Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0672680 | XP_003605353.1 | 94.975 | 199 | 10 | 0 | 1 | 199 | 1 | 199 | 9.30e-138 | 393 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0672680 | sp|Q9LZX1|LOR15_ARATH | 54.271 | 199 | 83 | 4 | 6 | 197 | 16 | 213 | 2.11e-73 | 224 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0672680 | G7JJK4 | 94.975 | 199 | 10 | 0 | 1 | 199 | 1 | 199 | 4.44e-138 | 393 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0004480 | Msa0672680 | 0.821895 | 3.164943e-53 | -8.615850e-47 |
Msa0672680 | Msa0931500 | 0.868214 | 7.712484e-66 | -8.615850e-47 |
Msa0585240 | Msa0672680 | 0.919165 | 6.325010e-87 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0672680 | MtrunA17_Chr4g0013291 | 94.975 | 199 | 10 | 0 | 1 | 199 | 1 | 199 | 8.55e-142 | 393 |
Msa0672680 | MtrunA17_Chr7g0244371 | 61.579 | 190 | 68 | 2 | 12 | 197 | 19 | 207 | 9.95e-84 | 247 |
Msa0672680 | MtrunA17_Chr7g0244321 | 61.257 | 191 | 68 | 3 | 13 | 198 | 21 | 210 | 6.74e-83 | 244 |
Msa0672680 | MtrunA17_Chr7g0244331 | 61.458 | 192 | 68 | 3 | 11 | 197 | 19 | 209 | 1.15e-82 | 244 |
Msa0672680 | MtrunA17_Chr7g0244341 | 59.788 | 189 | 70 | 3 | 15 | 198 | 23 | 210 | 1.06e-79 | 237 |
Msa0672680 | MtrunA17_Chr7g0244361 | 54.271 | 199 | 79 | 3 | 12 | 200 | 44 | 240 | 3.82e-73 | 221 |
Msa0672680 | MtrunA17_Chr7g0244111 | 65.254 | 118 | 41 | 0 | 80 | 197 | 4 | 121 | 2.33e-57 | 177 |
Msa0672680 | MtrunA17_Chr1g0150081 | 43.386 | 189 | 92 | 6 | 13 | 192 | 3 | 185 | 2.88e-41 | 138 |
Msa0672680 | MtrunA17_Chr2g0333101 | 32.749 | 171 | 98 | 7 | 39 | 199 | 43 | 206 | 5.88e-23 | 92.0 |
Msa0672680 | MtrunA17_Chr2g0333111 | 30.769 | 169 | 104 | 6 | 39 | 199 | 44 | 207 | 3.90e-19 | 82.0 |
Msa0672680 | MtrunA17_Chr4g0003271 | 26.396 | 197 | 131 | 7 | 10 | 197 | 2 | 193 | 1.14e-18 | 80.5 |
Msa0672680 | MtrunA17_Chr1g0150091 | 38.095 | 126 | 57 | 5 | 83 | 192 | 11 | 131 | 3.94e-14 | 66.6 |
Msa0672680 | MtrunA17_Chr1g0150101 | 43.038 | 79 | 41 | 2 | 114 | 192 | 5 | 79 | 2.66e-12 | 60.1 |
Msa0672680 | MtrunA17_Chr5g0432221 | 31.159 | 138 | 86 | 4 | 57 | 191 | 80 | 211 | 5.38e-12 | 62.4 |
Msa0672680 | MtrunA17_Chr8g0387561 | 27.011 | 174 | 106 | 7 | 41 | 194 | 59 | 231 | 3.49e-11 | 60.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0672680 | AT5G01750.2 | 54.271 | 199 | 83 | 4 | 6 | 197 | 16 | 213 | 2.14e-74 | 224 |
Msa0672680 | AT3G11740.1 | 49.741 | 193 | 90 | 4 | 14 | 200 | 2 | 193 | 7.94e-64 | 196 |
Msa0672680 | AT1G33840.1 | 49.730 | 185 | 87 | 3 | 15 | 194 | 27 | 210 | 5.90e-58 | 182 |
Msa0672680 | AT2G14560.1 | 49.733 | 187 | 88 | 3 | 15 | 196 | 7 | 192 | 7.28e-58 | 181 |
Msa0672680 | AT2G14560.3 | 49.733 | 187 | 88 | 3 | 15 | 196 | 67 | 252 | 1.26e-56 | 180 |
Msa0672680 | AT5G01750.1 | 52.532 | 158 | 67 | 4 | 6 | 156 | 16 | 172 | 1.09e-52 | 167 |
Msa0672680 | AT2G14560.2 | 51.351 | 148 | 66 | 3 | 15 | 157 | 7 | 153 | 5.50e-45 | 147 |
Msa0672680 | AT2G14560.4 | 51.351 | 148 | 66 | 3 | 15 | 157 | 67 | 213 | 1.06e-43 | 146 |
Msa0672680 | AT1G33840.2 | 47.973 | 148 | 71 | 3 | 15 | 157 | 27 | 173 | 1.04e-40 | 137 |
Msa0672680 | AT3G16900.1 | 33.500 | 200 | 108 | 6 | 1 | 195 | 1 | 180 | 1.33e-34 | 121 |
Msa0672680 | AT3G56180.2 | 26.633 | 199 | 137 | 4 | 2 | 193 | 5 | 201 | 6.41e-22 | 89.4 |
Msa0672680 | AT3G15810.1 | 30.909 | 165 | 103 | 4 | 39 | 197 | 45 | 204 | 9.34e-22 | 89.0 |
Msa0672680 | AT3G56180.1 | 26.131 | 199 | 136 | 5 | 2 | 193 | 5 | 199 | 1.25e-19 | 83.2 |
Msa0672680 | AT1G80120.1 | 30.357 | 168 | 103 | 5 | 39 | 197 | 31 | 193 | 4.38e-16 | 73.9 |
Msa0672680 | AT3G10986.1 | 24.737 | 190 | 131 | 6 | 15 | 193 | 4 | 192 | 2.58e-12 | 63.5 |
Msa0672680 | AT2G38640.1 | 28.221 | 163 | 105 | 6 | 38 | 194 | 36 | 192 | 1.03e-11 | 61.6 |
Find 26 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGAAAGATAATCTCACGGTT+AGG | 0.384584 | 4_4:+17996926 | Msa0672680:CDS |
GTGTTCAAAGTGTTGCGTTT+GGG | 0.407302 | 4_4:+17996905 | Msa0672680:CDS |
CTTCTTTAGTATTACTAGCT+AGG | 0.413877 | 4_4:-17996644 | None:intergenic |
CTGTTGACCTATCAATTGTA+AGG | 0.415763 | 4_4:+17996228 | Msa0672680:CDS |
AGTGTTCAAAGTGTTGCGTT+TGG | 0.433678 | 4_4:+17996904 | Msa0672680:CDS |
TGACATTCCTTACAATTGAT+AGG | 0.450507 | 4_4:-17996235 | None:intergenic |
GTAAGAGACTGTGATCATAA+AGG | 0.456930 | 4_4:-17996322 | None:intergenic |
TGTGATCATAAAGGAATTTG+AGG | 0.464343 | 4_4:-17996313 | None:intergenic |
CGATCTTGTGTTGTTTATGC+TGG | 0.470752 | 4_4:+17996705 | Msa0672680:CDS |
GAAAGATAATCTCACGGTTA+GGG | 0.472008 | 4_4:+17996927 | Msa0672680:CDS |
CAATGACGGGACATGATAGA+TGG | 0.479331 | 4_4:+17996526 | Msa0672680:CDS |
TTGATTGTAGATGCATAAGA+AGG | 0.480843 | 4_4:+17996879 | Msa0672680:intron |
ATGAATGCATAGTCAATGTT+GGG | 0.488228 | 4_4:-17996955 | None:intergenic |
ATCTCATCACATTGTTGCCC+AGG | 0.500173 | 4_4:+17996731 | Msa0672680:CDS |
GATGAATGCATAGTCAATGT+TGG | 0.514312 | 4_4:-17996956 | None:intergenic |
AATTATGAGAGTGGTATCAT+TGG | 0.521876 | 4_4:+17996182 | Msa0672680:CDS |
TTTCTTATACAGGCAATGAC+GGG | 0.543853 | 4_4:+17996513 | Msa0672680:intron |
AGTCTCTTACTTGATGCAGC+TGG | 0.550594 | 4_4:+17996335 | Msa0672680:CDS |
TGTCATGACGCTGCGACGAA+AGG | 0.555705 | 4_4:+17996367 | Msa0672680:CDS |
ATTGATAGGTCAACAGAATG+AGG | 0.558385 | 4_4:-17996221 | None:intergenic |
ACTCTCATAATTTGCTGCAG+AGG | 0.575251 | 4_4:-17996171 | None:intergenic |
GAATGAGGAACACGATATTG+AGG | 0.585084 | 4_4:-17996206 | None:intergenic |
TCTGCAGCAAATTATGAGAG+TGG | 0.622628 | 4_4:+17996173 | Msa0672680:CDS |
TTTGATCTTTGTTTGAAACA+TGG | 0.637933 | 4_4:-17996610 | None:intergenic |
GTTTGGGAAAGATAATCTCA+CGG | 0.663482 | 4_4:+17996921 | Msa0672680:CDS |
CATTGACTATGCATTCATCG+TGG | 0.756924 | 4_4:+17996960 | Msa0672680:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAAAAAAATTGCATTATTAA+TGG | - | chr4_4:17996811-17996830 | None:intergenic | 10.0% |
!! | TAAAAAAATTGCATTATTAA+TGG | - | chr4_4:17996811-17996830 | None:intergenic | 10.0% |
!! | ACGGTAAAATTTTCTTATAC+AGG | + | chr4_4:17996503-17996522 | Msa0672680:intron | 25.0% |
!! | TTTGATCTTTGTTTGAAACA+TGG | - | chr4_4:17996613-17996632 | None:intergenic | 25.0% |
!! | AGAAGATACTAGTGATTTTA+AGG | + | chr4_4:17996662-17996681 | Msa0672680:CDS | 25.0% |
!! | TAAACTTGCTTCTATAGAAA+GGG | - | chr4_4:17996763-17996782 | None:intergenic | 25.0% |
!! | ATAAACTTGCTTCTATAGAA+AGG | - | chr4_4:17996764-17996783 | None:intergenic | 25.0% |
!! | ACGGTAAAATTTTCTTATAC+AGG | + | chr4_4:17996503-17996522 | Msa0672680:intron | 25.0% |
!! | TTTGATCTTTGTTTGAAACA+TGG | - | chr4_4:17996613-17996632 | None:intergenic | 25.0% |
!! | AGAAGATACTAGTGATTTTA+AGG | + | chr4_4:17996662-17996681 | Msa0672680:CDS | 25.0% |
!! | TAAACTTGCTTCTATAGAAA+GGG | - | chr4_4:17996763-17996782 | None:intergenic | 25.0% |
!! | ATAAACTTGCTTCTATAGAA+AGG | - | chr4_4:17996764-17996783 | None:intergenic | 25.0% |
AATTATGAGAGTGGTATCAT+TGG | + | chr4_4:17996182-17996201 | Msa0672680:CDS | 30.0% | |
TGACATTCCTTACAATTGAT+AGG | - | chr4_4:17996238-17996257 | None:intergenic | 30.0% | |
! | TTCACAGTCACAGATTTTAA+TGG | + | chr4_4:17996275-17996294 | Msa0672680:CDS | 30.0% |
TGTGATCATAAAGGAATTTG+AGG | - | chr4_4:17996316-17996335 | None:intergenic | 30.0% | |
CAAAAATGATCAAAATACGC+AGG | - | chr4_4:17996418-17996437 | None:intergenic | 30.0% | |
! | TTTTCTTATACAGGCAATGA+CGG | + | chr4_4:17996512-17996531 | Msa0672680:intron | 30.0% |
CTTCTTTAGTATTACTAGCT+AGG | - | chr4_4:17996647-17996666 | None:intergenic | 30.0% | |
!!! | ACTAGTGATTTTAAGGTCAA+AGG | + | chr4_4:17996669-17996688 | Msa0672680:CDS | 30.0% |
!!! | ATTTTAAGGTCAAAGGAAGT+TGG | + | chr4_4:17996676-17996695 | Msa0672680:CDS | 30.0% |
TTGATTGTAGATGCATAAGA+AGG | + | chr4_4:17996879-17996898 | Msa0672680:intron | 30.0% | |
ATGAATGCATAGTCAATGTT+GGG | - | chr4_4:17996958-17996977 | None:intergenic | 30.0% | |
AATTATGAGAGTGGTATCAT+TGG | + | chr4_4:17996182-17996201 | Msa0672680:CDS | 30.0% | |
TGACATTCCTTACAATTGAT+AGG | - | chr4_4:17996238-17996257 | None:intergenic | 30.0% | |
! | TTCACAGTCACAGATTTTAA+TGG | + | chr4_4:17996275-17996294 | Msa0672680:CDS | 30.0% |
TGTGATCATAAAGGAATTTG+AGG | - | chr4_4:17996316-17996335 | None:intergenic | 30.0% | |
CAAAAATGATCAAAATACGC+AGG | - | chr4_4:17996418-17996437 | None:intergenic | 30.0% | |
! | TTTTCTTATACAGGCAATGA+CGG | + | chr4_4:17996512-17996531 | Msa0672680:intron | 30.0% |
CTTCTTTAGTATTACTAGCT+AGG | - | chr4_4:17996647-17996666 | None:intergenic | 30.0% | |
!!! | ACTAGTGATTTTAAGGTCAA+AGG | + | chr4_4:17996669-17996688 | Msa0672680:CDS | 30.0% |
!!! | ATTTTAAGGTCAAAGGAAGT+TGG | + | chr4_4:17996676-17996695 | Msa0672680:CDS | 30.0% |
TTGATTGTAGATGCATAAGA+AGG | + | chr4_4:17996879-17996898 | Msa0672680:intron | 30.0% | |
ATGAATGCATAGTCAATGTT+GGG | - | chr4_4:17996958-17996977 | None:intergenic | 30.0% | |
ATTGATAGGTCAACAGAATG+AGG | - | chr4_4:17996224-17996243 | None:intergenic | 35.0% | |
CTGTTGACCTATCAATTGTA+AGG | + | chr4_4:17996228-17996247 | Msa0672680:CDS | 35.0% | |
GTAAGAGACTGTGATCATAA+AGG | - | chr4_4:17996325-17996344 | None:intergenic | 35.0% | |
TTTCTTATACAGGCAATGAC+GGG | + | chr4_4:17996513-17996532 | Msa0672680:intron | 35.0% | |
GTTTGGGAAAGATAATCTCA+CGG | + | chr4_4:17996921-17996940 | Msa0672680:CDS | 35.0% | |
GAAAGATAATCTCACGGTTA+GGG | + | chr4_4:17996927-17996946 | Msa0672680:CDS | 35.0% | |
GATGAATGCATAGTCAATGT+TGG | - | chr4_4:17996959-17996978 | None:intergenic | 35.0% | |
ATTGATAGGTCAACAGAATG+AGG | - | chr4_4:17996224-17996243 | None:intergenic | 35.0% | |
CTGTTGACCTATCAATTGTA+AGG | + | chr4_4:17996228-17996247 | Msa0672680:CDS | 35.0% | |
GTAAGAGACTGTGATCATAA+AGG | - | chr4_4:17996325-17996344 | None:intergenic | 35.0% | |
TTTCTTATACAGGCAATGAC+GGG | + | chr4_4:17996513-17996532 | Msa0672680:intron | 35.0% | |
GTTTGGGAAAGATAATCTCA+CGG | + | chr4_4:17996921-17996940 | Msa0672680:CDS | 35.0% | |
GAAAGATAATCTCACGGTTA+GGG | + | chr4_4:17996927-17996946 | Msa0672680:CDS | 35.0% | |
GATGAATGCATAGTCAATGT+TGG | - | chr4_4:17996959-17996978 | None:intergenic | 35.0% | |
!! | ACTCTCATAATTTGCTGCAG+AGG | - | chr4_4:17996174-17996193 | None:intergenic | 40.0% |
TCTGCAGCAAATTATGAGAG+TGG | + | chr4_4:17996173-17996192 | Msa0672680:CDS | 40.0% | |
GAATGAGGAACACGATATTG+AGG | - | chr4_4:17996209-17996228 | None:intergenic | 40.0% | |
!! | AGCTTTTCGAGGTGAAAGTA+CGG | + | chr4_4:17996551-17996570 | Msa0672680:CDS | 40.0% |
!! | CGATCTTGTGTTGTTTATGC+TGG | + | chr4_4:17996705-17996724 | Msa0672680:CDS | 40.0% |
TATAGAAAGGGTCCTTACCT+GGG | - | chr4_4:17996751-17996770 | None:intergenic | 40.0% | |
!! | AGTGTTCAAAGTGTTGCGTT+TGG | + | chr4_4:17996904-17996923 | Msa0672680:CDS | 40.0% |
!! | GTGTTCAAAGTGTTGCGTTT+GGG | + | chr4_4:17996905-17996924 | Msa0672680:CDS | 40.0% |
GGAAAGATAATCTCACGGTT+AGG | + | chr4_4:17996926-17996945 | Msa0672680:CDS | 40.0% | |
! | CATTGACTATGCATTCATCG+TGG | + | chr4_4:17996960-17996979 | Msa0672680:CDS | 40.0% |
! | GTTGTTGTCGTGTTTTGTCT+TGG | - | chr4_4:17997014-17997033 | None:intergenic | 40.0% |
!! | ACTCTCATAATTTGCTGCAG+AGG | - | chr4_4:17996174-17996193 | None:intergenic | 40.0% |
TCTGCAGCAAATTATGAGAG+TGG | + | chr4_4:17996173-17996192 | Msa0672680:CDS | 40.0% | |
GAATGAGGAACACGATATTG+AGG | - | chr4_4:17996209-17996228 | None:intergenic | 40.0% | |
!! | AGCTTTTCGAGGTGAAAGTA+CGG | + | chr4_4:17996551-17996570 | Msa0672680:CDS | 40.0% |
!! | CGATCTTGTGTTGTTTATGC+TGG | + | chr4_4:17996705-17996724 | Msa0672680:CDS | 40.0% |
TATAGAAAGGGTCCTTACCT+GGG | - | chr4_4:17996751-17996770 | None:intergenic | 40.0% | |
!! | AGTGTTCAAAGTGTTGCGTT+TGG | + | chr4_4:17996904-17996923 | Msa0672680:CDS | 40.0% |
!! | GTGTTCAAAGTGTTGCGTTT+GGG | + | chr4_4:17996905-17996924 | Msa0672680:CDS | 40.0% |
GGAAAGATAATCTCACGGTT+AGG | + | chr4_4:17996926-17996945 | Msa0672680:CDS | 40.0% | |
! | CATTGACTATGCATTCATCG+TGG | + | chr4_4:17996960-17996979 | Msa0672680:CDS | 40.0% |
! | GTTGTTGTCGTGTTTTGTCT+TGG | - | chr4_4:17997014-17997033 | None:intergenic | 40.0% |
AGTCTCTTACTTGATGCAGC+TGG | + | chr4_4:17996335-17996354 | Msa0672680:CDS | 45.0% | |
! | CAATGACGGGACATGATAGA+TGG | + | chr4_4:17996526-17996545 | Msa0672680:CDS | 45.0% |
! | GATAGATGGCAAGCTTTTCG+AGG | + | chr4_4:17996540-17996559 | Msa0672680:CDS | 45.0% |
!! | TTTTCGAGGTGAAAGTACGG+AGG | + | chr4_4:17996554-17996573 | Msa0672680:CDS | 45.0% |
ATCTCATCACATTGTTGCCC+AGG | + | chr4_4:17996731-17996750 | Msa0672680:CDS | 45.0% | |
ATCACATTGTTGCCCAGGTA+AGG | + | chr4_4:17996736-17996755 | Msa0672680:intron | 45.0% | |
CTATAGAAAGGGTCCTTACC+TGG | - | chr4_4:17996752-17996771 | None:intergenic | 45.0% | |
AGTCTCTTACTTGATGCAGC+TGG | + | chr4_4:17996335-17996354 | Msa0672680:CDS | 45.0% | |
! | CAATGACGGGACATGATAGA+TGG | + | chr4_4:17996526-17996545 | Msa0672680:CDS | 45.0% |
! | GATAGATGGCAAGCTTTTCG+AGG | + | chr4_4:17996540-17996559 | Msa0672680:CDS | 45.0% |
!! | TTTTCGAGGTGAAAGTACGG+AGG | + | chr4_4:17996554-17996573 | Msa0672680:CDS | 45.0% |
ATCTCATCACATTGTTGCCC+AGG | + | chr4_4:17996731-17996750 | Msa0672680:CDS | 45.0% | |
ATCACATTGTTGCCCAGGTA+AGG | + | chr4_4:17996736-17996755 | Msa0672680:intron | 45.0% | |
CTATAGAAAGGGTCCTTACC+TGG | - | chr4_4:17996752-17996771 | None:intergenic | 45.0% | |
!!! | AGATTAATATTTTATTTAAA+CGG | + | chr4_4:17996484-17996503 | Msa0672680:intron | 5.0% |
!!! | AGATTAATATTTTATTTAAA+CGG | + | chr4_4:17996484-17996503 | Msa0672680:intron | 5.0% |
TGTCATGACGCTGCGACGAA+AGG | + | chr4_4:17996367-17996386 | Msa0672680:CDS | 55.0% | |
TGTCATGACGCTGCGACGAA+AGG | + | chr4_4:17996367-17996386 | Msa0672680:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_4 | gene | 17996155 | 17997038 | 17996155 | ID=Msa0672680;Name=Msa0672680 |
chr4_4 | mRNA | 17996155 | 17997038 | 17996155 | ID=Msa0672680-mRNA-1;Parent=Msa0672680;Name=Msa0672680-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0|1|1|1|3|0|203 |
chr4_4 | exon | 17996155 | 17996388 | 17996155 | ID=Msa0672680-mRNA-1:exon:5257;Parent=Msa0672680-mRNA-1 |
chr4_4 | exon | 17996525 | 17996752 | 17996525 | ID=Msa0672680-mRNA-1:exon:5258;Parent=Msa0672680-mRNA-1 |
chr4_4 | exon | 17996889 | 17997038 | 17996889 | ID=Msa0672680-mRNA-1:exon:5259;Parent=Msa0672680-mRNA-1 |
chr4_4 | CDS | 17996155 | 17996388 | 17996155 | ID=Msa0672680-mRNA-1:cds;Parent=Msa0672680-mRNA-1 |
chr4_4 | CDS | 17996525 | 17996752 | 17996525 | ID=Msa0672680-mRNA-1:cds;Parent=Msa0672680-mRNA-1 |
chr4_4 | CDS | 17996889 | 17997038 | 17996889 | ID=Msa0672680-mRNA-1:cds;Parent=Msa0672680-mRNA-1 |
Gene Sequence |
Protein sequence |