AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0644770

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0644770 MtrunA17_Chr2g0332171 94.021 485 28 1 1 484 1 485 0.0 942
Msa0644770 MtrunA17_Chr2g0332181 66.874 483 101 6 3 484 5 429 0.0 605
Msa0644770 MtrunA17_Chr3g0138431 47.658 491 216 12 8 484 11 474 1.02e-129 385
Msa0644770 MtrunA17_Chr1g0148681 59.247 292 117 2 193 484 128 417 2.60e-115 345
Msa0644770 MtrunA17_Chr3g0125051 52.098 286 131 3 191 472 207 490 1.92e-97 303
Msa0644770 MtrunA17_Chr1g0152871 50.929 269 128 3 212 477 82 349 1.81e-91 283
Msa0644770 MtrunA17_Chr3g0125041 45.520 279 151 1 200 477 222 500 2.52e-86 274
Msa0644770 MtrunA17_Chr3g0134411 44.211 285 155 3 203 484 73 356 1.38e-74 239
Msa0644770 MtrunA17_Chr3g0134421 45.000 280 150 3 203 479 66 344 3.75e-74 237
Msa0644770 MtrunA17_Chr3g0134401 44.891 274 149 2 212 484 65 337 3.06e-72 232
Msa0644770 MtrunA17_Chr3g0134441 47.244 254 131 2 226 477 69 321 1.31e-67 219
Msa0644770 MtrunA17_Chr3g0134431 43.548 248 114 5 225 469 13 237 5.53e-55 184
Msa0644770 MtrunA17_Chr5g0441371 38.909 275 157 8 205 477 148 413 2.60e-53 185
Msa0644770 MtrunA17_Chr5g0406741 38.351 279 162 6 195 472 146 415 6.93e-53 184
Msa0644770 MtrunA17_Chr7g0255771 37.500 280 167 7 204 480 181 455 1.90e-52 184
Msa0644770 MtrunA17_Chr8g0370671 36.803 269 161 5 205 472 159 419 3.07e-48 172
Msa0644770 MtrunA17_Chr8g0357001 36.727 275 165 5 164 437 429 695 7.16e-47 172
Msa0644770 MtrunA17_Chr3g0102851 31.004 229 142 7 254 472 60 282 9.87e-24 100
Msa0644770 MtrunA17_Chr3g0103471 31.441 229 140 9 254 472 50 271 3.27e-21 93.6
Msa0644770 MtrunA17_Chr3g0102861 29.694 229 144 8 254 472 50 271 9.01e-21 92.0
Msa0644770 MtrunA17_Chr3g0102621 29.185 233 148 8 250 472 52 277 1.34e-20 91.7
Msa0644770 MtrunA17_Chr3g0102631 33.533 167 102 5 275 436 4 166 1.17e-18 84.3
Msa0644770 MtrunA17_Chr3g0102651 33.533 167 102 5 275 436 4 166 1.17e-18 84.3
Msa0644770 MtrunA17_Chr3g0102661 33.533 167 102 5 275 436 4 166 1.17e-18 84.3
Msa0644770 MtrunA17_Chr3g0102671 33.533 167 102 5 275 436 4 166 1.17e-18 84.3
Msa0644770 MtrunA17_Chr1g0161581 34.254 181 97 5 241 419 364 524 2.72e-16 81.6
Msa0644770 MtrunA17_Chr5g0418901 37.975 79 49 0 276 354 7 85 1.46e-14 69.3
Msa0644770 MtrunA17_Chr6g0462911 26.667 225 144 7 255 472 75 285 7.72e-12 66.2
Msa0644770 MtrunA17_Chr5g0398791 27.891 147 103 2 247 392 27 171 2.95e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0644770 AT1G80370.1 51.489 470 198 7 16 484 19 459 3.19e-153 444
Msa0644770 AT1G15570.1 51.446 484 192 14 8 484 3 450 1.25e-148 432
Msa0644770 AT5G11300.1 45.763 472 190 10 15 484 27 434 1.86e-129 383
Msa0644770 AT5G25380.3 62.718 287 106 1 198 484 150 435 1.95e-126 375
Msa0644770 AT5G25380.1 62.718 287 106 1 198 484 150 435 1.95e-126 375
Msa0644770 AT5G25380.4 62.718 287 106 1 198 484 156 441 2.97e-126 375
Msa0644770 AT5G25380.2 63.469 271 98 1 198 468 150 419 3.06e-121 361
Msa0644770 AT5G11300.2 44.743 409 161 9 15 421 27 372 8.26e-104 316
Msa0644770 AT1G44110.1 50.714 280 137 1 205 484 178 456 2.35e-96 299
Msa0644770 AT5G43080.1 50.000 280 138 2 206 484 72 350 9.21e-95 291
Msa0644770 AT1G47210.2 49.291 282 139 3 206 484 87 367 1.99e-94 291
Msa0644770 AT5G43080.2 50.357 280 132 3 206 484 72 345 5.40e-93 286
Msa0644770 AT1G77390.1 52.453 265 123 2 204 467 161 423 2.06e-92 288
Msa0644770 AT1G47230.1 48.905 274 136 3 214 484 88 360 4.40e-90 280
Msa0644770 AT1G47230.2 48.043 281 141 4 208 484 82 361 2.05e-88 275
Msa0644770 AT1G47220.1 47.232 271 140 2 206 474 41 310 1.09e-83 261
Msa0644770 AT5G06150.1 35.842 279 169 5 203 480 163 432 2.01e-49 176
Msa0644770 AT1G20610.1 36.713 286 168 9 195 477 149 424 3.54e-48 172
Msa0644770 AT1G76310.1 35.664 286 174 6 197 480 152 429 1.17e-46 167
Msa0644770 AT4G37490.1 36.620 284 166 8 205 482 148 423 1.19e-46 167
Msa0644770 AT3G11520.1 35.254 295 179 5 189 480 124 409 3.26e-46 166
Msa0644770 AT1G76310.2 39.241 237 135 5 197 431 152 381 1.77e-45 163
Msa0644770 AT3G11520.2 37.209 258 151 4 189 443 124 373 1.92e-45 163
Msa0644770 AT2G26760.1 37.591 274 161 7 205 476 113 378 7.11e-45 162
Msa0644770 AT2G17620.1 37.113 291 166 7 195 480 144 422 1.94e-43 159
Msa0644770 AT4G35620.1 37.175 269 160 5 205 472 155 415 1.35e-41 154
Msa0644770 AT1G76310.3 32.484 314 174 7 197 480 152 457 7.87e-41 152
Msa0644770 AT1G16330.1 35.055 271 161 6 171 437 345 604 1.81e-40 154
Msa0644770 AT4G35620.2 39.485 233 133 4 205 436 155 380 2.00e-39 147
Msa0644770 AT1G47210.1 54.717 106 46 1 206 309 87 192 3.13e-35 130
Msa0644770 AT1G76310.4 41.243 177 101 3 197 371 152 327 4.84e-35 134
Msa0644770 AT5G06150.2 36.842 171 105 2 199 368 159 327 1.11e-33 130
Msa0644770 AT1G20590.1 37.107 159 94 2 280 438 63 215 4.00e-28 113
Msa0644770 AT1G14750.2 39.394 165 90 5 250 410 214 372 6.63e-20 92.0
Msa0644770 AT1G14750.1 39.394 165 90 5 250 410 382 540 1.06e-19 92.4
Msa0644770 AT1G14750.3 39.394 165 90 5 250 410 382 540 1.49e-19 92.4
Msa0644770 AT1G14750.4 39.394 165 89 6 250 410 214 371 1.07e-18 88.6
Msa0644770 AT1G34460.2 26.042 192 117 4 176 366 225 392 1.05e-16 82.8
Msa0644770 AT1G34460.4 26.042 192 117 4 176 366 225 392 1.05e-16 82.8
Msa0644770 AT1G34460.7 26.425 193 118 4 176 366 225 395 1.16e-16 82.8
Msa0644770 AT1G34460.5 26.425 193 118 4 176 366 225 395 1.22e-16 82.8
Msa0644770 AT1G34460.6 26.425 193 118 4 176 366 225 395 1.25e-16 82.8
Msa0644770 AT1G34460.3 26.425 193 118 4 176 366 225 395 1.25e-16 82.8
Msa0644770 AT1G34460.8 26.425 193 118 4 176 366 225 395 1.25e-16 82.8
Msa0644770 AT1G34460.1 26.425 193 118 4 176 366 225 395 1.25e-16 82.8
Msa0644770 AT1G34460.9 26.425 193 118 4 176 366 211 381 1.46e-16 82.4

Find 122 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAGAAATGTTACCTTTCT+TGG 0.133114 4_3:+49062618 None:intergenic
ATCATAAATCATTACAAATT+AGG 0.165505 4_3:+49060394 None:intergenic
TCATAAATCATTACAAATTA+GGG 0.211389 4_3:+49060395 None:intergenic
CTTAAATCCAACTGAAATTC+AGG 0.218558 4_3:-49063209 Msa0644770:intron
TTAGATCATCAGAAGATTTC+AGG 0.248087 4_3:-49062930 Msa0644770:CDS
TAGAGACAGATAAATAATTT+TGG 0.251664 4_3:-49064355 Msa0644770:five_prime_UTR
TTCTTGCGGATGGTGGTTAA+AGG 0.253447 4_3:+49060680 None:intergenic
AACAATGTTTCAAGCAGTTT+TGG 0.255031 4_3:+49060453 None:intergenic
TGCTTCTGATTCTGAGTTCC+TGG 0.256521 4_3:+49063349 None:intergenic
AGGTAACATTTCTGAACTTT+TGG 0.265548 4_3:-49062611 Msa0644770:CDS
CTTAAACTTCCTTCCTTCTA+TGG 0.274701 4_3:-49060954 Msa0644770:CDS
TTTCAGGTGCTTAGATGATT+TGG 0.298761 4_3:-49062914 Msa0644770:CDS
ATATACATTTAGTGACCTTA+TGG 0.323409 4_3:-49060270 Msa0644770:three_prime_UTR
TCCAAGCATGCGTGCGATAC+TGG 0.334324 4_3:-49062223 Msa0644770:CDS
TGTACTGTTTCCATGAAGTT+AGG 0.339878 4_3:+49062258 None:intergenic
TGGTTGGAACTCATCCTAAA+AGG 0.349846 4_3:+49062880 None:intergenic
TAGATTTGAATCCAACCTTT+GGG 0.353052 4_3:+49060070 None:intergenic
CAAATCTGATGCTTTGTAAG+AGG 0.356045 4_3:+49060757 None:intergenic
CCTGGTGCTACCTCCTTCAT+TGG 0.361989 4_3:+49063367 None:intergenic
ATCTGAAATCAAGACATTCT+AGG 0.364711 4_3:+49060198 None:intergenic
GAAACACCTGAGGAAAGTTT+TGG 0.367596 4_3:+49061273 None:intergenic
GCGTCTATGTCAGCGACATC+TGG 0.374347 4_3:+49062574 None:intergenic
TCACTGTATATCTCATTGAT+TGG 0.374427 4_3:-49061873 Msa0644770:CDS
CAAAGGTTGGATTCAAATCT+AGG 0.379811 4_3:-49060068 Msa0644770:three_prime_UTR
TAGCATTGAGTTGGAGTACT+TGG 0.388611 4_3:-49061017 Msa0644770:CDS
CTAGATTTGAATCCAACCTT+TGG 0.391094 4_3:+49060069 None:intergenic
TGAATCCAACCTTTGGGGTC+AGG 0.391190 4_3:+49060076 None:intergenic
GAAGATGCAGCGACCATAGA+AGG 0.394096 4_3:+49060941 None:intergenic
GAACTAACACTGATGAACTA+TGG 0.399485 4_3:-49060980 Msa0644770:CDS
TGATTGACAGGTAGTAAAAC+TGG 0.408227 4_3:-49061344 Msa0644770:intron
AAGGCCTTATCCTAACTTCA+TGG 0.409072 4_3:-49062268 Msa0644770:CDS
GAACTTTGGATACTAAATCT+TGG 0.419346 4_3:+49063508 None:intergenic
TTATCTTCCTTCAATGGAGC+TGG 0.421163 4_3:-49064250 Msa0644770:five_prime_UTR
TATACATTTAGTGACCTTAT+GGG 0.431397 4_3:-49060269 Msa0644770:three_prime_UTR
CAAATTGTTGCAGCCAAGAA+AGG 0.441666 4_3:-49062631 Msa0644770:CDS
CCTTTGAGTTCTCAGAAGAA+AGG 0.448840 4_3:-49062802 Msa0644770:intron
ACCAGTATCGCACGCATGCT+TGG 0.449229 4_3:+49062222 None:intergenic
GGAACCTCATTTGAAACATC+AGG 0.452258 4_3:+49063018 None:intergenic
TCTTGCGGATGGTGGTTAAA+GGG 0.453771 4_3:+49060681 None:intergenic
GCTGTGGCTTTAAGTACATC+TGG 0.460174 4_3:-49063400 Msa0644770:CDS
AACTTCACCAGCTCCATTGA+AGG 0.460264 4_3:+49064243 None:intergenic
CTCAAAACCGGTGAGTTCAA+TGG 0.463382 4_3:-49062962 Msa0644770:CDS
GTTTCCATGAAGTTAGGATA+AGG 0.469825 4_3:+49062264 None:intergenic
TTTGAAACATCAGGTTGAGC+AGG 0.471682 4_3:+49063027 None:intergenic
TATTATATTGGTAGTGGAAG+CGG 0.471935 4_3:-49064320 Msa0644770:five_prime_UTR
AAACATTGTTCTGAATATGA+TGG 0.489279 4_3:-49060440 Msa0644770:exon
AAGAGTGTCACTCTGAAAGC+TGG 0.489355 4_3:-49063454 Msa0644770:CDS
TAGAATGTCTTGATTTCAGA+TGG 0.493368 4_3:-49060196 Msa0644770:three_prime_UTR
CGCATTTCCATTGAACTCAC+CGG 0.493862 4_3:+49062955 None:intergenic
ATGTCTGCCAGGCTAAGAAA+AGG 0.496711 4_3:-49063062 Msa0644770:intron
AAGAGAGAGACTTCAGCTAC+TGG 0.497350 4_3:-49061827 Msa0644770:CDS
GAGGCATAGTGTTCAAGAGT+TGG 0.504331 4_3:+49060776 None:intergenic
TCAACCTGATGTTTCAAATG+AGG 0.507462 4_3:-49063022 Msa0644770:CDS
TGCGTGCGATACTGGTTGAT+TGG 0.508489 4_3:-49062215 Msa0644770:CDS
GAGCAGATATTCGAGATGTC+TGG 0.508698 4_3:+49062827 None:intergenic
ATAAGCAAGAACCTCCCATA+AGG 0.511095 4_3:+49060255 None:intergenic
TATGCAACCTGAATTTCAGT+TGG 0.513953 4_3:+49063202 None:intergenic
AATTCATGTTCAGGTTTCTG+AGG 0.514222 4_3:-49061926 Msa0644770:intron
GGTGCTACCTCCTTCATTGG+TGG 0.514272 4_3:+49063370 None:intergenic
GGAGTACTTGGCAAATTACC+TGG 0.519674 4_3:-49061005 Msa0644770:CDS
ATTGTGGCGAAAATACAAAC+AGG 0.527010 4_3:-49063237 Msa0644770:CDS
AAGTTTGCAGCATAGATCTC+AGG 0.530359 4_3:-49064225 Msa0644770:five_prime_UTR
GCATTCCTGACCCCAAAGGT+TGG 0.535284 4_3:-49060081 Msa0644770:three_prime_UTR
AGCAAATAGTTGATATGAAG+AGG 0.537833 4_3:+49061303 None:intergenic
TGGACAGTTACCACCAATGA+AGG 0.540275 4_3:-49063380 Msa0644770:CDS
CGAGCACGAGTCAATCGACT+TGG 0.540414 4_3:+49063424 None:intergenic
GTTCATAGCTGACTCAAAAC+CGG 0.542331 4_3:-49062974 Msa0644770:CDS
TCATCAGTGTTAGTTCAGCC+AGG 0.544691 4_3:+49060987 None:intergenic
GCAGAGGCCTAGCATTGAGT+TGG 0.548505 4_3:-49061026 Msa0644770:intron
CCAATGAAGGAGGTAGCACC+AGG 0.548598 4_3:-49063367 Msa0644770:CDS
TTGTGTGTACTTCTTGCGGA+TGG 0.551183 4_3:+49060670 None:intergenic
CTACTACCAAAACTTTCCTC+AGG 0.552988 4_3:-49061279 Msa0644770:intron
ATTCATGTTCAGGTTTCTGA+GGG 0.554200 4_3:-49061925 Msa0644770:intron
ATTGTTTGTGCCACACTGGT+TGG 0.556087 4_3:+49062864 None:intergenic
CTTCCGTGTTTCTTGCACGA+TGG 0.556981 4_3:-49060922 Msa0644770:CDS
TAGATCAGTCAAGCCACCCA+TGG 0.558247 4_3:-49060895 Msa0644770:CDS
ATCAAAATAACCTTAAATTG+TGG 0.561404 4_3:-49064489 Msa0644770:five_prime_UTR
GGTGGTAGCTCAGCAGCTGA+TGG 0.562864 4_3:+49062997 None:intergenic
AAGTACTCCAACTCAATGCT+AGG 0.564248 4_3:+49061019 None:intergenic
GCTGGCATTCCTGACCCCAA+AGG 0.566725 4_3:-49060085 Msa0644770:three_prime_UTR
TTGGGGTCAGGAATGCCAGC+AGG 0.566814 4_3:+49060088 None:intergenic
TGTGTACTTCTTGCGGATGG+TGG 0.566856 4_3:+49060673 None:intergenic
CATATATATCAGCAGCATAG+TGG 0.569484 4_3:+49062524 None:intergenic
TGTCTTGTGTGTACTTCTTG+CGG 0.570627 4_3:+49060666 None:intergenic
ACTGGTTGATTGGCTTGTTG+AGG 0.576476 4_3:-49062205 Msa0644770:intron
AGCGGCACAAGCTTCCTACA+AGG 0.577919 4_3:-49061141 Msa0644770:intron
ATTGACTCGTGCTCGAGCTG+TGG 0.579601 4_3:-49063416 Msa0644770:CDS
GGATAACACATACACAAAAG+AGG 0.584093 4_3:-49061641 Msa0644770:CDS
AGAGAGAGACTTCAGCTACT+GGG 0.585840 4_3:-49061826 Msa0644770:CDS
CAAGATGTCACTAACAATTG+TGG 0.589172 4_3:-49063253 Msa0644770:CDS
CCTTTCTTCTGAGAACTCAA+AGG 0.595834 4_3:+49062802 None:intergenic
GCATAGTGGCTGCATAGTTG+AGG 0.597253 4_3:+49062538 None:intergenic
TTGTAGGAGGTTTCTTCGAG+CGG 0.597311 4_3:-49061159 Msa0644770:intron
ATGGACAAATGATGAATGCA+AGG 0.598852 4_3:-49060421 Msa0644770:three_prime_UTR
TGACCACTTGCGTGTTGCTG+AGG 0.600917 4_3:-49062503 Msa0644770:intron
TAAAGACTTCTGCTTCATCA+CGG 0.601348 4_3:-49061662 Msa0644770:CDS
GATTATTGTTTGTGCCACAC+TGG 0.602071 4_3:+49062860 None:intergenic
ATGCAGCGACCATAGAAGGA+AGG 0.622018 4_3:+49060945 None:intergenic
AGATCAGTCAAGCCACCCAT+GGG 0.623354 4_3:-49060894 Msa0644770:intron
ACATTTAGTGACCTTATGGG+AGG 0.623854 4_3:-49060266 Msa0644770:three_prime_UTR
AGCAGAAGTCTTTAATACGA+GGG 0.626136 4_3:+49061671 None:intergenic
CAAGAAGTACACACAAGACA+AGG 0.627309 4_3:-49060663 Msa0644770:intron
AGACATCTCGAATATCTGCT+CGG 0.628981 4_3:-49062825 Msa0644770:CDS
AGATTTGAATCCAACCTTTG+GGG 0.631950 4_3:+49060071 None:intergenic
CGGTGAGTTCAATGGAAATG+CGG 0.632380 4_3:-49062954 Msa0644770:CDS
TGTCCATCGTGCAAGAAACA+CGG 0.632857 4_3:+49060919 None:intergenic
GTCAGATGCAACTTAATCAG+AGG 0.640910 4_3:+49060044 None:intergenic
CCAGGCTAAGAAAAGGAAGG+TGG 0.645605 4_3:-49063055 Msa0644770:intron
AAACCTCAGCAACACGCAAG+TGG 0.651996 4_3:+49062500 None:intergenic
GCAGAAGTCTTTAATACGAG+GGG 0.653858 4_3:+49061672 None:intergenic
CATAAATCATTACAAATTAG+GGG 0.653878 4_3:+49060396 None:intergenic
CTGCCAGGCTAAGAAAAGGA+AGG 0.656987 4_3:-49063058 Msa0644770:intron
AAGCAGAAGTCTTTAATACG+AGG 0.678996 4_3:+49061670 None:intergenic
GAAAAGAACTAACCCATGGG+TGG 0.679908 4_3:+49060882 None:intergenic
TAACACATACACAAAAGAGG+AGG 0.680647 4_3:-49061638 Msa0644770:intron
AGGATGAGTTCCAACCAGTG+TGG 0.684018 4_3:-49062874 Msa0644770:CDS
AGGAATGCCAGCAGGATACG+CGG 0.687594 4_3:+49060096 None:intergenic
GATGTGTACTGTGTCACAGT+AGG 0.688059 4_3:-49060371 Msa0644770:three_prime_UTR
ACAGTTACCACCAATGAAGG+AGG 0.688615 4_3:-49063377 Msa0644770:CDS
TTTGAGTCAGCTATGAACGG+TGG 0.693132 4_3:+49062979 None:intergenic
TGGACAAATGATGAATGCAA+GGG 0.702925 4_3:-49060420 Msa0644770:three_prime_UTR
AATCAATGAGATATACAGTG+AGG 0.724831 4_3:+49061875 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAAAATTAAATATAAAA+GGG + chr4_3:49060847-49060866 None:intergenic 0.0%
!! AATTAAAAATTAAATATAAA+AGG + chr4_3:49060848-49060867 None:intergenic 0.0%
!!! TTTGATACATATTTTAAAAT+AGG - chr4_3:49060425-49060444 Msa0644770:three_prime_UTR 10.0%
!!! TTGTTAAATTTTATTGTTAT+TGG - chr4_3:49060872-49060891 Msa0644770:intron 10.0%
!!! TTTTTTATTAACTTCATTCT+GGG - chr4_3:49060314-49060333 Msa0644770:three_prime_UTR 15.0%
!!! ATATTTTAAAATAGGAAACT+TGG - chr4_3:49060433-49060452 Msa0644770:exon 15.0%
!!! TGTCTTATTGTTATTATTTT+TGG - chr4_3:49060559-49060578 Msa0644770:intron 15.0%
!! TTTATTTGAGTAATTTCATA+TGG + chr4_3:49063651-49063670 None:intergenic 15.0%
!! TCATAAATCATTACAAATTA+GGG + chr4_3:49064100-49064119 None:intergenic 15.0%
!! ATCATAAATCATTACAAATT+AGG + chr4_3:49064101-49064120 None:intergenic 15.0%
!! ATCAAAATAACCTTAAATTG+TGG - chr4_3:49060003-49060022 Msa0644770:three_prime_UTR 20.0%
!!! TAGAGACAGATAAATAATTT+TGG - chr4_3:49060137-49060156 Msa0644770:three_prime_UTR 20.0%
!!! TTCTTTTATTATATTGGTAG+TGG - chr4_3:49060166-49060185 Msa0644770:three_prime_UTR 20.0%
!!! GTTTTTTATTAACTTCATTC+TGG - chr4_3:49060313-49060332 Msa0644770:three_prime_UTR 20.0%
!! TTTAAACACAGAAAATGTAA+AGG + chr4_3:49060900-49060919 None:intergenic 20.0%
!!! ATAAATGACTTTTAGTTAGT+TGG - chr4_3:49061794-49061813 Msa0644770:intron 20.0%
!! TTTATAAAATGCATGCTAAT+CGG - chr4_3:49062079-49062098 Msa0644770:intron 20.0%
!! AACTAATATAATACACATCT+AGG + chr4_3:49062508-49062527 None:intergenic 20.0%
!! TAGTCATTAGATTTCATTTA+GGG - chr4_3:49063028-49063047 Msa0644770:CDS 20.0%
!! AAAAACAGAAGTAGAAATTA+AGG + chr4_3:49063680-49063699 None:intergenic 20.0%
!! GTTATGTTACAAAGTAAATA+GGG + chr4_3:49063943-49063962 None:intergenic 20.0%
!! AGTTATGTTACAAAGTAAAT+AGG + chr4_3:49063944-49063963 None:intergenic 20.0%
!! CATAAATCATTACAAATTAG+GGG + chr4_3:49064099-49064118 None:intergenic 20.0%
!! TTTTCATTAGCCACAATTTA+AGG + chr4_3:49060016-49060035 None:intergenic 25.0%
! TAATGAAAAAAGTTAGGGTA+AGG - chr4_3:49060027-49060046 Msa0644770:three_prime_UTR 25.0%
! AATGAAAAAAGTTAGGGTAA+GGG - chr4_3:49060028-49060047 Msa0644770:three_prime_UTR 25.0%
!!! TTATTTTGCTAATTTTGTGC+AGG + chr4_3:49060093-49060112 None:intergenic 25.0%
! TGAGCTTAAAAGAGAAAAAA+AGG - chr4_3:49060376-49060395 Msa0644770:three_prime_UTR 25.0%
! GAGCTTAAAAGAGAAAAAAA+GGG - chr4_3:49060377-49060396 Msa0644770:three_prime_UTR 25.0%
! TCATTTCAGCAACATAAAAA+TGG + chr4_3:49060520-49060539 None:intergenic 25.0%
! AATAAGACAAACAACATACA+TGG + chr4_3:49060548-49060567 None:intergenic 25.0%
!! AATGTTTGGATGTCAAATTT+TGG + chr4_3:49060600-49060619 None:intergenic 25.0%
!!! ATCCAAACATTTTTGTTTCA+TGG - chr4_3:49060609-49060628 Msa0644770:intron 25.0%
! AACCATGAAACAAAAATGTT+TGG + chr4_3:49060614-49060633 None:intergenic 25.0%
!!! CATTTTTGTTTCATGGTTTA+TGG - chr4_3:49060616-49060635 Msa0644770:intron 25.0%
! TAAAATTGATGAGTGCATTA+AGG - chr4_3:49060733-49060752 Msa0644770:CDS 25.0%
! TGCAGATAGTAACATAAAAA+TGG - chr4_3:49060821-49060840 Msa0644770:intron 25.0%
! CCAAAAATTCAAAAGAACTT+TGG + chr4_3:49061001-49061020 None:intergenic 25.0%
!! CCAAAGTTCTTTTGAATTTT+TGG - chr4_3:49060998-49061017 Msa0644770:CDS 25.0%
! TGCATATATCCAATATCAAA+TGG - chr4_3:49061307-49061326 Msa0644770:CDS 25.0%
! AAACAAGAACCATTTGATAT+TGG + chr4_3:49061319-49061338 None:intergenic 25.0%
! TTTGTCTTGAAATGTATTGA+AGG - chr4_3:49061338-49061357 Msa0644770:intron 25.0%
! CAATGTACTACATAAATAGA+GGG + chr4_3:49061719-49061738 None:intergenic 25.0%
! ACAATGTACTACATAAATAG+AGG + chr4_3:49061720-49061739 None:intergenic 25.0%
!! TCTTGAACAGATTTCTTTTA+TGG + chr4_3:49061764-49061783 None:intergenic 25.0%
!!! AACTTAGTTGTGGTTATTTT+TGG - chr4_3:49061827-49061846 Msa0644770:CDS 25.0%
!! CTCTCTTTCAATACAATTTT+TGG + chr4_3:49062652-49062671 None:intergenic 25.0%
! ATGAGCATTACTAAACATAA+TGG + chr4_3:49062754-49062773 None:intergenic 25.0%
!! TGATTAATACTAAAGTACCA+AGG - chr4_3:49062917-49062936 Msa0644770:CDS 25.0%
! AAATGAAATCTAATGACTAG+AGG + chr4_3:49063027-49063046 None:intergenic 25.0%
! CTAGTCATTAGATTTCATTT+AGG - chr4_3:49063027-49063046 Msa0644770:CDS 25.0%
!! TTTCATTTAGGGTCTTAAAA+AGG - chr4_3:49063039-49063058 Msa0644770:CDS 25.0%
!! TTTTTGTAAAGACTACTGAA+CGG + chr4_3:49063263-49063282 None:intergenic 25.0%
! CAATTATCTTAGTACATTCT+TGG - chr4_3:49063308-49063327 Msa0644770:CDS 25.0%
! TTTGAGTAATTTCATATGGA+AGG + chr4_3:49063647-49063666 None:intergenic 25.0%
!! AAACATTGTTCTGAATATGA+TGG - chr4_3:49064052-49064071 Msa0644770:intron 25.0%
! ATATACATTTAGTGACCTTA+TGG - chr4_3:49064222-49064241 Msa0644770:five_prime_UTR 25.0%
! TATACATTTAGTGACCTTAT+GGG - chr4_3:49064223-49064242 Msa0644770:five_prime_UTR 25.0%
TGTGGCTAATGAAAAAAGTT+AGG - chr4_3:49060021-49060040 Msa0644770:three_prime_UTR 30.0%
GTGGCTAATGAAAAAAGTTA+GGG - chr4_3:49060022-49060041 Msa0644770:three_prime_UTR 30.0%
CGTGACTAATGAAAAAAGTT+AGG - chr4_3:49060113-49060132 Msa0644770:three_prime_UTR 30.0%
!! TATTATATTGGTAGTGGAAG+CGG - chr4_3:49060172-49060191 Msa0644770:three_prime_UTR 30.0%
! GACTTTTTATCTTCCTTCAA+TGG - chr4_3:49060236-49060255 Msa0644770:three_prime_UTR 30.0%
!!! AGGTCATTTTTCATACACAA+AGG - chr4_3:49060287-49060306 Msa0644770:three_prime_UTR 30.0%
TTTATTAACTTCATTCTGGG+TGG - chr4_3:49060317-49060336 Msa0644770:three_prime_UTR 30.0%
! TTTTCTGGGTTATTCTGATT+TGG - chr4_3:49060340-49060359 Msa0644770:three_prime_UTR 30.0%
TTTCTGGGTTATTCTGATTT+GGG - chr4_3:49060341-49060360 Msa0644770:three_prime_UTR 30.0%
! GAAACTTGGACAACATTTTA+AGG - chr4_3:49060447-49060466 Msa0644770:exon 30.0%
TTCTTTGATGTTACTGTAGT+TGG - chr4_3:49060765-49060784 Msa0644770:CDS 30.0%
TCTTTGATGTTACTGTAGTT+GGG - chr4_3:49060766-49060785 Msa0644770:CDS 30.0%
GAACTTTGGATACTAAATCT+TGG + chr4_3:49060987-49061006 None:intergenic 30.0%
!!! TCTTTTAGAATTGGCTCTTA+GGG + chr4_3:49061171-49061190 None:intergenic 30.0%
!!! TGAAACTGCTCTTTTAGAAT+TGG + chr4_3:49061180-49061199 None:intergenic 30.0%
ATATCTTCCTCGTAAAAAGA+GGG - chr4_3:49061208-49061227 Msa0644770:intron 30.0%
CTTAAATCCAACTGAAATTC+AGG - chr4_3:49061283-49061302 Msa0644770:CDS 30.0%
AAGGATTCATATCTCAATAG+TGG - chr4_3:49061357-49061376 Msa0644770:intron 30.0%
!! TTCATATCTCAATAGTGGAT+AGG - chr4_3:49061362-49061381 Msa0644770:intron 30.0%
TTAGATCATCAGAAGATTTC+AGG - chr4_3:49061562-49061581 Msa0644770:intron 30.0%
TTCAGAAATGTTACCTTTCT+TGG + chr4_3:49061877-49061896 None:intergenic 30.0%
! AGGTAACATTTCTGAACTTT+TGG - chr4_3:49061881-49061900 Msa0644770:CDS 30.0%
TATGTGCAGTAAAGCAATAT+TGG + chr4_3:49062050-49062069 None:intergenic 30.0%
GACAAACAACTTAGCATAAA+AGG + chr4_3:49062177-49062196 None:intergenic 30.0%
TCATATTGTTCAGCTAAACT+TGG + chr4_3:49062365-49062384 None:intergenic 30.0%
TGAACATGAATTCAACACAT+GGG + chr4_3:49062558-49062577 None:intergenic 30.0%
AATCAATGAGATATACAGTG+AGG + chr4_3:49062620-49062639 None:intergenic 30.0%
TCACTGTATATCTCATTGAT+TGG - chr4_3:49062619-49062638 Msa0644770:CDS 30.0%
! TAAACATAATGGAACACAAG+AGG + chr4_3:49062743-49062762 None:intergenic 30.0%
CTGAAAGTAGCAATTTCATA+TGG - chr4_3:49062956-49062975 Msa0644770:CDS 30.0%
!!! TTTGCTGTTTTGTAAGTATG+TGG - chr4_3:49063087-49063106 Msa0644770:intron 30.0%
!! TACTCAATGTATTGATTGAC+AGG - chr4_3:49063136-49063155 Msa0644770:intron 30.0%
! AGCAAATAGTTGATATGAAG+AGG + chr4_3:49063192-49063211 None:intergenic 30.0%
TGTACTAAGATAATTGCAAG+AGG + chr4_3:49063304-49063323 None:intergenic 30.0%
!!! TAGTACATTCTTGGTTTTGT+AGG - chr4_3:49063317-49063336 Msa0644770:CDS 30.0%
AGTAATGCTCAATACAAATC+TGG + chr4_3:49063420-49063439 None:intergenic 30.0%
!! CTCTGCATGTTTTATTCAAT+TGG + chr4_3:49063452-49063471 None:intergenic 30.0%
CAATTGAATAAAACATGCAG+AGG - chr4_3:49063450-49063469 Msa0644770:CDS 30.0%
AAAGAAAAGAACTAACCCAT+GGG + chr4_3:49063616-49063635 None:intergenic 30.0%
! AACAATGTTTCAAGCAGTTT+TGG + chr4_3:49064042-49064061 None:intergenic 30.0%
! ATCTGAAATCAAGACATTCT+AGG + chr4_3:49064297-49064316 None:intergenic 30.0%
TAGAATGTCTTGATTTCAGA+TGG - chr4_3:49064296-49064315 Msa0644770:five_prime_UTR 30.0%
TAGATTTGAATCCAACCTTT+GGG + chr4_3:49064425-49064444 None:intergenic 30.0%
ACTTCGAGCAAAATGAAAAA+AGG - chr4_3:49064472-49064491 Msa0644770:five_prime_UTR 30.0%
CTTCGAGCAAAATGAAAAAA+GGG - chr4_3:49064473-49064492 Msa0644770:five_prime_UTR 30.0%
! TCTGTTGTTCTAAGTGCATT+TGG - chr4_3:49060664-49060683 Msa0644770:CDS 35.0%
TCTAAGTGCATTTGGAAACA+TGG - chr4_3:49060672-49060691 Msa0644770:CDS 35.0%
TGTGATTGCTTCAAACATCA+AGG - chr4_3:49060703-49060722 Msa0644770:CDS 35.0%
! TTTTGGATCTTGTAGAGATG+AGG - chr4_3:49061015-49061034 Msa0644770:CDS 35.0%
!!! CTTTTAGAATTGGCTCTTAG+GGG + chr4_3:49061170-49061189 None:intergenic 35.0%
!!! CTCTTTTAGAATTGGCTCTT+AGG + chr4_3:49061172-49061191 None:intergenic 35.0%
CATATCTTCCTCGTAAAAAG+AGG - chr4_3:49061207-49061226 Msa0644770:intron 35.0%
CAAGATGTCACTAACAATTG+TGG - chr4_3:49061239-49061258 Msa0644770:intron 35.0%
ATTGTGGCGAAAATACAAAC+AGG - chr4_3:49061255-49061274 Msa0644770:intron 35.0%
TATGCAACCTGAATTTCAGT+TGG + chr4_3:49061293-49061312 None:intergenic 35.0%
TCAACCTGATGTTTCAAATG+AGG - chr4_3:49061470-49061489 Msa0644770:intron 35.0%
! TTTCAGGTGCTTAGATGATT+TGG - chr4_3:49061578-49061597 Msa0644770:intron 35.0%
!!! ACTTTTAGTTAGTTGGTGAC+TGG - chr4_3:49061801-49061820 Msa0644770:intron 35.0%
CATATATATCAGCAGCATAG+TGG + chr4_3:49061971-49061990 None:intergenic 35.0%
!!! CATTTTTTCAGCTGTCAAGA+AGG - chr4_3:49062205-49062224 Msa0644770:intron 35.0%
GTTTCCATGAAGTTAGGATA+AGG + chr4_3:49062231-49062250 None:intergenic 35.0%
TGTACTGTTTCCATGAAGTT+AGG + chr4_3:49062237-49062256 None:intergenic 35.0%
CTGAACATGAATTCAACACA+TGG + chr4_3:49062559-49062578 None:intergenic 35.0%
CATGTGTTGAATTCATGTTC+AGG - chr4_3:49062557-49062576 Msa0644770:CDS 35.0%
! AATTCATGTTCAGGTTTCTG+AGG - chr4_3:49062566-49062585 Msa0644770:CDS 35.0%
! ATTCATGTTCAGGTTTCTGA+GGG - chr4_3:49062567-49062586 Msa0644770:CDS 35.0%
CACGTAAGTTCTCAACTTAA+GGG - chr4_3:49062710-49062729 Msa0644770:intron 35.0%
AGCAGAAGTCTTTAATACGA+GGG + chr4_3:49062824-49062843 None:intergenic 35.0%
AAGCAGAAGTCTTTAATACG+AGG + chr4_3:49062825-49062844 None:intergenic 35.0%
TAAAGACTTCTGCTTCATCA+CGG - chr4_3:49062830-49062849 Msa0644770:CDS 35.0%
GGATAACACATACACAAAAG+AGG - chr4_3:49062851-49062870 Msa0644770:CDS 35.0%
TAACACATACACAAAAGAGG+AGG - chr4_3:49062854-49062873 Msa0644770:CDS 35.0%
!! GTTTTGATGTATGCTTTCCT+TGG + chr4_3:49062937-49062956 None:intergenic 35.0%
TGATTGACAGGTAGTAAAAC+TGG - chr4_3:49063148-49063167 Msa0644770:intron 35.0%
!!! TACATTCTTGGTTTTGTAGG+AGG - chr4_3:49063320-49063339 Msa0644770:CDS 35.0%
! GATCGATCTTTTTACCTTGT+AGG + chr4_3:49063368-49063387 None:intergenic 35.0%
ACAAGGTAAAAAGATCGATC+TGG - chr4_3:49063368-49063387 Msa0644770:CDS 35.0%
CAAGGTAAAAAGATCGATCT+GGG - chr4_3:49063369-49063388 Msa0644770:CDS 35.0%
GAACTAACACTGATGAACTA+TGG - chr4_3:49063512-49063531 Msa0644770:five_prime_UTR 35.0%
CTTAAACTTCCTTCCTTCTA+TGG - chr4_3:49063538-49063557 Msa0644770:intron 35.0%
GAAAGAAAAGAACTAACCCA+TGG + chr4_3:49063617-49063636 None:intergenic 35.0%
CAAATCTGATGCTTTGTAAG+AGG + chr4_3:49063738-49063757 None:intergenic 35.0%
ATGGACAAATGATGAATGCA+AGG - chr4_3:49064071-49064090 Msa0644770:intron 35.0%
TGGACAAATGATGAATGCAA+GGG - chr4_3:49064072-49064091 Msa0644770:intron 35.0%
AGATTTGAATCCAACCTTTG+GGG + chr4_3:49064424-49064443 None:intergenic 35.0%
CTAGATTTGAATCCAACCTT+TGG + chr4_3:49064426-49064445 None:intergenic 35.0%
CAAAGGTTGGATTCAAATCT+AGG - chr4_3:49064424-49064443 Msa0644770:five_prime_UTR 35.0%
CAAAATGAAAAAAGGGATCG+AGG - chr4_3:49064480-49064499 Msa0644770:five_prime_UTR 35.0%
TTATCTTCCTTCAATGGAGC+TGG - chr4_3:49060242-49060261 Msa0644770:three_prime_UTR 40.0%
AAGTTTGCAGCATAGATCTC+AGG - chr4_3:49060267-49060286 Msa0644770:three_prime_UTR 40.0%
! TTCATTCTGGGTGGTTTTCT+GGG - chr4_3:49060326-49060345 Msa0644770:three_prime_UTR 40.0%
! AGAATTGCCCTCTTTTTACG+AGG + chr4_3:49061218-49061237 None:intergenic 40.0%
!!! CTGTTACTTTTATGTCTGCC+AGG - chr4_3:49061419-49061438 Msa0644770:intron 40.0%
!! TTTGAAACATCAGGTTGAGC+AGG + chr4_3:49061468-49061487 None:intergenic 40.0%
! GGAACCTCATTTGAAACATC+AGG + chr4_3:49061477-49061496 None:intergenic 40.0%
!!! GGTTTTGAGTCAGCTATGAA+CGG + chr4_3:49061519-49061538 None:intergenic 40.0%
! GTTCATAGCTGACTCAAAAC+CGG - chr4_3:49061518-49061537 Msa0644770:intron 40.0%
! TGGAAGACAATGCACCTTTT+AGG - chr4_3:49061598-49061617 Msa0644770:intron 40.0%
TGGTTGGAACTCATCCTAAA+AGG + chr4_3:49061615-49061634 None:intergenic 40.0%
GATTATTGTTTGTGCCACAC+TGG + chr4_3:49061635-49061654 None:intergenic 40.0%
AGACATCTCGAATATCTGCT+CGG - chr4_3:49061667-49061686 Msa0644770:CDS 40.0%
! CCTTTCTTCTGAGAACTCAA+AGG + chr4_3:49061693-49061712 None:intergenic 40.0%
! CCTTTGAGTTCTCAGAAGAA+AGG - chr4_3:49061690-49061709 Msa0644770:CDS 40.0%
TGACTGGTGTAACTTAGTTG+TGG - chr4_3:49061817-49061836 Msa0644770:CDS 40.0%
CAAATTGTTGCAGCCAAGAA+AGG - chr4_3:49061861-49061880 Msa0644770:CDS 40.0%
TGGTAGAGACAATTGTGACA+GGG + chr4_3:49062030-49062049 None:intergenic 40.0%
TTGGTAGAGACAATTGTGAC+AGG + chr4_3:49062031-49062050 None:intergenic 40.0%
! AAGGCCTTATCCTAACTTCA+TGG - chr4_3:49062224-49062243 Msa0644770:CDS 40.0%
!! CCTTAAGTTGAGAACTTACG+TGG + chr4_3:49062712-49062731 None:intergenic 40.0%
CCACGTAAGTTCTCAACTTA+AGG - chr4_3:49062709-49062728 Msa0644770:intron 40.0%
GTTCTCAACTTAAGGGAAGT+TGG - chr4_3:49062717-49062736 Msa0644770:intron 40.0%
GCAGAAGTCTTTAATACGAG+GGG + chr4_3:49062823-49062842 None:intergenic 40.0%
GAGATTCTATGTTCTCGTGT+TGG + chr4_3:49062987-49063006 None:intergenic 40.0%
!! CTGAGGAAAGTTTTGGTAGT+AGG + chr4_3:49063215-49063234 None:intergenic 40.0%
CTACTACCAAAACTTTCCTC+AGG - chr4_3:49063213-49063232 Msa0644770:CDS 40.0%
! GAAACACCTGAGGAAAGTTT+TGG + chr4_3:49063222-49063241 None:intergenic 40.0%
AAGTTGACAAGAAACACCTG+AGG + chr4_3:49063232-49063251 None:intergenic 40.0%
AAGTACTCCAACTCAATGCT+AGG + chr4_3:49063476-49063495 None:intergenic 40.0%
!! TAGCATTGAGTTGGAGTACT+TGG - chr4_3:49063475-49063494 Msa0644770:exon 40.0%
TGTCTTGTGTGTACTTCTTG+CGG + chr4_3:49063829-49063848 None:intergenic 40.0%
! CAAGAAGTACACACAAGACA+AGG - chr4_3:49063829-49063848 Msa0644770:intron 40.0%
ACAAGGTATGTCAGAAAGAG+AGG - chr4_3:49063846-49063865 Msa0644770:intron 40.0%
ACATTTAGTGACCTTATGGG+AGG - chr4_3:49064226-49064245 Msa0644770:five_prime_UTR 40.0%
ATAAGCAAGAACCTCCCATA+AGG + chr4_3:49064240-49064259 None:intergenic 40.0%
GTCAGATGCAACTTAATCAG+AGG + chr4_3:49064451-49064470 None:intergenic 40.0%
AACTTCACCAGCTCCATTGA+AGG + chr4_3:49060252-49060271 None:intergenic 45.0%
! CTTCATTCTGGGTGGTTTTC+TGG - chr4_3:49060325-49060344 Msa0644770:three_prime_UTR 45.0%
!! AAGAGTGTCACTCTGAAAGC+TGG - chr4_3:49061038-49061057 Msa0644770:intron 45.0%
!! GCTGTGGCTTTAAGTACATC+TGG - chr4_3:49061092-49061111 Msa0644770:intron 45.0%
TGGACAGTTACCACCAATGA+AGG - chr4_3:49061112-49061131 Msa0644770:intron 45.0%
ACAGTTACCACCAATGAAGG+AGG - chr4_3:49061115-49061134 Msa0644770:intron 45.0%
TGCTTCTGATTCTGAGTTCC+TGG + chr4_3:49061146-49061165 None:intergenic 45.0%
ATGTCTGCCAGGCTAAGAAA+AGG - chr4_3:49061430-49061449 Msa0644770:intron 45.0%
TTTGAGTCAGCTATGAACGG+TGG + chr4_3:49061516-49061535 None:intergenic 45.0%
CTCAAAACCGGTGAGTTCAA+TGG - chr4_3:49061530-49061549 Msa0644770:intron 45.0%
CGCATTTCCATTGAACTCAC+CGG + chr4_3:49061540-49061559 None:intergenic 45.0%
CGGTGAGTTCAATGGAAATG+CGG - chr4_3:49061538-49061557 Msa0644770:intron 45.0%
ATTGTTTGTGCCACACTGGT+TGG + chr4_3:49061631-49061650 None:intergenic 45.0%
GAGCAGATATTCGAGATGTC+TGG + chr4_3:49061668-49061687 None:intergenic 45.0%
!! ACTGGTTGATTGGCTTGTTG+AGG - chr4_3:49062287-49062306 Msa0644770:intron 45.0%
AAGAGAGAGACTTCAGCTAC+TGG - chr4_3:49062665-49062684 Msa0644770:intron 45.0%
AGAGAGAGACTTCAGCTACT+GGG - chr4_3:49062666-49062685 Msa0644770:intron 45.0%
TTGTAGGAGGTTTCTTCGAG+CGG - chr4_3:49063333-49063352 Msa0644770:CDS 45.0%
! GGAGTACTTGGCAAATTACC+TGG - chr4_3:49063487-49063506 Msa0644770:five_prime_UTR 45.0%
TCATCAGTGTTAGTTCAGCC+AGG + chr4_3:49063508-49063527 None:intergenic 45.0%
TGTCCATCGTGCAAGAAACA+CGG + chr4_3:49063576-49063595 None:intergenic 45.0%
GAAAAGAACTAACCCATGGG+TGG + chr4_3:49063613-49063632 None:intergenic 45.0%
GAGGCATAGTGTTCAAGAGT+TGG + chr4_3:49063719-49063738 None:intergenic 45.0%
! TCTTGCGGATGGTGGTTAAA+GGG + chr4_3:49063814-49063833 None:intergenic 45.0%
! TTCTTGCGGATGGTGGTTAA+AGG + chr4_3:49063815-49063834 None:intergenic 45.0%
TTGTGTGTACTTCTTGCGGA+TGG + chr4_3:49063825-49063844 None:intergenic 45.0%
GATGTGTACTGTGTCACAGT+AGG - chr4_3:49064121-49064140 Msa0644770:intron 45.0%
! TTTTTAACCGCGTATCCTGC+TGG - chr4_3:49064389-49064408 Msa0644770:five_prime_UTR 45.0%
!!! TAATATTTCTTTTATTATAT+TGG - chr4_3:49060160-49060179 Msa0644770:three_prime_UTR 5.0%
!!! TTTTTTTTTTTTTTTTTTTG+TGG - chr4_3:49060490-49060509 Msa0644770:intron 5.0%
CTGCCAGGCTAAGAAAAGGA+AGG - chr4_3:49061434-49061453 Msa0644770:intron 50.0%
! CCACCTTCCTTTTCTTAGCC+TGG + chr4_3:49061440-49061459 None:intergenic 50.0%
CCAGGCTAAGAAAAGGAAGG+TGG - chr4_3:49061437-49061456 Msa0644770:intron 50.0%
AGGATGAGTTCCAACCAGTG+TGG - chr4_3:49061618-49061637 Msa0644770:intron 50.0%
GCATAGTGGCTGCATAGTTG+AGG + chr4_3:49061957-49061976 None:intergenic 50.0%
AAACCTCAGCAACACGCAAG+TGG + chr4_3:49061995-49062014 None:intergenic 50.0%
! TGCGTGCGATACTGGTTGAT+TGG - chr4_3:49062277-49062296 Msa0644770:CDS 50.0%
ATGCAGCGACCATAGAAGGA+AGG + chr4_3:49063550-49063569 None:intergenic 50.0%
GAAGATGCAGCGACCATAGA+AGG + chr4_3:49063554-49063573 None:intergenic 50.0%
CTTCCGTGTTTCTTGCACGA+TGG - chr4_3:49063570-49063589 Msa0644770:intron 50.0%
TAGATCAGTCAAGCCACCCA+TGG - chr4_3:49063597-49063616 Msa0644770:intron 50.0%
AGATCAGTCAAGCCACCCAT+GGG - chr4_3:49063598-49063617 Msa0644770:intron 50.0%
TGTGTACTTCTTGCGGATGG+TGG + chr4_3:49063822-49063841 None:intergenic 50.0%
!! TGAATCCAACCTTTGGGGTC+AGG + chr4_3:49064419-49064438 None:intergenic 50.0%
CGAGCACGAGTCAATCGACT+TGG + chr4_3:49061071-49061090 None:intergenic 55.0%
!! ATTGACTCGTGCTCGAGCTG+TGG - chr4_3:49061076-49061095 Msa0644770:intron 55.0%
! GGTGCTACCTCCTTCATTGG+TGG + chr4_3:49061125-49061144 None:intergenic 55.0%
!! CCTGGTGCTACCTCCTTCAT+TGG + chr4_3:49061128-49061147 None:intergenic 55.0%
CCAATGAAGGAGGTAGCACC+AGG - chr4_3:49061125-49061144 Msa0644770:intron 55.0%
GCGTCTATGTCAGCGACATC+TGG + chr4_3:49061921-49061940 None:intergenic 55.0%
! TGACCACTTGCGTGTTGCTG+AGG - chr4_3:49061989-49062008 Msa0644770:intron 55.0%
TCCAAGCATGCGTGCGATAC+TGG - chr4_3:49062269-49062288 Msa0644770:CDS 55.0%
ACCAGTATCGCACGCATGCT+TGG + chr4_3:49062273-49062292 None:intergenic 55.0%
AGCGGCACAAGCTTCCTACA+AGG - chr4_3:49063351-49063370 Msa0644770:CDS 55.0%
! GCAGAGGCCTAGCATTGAGT+TGG - chr4_3:49063466-49063485 Msa0644770:exon 55.0%
AGGAATGCCAGCAGGATACG+CGG + chr4_3:49064399-49064418 None:intergenic 55.0%
GCATTCCTGACCCCAAAGGT+TGG - chr4_3:49064411-49064430 Msa0644770:five_prime_UTR 55.0%
GGTGGTAGCTCAGCAGCTGA+TGG + chr4_3:49061498-49061517 None:intergenic 60.0%
TTGGGGTCAGGAATGCCAGC+AGG + chr4_3:49064407-49064426 None:intergenic 60.0%
GCTGGCATTCCTGACCCCAA+AGG - chr4_3:49064407-49064426 Msa0644770:five_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 49059995 49064519 49059995 ID=Msa0644770;Name=Msa0644770
chr4_3 mRNA 49059995 49064519 49059995 ID=Msa0644770-mRNA-1;Parent=Msa0644770;Name=Msa0644770-mRNA-1;_AED=0.11;_eAED=0.11;_QI=372|1|1|1|0.90|0.83|12|454|484
chr4_3 exon 49059995 49060502 49059995 ID=Msa0644770-mRNA-1:exon:11668;Parent=Msa0644770-mRNA-1
chr4_3 exon 49060664 49060801 49060664 ID=Msa0644770-mRNA-1:exon:11667;Parent=Msa0644770-mRNA-1
chr4_3 exon 49060895 49061044 49060895 ID=Msa0644770-mRNA-1:exon:11666;Parent=Msa0644770-mRNA-1
chr4_3 exon 49061142 49061175 49061142 ID=Msa0644770-mRNA-1:exon:11665;Parent=Msa0644770-mRNA-1
chr4_3 exon 49061280 49061356 49061280 ID=Msa0644770-mRNA-1:exon:11664;Parent=Msa0644770-mRNA-1
chr4_3 exon 49061639 49061714 49061639 ID=Msa0644770-mRNA-1:exon:11663;Parent=Msa0644770-mRNA-1
chr4_3 exon 49061802 49061935 49061802 ID=Msa0644770-mRNA-1:exon:11662;Parent=Msa0644770-mRNA-1
chr4_3 exon 49062206 49062298 49062206 ID=Msa0644770-mRNA-1:exon:11661;Parent=Msa0644770-mRNA-1
chr4_3 exon 49062504 49062658 49062504 ID=Msa0644770-mRNA-1:exon:11660;Parent=Msa0644770-mRNA-1
chr4_3 exon 49062803 49063073 49062803 ID=Msa0644770-mRNA-1:exon:11659;Parent=Msa0644770-mRNA-1
chr4_3 exon 49063210 49063540 49063210 ID=Msa0644770-mRNA-1:exon:11658;Parent=Msa0644770-mRNA-1
chr4_3 exon 49064206 49064519 49064206 ID=Msa0644770-mRNA-1:exon:11657;Parent=Msa0644770-mRNA-1
chr4_3 five_prime_UTR 49064206 49064519 49064206 ID=Msa0644770-mRNA-1:five_prime_utr;Parent=Msa0644770-mRNA-1
chr4_3 five_prime_UTR 49063483 49063540 49063483 ID=Msa0644770-mRNA-1:five_prime_utr;Parent=Msa0644770-mRNA-1
chr4_3 CDS 49063210 49063482 49063210 ID=Msa0644770-mRNA-1:cds;Parent=Msa0644770-mRNA-1
chr4_3 CDS 49062803 49063073 49062803 ID=Msa0644770-mRNA-1:cds;Parent=Msa0644770-mRNA-1
chr4_3 CDS 49062504 49062658 49062504 ID=Msa0644770-mRNA-1:cds;Parent=Msa0644770-mRNA-1
chr4_3 CDS 49062206 49062298 49062206 ID=Msa0644770-mRNA-1:cds;Parent=Msa0644770-mRNA-1
chr4_3 CDS 49061802 49061935 49061802 ID=Msa0644770-mRNA-1:cds;Parent=Msa0644770-mRNA-1
chr4_3 CDS 49061639 49061714 49061639 ID=Msa0644770-mRNA-1:cds;Parent=Msa0644770-mRNA-1
chr4_3 CDS 49061280 49061356 49061280 ID=Msa0644770-mRNA-1:cds;Parent=Msa0644770-mRNA-1
chr4_3 CDS 49061142 49061175 49061142 ID=Msa0644770-mRNA-1:cds;Parent=Msa0644770-mRNA-1
chr4_3 CDS 49060895 49061044 49060895 ID=Msa0644770-mRNA-1:cds;Parent=Msa0644770-mRNA-1
chr4_3 CDS 49060664 49060801 49060664 ID=Msa0644770-mRNA-1:cds;Parent=Msa0644770-mRNA-1
chr4_3 CDS 49060449 49060502 49060449 ID=Msa0644770-mRNA-1:cds;Parent=Msa0644770-mRNA-1
chr4_3 three_prime_UTR 49059995 49060448 49059995 ID=Msa0644770-mRNA-1:three_prime_utr;Parent=Msa0644770-mRNA-1
Gene Sequence

>Msa0644770

ATGAGGAAGAGTGTCACTCTGAAAGCTGGAGAAGTTCCAAGTCGATTGACTCGTGCTCGAGCTGTGGCTTTAAGTACATCTGGACAGTTACCACCAATGAAGGAGGTAGCACCAGGAACTCAGAATCAGAAGCAGCCCCTAAGAGCCAATTCTAAAAGAGCAGTTTCAGATGTTACATATCTTCCTCGTAAAAAGAGGGCAATTCTTCAAGATGTCACTAACAATTGTGGCGAAAATACAAACAGGAGTTGCTTAAATCCAACTGAAATTCAGGCTAAGAAAAGGAAGGTGGCTAAGCCTGCTCAACCTGATGTTTCAAATGAGGTTCCATCAGCTGCTGAGCTACCACCGTTCATAGCTGACTCAAAACCGGTGAGTTCAATGGAAATGCGGCTTAGATCATCAGAAGATTTCAGGTGCTTAGATGATTTGGAAGACAATGCACCTTTTAGGATGAGTTCCAACCAGTGTGGCACAAACAATAATCTGCTTCAAAGCCAGACATCTCGAATATCTGCTCGGCCTTTGAGTTCTCAGAAGAAAGCTTCACAAATTGTTGCAGCCAAGAAAGGTAACATTTCTGAACTTTTGGATGTGTCAAAGCATCCAGATGTCGCTGACATAGACGCTGATTTTGAAGATCCTCAACTATGCAGCCACTATGCTGCTGATATATATGACCACTTGCGTGTTGCTGAGCTGTCAAGAAGGCCTTATCCTAACTTCATGGAAACAGTACAGCAAGATATCACTCCAAGCATGCGTGCGATACTGGTTGATTGGCTTGTTGAGGTTTCTGAGGGATACAAATTGCAAGCAAACACTCTTTACCTCACTGTATATCTCATTGATTGGTTTCTCTCCAAAAATTGTATTGAAAGAGAGAGACTTCAGCTACTGGGCATTACTTGCATGCTAATTGCCACAAAATACGAAGAAATTAACGCCCCTCGTATTAAAGACTTCTGCTTCATCACGGATAACACATACACAAAAGAGGAGGTAGTAAAACTGGAATCTCTAGTGCTGAAGTCCTCTTCATATCAACTATTTGCTCCTACTACCAAAACTTTCCTCAGGAGGTTTCTTCGAGCGGCACAAGCTTCCTACAAGAGGCCTAGCATTGAGTTGGAGTACTTGGCAAATTACCTGGCTGAACTAACACTGATGAACTATGGTTTCTTAAACTTCCTTCCTTCTATGGTCGCTGCATCTTCCGTGTTTCTTGCACGATGGACATTAGATCAGTCAAGCCACCCATGGAATCCAACTCTTGAACACTATGCCTCTTACAAAGCATCAGATTTGAAAGCTACAGTTCTTGCATTACAAGATCTACAGCTGAATAGTAATGATGACTGCCCTTTAACCACCATCCGCAAGAAGTACACACAAGACAAGCTCAATTGTGTAGCAGCTTTATCTTCACCAAAACTGCTTGAAACATTGTTCTGA
Protein sequence

>Msa0644770

MRKSVTLKAGEVPSRLTRARAVALSTSGQLPPMKEVAPGTQNQKQPLRANSKRAVSDVTYLPRKKRAILQDVTNNCGENTNRSCLNPTEIQAKKRKVAKPAQPDVSNEVPSAAELPPFIADSKPVSSMEMRLRSSEDFRCLDDLEDNAPFRMSSNQCGTNNNLLQSQTSRISARPLSSQKKASQIVAAKKGNISELLDVSKHPDVADIDADFEDPQLCSHYAADIYDHLRVAELSRRPYPNFMETVQQDITPSMRAILVDWLVEVSEGYKLQANTLYLTVYLIDWFLSKNCIERERLQLLGITCMLIATKYEEINAPRIKDFCFITDNTYTKEEVVKLESLVLKSSSYQLFAPTTKTFLRRFLRAAQASYKRPSIELEYLANYLAELTLMNYGFLNFLPSMVAASSVFLARWTLDQSSHPWNPTLEHYASYKASDLKATVLALQDLQLNSNDDCPLTTIRKKYTQDKLNCVAALSSPKLLETLF*