AlfalfaGEDB | Msa0719490

M. sativa cultivar zhongmu-4 / Msa0719490

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0719490	XP_003612700.1	97.333	150	3	1	1	150	1	149	2.10e-98	290

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0719490	G7K9J9	97.333	150	3	1	1	150	1	149	1.00e-98	290

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000550	Msa0719490	0.812158	4.879532e-51	-8.615850e-47
Msa0007230	Msa0719490	-0.806463	8.126458e-50	-8.615850e-47
Msa0017510	Msa0719490	-0.814232	1.710798e-51	-8.615850e-47
Msa0025670	Msa0719490	-0.803295	3.731174e-49	-8.615850e-47
Msa0029020	Msa0719490	0.815770	7.796607e-52	-8.615850e-47
Msa0038350	Msa0719490	0.861825	7.813920e-64	-8.615850e-47
Msa0055590	Msa0719490	-0.812156	4.885709e-51	-8.615850e-47
Msa0089150	Msa0719490	0.801840	7.448484e-49	-8.615850e-47
Msa0090040	Msa0719490	0.837181	6.047347e-57	-8.615850e-47
Msa0090280	Msa0719490	0.857528	1.535429e-62	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0719490	MtrunA17_Chr5g0410051	97.333	150	3	1	1	150	1	149	1.93e-102	290
Msa0719490	MtrunA17_Chr8g0375551	35.526	76	49	0	50	125	45	120	3.17e-15	68.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0719490	AT1G31940.1	68.000	150	45	3	1	149	1	148	3.93e-61	186
Msa0719490	AT2G35585.1	59.091	154	57	3	1	150	1	152	5.19e-55	170
Msa0719490	AT2G35585.2	67.470	83	25	1	1	83	1	81	3.56e-32	111

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Find 63 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCAGTGGTTGCATGAAA+CGG	0.458606	5_1:-14835445	None:intergenic
AACAATTGATAAATAATAAA+TGG	0.252213	5_1:-14835285	None:intergenic
AACTTCTCATGGAATTGAAG+TGG	0.616117	5_1:+14836823	Msa0719490:CDS
AATAAGCTCAAACTTAACAA+TGG	0.593404	5_1:-14838874	None:intergenic
AATCAGTGGTTGCATGAAAC+GGG	0.435864	5_1:-14835444	None:intergenic
AATTGGTCGATCATTATCAA+GGG	0.561117	5_1:-14836882	None:intergenic
ACATTAAGAATAGATGGTTC+TGG	0.414371	5_1:-14836917	None:intergenic
ACCTGCCAGTAATGAAGGAA+GGG	0.574103	5_1:+14838510	Msa0719490:CDS
AGAATAGATGGTTCTGGCAA+CGG	0.495108	5_1:-14836911	None:intergenic
AGCAGGACCTTCAGACTCAA+GGG	0.570495	5_1:-14838540	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGTGAAGTTTATGGAATC+GGG	+	chr5_1:14835961-14835980	Msa0719490:intron	30.0%
TTATGAAAATATGCTGAGAC+CGG	+	chr5_1:14836125-14836144	Msa0719490:intron	30.0%
GGAAACAGCTTAACTTTATT+AGG	-	chr5_1:14836511-14836530	None:intergenic	30.0%
AAGTTAACATGTAGAGCTTA+CGG	+	chr5_1:14836555-14836574	Msa0719490:intron	30.0%
CCTATGTTTATTTGTCTGTT+CGG	+	chr5_1:14836676-14836695	Msa0719490:intron	30.0%
AATTGGTCGATCATTATCAA+GGG	-	chr5_1:14836885-14836904	None:intergenic	30.0%
ACATTAAGAATAGATGGTTC+TGG	-	chr5_1:14836920-14836939	None:intergenic	30.0%
CGTCTTACATTAAGAATAGA+TGG	-	chr5_1:14836926-14836945	None:intergenic	30.0%
CTTTCATCTGTATCCAATAT+TGG	+	chr5_1:14837124-14837143	Msa0719490:intron	30.0%
GGCAAGATAAAATCCAATAT+TGG	-	chr5_1:14837140-14837159	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	14835233	14838890	14835233	ID=Msa0719490;Name=Msa0719490
chr5_1	mRNA	14835233	14838890	14835233	ID=Msa0719490-mRNA-1;Parent=Msa0719490;Name=Msa0719490-mRNA-1;_AED=0.01;_eAED=0.01;_QI=358\|1\|1\|1\|1\|1\|3\|229\|150
chr5_1	exon	14835233	14835656	14835233	ID=Msa0719490-mRNA-1:exon:5724;Parent=Msa0719490-mRNA-1
chr5_1	exon	14836755	14836937	14836755	ID=Msa0719490-mRNA-1:exon:5725;Parent=Msa0719490-mRNA-1
chr5_1	exon	14838458	14838890	14838458	ID=Msa0719490-mRNA-1:exon:5726;Parent=Msa0719490-mRNA-1
chr5_1	five_prime_UTR	14835233	14835590	14835233	ID=Msa0719490-mRNA-1:five_prime_utr;Parent=Msa0719490-mRNA-1
chr5_1	CDS	14835591	14835656	14835591	ID=Msa0719490-mRNA-1:cds;Parent=Msa0719490-mRNA-1
chr5_1	CDS	14836755	14836937	14836755	ID=Msa0719490-mRNA-1:cds;Parent=Msa0719490-mRNA-1
chr5_1	CDS	14838458	14838661	14838458	ID=Msa0719490-mRNA-1:cds;Parent=Msa0719490-mRNA-1
chr5_1	three_prime_UTR	14838662	14838890	14838662	ID=Msa0719490-mRNA-1:three_prime_utr;Parent=Msa0719490-mRNA-1

Gene Sequence

>Msa0719490

ATGGTGGGTTTGTTTTCTAGATTCTCTGTTGGAAAGAATATCCATCGACGAACACAAAGTGCCCTGGATGAGAGGGAAGTGGCGCCTGCAAACTCAGAGGTGGCAGCTGCTGTAGCTGCAAGTGCTGCTACTGCAACTTCTCATGGAATTGAAGTGGCTGTTGAGTTTAAGCCAGTTGAACATCCCGTTGAACCCCTTGATAATGATCGACCAATTCAGTGCCCGTTGCCAGAACCATCTATTCTTAATGATGGAAGAATATGGAAAGAACGTGCATCTGCTACCGTGCGTAGAAGAGGCGACCTGCCAGTAATGAAGGAAGGGGGAGGAGCCCTTGAGTCTGAAGGTCCTGCTCCTCGGCCGCGAAGATCTCACTCTAATCGAATGATCCTACCATCTCTTAGTGCTCCTGAGCATAATCTTCTAAAACTTCTTGAAGAGTCGGGCATCTAA

Protein sequence

>Msa0719490

MVGLFSRFSVGKNIHRRTQSALDEREVAPANSEVAAAVAASAATATSHGIEVAVEFKPVEHPVEPLDNDRPIQCPLPEPSILNDGRIWKERASATVRRRGDLPVMKEGGGALESEGPAPRPRRSHSNRMILPSLSAPEHNLLKLLEESGI*