Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0585240 | XP_003605353.1 | 94.975 | 199 | 10 | 0 | 1 | 199 | 1 | 199 | 9.30e-138 | 393 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0585240 | sp|Q9LZX1|LOR15_ARATH | 54.271 | 199 | 83 | 4 | 6 | 197 | 16 | 213 | 2.11e-73 | 224 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0004480 | Msa0585240 | 0.824347 | 8.480241e-54 | -8.615850e-47 |
Msa0584580 | Msa0585240 | 0.806267 | 8.937134e-50 | -8.615850e-47 |
Msa0585240 | Msa0672680 | 0.919165 | 6.325010e-87 | -8.615850e-47 |
Msa0585240 | Msa0931500 | 0.800047 | 1.730569e-48 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0585240 | MtrunA17_Chr4g0013291 | 94.975 | 199 | 10 | 0 | 1 | 199 | 1 | 199 | 8.55e-142 | 393 |
Msa0585240 | MtrunA17_Chr7g0244371 | 61.579 | 190 | 68 | 2 | 12 | 197 | 19 | 207 | 9.95e-84 | 247 |
Msa0585240 | MtrunA17_Chr7g0244321 | 61.257 | 191 | 68 | 3 | 13 | 198 | 21 | 210 | 6.74e-83 | 244 |
Msa0585240 | MtrunA17_Chr7g0244331 | 61.458 | 192 | 68 | 3 | 11 | 197 | 19 | 209 | 1.15e-82 | 244 |
Msa0585240 | MtrunA17_Chr7g0244341 | 59.788 | 189 | 70 | 3 | 15 | 198 | 23 | 210 | 1.06e-79 | 237 |
Msa0585240 | MtrunA17_Chr7g0244361 | 54.271 | 199 | 79 | 3 | 12 | 200 | 44 | 240 | 3.82e-73 | 221 |
Msa0585240 | MtrunA17_Chr7g0244111 | 65.254 | 118 | 41 | 0 | 80 | 197 | 4 | 121 | 2.33e-57 | 177 |
Msa0585240 | MtrunA17_Chr1g0150081 | 43.386 | 189 | 92 | 6 | 13 | 192 | 3 | 185 | 2.88e-41 | 138 |
Msa0585240 | MtrunA17_Chr2g0333101 | 32.749 | 171 | 98 | 7 | 39 | 199 | 43 | 206 | 5.88e-23 | 92.0 |
Msa0585240 | MtrunA17_Chr2g0333111 | 30.769 | 169 | 104 | 6 | 39 | 199 | 44 | 207 | 3.90e-19 | 82.0 |
Msa0585240 | MtrunA17_Chr4g0003271 | 26.396 | 197 | 131 | 7 | 10 | 197 | 2 | 193 | 1.14e-18 | 80.5 |
Msa0585240 | MtrunA17_Chr1g0150091 | 38.095 | 126 | 57 | 5 | 83 | 192 | 11 | 131 | 3.94e-14 | 66.6 |
Msa0585240 | MtrunA17_Chr1g0150101 | 43.038 | 79 | 41 | 2 | 114 | 192 | 5 | 79 | 2.66e-12 | 60.1 |
Msa0585240 | MtrunA17_Chr5g0432221 | 31.159 | 138 | 86 | 4 | 57 | 191 | 80 | 211 | 5.38e-12 | 62.4 |
Msa0585240 | MtrunA17_Chr8g0387561 | 27.011 | 174 | 106 | 7 | 41 | 194 | 59 | 231 | 3.49e-11 | 60.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0585240 | AT5G01750.2 | 54.271 | 199 | 83 | 4 | 6 | 197 | 16 | 213 | 2.14e-74 | 224 |
Msa0585240 | AT3G11740.1 | 49.741 | 193 | 90 | 4 | 14 | 200 | 2 | 193 | 7.94e-64 | 196 |
Msa0585240 | AT1G33840.1 | 49.730 | 185 | 87 | 3 | 15 | 194 | 27 | 210 | 5.90e-58 | 182 |
Msa0585240 | AT2G14560.1 | 49.733 | 187 | 88 | 3 | 15 | 196 | 7 | 192 | 7.28e-58 | 181 |
Msa0585240 | AT2G14560.3 | 49.733 | 187 | 88 | 3 | 15 | 196 | 67 | 252 | 1.26e-56 | 180 |
Msa0585240 | AT5G01750.1 | 52.532 | 158 | 67 | 4 | 6 | 156 | 16 | 172 | 1.09e-52 | 167 |
Msa0585240 | AT2G14560.2 | 51.351 | 148 | 66 | 3 | 15 | 157 | 7 | 153 | 5.50e-45 | 147 |
Msa0585240 | AT2G14560.4 | 51.351 | 148 | 66 | 3 | 15 | 157 | 67 | 213 | 1.06e-43 | 146 |
Msa0585240 | AT1G33840.2 | 47.973 | 148 | 71 | 3 | 15 | 157 | 27 | 173 | 1.04e-40 | 137 |
Msa0585240 | AT3G16900.1 | 33.500 | 200 | 108 | 6 | 1 | 195 | 1 | 180 | 1.33e-34 | 121 |
Msa0585240 | AT3G56180.2 | 26.633 | 199 | 137 | 4 | 2 | 193 | 5 | 201 | 6.41e-22 | 89.4 |
Msa0585240 | AT3G15810.1 | 30.909 | 165 | 103 | 4 | 39 | 197 | 45 | 204 | 9.34e-22 | 89.0 |
Msa0585240 | AT3G56180.1 | 26.131 | 199 | 136 | 5 | 2 | 193 | 5 | 199 | 1.25e-19 | 83.2 |
Msa0585240 | AT1G80120.1 | 30.357 | 168 | 103 | 5 | 39 | 197 | 31 | 193 | 4.38e-16 | 73.9 |
Msa0585240 | AT3G10986.1 | 24.737 | 190 | 131 | 6 | 15 | 193 | 4 | 192 | 2.58e-12 | 63.5 |
Msa0585240 | AT2G38640.1 | 28.221 | 163 | 105 | 6 | 38 | 194 | 36 | 192 | 1.03e-11 | 61.6 |
Find 26 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGAAAGATAATCTCACGGTT+AGG | 0.384584 | 4_2:-5763596 | Msa0585240:CDS |
GTGTTCAAAGTGTTGCGTTT+GGG | 0.407302 | 4_2:-5763617 | Msa0585240:CDS |
CTTCTTTAGTATTACTAGCT+AGG | 0.413877 | 4_2:+5763877 | None:intergenic |
CTGTTGACCTATCAATTGTA+AGG | 0.415763 | 4_2:-5764291 | Msa0585240:CDS |
AGTGTTCAAAGTGTTGCGTT+TGG | 0.433678 | 4_2:-5763618 | Msa0585240:CDS |
TGACATTCCTTACAATTGAT+AGG | 0.450507 | 4_2:+5764284 | None:intergenic |
GTAAGAGACTGTGATCATAA+AGG | 0.456930 | 4_2:+5764197 | None:intergenic |
TGTGATCATAAAGGAATTTG+AGG | 0.464343 | 4_2:+5764206 | None:intergenic |
CGATCTTGTGTTGTTTATGC+TGG | 0.470752 | 4_2:-5763816 | Msa0585240:CDS |
GAAAGATAATCTCACGGTTA+GGG | 0.472008 | 4_2:-5763595 | Msa0585240:CDS |
CAATGACGGGACATGATAGA+TGG | 0.479331 | 4_2:-5763995 | Msa0585240:CDS |
TTGATTGTAGATGCATAAGA+AGG | 0.480843 | 4_2:-5763643 | Msa0585240:intron |
ATGAATGCATAGTCAATGTT+GGG | 0.488228 | 4_2:+5763567 | None:intergenic |
ATCTCATCACATTGTTGCCC+AGG | 0.500173 | 4_2:-5763790 | Msa0585240:intron |
GATGAATGCATAGTCAATGT+TGG | 0.514312 | 4_2:+5763566 | None:intergenic |
AATTATGAGAGTGGTATCAT+TGG | 0.521876 | 4_2:-5764337 | Msa0585240:CDS |
TTTCTTATACAGGCAATGAC+GGG | 0.543853 | 4_2:-5764008 | Msa0585240:intron |
AGTCTCTTACTTGATGCAGC+TGG | 0.550594 | 4_2:-5764184 | Msa0585240:CDS |
TGTCATGACGCTGCGACGAA+AGG | 0.555705 | 4_2:-5764152 | Msa0585240:intron |
ATTGATAGGTCAACAGAATG+AGG | 0.558385 | 4_2:+5764298 | None:intergenic |
ACTCTCATAATTTGCTGCAG+AGG | 0.575251 | 4_2:+5764348 | None:intergenic |
GAATGAGGAACACGATATTG+AGG | 0.585084 | 4_2:+5764313 | None:intergenic |
TCTGCAGCAAATTATGAGAG+TGG | 0.622628 | 4_2:-5764346 | Msa0585240:CDS |
TTTGATCTTTGTTTGAAACA+TGG | 0.637933 | 4_2:+5763911 | None:intergenic |
GTTTGGGAAAGATAATCTCA+CGG | 0.663482 | 4_2:-5763601 | Msa0585240:CDS |
CATTGACTATGCATTCATCG+TGG | 0.756924 | 4_2:-5763562 | Msa0585240:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAAAAAATTGCATTATTAA+TGG | + | chr4_2:5764160-5764179 | None:intergenic | 10.0% |
!! | ATAAAAAATTGCATTATTAA+TGG | + | chr4_2:5764160-5764179 | None:intergenic | 10.0% |
!! | TAAAAAATGATAAAATACGC+AGG | + | chr4_2:5763769-5763788 | None:intergenic | 20.0% |
!! | TAAAAAATGATAAAATACGC+AGG | + | chr4_2:5763769-5763788 | None:intergenic | 20.0% |
!! | ACGGTAAAATTTTCTTATAC+AGG | - | chr4_2:5763852-5763871 | Msa0585240:CDS | 25.0% |
!! | TTTGATCTTTGTTTGAAACA+TGG | + | chr4_2:5763962-5763981 | None:intergenic | 25.0% |
!! | AGAAGATACTAGTGATTTTA+AGG | - | chr4_2:5764011-5764030 | Msa0585240:intron | 25.0% |
!! | TAAACTTGCTTCTATAGAAA+GGG | + | chr4_2:5764112-5764131 | None:intergenic | 25.0% |
!! | ATAAACTTGCTTCTATAGAA+AGG | + | chr4_2:5764113-5764132 | None:intergenic | 25.0% |
!! | ACGGTAAAATTTTCTTATAC+AGG | - | chr4_2:5763852-5763871 | Msa0585240:CDS | 25.0% |
!! | TTTGATCTTTGTTTGAAACA+TGG | + | chr4_2:5763962-5763981 | None:intergenic | 25.0% |
!! | AGAAGATACTAGTGATTTTA+AGG | - | chr4_2:5764011-5764030 | Msa0585240:intron | 25.0% |
!! | TAAACTTGCTTCTATAGAAA+GGG | + | chr4_2:5764112-5764131 | None:intergenic | 25.0% |
!! | ATAAACTTGCTTCTATAGAA+AGG | + | chr4_2:5764113-5764132 | None:intergenic | 25.0% |
AATTATGAGAGTGGTATCAT+TGG | - | chr4_2:5763533-5763552 | Msa0585240:CDS | 30.0% | |
TGACATTCCTTACAATTGAT+AGG | + | chr4_2:5763589-5763608 | None:intergenic | 30.0% | |
! | TTCACAGTCACAGATTTTAA+TGG | - | chr4_2:5763626-5763645 | Msa0585240:CDS | 30.0% |
TGTGATCATAAAGGAATTTG+AGG | + | chr4_2:5763667-5763686 | None:intergenic | 30.0% | |
! | TTTTCTTATACAGGCAATGA+CGG | - | chr4_2:5763861-5763880 | Msa0585240:CDS | 30.0% |
CTTCTTTAGTATTACTAGCT+AGG | + | chr4_2:5763996-5764015 | None:intergenic | 30.0% | |
!!! | ACTAGTGATTTTAAGGTCAA+AGG | - | chr4_2:5764018-5764037 | Msa0585240:intron | 30.0% |
!!! | ATTTTAAGGTCAAAGGAAGT+TGG | - | chr4_2:5764025-5764044 | Msa0585240:intron | 30.0% |
TTGATTGTAGATGCATAAGA+AGG | - | chr4_2:5764227-5764246 | Msa0585240:CDS | 30.0% | |
ATGAATGCATAGTCAATGTT+GGG | + | chr4_2:5764306-5764325 | None:intergenic | 30.0% | |
AATTATGAGAGTGGTATCAT+TGG | - | chr4_2:5763533-5763552 | Msa0585240:CDS | 30.0% | |
TGACATTCCTTACAATTGAT+AGG | + | chr4_2:5763589-5763608 | None:intergenic | 30.0% | |
! | TTCACAGTCACAGATTTTAA+TGG | - | chr4_2:5763626-5763645 | Msa0585240:CDS | 30.0% |
TGTGATCATAAAGGAATTTG+AGG | + | chr4_2:5763667-5763686 | None:intergenic | 30.0% | |
! | TTTTCTTATACAGGCAATGA+CGG | - | chr4_2:5763861-5763880 | Msa0585240:CDS | 30.0% |
CTTCTTTAGTATTACTAGCT+AGG | + | chr4_2:5763996-5764015 | None:intergenic | 30.0% | |
!!! | ACTAGTGATTTTAAGGTCAA+AGG | - | chr4_2:5764018-5764037 | Msa0585240:intron | 30.0% |
!!! | ATTTTAAGGTCAAAGGAAGT+TGG | - | chr4_2:5764025-5764044 | Msa0585240:intron | 30.0% |
TTGATTGTAGATGCATAAGA+AGG | - | chr4_2:5764227-5764246 | Msa0585240:CDS | 30.0% | |
ATGAATGCATAGTCAATGTT+GGG | + | chr4_2:5764306-5764325 | None:intergenic | 30.0% | |
ATTGATAGGTCAACAGAATG+AGG | + | chr4_2:5763575-5763594 | None:intergenic | 35.0% | |
CTGTTGACCTATCAATTGTA+AGG | - | chr4_2:5763579-5763598 | Msa0585240:CDS | 35.0% | |
GTAAGAGACTGTGATCATAA+AGG | + | chr4_2:5763676-5763695 | None:intergenic | 35.0% | |
TTTCTTATACAGGCAATGAC+GGG | - | chr4_2:5763862-5763881 | Msa0585240:CDS | 35.0% | |
GTTTGGGAAAGATAATCTCA+CGG | - | chr4_2:5764269-5764288 | Msa0585240:CDS | 35.0% | |
GAAAGATAATCTCACGGTTA+GGG | - | chr4_2:5764275-5764294 | Msa0585240:CDS | 35.0% | |
GATGAATGCATAGTCAATGT+TGG | + | chr4_2:5764307-5764326 | None:intergenic | 35.0% | |
ATTGATAGGTCAACAGAATG+AGG | + | chr4_2:5763575-5763594 | None:intergenic | 35.0% | |
CTGTTGACCTATCAATTGTA+AGG | - | chr4_2:5763579-5763598 | Msa0585240:CDS | 35.0% | |
GTAAGAGACTGTGATCATAA+AGG | + | chr4_2:5763676-5763695 | None:intergenic | 35.0% | |
TTTCTTATACAGGCAATGAC+GGG | - | chr4_2:5763862-5763881 | Msa0585240:CDS | 35.0% | |
GTTTGGGAAAGATAATCTCA+CGG | - | chr4_2:5764269-5764288 | Msa0585240:CDS | 35.0% | |
GAAAGATAATCTCACGGTTA+GGG | - | chr4_2:5764275-5764294 | Msa0585240:CDS | 35.0% | |
GATGAATGCATAGTCAATGT+TGG | + | chr4_2:5764307-5764326 | None:intergenic | 35.0% | |
!! | ACTCTCATAATTTGCTGCAG+AGG | + | chr4_2:5763525-5763544 | None:intergenic | 40.0% |
TCTGCAGCAAATTATGAGAG+TGG | - | chr4_2:5763524-5763543 | Msa0585240:CDS | 40.0% | |
GAATGAGGAACACGATATTG+AGG | + | chr4_2:5763560-5763579 | None:intergenic | 40.0% | |
!! | AGCTTTTCGAGGTGAAAGTA+CGG | - | chr4_2:5763900-5763919 | Msa0585240:CDS | 40.0% |
!! | CGATCTTGTGTTGTTTATGC+TGG | - | chr4_2:5764054-5764073 | Msa0585240:intron | 40.0% |
TATAGAAAGGGTCCTTACCT+GGG | + | chr4_2:5764100-5764119 | None:intergenic | 40.0% | |
!! | AGTGTTCAAAGTGTTGCGTT+TGG | - | chr4_2:5764252-5764271 | Msa0585240:CDS | 40.0% |
!! | GTGTTCAAAGTGTTGCGTTT+GGG | - | chr4_2:5764253-5764272 | Msa0585240:CDS | 40.0% |
GGAAAGATAATCTCACGGTT+AGG | - | chr4_2:5764274-5764293 | Msa0585240:CDS | 40.0% | |
! | CATTGACTATGCATTCATCG+TGG | - | chr4_2:5764308-5764327 | Msa0585240:CDS | 40.0% |
! | GTTGTTGTCGTGTTTTGTCT+TGG | + | chr4_2:5764362-5764381 | None:intergenic | 40.0% |
!! | ACTCTCATAATTTGCTGCAG+AGG | + | chr4_2:5763525-5763544 | None:intergenic | 40.0% |
TCTGCAGCAAATTATGAGAG+TGG | - | chr4_2:5763524-5763543 | Msa0585240:CDS | 40.0% | |
GAATGAGGAACACGATATTG+AGG | + | chr4_2:5763560-5763579 | None:intergenic | 40.0% | |
!! | AGCTTTTCGAGGTGAAAGTA+CGG | - | chr4_2:5763900-5763919 | Msa0585240:CDS | 40.0% |
!! | CGATCTTGTGTTGTTTATGC+TGG | - | chr4_2:5764054-5764073 | Msa0585240:intron | 40.0% |
TATAGAAAGGGTCCTTACCT+GGG | + | chr4_2:5764100-5764119 | None:intergenic | 40.0% | |
!! | AGTGTTCAAAGTGTTGCGTT+TGG | - | chr4_2:5764252-5764271 | Msa0585240:CDS | 40.0% |
!! | GTGTTCAAAGTGTTGCGTTT+GGG | - | chr4_2:5764253-5764272 | Msa0585240:CDS | 40.0% |
GGAAAGATAATCTCACGGTT+AGG | - | chr4_2:5764274-5764293 | Msa0585240:CDS | 40.0% | |
! | CATTGACTATGCATTCATCG+TGG | - | chr4_2:5764308-5764327 | Msa0585240:CDS | 40.0% |
! | GTTGTTGTCGTGTTTTGTCT+TGG | + | chr4_2:5764362-5764381 | None:intergenic | 40.0% |
AGTCTCTTACTTGATGCAGC+TGG | - | chr4_2:5763686-5763705 | Msa0585240:intron | 45.0% | |
! | CAATGACGGGACATGATAGA+TGG | - | chr4_2:5763875-5763894 | Msa0585240:CDS | 45.0% |
! | GATAGATGGCAAGCTTTTCG+AGG | - | chr4_2:5763889-5763908 | Msa0585240:CDS | 45.0% |
!! | TTTTCGAGGTGAAAGTACGG+AGG | - | chr4_2:5763903-5763922 | Msa0585240:CDS | 45.0% |
ATCTCATCACATTGTTGCCC+AGG | - | chr4_2:5764080-5764099 | Msa0585240:intron | 45.0% | |
ATCACATTGTTGCCCAGGTA+AGG | - | chr4_2:5764085-5764104 | Msa0585240:intron | 45.0% | |
CTATAGAAAGGGTCCTTACC+TGG | + | chr4_2:5764101-5764120 | None:intergenic | 45.0% | |
AGTCTCTTACTTGATGCAGC+TGG | - | chr4_2:5763686-5763705 | Msa0585240:intron | 45.0% | |
! | CAATGACGGGACATGATAGA+TGG | - | chr4_2:5763875-5763894 | Msa0585240:CDS | 45.0% |
! | GATAGATGGCAAGCTTTTCG+AGG | - | chr4_2:5763889-5763908 | Msa0585240:CDS | 45.0% |
!! | TTTTCGAGGTGAAAGTACGG+AGG | - | chr4_2:5763903-5763922 | Msa0585240:CDS | 45.0% |
ATCTCATCACATTGTTGCCC+AGG | - | chr4_2:5764080-5764099 | Msa0585240:intron | 45.0% | |
ATCACATTGTTGCCCAGGTA+AGG | - | chr4_2:5764085-5764104 | Msa0585240:intron | 45.0% | |
CTATAGAAAGGGTCCTTACC+TGG | + | chr4_2:5764101-5764120 | None:intergenic | 45.0% | |
!!! | AGATTAATATTTTTTTATAA+CGG | - | chr4_2:5763833-5763852 | Msa0585240:CDS | 5.0% |
!!! | AGATTAATATTTTTTTATAA+CGG | - | chr4_2:5763833-5763852 | Msa0585240:CDS | 5.0% |
TGTCATGACGCTGCGACGAA+AGG | - | chr4_2:5763718-5763737 | Msa0585240:intron | 55.0% | |
TGTCATGACGCTGCGACGAA+AGG | - | chr4_2:5763718-5763737 | Msa0585240:intron | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_2 | gene | 5763506 | 5764386 | 5763506 | ID=Msa0585240;Name=Msa0585240 |
chr4_2 | mRNA | 5763506 | 5764386 | 5763506 | ID=Msa0585240-mRNA-1;Parent=Msa0585240;Name=Msa0585240-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0|0|1|1|1|3|0|203 |
chr4_2 | exon | 5764153 | 5764386 | 5764153 | ID=Msa0585240-mRNA-1:exon:1409;Parent=Msa0585240-mRNA-1 |
chr4_2 | exon | 5763791 | 5764018 | 5763791 | ID=Msa0585240-mRNA-1:exon:1408;Parent=Msa0585240-mRNA-1 |
chr4_2 | exon | 5763506 | 5763655 | 5763506 | ID=Msa0585240-mRNA-1:exon:1407;Parent=Msa0585240-mRNA-1 |
chr4_2 | CDS | 5764153 | 5764386 | 5764153 | ID=Msa0585240-mRNA-1:cds;Parent=Msa0585240-mRNA-1 |
chr4_2 | CDS | 5763791 | 5764018 | 5763791 | ID=Msa0585240-mRNA-1:cds;Parent=Msa0585240-mRNA-1 |
chr4_2 | CDS | 5763506 | 5763655 | 5763506 | ID=Msa0585240-mRNA-1:cds;Parent=Msa0585240-mRNA-1 |
Gene Sequence |
Protein sequence |