGAA+CGG + chr1_3:8468978-8468997 Msa0101810:intron 40.0%
AACTCCGTTCCTCAAGAAAA+GGG - chr1_3:8468985-8469004 None:intergenic 40.0%
! ATTCACAATGCGGCTTTTGT+AGG + chr1_3:8469074-8469093 Msa0101810:intron 40.0%
! GTGGAACACTTTTGTTCGAA+AGG - chr1_3:8469103-8469122 None:intergenic 40.0%
ACCCTAACATCAACAGCAAT+GGG + chr1_3:8469121-8469140 Msa0101810:CDS 40.0%
! TCCCATTGCTGTTGATGTTA+GGG - chr1_3:8469125-8469144 None:intergenic 40.0%
! TTGACATTCTGAAAGAGCAG+TGG + chr1_3:8469154-8469173 Msa0101810:CDS 40.0%
! GAAGGTACGATAATATGCCT+TGG + chr1_3:8469197-8469216 Msa0101810:intron 40.0%
GTACGATAATATGCCTTGGT+TGG + chr1_3:8469201-8469220 Msa0101810:intron 40.0%
TTGTACATGTGGGCAATATC+AGG - chr1_3:8469731-8469750 None:intergenic 40.0%
! CTTTGTCAGTCTTGTACATG+TGG - chr1_3:8469742-8469761 None:intergenic 40.0%
! ATATTTCTGAGTCCAAGACC+GGG - chr1_3:8469783-8469802 None:intergenic 40.0%
! CATATTTCTGAGTCCAAGAC+CGG - chr1_3:8469784-8469803 None:intergenic 40.0%
TGAACTAGCACAAATGCTTG+TGG + chr1_3:8469807-8469826 Msa0101810:exon 40.0%
!!! GTTGTTTTTGGGATGCATGT+TGG + chr1_3:8469895-8469914 Msa0101810:three_prime_UTR 40.0%
GTCGGATAAAACTTGGTTGT+TGG - chr1_3:8469990-8470009 None:intergenic 40.0%
ACATGGTAGAAACTCGACTT+AGG - chr1_3:8470154-8470173 None:intergenic 40.0%
ACCCTAAGATTCCATCTCCA+AGG + chr1_3:8465815-8465834 Msa0101810:five_prime_UTR 45.0%
ATCGAAGCAAACCTTGGAGA+TGG - chr1_3:8465829-8465848 None:intergenic 45.0%
GATGCCAAGACAACAAGAAC+AGG - chr1_3:8466660-8466679 None:intergenic 45.0%
!! ATGGTTGAAGAGTGCTATCG+AGG + chr1_3:8466725-8466744 Msa0101810:intron 45.0%
AGGCATCAACACACTCTCAT+TGG + chr1_3:8466748-8466767 Msa0101810:intron 45.0%
GGCCTCAAAACGCATTACTA+AGG + chr1_3:8467172-8467191 Msa0101810:CDS 45.0%
GAGAGAGATAGACTGTGCAA+TGG - chr1_3:8467252-8467271 None:intergenic 45.0%
GTCATCAGTGTTATCGACAG+CGG + chr1_3:8467484-8467503 Msa0101810:intron 45.0%
CTGCACAAAGTGGCAGATAA+CGG + chr1_3:8467540-8467559 Msa0101810:intron 45.0%
CATCACAAAATTGGCCATGG+CGG - chr1_3:8467600-8467619 None:intergenic 45.0%
! GCCATGGCCAATTTTGTGAT+GGG + chr1_3:8467599-8467618 Msa0101810:intron 45.0%
ACCCATCACAAAATTGGCCA+TGG - chr1_3:8467603-8467622 None:intergenic 45.0%
!! ATGGCCAATTTTGTGATGGG+TGG + chr1_3:8467602-8467621 Msa0101810:intron 45.0%
TCAGCACCTACTGTGGAATT+TGG + chr1_3:8467667-8467686 Msa0101810:intron 45.0%
TAGAAACCGTCGAGAGTAAG+AGG + chr1_3:8467788-8467807 Msa0101810:intron 45.0%
GAAACAGGTCTTCACCAACA+GGG - chr1_3:8468226-8468245 None:intergenic 45.0%
TGAAACAGGTCTTCACCAAC+AGG - chr1_3:8468227-8468246 None:intergenic 45.0%
AGGAATACACCACCAGCATA+AGG - chr1_3:8468284-8468303 None:intergenic 45.0%
!! GGCTGATGTGGCTTTAATTG+TGG + chr1_3:8468474-8468493 Msa0101810:intron 45.0%
TGTAGTTGAGGCCTCAATTG+TGG + chr1_3:8468503-8468522 Msa0101810:intron 45.0%
AGGCCTCAATTGTGGTAACA+TGG + chr1_3:8468511-8468530 Msa0101810:intron 45.0%
!! GGCTGATGTGGCTTTAATTG+TGG + chr1_3:8468474-8468493 Msa0101810:intron 45.0%
TGTAGTTGAGGCCTCAATTG+TGG + chr1_3:8468503-8468522 Msa0101810:intron 45.0%
CAACTCCGTTCCTCAAGAAA+AGG - chr1_3:8468986-8469005 None:intergenic 45.0%
! CTTTTCTTGAGGAACGGAGT+TGG + chr1_3:8468984-8469003 Msa0101810:intron 45.0%
! CATTGCTGTTGATGTTAGGG+TGG - chr1_3:8469122-8469141 None:intergenic 45.0%
CACCCTAACATCAACAGCAA+TGG + chr1_3:8469120-8469139 Msa0101810:CDS 45.0%
! CTCCCATTGCTGTTGATGTT+AGG - chr1_3:8469126-8469145 None:intergenic 45.0%
TCCTGCTCTTACTGTTTCGA+AGG + chr1_3:8469179-8469198 Msa0101810:CDS 45.0%
ACCTTCGAAACAGTAAGAGC+AGG - chr1_3:8469183-8469202 None:intergenic 45.0%
AACTGGGTAAAAGCTAGGCA+AGG - chr1_3:8469515-8469534 None:intergenic 45.0%
TCCTAACCCAGATGATCCTT+TGG + chr1_3:8469703-8469722 Msa0101810:CDS 45.0%
ACCAAAGGATCATCTGGGTT+AGG - chr1_3:8469707-8469726 None:intergenic 45.0%
!! TTTAAAGAAATATTATATTT+GGG + chr1_3:8466535-8466554 Msa0101810:intron 5.0%
GGCCTCTAAATATGTTGGGC+CGG + chr1_3:8466633-8466652 Msa0101810:intron 50.0%
CAAGACAACAAGAACAGGGC+CGG - chr1_3:8466655-8466674 None:intergenic 50.0%
!! GTTGAAGAGTGCTATCGAGG+AGG + chr1_3:8466728-8466747 Msa0101810:intron 50.0%
ATACCAGCACTGCAAGACAC+AGG - chr1_3:8467224-8467243 None:intergenic 50.0%
!! ATCTGCCACTTTGTGCAGGA+TGG - chr1_3:8467538-8467557 None:intergenic 50.0%
!! CGTTATCTGCCACTTTGTGC+AGG - chr1_3:8467542-8467561 None:intergenic 50.0%
! AAAGTGGCAGATAACGGCCA+TGG + chr1_3:8467546-8467565 Msa0101810:intron 50.0%
!!! GGATATCAGTGGCGGGTTTT+TGG + chr1_3:8467570-8467589 Msa0101810:intron 50.0%
! CGCCATGGCCAATTTTGTGA+TGG + chr1_3:8467598-8467617 Msa0101810:intron 50.0%
! GGTGCCACCCATCACAAAAT+TGG - chr1_3:8467609-8467628 None:intergenic 50.0%
TGAACTGTATTGGGCGTGTC+TGG + chr1_3:8467710-8467729 Msa0101810:intron 50.0%
TATACTCATGCAGGCCCTGT+TGG + chr1_3:8468209-8468228 Msa0101810:intron 50.0%
GCAAGCTACTATCATGGGAC+CGG + chr1_3:8468250-8468269 Msa0101810:CDS 50.0%
GTGGGAAGTGAATGGTCACT+AGG - chr1_3:8468304-8468323 None:intergenic 50.0%
GTGTCCCGGATGTATTGCTA+AGG + chr1_3:8468443-8468462 Msa0101810:intron 50.0%
AAGGTCAAATGCGGCTGATG+TGG + chr1_3:8468462-8468481 Msa0101810:intron 50.0%
AGGCCTCAATTGTGGTCACA+TGG + chr1_3:8468597-8468616 Msa0101810:intron 50.0%
GCAGAGAGCAAATTGACAGC+AGG - chr1_3:8469676-8469695 None:intergenic 50.0%
CAGGCACCAAAGGATCATCT+GGG - chr1_3:8469712-8469731 None:intergenic 50.0%
TCAGGCACCAAAGGATCATC+TGG - chr1_3:8469713-8469732 None:intergenic 50.0%
TGGGCAATATCAGGCACCAA+AGG - chr1_3:8469722-8469741 None:intergenic 50.0%
CCAAGTATGAGACTACTGCC+CGG + chr1_3:8469762-8469781 Msa0101810:CDS 50.0%
AAAGGGAGCGATGCGTTGTG+AGG - chr1_3:8465774-8465793 None:intergenic 55.0%
GGCCGGCCCAACATATTTAG+AGG - chr1_3:8466638-8466657 None:intergenic 55.0%
! CGGCCCTGTTCTTGTTGTCT+TGG + chr1_3:8466653-8466672 Msa0101810:intron 55.0%
CAGCACTGCAAGACACAGGA+GGG - chr1_3:8467220-8467239 None:intergenic 55.0%
! AGGATGGCGGCACCATATGT+TGG - chr1_3:8467522-8467541 None:intergenic 55.0%
!! TGCCACTTTGTGCAGGATGG+CGG - chr1_3:8467535-8467554 None:intergenic 55.0%
!!! GGGTTTTTGGCTTTCCGCCA+TGG + chr1_3:8467583-8467602 Msa0101810:intron 55.0%
CCAGCATAAGGACTGTCTGC+CGG - chr1_3:8468272-8468291 None:intergenic 55.0%
GCAGACAGTCCTTATGCTGG+TGG + chr1_3:8468272-8468291 Msa0101810:CDS 55.0%
CCGGGCAGTAGTCTCATACT+TGG - chr1_3:8469765-8469784 None:intergenic 55.0%
ATGAGACTACTGCCCGGTCT+TGG + chr1_3:8469768-8469787 Msa0101810:CDS 55.0%
CCAGCACTGCAAGACACAGG+AGG - chr1_3:8467221-8467240 None:intergenic 60.0%
CCTCCTGTGTCTTGCAGTGC+TGG + chr1_3:8467218-8467237 Msa0101810:CDS 60.0%
TGCCGCCATCCTGCACAAAG+TGG + chr1_3:8467530-8467549 Msa0101810:intron 60.0%
! GTGGCAGATAACGGCCATGG+CGG + chr1_3:8467549-8467568 Msa0101810:intron 60.0%
!! ACGGCCATGGCGGATATCAG+TGG + chr1_3:8467559-8467578 Msa0101810:intron 60.0%
!! GCCATGGCGGATATCAGTGG+CGG + chr1_3:8467562-8467581 Msa0101810:intron 60.0%
!! CCATGGCGGATATCAGTGGC+GGG + chr1_3:8467563-8467582 Msa0101810:intron 60.0%
AGTCGGGTCAGCACCTACTG+TGG + chr1_3:8467660-8467679 Msa0101810:intron 60.0%
CCGGCAGACAGTCCTTATGC+TGG + chr1_3:8468269-8468288 Msa0101810:CDS 60.0%
CCCGCCACTGATATCCGCCA+TGG - chr1_3:8467566-8467585 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 8465755 8470221 8465755 ID=Msa0101810;Name=Msa0101810
chr1_3 mRNA 8465755 8470221 8465755 ID=Msa0101810-mRNA-1;Parent=Msa0101810;Name=Msa0101810-mRNA-1;_AED=0.07;_eAED=0.07;_QI=93|1|1|1|0.75|0.6|5|407|148
chr1_3 exon 8465755 8465836 8465755 ID=Msa0101810-mRNA-1:exon:3323;Parent=Msa0101810-mRNA-1
chr1_3 exon 8467159 8467239 8467159 ID=Msa0101810-mRNA-1:exon:3324;Parent=Msa0101810-mRNA-1
chr1_3 exon 8468222 8468349 8468222 ID=Msa0101810-mRNA-1:exon:3325;Parent=Msa0101810-mRNA-1
chr1_3 exon 8469096 8469200 8469096 ID=Msa0101810-mRNA-1:exon:3326;Parent=Msa0101810-mRNA-1
chr1_3 exon 8469671 8470221 8469671 ID=Msa0101810-mRNA-1:exon:3327;Parent=Msa0101810-mRNA-1
chr1_3 five_prime_UTR 8465755 8465836 8465755 ID=Msa0101810-mRNA-1:five_prime_utr;Parent=Msa0101810-mRNA-1
chr1_3 five_prime_UTR 8467159 8467169 8467159 ID=Msa0101810-mRNA-1:five_prime_utr;Parent=Msa0101810-mRNA-1
chr1_3 CDS 8467170 8467239 8467170 ID=Msa0101810-mRNA-1:cds;Parent=Msa0101810-mRNA-1
chr1_3 CDS 8468222 8468349 8468222 ID=Msa0101810-mRNA-1:cds;Parent=Msa0101810-mRNA-1
chr1_3 CDS 8469096 8469200 8469096 ID=Msa0101810-mRNA-1:cds;Parent=Msa0101810-mRNA-1
chr1_3 CDS 8469671 8469814 8469671 ID=Msa0101810-mRNA-1:cds;Parent=Msa0101810-mRNA-1
chr1_3 three_prime_UTR 8469815 8470221 8469815 ID=Msa0101810-mRNA-1:three_prime_utr;Parent=Msa0101810-mRNA-1
Gene Sequence

>Msa0101810

ATGGCCTCAAAACGCATTACTAAGGAGTTGAAGGACTTGCAGAAAGACCCTCCTGTGTCTTGCAGTGCTGGCCCTGTTGGTGAAGACCTGTTTCATTGGCAAGCTACTATCATGGGACCGGCAGACAGTCCTTATGCTGGTGGTGTATTCCTAGTGACCATTCACTTCCCACCAGATTATCCATTTAAGCCACCAAAGGTTTCCTTTCGAACAAAAGTGTTCCACCCTAACATCAACAGCAATGGGAGTATCTGTCTTGACATTCTGAAAGAGCAGTGGAGTCCTGCTCTTACTGTTTCGAAGGTCCTGCTGTCAATTTGCTCTCTGCTGACAGATCCTAACCCAGATGATCCTTTGGTGCCTGATATTGCCCACATGTACAAGACTGACAAAGCCAAGTATGAGACTACTGCCCGGTCTTGGACTCAGAAATATGCGATGAACTAG
Protein sequence

>Msa0101810

MASKRITKELKDLQKDPPVSCSAGPVGEDLFHWQATIMGPADSPYAGGVFLVTIHFPPDYPFKPPKVSFRTKVFHPNINSNGSICLDILKEQWSPALTVSKVLLSICSLLTDPNPDDPLVPDIAHMYKTDKAKYETTARSWTQKYAMN*