AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0676460

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0676460 MtrunA17_Chr2g0332171 94.021 485 28 1 1 484 1 485 0.0 940
Msa0676460 MtrunA17_Chr2g0332181 66.874 483 101 6 3 484 5 429 0.0 605
Msa0676460 MtrunA17_Chr3g0138431 47.658 491 216 12 8 484 11 474 3.82e-129 383
Msa0676460 MtrunA17_Chr1g0148681 59.247 292 117 2 193 484 128 417 1.02e-114 344
Msa0676460 MtrunA17_Chr3g0125051 52.098 286 131 3 191 472 207 490 5.05e-97 301
Msa0676460 MtrunA17_Chr1g0152871 51.301 269 127 3 212 477 82 349 2.24e-92 285
Msa0676460 MtrunA17_Chr3g0125041 45.520 279 151 1 200 477 222 500 7.09e-86 273
Msa0676460 MtrunA17_Chr3g0134411 44.561 285 154 3 203 484 73 356 1.42e-75 242
Msa0676460 MtrunA17_Chr3g0134421 44.912 285 153 3 203 484 66 349 4.15e-75 240
Msa0676460 MtrunA17_Chr3g0134401 45.255 274 148 2 212 484 65 337 3.77e-73 234
Msa0676460 MtrunA17_Chr3g0134441 47.638 254 130 2 226 477 69 321 1.15e-68 222
Msa0676460 MtrunA17_Chr3g0134431 43.952 248 113 5 225 469 13 237 4.37e-56 187
Msa0676460 MtrunA17_Chr5g0406741 38.351 279 162 6 195 472 146 415 4.21e-53 184
Msa0676460 MtrunA17_Chr5g0441371 38.909 275 157 8 205 477 148 413 7.75e-53 184
Msa0676460 MtrunA17_Chr7g0255771 37.500 280 167 7 204 480 181 455 1.14e-52 184
Msa0676460 MtrunA17_Chr8g0370671 36.803 269 161 5 205 472 159 419 1.29e-48 172
Msa0676460 MtrunA17_Chr8g0357001 36.727 275 165 5 164 437 429 695 3.56e-47 174
Msa0676460 MtrunA17_Chr3g0102851 31.004 229 142 7 254 472 60 282 6.08e-24 101
Msa0676460 MtrunA17_Chr3g0103471 31.441 229 140 9 254 472 50 271 2.57e-21 94.0
Msa0676460 MtrunA17_Chr3g0102861 29.694 229 144 8 254 472 50 271 7.58e-21 92.4
Msa0676460 MtrunA17_Chr3g0102621 29.185 233 148 8 250 472 52 277 7.93e-21 92.4
Msa0676460 MtrunA17_Chr3g0102631 33.533 167 102 5 275 436 4 166 7.82e-19 85.1
Msa0676460 MtrunA17_Chr3g0102651 33.533 167 102 5 275 436 4 166 7.82e-19 85.1
Msa0676460 MtrunA17_Chr3g0102661 33.533 167 102 5 275 436 4 166 7.82e-19 85.1
Msa0676460 MtrunA17_Chr3g0102671 33.533 167 102 5 275 436 4 166 7.82e-19 85.1
Msa0676460 MtrunA17_Chr1g0161581 34.254 181 97 5 241 419 364 524 2.77e-16 81.3
Msa0676460 MtrunA17_Chr5g0418901 37.975 79 49 0 276 354 7 85 1.47e-14 69.3
Msa0676460 MtrunA17_Chr6g0462911 26.667 225 144 7 255 472 75 285 4.23e-12 67.0
Msa0676460 MtrunA17_Chr5g0398791 27.891 147 103 2 247 392 27 171 3.04e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0676460 AT1G80370.1 50.000 488 211 8 1 484 1 459 5.35e-152 441
Msa0676460 AT1G15570.1 51.446 484 192 14 8 484 3 450 3.02e-148 431
Msa0676460 AT5G11300.1 45.763 472 190 10 15 484 27 434 6.69e-129 381
Msa0676460 AT5G25380.3 62.718 287 106 1 198 484 150 435 4.85e-126 374
Msa0676460 AT5G25380.1 62.718 287 106 1 198 484 150 435 4.85e-126 374
Msa0676460 AT5G25380.4 62.718 287 106 1 198 484 156 441 7.48e-126 374
Msa0676460 AT5G25380.2 63.469 271 98 1 198 468 150 419 8.65e-121 360
Msa0676460 AT5G11300.2 44.743 409 161 9 15 421 27 372 7.25e-104 317
Msa0676460 AT1G44110.1 50.714 280 137 1 205 484 178 456 5.38e-96 298
Msa0676460 AT5G43080.1 50.357 280 137 2 206 484 72 350 1.02e-95 293
Msa0676460 AT1G47210.2 49.645 282 138 3 206 484 87 367 2.26e-95 293
Msa0676460 AT5G43080.2 50.714 280 131 3 206 484 72 345 5.20e-94 289
Msa0676460 AT1G77390.1 52.453 265 123 2 204 467 161 423 5.78e-92 287
Msa0676460 AT1G47230.1 49.270 274 135 3 214 484 88 360 4.99e-91 282
Msa0676460 AT1G47230.2 49.091 275 135 4 214 484 88 361 2.98e-89 277
Msa0676460 AT1G47220.1 47.601 271 139 2 206 474 41 310 1.39e-84 264
Msa0676460 AT5G06150.1 36.201 279 168 5 203 480 163 432 1.13e-49 176
Msa0676460 AT1G20610.1 36.713 286 168 9 195 477 149 424 3.07e-48 172
Msa0676460 AT1G76310.1 35.664 286 174 6 197 480 152 429 9.36e-47 168
Msa0676460 AT3G11520.1 35.254 295 179 5 189 480 124 409 2.86e-46 166
Msa0676460 AT4G37490.1 36.620 284 166 8 205 482 148 423 4.24e-46 166
Msa0676460 AT1G76310.2 39.241 237 135 5 197 431 152 381 3.25e-45 162
Msa0676460 AT3G11520.2 37.209 258 151 4 189 443 124 373 3.83e-45 162
Msa0676460 AT2G26760.1 37.591 274 161 7 205 476 113 378 2.07e-44 160
Msa0676460 AT2G17620.1 37.500 288 169 6 195 480 144 422 1.94e-43 159
Msa0676460 AT4G35620.1 37.175 269 160 5 205 472 155 415 1.30e-41 154
Msa0676460 AT1G76310.3 32.484 314 174 7 197 480 152 457 7.26e-41 152
Msa0676460 AT1G16330.1 35.055 271 161 6 171 437 345 604 2.14e-40 154
Msa0676460 AT4G35620.2 39.485 233 133 4 205 436 155 380 4.55e-39 146
Msa0676460 AT1G47210.1 54.717 106 46 1 206 309 87 192 3.19e-35 130
Msa0676460 AT1G76310.4 41.243 177 101 3 197 371 152 327 4.47e-35 134
Msa0676460 AT5G06150.2 36.842 171 105 2 199 368 159 327 1.09e-33 130
Msa0676460 AT1G20590.1 37.107 159 94 2 280 438 63 215 8.35e-28 112
Msa0676460 AT1G14750.2 39.394 165 90 5 250 410 214 372 7.62e-20 92.0
Msa0676460 AT1G14750.1 39.394 165 90 5 250 410 382 540 1.09e-19 92.4
Msa0676460 AT1G14750.3 39.394 165 90 5 250 410 382 540 1.36e-19 92.4
Msa0676460 AT1G14750.4 39.394 165 89 6 250 410 214 371 1.11e-18 88.6
Msa0676460 AT1G34460.2 26.042 192 117 4 176 366 225 392 8.87e-17 83.2
Msa0676460 AT1G34460.4 26.042 192 117 4 176 366 225 392 8.87e-17 83.2
Msa0676460 AT1G34460.7 26.425 193 118 4 176 366 225 395 1.19e-16 82.8
Msa0676460 AT1G34460.6 26.425 193 118 4 176 366 225 395 1.26e-16 82.8
Msa0676460 AT1G34460.3 26.425 193 118 4 176 366 225 395 1.26e-16 82.8
Msa0676460 AT1G34460.8 26.425 193 118 4 176 366 225 395 1.26e-16 82.8
Msa0676460 AT1G34460.1 26.425 193 118 4 176 366 225 395 1.26e-16 82.8
Msa0676460 AT1G34460.9 26.425 193 118 4 176 366 211 381 1.35e-16 82.4
Msa0676460 AT1G34460.5 26.425 193 118 4 176 366 225 395 1.35e-16 82.8

Find 122 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAGAAATGTTACCTTTCT+TGG 0.133114 4_4:+27169881 None:intergenic
ATCATAAATCATTACAAATT+AGG 0.165505 4_4:+27167657 None:intergenic
TCATAAATCATTACAAATTA+GGG 0.211389 4_4:+27167658 None:intergenic
CTTAAATCCAACTGAAATTC+AGG 0.218558 4_4:-27170472 Msa0676460:intron
TTAGATCATCAGAAGATTTC+AGG 0.248087 4_4:-27170193 Msa0676460:CDS
TTCTTGCGGATGGCGGTTAA+AGG 0.248838 4_4:+27167943 None:intergenic
AACAATGTTTCAAGCAGTTT+TGG 0.255031 4_4:+27167716 None:intergenic
TGCTTCTGATTCTGAGTTCC+TGG 0.256521 4_4:+27170612 None:intergenic
AGGTAACATTTCTGAACTTT+TGG 0.265548 4_4:-27169874 Msa0676460:CDS
TAGAGACAGATAAATAATTT+TGG 0.273093 4_4:-27171616 Msa0676460:five_prime_UTR
CTTAAACTTCCTTCCTTCTA+TGG 0.274701 4_4:-27168217 Msa0676460:CDS
TTTCAGGTGCTTAGATGATT+TGG 0.298761 4_4:-27170177 Msa0676460:CDS
ATATACATTTAGTGACCTTA+TGG 0.323409 4_4:-27167533 Msa0676460:three_prime_UTR
TCCAAGCATGCGTGCGATAC+TGG 0.334324 4_4:-27169486 Msa0676460:CDS
TGTACTGTTTCCATGAAGTT+AGG 0.339878 4_4:+27169521 None:intergenic
TGGTTGGAACTCATCCTAAA+AGG 0.349846 4_4:+27170143 None:intergenic
TAGATTTGAATCCAACCTTT+GGG 0.353052 4_4:+27167333 None:intergenic
CAAATCTGATGCTTTGTAAG+AGG 0.356045 4_4:+27168020 None:intergenic
CCTGGTGCTACCTCCTTCAT+TGG 0.361989 4_4:+27170630 None:intergenic
ATCTGAAATCAAGACATTCT+AGG 0.364711 4_4:+27167461 None:intergenic
GAAACACCTGAGGAAAGTTT+TGG 0.367596 4_4:+27168536 None:intergenic
GCGTCTATGTCAGCGACATC+TGG 0.374347 4_4:+27169837 None:intergenic
TCACTGTATATCTCATTGAT+TGG 0.374427 4_4:-27169136 Msa0676460:CDS
CAAAGGTTGGATTCAAATCT+AGG 0.379811 4_4:-27167331 Msa0676460:three_prime_UTR
TAGCATTGAGTTGGAGTACT+TGG 0.388611 4_4:-27168280 Msa0676460:CDS
CTAGATTTGAATCCAACCTT+TGG 0.391094 4_4:+27167332 None:intergenic
TGAATCCAACCTTTGGGGTC+AGG 0.391190 4_4:+27167339 None:intergenic
GAAGATGCAGCGACCATAGA+AGG 0.394096 4_4:+27168204 None:intergenic
GAACTAACACTGATGAACTA+TGG 0.399485 4_4:-27168243 Msa0676460:CDS
TGATTGACAGGTAGTAAAAC+TGG 0.408227 4_4:-27168607 Msa0676460:intron
AAGGCCTTATCCTAACTTCA+TGG 0.409072 4_4:-27169531 Msa0676460:CDS
GAACTTTGGATACTAAATCT+TGG 0.419346 4_4:+27170771 None:intergenic
TTATCTTCCTTCAATGGAGC+TGG 0.421163 4_4:-27171510 Msa0676460:five_prime_UTR
TATACATTTAGTGACCTTAT+GGG 0.431397 4_4:-27167532 Msa0676460:three_prime_UTR
CAAATTGTTGCAGCCAAGAA+AGG 0.441666 4_4:-27169894 Msa0676460:CDS
CCTTTGAGTTCTCAGAAGAA+AGG 0.448840 4_4:-27170065 Msa0676460:intron
ACCAGTATCGCACGCATGCT+TGG 0.449229 4_4:+27169485 None:intergenic
GGAACCTCATTTGAAACATC+AGG 0.452258 4_4:+27170281 None:intergenic
GCTGTGGCTTTAAGTACATC+TGG 0.460174 4_4:-27170663 Msa0676460:CDS
AACTTCACCAGCTCCATTGA+AGG 0.460264 4_4:+27171503 None:intergenic
TCTTGCGGATGGCGGTTAAA+GGG 0.462277 4_4:+27167944 None:intergenic
CTCAAAACCGGTGAGTTCAA+TGG 0.463382 4_4:-27170225 Msa0676460:CDS
GTTTCCATGAAGTTAGGATA+AGG 0.469825 4_4:+27169527 None:intergenic
TTTGAAACATCAGGTTGAGC+AGG 0.471682 4_4:+27170290 None:intergenic
TATTATATTGGTAGTGGAAG+CGG 0.471935 4_4:-27171581 Msa0676460:five_prime_UTR
AAACATTGTTCTGAATATGA+TGG 0.489279 4_4:-27167703 Msa0676460:exon
AAGAGTGTCACTCTGAAAGC+TGG 0.489355 4_4:-27170717 Msa0676460:CDS
TAGAATGTCTTGATTTCAGA+TGG 0.493368 4_4:-27167459 Msa0676460:three_prime_UTR
CGCATTTCCATTGAACTCAC+CGG 0.493862 4_4:+27170218 None:intergenic
ATGTCTGCCAGGCTAAGAAA+AGG 0.496711 4_4:-27170325 Msa0676460:intron
AAGAGAGAGACTTCAGCTAC+TGG 0.497350 4_4:-27169090 Msa0676460:CDS
GAGGCATACTGTTCAAGAGT+TGG 0.504331 4_4:+27168039 None:intergenic
TCAACCTGATGTTTCAAATG+AGG 0.507462 4_4:-27170285 Msa0676460:CDS
TGCGTGCGATACTGGTTGAT+TGG 0.508489 4_4:-27169478 Msa0676460:CDS
GAGCAGATATTCGAGATGTC+TGG 0.508698 4_4:+27170090 None:intergenic
ATAAGCAAGAACCTCCCATA+AGG 0.511095 4_4:+27167518 None:intergenic
TATGCAACCTGAATTTCAGT+TGG 0.513953 4_4:+27170465 None:intergenic
AATTCATGTTCAGGTTTCTG+AGG 0.514222 4_4:-27169189 Msa0676460:intron
GGTGCTACCTCCTTCATTGG+TGG 0.514272 4_4:+27170633 None:intergenic
GGAGTACTTGGCAAATTACC+TGG 0.519674 4_4:-27168268 Msa0676460:CDS
ATTGTGGCGAAAATACAAAC+AGG 0.527010 4_4:-27170500 Msa0676460:CDS
AAGTTTGCAGCATAGATCTC+AGG 0.530359 4_4:-27171485 Msa0676460:five_prime_UTR
GCATTCCTGACCCCAAAGGT+TGG 0.535284 4_4:-27167344 Msa0676460:three_prime_UTR
AGCAAATAGTTGATATGAAG+AGG 0.537833 4_4:+27168566 None:intergenic
TGGACAGTTACCACCAATGA+AGG 0.540275 4_4:-27170643 Msa0676460:CDS
CGAGCACGAGTCAATCGACT+TGG 0.540414 4_4:+27170687 None:intergenic
GTTCATAGCTGACTCAAAAC+CGG 0.542331 4_4:-27170237 Msa0676460:CDS
TCATCAGTGTTAGTTCAGCC+AGG 0.544691 4_4:+27168250 None:intergenic
TTGTGTGTACTTCTTGCGGA+TGG 0.546451 4_4:+27167933 None:intergenic
GCAGAGGCCTAGCATTGAGT+TGG 0.548505 4_4:-27168289 Msa0676460:intron
CCAATGAAGGAGGTAGCACC+AGG 0.548598 4_4:-27170630 Msa0676460:CDS
CTACTACCAAAACTTTCCTC+AGG 0.552988 4_4:-27168542 Msa0676460:intron
ATTCATGTTCAGGTTTCTGA+GGG 0.554200 4_4:-27169188 Msa0676460:intron
ATTGTTTGTGCCACACTGGT+TGG 0.556087 4_4:+27170127 None:intergenic
CTTCCGTGTTTCTTGCACGA+TGG 0.556981 4_4:-27168185 Msa0676460:CDS
TAGATCAGTCAAGCCACCCA+TGG 0.558247 4_4:-27168158 Msa0676460:CDS
ATCAAAATAACCTTAAATTG+TGG 0.561404 4_4:-27171745 Msa0676460:five_prime_UTR
GGTGGTAGCTCAGCAGCTGA+TGG 0.562864 4_4:+27170260 None:intergenic
AAGTACTCCAACTCAATGCT+AGG 0.564248 4_4:+27168282 None:intergenic
GCTGGCATTCCTGACCCCAA+AGG 0.566725 4_4:-27167348 Msa0676460:three_prime_UTR
TTGGGGTCAGGAATGCCAGC+AGG 0.566814 4_4:+27167351 None:intergenic
CATATATATCAGCAGCATAG+TGG 0.569484 4_4:+27169787 None:intergenic
TGTCTTGTGTGTACTTCTTG+CGG 0.570627 4_4:+27167929 None:intergenic
ACTGGTTGATTGGCTTGTTG+AGG 0.576476 4_4:-27169468 Msa0676460:intron
AGCGGCACAAGCTTCCTACA+AGG 0.577919 4_4:-27168404 Msa0676460:intron
ATTGACTCGTGCTCGAGCTG+TGG 0.579601 4_4:-27170679 Msa0676460:CDS
GGATAACACATACACAAAAG+AGG 0.584093 4_4:-27168904 Msa0676460:CDS
AGAGAGAGACTTCAGCTACT+GGG 0.585840 4_4:-27169089 Msa0676460:CDS
CAAGATGTCACTAACAATTG+TGG 0.589172 4_4:-27170516 Msa0676460:CDS
CCTTTCTTCTGAGAACTCAA+AGG 0.595834 4_4:+27170065 None:intergenic
GCATAGTGGCTGCATAGTTG+AGG 0.597253 4_4:+27169801 None:intergenic
TTGTAGGAGGTTTCTTCGAG+CGG 0.597311 4_4:-27168422 Msa0676460:intron
ATGGACAAATGATGAATGCA+AGG 0.598852 4_4:-27167684 Msa0676460:three_prime_UTR
TGACCACTTGCGTGTTGCTG+AGG 0.600917 4_4:-27169766 Msa0676460:intron
TAAAGACTTCTGCTTCATCA+CGG 0.601348 4_4:-27168925 Msa0676460:CDS
GATTATTGTTTGTGCCACAC+TGG 0.602071 4_4:+27170123 None:intergenic
TGTGTACTTCTTGCGGATGG+CGG 0.608917 4_4:+27167936 None:intergenic
ATGCAGCGACCATAGAAGGA+AGG 0.622018 4_4:+27168208 None:intergenic
AGATCAGTCAAGCCACCCAT+GGG 0.623354 4_4:-27168157 Msa0676460:intron
ACATTTAGTGACCTTATGGG+AGG 0.623854 4_4:-27167529 Msa0676460:three_prime_UTR
AGCAGAAGTCTTTAATACGA+GGG 0.626136 4_4:+27168934 None:intergenic
CAAGAAGTACACACAAGACA+AGG 0.627309 4_4:-27167926 Msa0676460:intron
AGACATCTCGAATATCTGCT+CGG 0.628981 4_4:-27170088 Msa0676460:CDS
AGATTTGAATCCAACCTTTG+GGG 0.631950 4_4:+27167334 None:intergenic
CGGTGAGTTCAATGGAAATG+CGG 0.632380 4_4:-27170217 Msa0676460:CDS
TGTCCATCGTGCAAGAAACA+CGG 0.632857 4_4:+27168182 None:intergenic
GTCAGATGCAACTTAATCAG+AGG 0.640910 4_4:+27167307 None:intergenic
CCAGGCTAAGAAAAGGAAGG+TGG 0.645605 4_4:-27170318 Msa0676460:intron
AAACCTCAGCAACACGCAAG+TGG 0.651996 4_4:+27169763 None:intergenic
GCAGAAGTCTTTAATACGAG+GGG 0.653858 4_4:+27168935 None:intergenic
CATAAATCATTACAAATTAG+GGG 0.653878 4_4:+27167659 None:intergenic
CTGCCAGGCTAAGAAAAGGA+AGG 0.656987 4_4:-27170321 Msa0676460:intron
AAGCAGAAGTCTTTAATACG+AGG 0.678996 4_4:+27168933 None:intergenic
GAAAAGAACTAACCCATGGG+TGG 0.679908 4_4:+27168145 None:intergenic
TAACACATACACAAAAGAGG+AGG 0.680647 4_4:-27168901 Msa0676460:intron
AGGATGAGTTCCAACCAGTG+TGG 0.684018 4_4:-27170137 Msa0676460:CDS
AGGAATGCCAGCAGGATACG+CGG 0.687594 4_4:+27167359 None:intergenic
GATGTGTACTGTGTCACAGT+AGG 0.688059 4_4:-27167634 Msa0676460:three_prime_UTR
ACAGTTACCACCAATGAAGG+AGG 0.688615 4_4:-27170640 Msa0676460:CDS
TTTGAGTCAGCTATGAACGG+TGG 0.693132 4_4:+27170242 None:intergenic
TGGACAAATGATGAATGCAA+GGG 0.702925 4_4:-27167683 Msa0676460:three_prime_UTR
AATCAATGAGATATACAGTG+AGG 0.724831 4_4:+27169138 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAAAATTAAATATAAAA+GGG + chr4_4:27168103-27168122 None:intergenic 0.0%
!! AATTAAAAATTAAATATAAA+AGG + chr4_4:27168104-27168123 None:intergenic 0.0%
!!! TAGTATTTCTTTTATTATAT+TGG - chr4_4:27167418-27167437 Msa0676460:three_prime_UTR 10.0%
!!! TTTGATACATATTTTAAAAT+AGG - chr4_4:27167684-27167703 Msa0676460:three_prime_UTR 10.0%
!!! TTGTTAAATTTTATTGTTAT+TGG - chr4_4:27168128-27168147 Msa0676460:intron 10.0%
!!! TTTTTTATTAACTTCATTCT+GGG - chr4_4:27167573-27167592 Msa0676460:three_prime_UTR 15.0%
!!! ATATTTTAAAATAGGAAACT+TGG - chr4_4:27167692-27167711 Msa0676460:three_prime_UTR 15.0%
!!! TGTCTTATTGTTATTATTTT+TGG - chr4_4:27167815-27167834 Msa0676460:intron 15.0%
!! TCATAAATCATTACAAATTA+GGG + chr4_4:27171356-27171375 None:intergenic 15.0%
!! ATCATAAATCATTACAAATT+AGG + chr4_4:27171357-27171376 None:intergenic 15.0%
!! ATCAAAATAACCTTAAATTG+TGG - chr4_4:27167266-27167285 Msa0676460:three_prime_UTR 20.0%
!!! TAGAGACAGATAAATAATTT+TGG - chr4_4:27167395-27167414 Msa0676460:three_prime_UTR 20.0%
!!! TTCTTTTATTATATTGGTAG+TGG - chr4_4:27167424-27167443 Msa0676460:three_prime_UTR 20.0%
!!! GTTTTTTATTAACTTCATTC+TGG - chr4_4:27167572-27167591 Msa0676460:three_prime_UTR 20.0%
!! TTTAAACACAGAAAATGTAA+AGG + chr4_4:27168156-27168175 None:intergenic 20.0%
!!! ATAAATGACTTTTAGTTAGT+TGG - chr4_4:27169050-27169069 Msa0676460:intron 20.0%
!! TTTATAAAATGCATGCTAAT+CGG - chr4_4:27169335-27169354 Msa0676460:intron 20.0%
!! AACTAATATAATACACATCT+AGG + chr4_4:27169764-27169783 None:intergenic 20.0%
!! TAGTCATTAGATTTCATTTA+GGG - chr4_4:27170284-27170303 Msa0676460:CDS 20.0%
!! TTTCTTTGAGTAATTTCATA+TGG + chr4_4:27170907-27170926 None:intergenic 20.0%
!! AAAAACAGAAGTAGAAATTA+AGG + chr4_4:27170936-27170955 None:intergenic 20.0%
!! GTTATGTTACAAAGTAAATA+GGG + chr4_4:27171199-27171218 None:intergenic 20.0%
!! AGTTATGTTACAAAGTAAAT+AGG + chr4_4:27171200-27171219 None:intergenic 20.0%
!! CATAAATCATTACAAATTAG+GGG + chr4_4:27171355-27171374 None:intergenic 20.0%
!! TTTTCATTAGCCACAATTTA+AGG + chr4_4:27167279-27167298 None:intergenic 25.0%
! TAATGAAAAAAGTTAGGGTA+AGG - chr4_4:27167290-27167309 Msa0676460:three_prime_UTR 25.0%
! AATGAAAAAAGTTAGGGTAA+GGG - chr4_4:27167291-27167310 Msa0676460:three_prime_UTR 25.0%
!!! TTATTTTGCTAATTTAGTGC+AGG + chr4_4:27167351-27167370 None:intergenic 25.0%
! TGAGCTTAAAAGAGAAAAAA+AGG - chr4_4:27167635-27167654 Msa0676460:three_prime_UTR 25.0%
! GAGCTTAAAAGAGAAAAAAA+GGG - chr4_4:27167636-27167655 Msa0676460:three_prime_UTR 25.0%
! TCATTTCAGCAACATAAAAA+TGG + chr4_4:27167776-27167795 None:intergenic 25.0%
! AATAAGACAAACAACATACA+TGG + chr4_4:27167804-27167823 None:intergenic 25.0%
!! AATGTTTGGATGTCAAATTT+TGG + chr4_4:27167856-27167875 None:intergenic 25.0%
!!! ATCCAAACATTTTTGTTTCA+TGG - chr4_4:27167865-27167884 Msa0676460:intron 25.0%
! AACCATGAAACAAAAATGTT+TGG + chr4_4:27167870-27167889 None:intergenic 25.0%
!!! CATTTTTGTTTCATGGTTTA+TGG - chr4_4:27167872-27167891 Msa0676460:intron 25.0%
! TAAAATTGATGAGTGCATTA+AGG - chr4_4:27167989-27168008 Msa0676460:CDS 25.0%
! TGCAGATAGTAACATAAAAA+TGG - chr4_4:27168077-27168096 Msa0676460:intron 25.0%
! CCAAAAATTCAAAAGAACTT+TGG + chr4_4:27168257-27168276 None:intergenic 25.0%
!! CCAAAGTTCTTTTGAATTTT+TGG - chr4_4:27168254-27168273 Msa0676460:CDS 25.0%
! TGCATATATCCAATATCAAA+TGG - chr4_4:27168563-27168582 Msa0676460:CDS 25.0%
! AAACAAGAACCATTTGATAT+TGG + chr4_4:27168575-27168594 None:intergenic 25.0%
! TTTGTCTTGAAATGTATTGA+AGG - chr4_4:27168594-27168613 Msa0676460:CDS 25.0%
! CAATGTACTACATAAATAGA+GGG + chr4_4:27168975-27168994 None:intergenic 25.0%
! ACAATGTACTACATAAATAG+AGG + chr4_4:27168976-27168995 None:intergenic 25.0%
!! TCTTGAACAGATTTCTTTTA+TGG + chr4_4:27169020-27169039 None:intergenic 25.0%
!!! AACTTAGTTGTGGTTATTTT+TGG - chr4_4:27169083-27169102 Msa0676460:CDS 25.0%
!! CTCTCTTTCAATACAATTTT+TGG + chr4_4:27169908-27169927 None:intergenic 25.0%
! ATGAGCATTACTAAACATAA+TGG + chr4_4:27170010-27170029 None:intergenic 25.0%
!! TGATTAATACTAAAGTACCA+AGG - chr4_4:27170173-27170192 Msa0676460:CDS 25.0%
! AAATGAAATCTAATGACTAG+AGG + chr4_4:27170283-27170302 None:intergenic 25.0%
! CTAGTCATTAGATTTCATTT+AGG - chr4_4:27170283-27170302 Msa0676460:CDS 25.0%
!! TTTCATTTAGGGTCTTAAAA+AGG - chr4_4:27170295-27170314 Msa0676460:CDS 25.0%
!! TTTTTGTAAAGACTACTGAA+CGG + chr4_4:27170519-27170538 None:intergenic 25.0%
! CAATTATCTTAGTACATTCT+TGG - chr4_4:27170564-27170583 Msa0676460:CDS 25.0%
! TTTGAGTAATTTCATATGGA+AGG + chr4_4:27170903-27170922 None:intergenic 25.0%
!! AAACATTGTTCTGAATATGA+TGG - chr4_4:27171308-27171327 Msa0676460:intron 25.0%
! ATATACATTTAGTGACCTTA+TGG - chr4_4:27171478-27171497 Msa0676460:five_prime_UTR 25.0%
! TATACATTTAGTGACCTTAT+GGG - chr4_4:27171479-27171498 Msa0676460:five_prime_UTR 25.0%
TGTGGCTAATGAAAAAAGTT+AGG - chr4_4:27167284-27167303 Msa0676460:three_prime_UTR 30.0%
GTGGCTAATGAAAAAAGTTA+GGG - chr4_4:27167285-27167304 Msa0676460:three_prime_UTR 30.0%
CGTGACTAATGAAAAAAGTT+AGG - chr4_4:27167371-27167390 Msa0676460:three_prime_UTR 30.0%
!! TATTATATTGGTAGTGGAAG+CGG - chr4_4:27167430-27167449 Msa0676460:three_prime_UTR 30.0%
! GACTTTTTATCTTCCTTCAA+TGG - chr4_4:27167495-27167514 Msa0676460:three_prime_UTR 30.0%
!!! AGGTCATTTTTCATACACAA+AGG - chr4_4:27167546-27167565 Msa0676460:three_prime_UTR 30.0%
TTTATTAACTTCATTCTGGG+TGG - chr4_4:27167576-27167595 Msa0676460:three_prime_UTR 30.0%
! TTTTCTGGGTTATTCTGATT+TGG - chr4_4:27167599-27167618 Msa0676460:three_prime_UTR 30.0%
TTTCTGGGTTATTCTGATTT+GGG - chr4_4:27167600-27167619 Msa0676460:three_prime_UTR 30.0%
! GAAACTTGGACAACATTTTA+AGG - chr4_4:27167706-27167725 Msa0676460:exon 30.0%
TTCTTTGATGTTACTGTAGT+TGG - chr4_4:27168021-27168040 Msa0676460:CDS 30.0%
TCTTTGATGTTACTGTAGTT+GGG - chr4_4:27168022-27168041 Msa0676460:CDS 30.0%
GAACTTTGGATACTAAATCT+TGG + chr4_4:27168243-27168262 None:intergenic 30.0%
!!! TCTTTTAGAATTGGCTCTTA+GGG + chr4_4:27168427-27168446 None:intergenic 30.0%
!!! TGAAACTGCTCTTTTAGAAT+TGG + chr4_4:27168436-27168455 None:intergenic 30.0%
ATATCTTCCTCGTAAAAAGA+GGG - chr4_4:27168464-27168483 Msa0676460:intron 30.0%
CTTAAATCCAACTGAAATTC+AGG - chr4_4:27168539-27168558 Msa0676460:intron 30.0%
AAGGATTCATATCTCAATAG+TGG - chr4_4:27168613-27168632 Msa0676460:intron 30.0%
!! TTCATATCTCAATAGTGGAT+AGG - chr4_4:27168618-27168637 Msa0676460:intron 30.0%
TTAGATCATCAGAAGATTTC+AGG - chr4_4:27168818-27168837 Msa0676460:intron 30.0%
TTCAGAAATGTTACCTTTCT+TGG + chr4_4:27169133-27169152 None:intergenic 30.0%
! AGGTAACATTTCTGAACTTT+TGG - chr4_4:27169137-27169156 Msa0676460:CDS 30.0%
TATGTGCAGTAAAGCAATAT+TGG + chr4_4:27169306-27169325 None:intergenic 30.0%
GACAAACAACTTAGCATAAA+AGG + chr4_4:27169433-27169452 None:intergenic 30.0%
TCATATTGTTCAGCTAAACT+TGG + chr4_4:27169621-27169640 None:intergenic 30.0%
TGAACATGAATTCAACACAT+GGG + chr4_4:27169814-27169833 None:intergenic 30.0%
AATCAATGAGATATACAGTG+AGG + chr4_4:27169876-27169895 None:intergenic 30.0%
TCACTGTATATCTCATTGAT+TGG - chr4_4:27169875-27169894 Msa0676460:CDS 30.0%
! TAAACATAATGGAACACAAG+AGG + chr4_4:27169999-27170018 None:intergenic 30.0%
CTGAAAGTAGCAATTTCATA+TGG - chr4_4:27170212-27170231 Msa0676460:CDS 30.0%
!!! TTTGCTGTTTTGTAAGTATG+TGG - chr4_4:27170343-27170362 Msa0676460:intron 30.0%
!! TACTCAATGTATTGATTGAC+AGG - chr4_4:27170392-27170411 Msa0676460:intron 30.0%
! AGCAAATAGTTGATATGAAG+AGG + chr4_4:27170448-27170467 None:intergenic 30.0%
TGTACTAAGATAATTGCAAG+AGG + chr4_4:27170560-27170579 None:intergenic 30.0%
!!! TAGTACATTCTTGGTTTTGT+AGG - chr4_4:27170573-27170592 Msa0676460:CDS 30.0%
AGTAATGCTCAATACAAATC+TGG + chr4_4:27170676-27170695 None:intergenic 30.0%
!! CTCTGCATGTTTTATTCAAT+TGG + chr4_4:27170708-27170727 None:intergenic 30.0%
CAATTGAATAAAACATGCAG+AGG - chr4_4:27170706-27170725 Msa0676460:CDS 30.0%
AAAGAAAAGAACTAACCCAT+GGG + chr4_4:27170872-27170891 None:intergenic 30.0%
! AACAATGTTTCAAGCAGTTT+TGG + chr4_4:27171298-27171317 None:intergenic 30.0%
! ATCTGAAATCAAGACATTCT+AGG + chr4_4:27171553-27171572 None:intergenic 30.0%
TAGAATGTCTTGATTTCAGA+TGG - chr4_4:27171552-27171571 Msa0676460:five_prime_UTR 30.0%
TAGATTTGAATCCAACCTTT+GGG + chr4_4:27171681-27171700 None:intergenic 30.0%
ACTTCGAGCAAAATGAAAAA+AGG - chr4_4:27171728-27171747 Msa0676460:five_prime_UTR 30.0%
CTTCGAGCAAAATGAAAAAA+GGG - chr4_4:27171729-27171748 Msa0676460:five_prime_UTR 30.0%
! TCTGTTGTTCTAAGTGCATT+TGG - chr4_4:27167920-27167939 Msa0676460:intron 35.0%
TCTAAGTGCATTTGGAAACA+TGG - chr4_4:27167928-27167947 Msa0676460:CDS 35.0%
TGTGATTGCTTCAAACATCA+AGG - chr4_4:27167959-27167978 Msa0676460:CDS 35.0%
! TTTTGGATCTTGTAGAGATG+AGG - chr4_4:27168271-27168290 Msa0676460:CDS 35.0%
!!! CTTTTAGAATTGGCTCTTAG+GGG + chr4_4:27168426-27168445 None:intergenic 35.0%
!!! CTCTTTTAGAATTGGCTCTT+AGG + chr4_4:27168428-27168447 None:intergenic 35.0%
CATATCTTCCTCGTAAAAAG+AGG - chr4_4:27168463-27168482 Msa0676460:intron 35.0%
CAAGATGTCACTAACAATTG+TGG - chr4_4:27168495-27168514 Msa0676460:intron 35.0%
ATTGTGGCGAAAATACAAAC+AGG - chr4_4:27168511-27168530 Msa0676460:intron 35.0%
TATGCAACCTGAATTTCAGT+TGG + chr4_4:27168549-27168568 None:intergenic 35.0%
TCAACCTGATGTTTCAAATG+AGG - chr4_4:27168726-27168745 Msa0676460:intron 35.0%
! TTTCAGGTGCTTAGATGATT+TGG - chr4_4:27168834-27168853 Msa0676460:intron 35.0%
!!! ACTTTTAGTTAGTTGGTGAC+TGG - chr4_4:27169057-27169076 Msa0676460:intron 35.0%
CATATATATCAGCAGCATAG+TGG + chr4_4:27169227-27169246 None:intergenic 35.0%
!!! CATTTTTTCAGCTGTCAAGA+AGG - chr4_4:27169461-27169480 Msa0676460:intron 35.0%
GTTTCCATGAAGTTAGGATA+AGG + chr4_4:27169487-27169506 None:intergenic 35.0%
TGTACTGTTTCCATGAAGTT+AGG + chr4_4:27169493-27169512 None:intergenic 35.0%
CTGAACATGAATTCAACACA+TGG + chr4_4:27169815-27169834 None:intergenic 35.0%
CATGTGTTGAATTCATGTTC+AGG - chr4_4:27169813-27169832 Msa0676460:CDS 35.0%
! AATTCATGTTCAGGTTTCTG+AGG - chr4_4:27169822-27169841 Msa0676460:CDS 35.0%
! ATTCATGTTCAGGTTTCTGA+GGG - chr4_4:27169823-27169842 Msa0676460:CDS 35.0%
CACGTAAGTTCTCAACTTAA+GGG - chr4_4:27169966-27169985 Msa0676460:intron 35.0%
AGCAGAAGTCTTTAATACGA+GGG + chr4_4:27170080-27170099 None:intergenic 35.0%
AAGCAGAAGTCTTTAATACG+AGG + chr4_4:27170081-27170100 None:intergenic 35.0%
TAAAGACTTCTGCTTCATCA+CGG - chr4_4:27170086-27170105 Msa0676460:CDS 35.0%
GGATAACACATACACAAAAG+AGG - chr4_4:27170107-27170126 Msa0676460:CDS 35.0%
TAACACATACACAAAAGAGG+AGG - chr4_4:27170110-27170129 Msa0676460:CDS 35.0%
!! GTTTTGATGTATGCTTTCCT+TGG + chr4_4:27170193-27170212 None:intergenic 35.0%
TGATTGACAGGTAGTAAAAC+TGG - chr4_4:27170404-27170423 Msa0676460:intron 35.0%
!!! TACATTCTTGGTTTTGTAGG+AGG - chr4_4:27170576-27170595 Msa0676460:CDS 35.0%
! GATCGATCTTTTTACCTTGT+AGG + chr4_4:27170624-27170643 None:intergenic 35.0%
ACAAGGTAAAAAGATCGATC+TGG - chr4_4:27170624-27170643 Msa0676460:CDS 35.0%
CAAGGTAAAAAGATCGATCT+GGG - chr4_4:27170625-27170644 Msa0676460:CDS 35.0%
GAACTAACACTGATGAACTA+TGG - chr4_4:27170768-27170787 Msa0676460:five_prime_UTR 35.0%
CTTAAACTTCCTTCCTTCTA+TGG - chr4_4:27170794-27170813 Msa0676460:intron 35.0%
GAAAGAAAAGAACTAACCCA+TGG + chr4_4:27170873-27170892 None:intergenic 35.0%
CAAATCTGATGCTTTGTAAG+AGG + chr4_4:27170994-27171013 None:intergenic 35.0%
ATGGACAAATGATGAATGCA+AGG - chr4_4:27171327-27171346 Msa0676460:intron 35.0%
TGGACAAATGATGAATGCAA+GGG - chr4_4:27171328-27171347 Msa0676460:intron 35.0%
AGATTTGAATCCAACCTTTG+GGG + chr4_4:27171680-27171699 None:intergenic 35.0%
CTAGATTTGAATCCAACCTT+TGG + chr4_4:27171682-27171701 None:intergenic 35.0%
CAAAGGTTGGATTCAAATCT+AGG - chr4_4:27171680-27171699 Msa0676460:five_prime_UTR 35.0%
CAAAATGAAAAAAGGGATCG+AGG - chr4_4:27171736-27171755 Msa0676460:five_prime_UTR 35.0%
TTATCTTCCTTCAATGGAGC+TGG - chr4_4:27167501-27167520 Msa0676460:three_prime_UTR 40.0%
AAGTTTGCAGCATAGATCTC+AGG - chr4_4:27167526-27167545 Msa0676460:three_prime_UTR 40.0%
! TTCATTCTGGGTGGTTTTCT+GGG - chr4_4:27167585-27167604 Msa0676460:three_prime_UTR 40.0%
! AGAATTGCCCTCTTTTTACG+AGG + chr4_4:27168474-27168493 None:intergenic 40.0%
!!! CTGTTACTTTTATGTCTGCC+AGG - chr4_4:27168675-27168694 Msa0676460:intron 40.0%
!! TTTGAAACATCAGGTTGAGC+AGG + chr4_4:27168724-27168743 None:intergenic 40.0%
! GGAACCTCATTTGAAACATC+AGG + chr4_4:27168733-27168752 None:intergenic 40.0%
!!! GGTTTTGAGTCAGCTATGAA+CGG + chr4_4:27168775-27168794 None:intergenic 40.0%
! GTTCATAGCTGACTCAAAAC+CGG - chr4_4:27168774-27168793 Msa0676460:intron 40.0%
! TGGAAGACAATGCACCTTTT+AGG - chr4_4:27168854-27168873 Msa0676460:intron 40.0%
TGGTTGGAACTCATCCTAAA+AGG + chr4_4:27168871-27168890 None:intergenic 40.0%
GATTATTGTTTGTGCCACAC+TGG + chr4_4:27168891-27168910 None:intergenic 40.0%
AGACATCTCGAATATCTGCT+CGG - chr4_4:27168923-27168942 Msa0676460:CDS 40.0%
! CCTTTCTTCTGAGAACTCAA+AGG + chr4_4:27168949-27168968 None:intergenic 40.0%
! CCTTTGAGTTCTCAGAAGAA+AGG - chr4_4:27168946-27168965 Msa0676460:CDS 40.0%
TGACTGGTGTAACTTAGTTG+TGG - chr4_4:27169073-27169092 Msa0676460:CDS 40.0%
CAAATTGTTGCAGCCAAGAA+AGG - chr4_4:27169117-27169136 Msa0676460:CDS 40.0%
TGGTAGAGACAATTGTGACA+GGG + chr4_4:27169286-27169305 None:intergenic 40.0%
TTGGTAGAGACAATTGTGAC+AGG + chr4_4:27169287-27169306 None:intergenic 40.0%
! AAGGCCTTATCCTAACTTCA+TGG - chr4_4:27169480-27169499 Msa0676460:CDS 40.0%
!! CCTTAAGTTGAGAACTTACG+TGG + chr4_4:27169968-27169987 None:intergenic 40.0%
CCACGTAAGTTCTCAACTTA+AGG - chr4_4:27169965-27169984 Msa0676460:intron 40.0%
GTTCTCAACTTAAGGGAAGT+TGG - chr4_4:27169973-27169992 Msa0676460:intron 40.0%
GCAGAAGTCTTTAATACGAG+GGG + chr4_4:27170079-27170098 None:intergenic 40.0%
GAGATTCTATGTTCTCGTGT+TGG + chr4_4:27170243-27170262 None:intergenic 40.0%
!! CTGAGGAAAGTTTTGGTAGT+AGG + chr4_4:27170471-27170490 None:intergenic 40.0%
CTACTACCAAAACTTTCCTC+AGG - chr4_4:27170469-27170488 Msa0676460:intron 40.0%
! GAAACACCTGAGGAAAGTTT+TGG + chr4_4:27170478-27170497 None:intergenic 40.0%
AAGTTGACAAGAAACACCTG+AGG + chr4_4:27170488-27170507 None:intergenic 40.0%
AAGTACTCCAACTCAATGCT+AGG + chr4_4:27170732-27170751 None:intergenic 40.0%
!! TAGCATTGAGTTGGAGTACT+TGG - chr4_4:27170731-27170750 Msa0676460:exon 40.0%
TGTCTTGTGTGTACTTCTTG+CGG + chr4_4:27171085-27171104 None:intergenic 40.0%
! CAAGAAGTACACACAAGACA+AGG - chr4_4:27171085-27171104 Msa0676460:intron 40.0%
ACAAGGTATGTCAGAAAGAG+AGG - chr4_4:27171102-27171121 Msa0676460:intron 40.0%
ACATTTAGTGACCTTATGGG+AGG - chr4_4:27171482-27171501 Msa0676460:five_prime_UTR 40.0%
ATAAGCAAGAACCTCCCATA+AGG + chr4_4:27171496-27171515 None:intergenic 40.0%
GTCAGATGCAACTTAATCAG+AGG + chr4_4:27171707-27171726 None:intergenic 40.0%
AACTTCACCAGCTCCATTGA+AGG + chr4_4:27167511-27167530 None:intergenic 45.0%
! CTTCATTCTGGGTGGTTTTC+TGG - chr4_4:27167584-27167603 Msa0676460:three_prime_UTR 45.0%
!! AAGAGTGTCACTCTGAAAGC+TGG - chr4_4:27168294-27168313 Msa0676460:intron 45.0%
!! GCTGTGGCTTTAAGTACATC+TGG - chr4_4:27168348-27168367 Msa0676460:intron 45.0%
TGGACAGTTACCACCAATGA+AGG - chr4_4:27168368-27168387 Msa0676460:intron 45.0%
ACAGTTACCACCAATGAAGG+AGG - chr4_4:27168371-27168390 Msa0676460:intron 45.0%
TGCTTCTGATTCTGAGTTCC+TGG + chr4_4:27168402-27168421 None:intergenic 45.0%
ATGTCTGCCAGGCTAAGAAA+AGG - chr4_4:27168686-27168705 Msa0676460:intron 45.0%
TTTGAGTCAGCTATGAACGG+TGG + chr4_4:27168772-27168791 None:intergenic 45.0%
CTCAAAACCGGTGAGTTCAA+TGG - chr4_4:27168786-27168805 Msa0676460:intron 45.0%
CGCATTTCCATTGAACTCAC+CGG + chr4_4:27168796-27168815 None:intergenic 45.0%
CGGTGAGTTCAATGGAAATG+CGG - chr4_4:27168794-27168813 Msa0676460:intron 45.0%
ATTGTTTGTGCCACACTGGT+TGG + chr4_4:27168887-27168906 None:intergenic 45.0%
GAGCAGATATTCGAGATGTC+TGG + chr4_4:27168924-27168943 None:intergenic 45.0%
!! ACTGGTTGATTGGCTTGTTG+AGG - chr4_4:27169543-27169562 Msa0676460:intron 45.0%
AAGAGAGAGACTTCAGCTAC+TGG - chr4_4:27169921-27169940 Msa0676460:intron 45.0%
AGAGAGAGACTTCAGCTACT+GGG - chr4_4:27169922-27169941 Msa0676460:intron 45.0%
TTGTAGGAGGTTTCTTCGAG+CGG - chr4_4:27170589-27170608 Msa0676460:CDS 45.0%
! GGAGTACTTGGCAAATTACC+TGG - chr4_4:27170743-27170762 Msa0676460:exon 45.0%
TCATCAGTGTTAGTTCAGCC+AGG + chr4_4:27170764-27170783 None:intergenic 45.0%
TGTCCATCGTGCAAGAAACA+CGG + chr4_4:27170832-27170851 None:intergenic 45.0%
GAAAAGAACTAACCCATGGG+TGG + chr4_4:27170869-27170888 None:intergenic 45.0%
GAGGCATACTGTTCAAGAGT+TGG + chr4_4:27170975-27170994 None:intergenic 45.0%
TTGTGTGTACTTCTTGCGGA+TGG + chr4_4:27171081-27171100 None:intergenic 45.0%
GATGTGTACTGTGTCACAGT+AGG - chr4_4:27171377-27171396 Msa0676460:intron 45.0%
! TTTTTAACCGCGTATCCTGC+TGG - chr4_4:27171645-27171664 Msa0676460:five_prime_UTR 45.0%
!!! TTTTTTTTTTTTTTTTTTTG+TGG - chr4_4:27167746-27167765 Msa0676460:CDS 5.0%
CTGCCAGGCTAAGAAAAGGA+AGG - chr4_4:27168690-27168709 Msa0676460:intron 50.0%
! CCACCTTCCTTTTCTTAGCC+TGG + chr4_4:27168696-27168715 None:intergenic 50.0%
CCAGGCTAAGAAAAGGAAGG+TGG - chr4_4:27168693-27168712 Msa0676460:intron 50.0%
AGGATGAGTTCCAACCAGTG+TGG - chr4_4:27168874-27168893 Msa0676460:intron 50.0%
GCATAGTGGCTGCATAGTTG+AGG + chr4_4:27169213-27169232 None:intergenic 50.0%
AAACCTCAGCAACACGCAAG+TGG + chr4_4:27169251-27169270 None:intergenic 50.0%
! TGCGTGCGATACTGGTTGAT+TGG - chr4_4:27169533-27169552 Msa0676460:CDS 50.0%
ATGCAGCGACCATAGAAGGA+AGG + chr4_4:27170806-27170825 None:intergenic 50.0%
GAAGATGCAGCGACCATAGA+AGG + chr4_4:27170810-27170829 None:intergenic 50.0%
CTTCCGTGTTTCTTGCACGA+TGG - chr4_4:27170826-27170845 Msa0676460:intron 50.0%
TAGATCAGTCAAGCCACCCA+TGG - chr4_4:27170853-27170872 Msa0676460:intron 50.0%
AGATCAGTCAAGCCACCCAT+GGG - chr4_4:27170854-27170873 Msa0676460:intron 50.0%
! TCTTGCGGATGGCGGTTAAA+GGG + chr4_4:27171070-27171089 None:intergenic 50.0%
! TTCTTGCGGATGGCGGTTAA+AGG + chr4_4:27171071-27171090 None:intergenic 50.0%
TGTGTACTTCTTGCGGATGG+CGG + chr4_4:27171078-27171097 None:intergenic 50.0%
!! TGAATCCAACCTTTGGGGTC+AGG + chr4_4:27171675-27171694 None:intergenic 50.0%
CGAGCACGAGTCAATCGACT+TGG + chr4_4:27168327-27168346 None:intergenic 55.0%
!! ATTGACTCGTGCTCGAGCTG+TGG - chr4_4:27168332-27168351 Msa0676460:intron 55.0%
! GGTGCTACCTCCTTCATTGG+TGG + chr4_4:27168381-27168400 None:intergenic 55.0%
!! CCTGGTGCTACCTCCTTCAT+TGG + chr4_4:27168384-27168403 None:intergenic 55.0%
CCAATGAAGGAGGTAGCACC+AGG - chr4_4:27168381-27168400 Msa0676460:intron 55.0%
GCGTCTATGTCAGCGACATC+TGG + chr4_4:27169177-27169196 None:intergenic 55.0%
! TGACCACTTGCGTGTTGCTG+AGG - chr4_4:27169245-27169264 Msa0676460:intron 55.0%
TCCAAGCATGCGTGCGATAC+TGG - chr4_4:27169525-27169544 Msa0676460:CDS 55.0%
ACCAGTATCGCACGCATGCT+TGG + chr4_4:27169529-27169548 None:intergenic 55.0%
AGCGGCACAAGCTTCCTACA+AGG - chr4_4:27170607-27170626 Msa0676460:CDS 55.0%
! GCAGAGGCCTAGCATTGAGT+TGG - chr4_4:27170722-27170741 Msa0676460:CDS 55.0%
AGGAATGCCAGCAGGATACG+CGG + chr4_4:27171655-27171674 None:intergenic 55.0%
GCATTCCTGACCCCAAAGGT+TGG - chr4_4:27171667-27171686 Msa0676460:five_prime_UTR 55.0%
GGTGGTAGCTCAGCAGCTGA+TGG + chr4_4:27168754-27168773 None:intergenic 60.0%
TTGGGGTCAGGAATGCCAGC+AGG + chr4_4:27171663-27171682 None:intergenic 60.0%
GCTGGCATTCCTGACCCCAA+AGG - chr4_4:27171663-27171682 Msa0676460:five_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 27167258 27171775 27167258 ID=Msa0676460;Name=Msa0676460
chr4_4 mRNA 27167258 27171775 27167258 ID=Msa0676460-mRNA-1;Parent=Msa0676460;Name=Msa0676460-mRNA-1;_AED=0.11;_eAED=0.11;_QI=368|1|1|1|0.90|0.83|12|454|484
chr4_4 exon 27167258 27167765 27167258 ID=Msa0676460-mRNA-1:exon:7199;Parent=Msa0676460-mRNA-1
chr4_4 exon 27167927 27168064 27167927 ID=Msa0676460-mRNA-1:exon:7198;Parent=Msa0676460-mRNA-1
chr4_4 exon 27168158 27168307 27168158 ID=Msa0676460-mRNA-1:exon:7197;Parent=Msa0676460-mRNA-1
chr4_4 exon 27168405 27168438 27168405 ID=Msa0676460-mRNA-1:exon:7196;Parent=Msa0676460-mRNA-1
chr4_4 exon 27168543 27168619 27168543 ID=Msa0676460-mRNA-1:exon:7195;Parent=Msa0676460-mRNA-1
chr4_4 exon 27168902 27168977 27168902 ID=Msa0676460-mRNA-1:exon:7194;Parent=Msa0676460-mRNA-1
chr4_4 exon 27169065 27169198 27169065 ID=Msa0676460-mRNA-1:exon:7193;Parent=Msa0676460-mRNA-1
chr4_4 exon 27169469 27169561 27169469 ID=Msa0676460-mRNA-1:exon:7192;Parent=Msa0676460-mRNA-1
chr4_4 exon 27169767 27169921 27169767 ID=Msa0676460-mRNA-1:exon:7191;Parent=Msa0676460-mRNA-1
chr4_4 exon 27170066 27170336 27170066 ID=Msa0676460-mRNA-1:exon:7190;Parent=Msa0676460-mRNA-1
chr4_4 exon 27170473 27170803 27170473 ID=Msa0676460-mRNA-1:exon:7189;Parent=Msa0676460-mRNA-1
chr4_4 exon 27171466 27171775 27171466 ID=Msa0676460-mRNA-1:exon:7188;Parent=Msa0676460-mRNA-1
chr4_4 five_prime_UTR 27171466 27171775 27171466 ID=Msa0676460-mRNA-1:five_prime_utr;Parent=Msa0676460-mRNA-1
chr4_4 five_prime_UTR 27170746 27170803 27170746 ID=Msa0676460-mRNA-1:five_prime_utr;Parent=Msa0676460-mRNA-1
chr4_4 CDS 27170473 27170745 27170473 ID=Msa0676460-mRNA-1:cds;Parent=Msa0676460-mRNA-1
chr4_4 CDS 27170066 27170336 27170066 ID=Msa0676460-mRNA-1:cds;Parent=Msa0676460-mRNA-1
chr4_4 CDS 27169767 27169921 27169767 ID=Msa0676460-mRNA-1:cds;Parent=Msa0676460-mRNA-1
chr4_4 CDS 27169469 27169561 27169469 ID=Msa0676460-mRNA-1:cds;Parent=Msa0676460-mRNA-1
chr4_4 CDS 27169065 27169198 27169065 ID=Msa0676460-mRNA-1:cds;Parent=Msa0676460-mRNA-1
chr4_4 CDS 27168902 27168977 27168902 ID=Msa0676460-mRNA-1:cds;Parent=Msa0676460-mRNA-1
chr4_4 CDS 27168543 27168619 27168543 ID=Msa0676460-mRNA-1:cds;Parent=Msa0676460-mRNA-1
chr4_4 CDS 27168405 27168438 27168405 ID=Msa0676460-mRNA-1:cds;Parent=Msa0676460-mRNA-1
chr4_4 CDS 27168158 27168307 27168158 ID=Msa0676460-mRNA-1:cds;Parent=Msa0676460-mRNA-1
chr4_4 CDS 27167927 27168064 27167927 ID=Msa0676460-mRNA-1:cds;Parent=Msa0676460-mRNA-1
chr4_4 CDS 27167712 27167765 27167712 ID=Msa0676460-mRNA-1:cds;Parent=Msa0676460-mRNA-1
chr4_4 three_prime_UTR 27167258 27167711 27167258 ID=Msa0676460-mRNA-1:three_prime_utr;Parent=Msa0676460-mRNA-1
Gene Sequence

>Msa0676460

ATGAGGAAGAGTGTCACTCTGAAAGCTGGAGAAGTTCCAAGTCGATTGACTCGTGCTCGAGCTGTGGCTTTAAGTACATCTGGACAGTTACCACCAATGAAGGAGGTAGCACCAGGAACTCAGAATCAGAAGCAGCCCCTAAGAGCCAATTCTAAAAGAGCAGTTTCAGATGTTACATATCTTCCTCGTAAAAAGAGGGCAATTCTTCAAGATGTCACTAACAATTGTGGCGAAAATACAAACAGGAGTTGCTTAAATCCAACTGAAATTCAGGCTAAGAAAAGGAAGGTGGCTAAGCCTGCTCAACCTGATGTTTCAAATGAGGTTCCATCAGCTGCTGAGCTACCACCGTTCATAGCTGACTCAAAACCGGTGAGTTCAATGGAAATGCGGCTTAGATCATCAGAAGATTTCAGGTGCTTAGATGATTTGGAAGACAATGCACCTTTTAGGATGAGTTCCAACCAGTGTGGCACAAACAATAATCTGCTTCAAAGCCAGACATCTCGAATATCTGCTCGGCCTTTGAGTTCTCAGAAGAAAGCTTCACAAATTGTTGCAGCCAAGAAAGGTAACATTTCTGAACTTTTGGATGTGTCAAAGCATCCAGATGTCGCTGACATAGACGCTGATTTTGAAGATCCTCAACTATGCAGCCACTATGCTGCTGATATATATGACCACTTGCGTGTTGCTGAGCTGTCAAGAAGGCCTTATCCTAACTTCATGGAAACAGTACAGCAAGATATCACTCCAAGCATGCGTGCGATACTGGTTGATTGGCTTGTTGAGGTTTCTGAGGGATACAAATTGCAAGCAAACACTCTTTACCTCACTGTATATCTCATTGATTGGTTTCTCTCCAAAAATTGTATTGAAAGAGAGAGACTTCAGCTACTGGGCATTACTTGCATGCTAATTGCCACAAAATACGAAGAAATTAACGCCCCTCGTATTAAAGACTTCTGCTTCATCACGGATAACACATACACAAAAGAGGAGGTAGTAAAACTGGAATCTCTAGTGCTGAAGTCCTCTTCATATCAACTATTTGCTCCTACTACCAAAACTTTCCTCAGGAGGTTTCTTCGAGCGGCACAAGCTTCCTACAAGAGGCCTAGCATTGAGTTGGAGTACTTGGCAAATTACCTGGCTGAACTAACACTGATGAACTATGGTTTCTTAAACTTCCTTCCTTCTATGGTCGCTGCATCTTCCGTGTTTCTTGCACGATGGACATTAGATCAGTCAAGCCACCCATGGAATCCAACTCTTGAACAGTATGCCTCTTACAAAGCATCAGATTTGAAAGCTACAGTTCTTGCATTACAAGATCTACAGCTGAATAGTAATGATGACTGCCCTTTAACCGCCATCCGCAAGAAGTACACACAAGACAAGCTCAATTGTGTAGCAGCTTTATCTTCACCAAAACTGCTTGAAACATTGTTCTGA
Protein sequence

>Msa0676460

MRKSVTLKAGEVPSRLTRARAVALSTSGQLPPMKEVAPGTQNQKQPLRANSKRAVSDVTYLPRKKRAILQDVTNNCGENTNRSCLNPTEIQAKKRKVAKPAQPDVSNEVPSAAELPPFIADSKPVSSMEMRLRSSEDFRCLDDLEDNAPFRMSSNQCGTNNNLLQSQTSRISARPLSSQKKASQIVAAKKGNISELLDVSKHPDVADIDADFEDPQLCSHYAADIYDHLRVAELSRRPYPNFMETVQQDITPSMRAILVDWLVEVSEGYKLQANTLYLTVYLIDWFLSKNCIERERLQLLGITCMLIATKYEEINAPRIKDFCFITDNTYTKEEVVKLESLVLKSSSYQLFAPTTKTFLRRFLRAAQASYKRPSIELEYLANYLAELTLMNYGFLNFLPSMVAASSVFLARWTLDQSSHPWNPTLEQYASYKASDLKATVLALQDLQLNSNDDCPLTAIRKKYTQDKLNCVAALSSPKLLETLF*