AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0439920

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0439920 MtrunA17_Chr2g0332171 92.784 485 34 1 1 484 1 485 0.0 927
Msa0439920 MtrunA17_Chr2g0332181 65.631 483 107 6 3 484 5 429 0.0 593
Msa0439920 MtrunA17_Chr3g0138431 47.325 486 225 11 8 484 11 474 1.23e-127 379
Msa0439920 MtrunA17_Chr1g0148681 59.247 292 117 2 193 484 128 417 2.58e-114 343
Msa0439920 MtrunA17_Chr3g0125051 52.098 286 131 3 191 472 207 490 1.60e-97 303
Msa0439920 MtrunA17_Chr1g0152871 51.301 269 127 3 212 477 82 349 5.53e-92 284
Msa0439920 MtrunA17_Chr3g0125041 46.237 279 149 1 200 477 222 500 1.16e-86 275
Msa0439920 MtrunA17_Chr3g0134411 44.561 285 154 3 203 484 73 356 1.08e-74 239
Msa0439920 MtrunA17_Chr3g0134421 44.912 285 153 3 203 484 66 349 2.50e-74 238
Msa0439920 MtrunA17_Chr3g0134401 45.255 274 148 2 212 484 65 337 2.58e-72 232
Msa0439920 MtrunA17_Chr3g0134441 48.031 254 129 2 226 477 69 321 1.35e-68 222
Msa0439920 MtrunA17_Chr3g0134431 43.952 248 113 5 225 469 13 237 4.16e-55 185
Msa0439920 MtrunA17_Chr5g0406741 38.351 279 162 6 195 472 146 415 8.27e-53 184
Msa0439920 MtrunA17_Chr5g0441371 38.909 275 157 8 205 477 148 413 8.51e-53 183
Msa0439920 MtrunA17_Chr7g0255771 37.143 280 168 7 204 480 181 455 2.37e-51 181
Msa0439920 MtrunA17_Chr8g0370671 36.803 269 161 5 205 472 159 419 2.27e-48 172
Msa0439920 MtrunA17_Chr8g0357001 35.636 275 168 5 164 437 429 695 4.04e-45 168
Msa0439920 MtrunA17_Chr3g0102851 30.568 229 143 7 254 472 60 282 1.14e-23 100
Msa0439920 MtrunA17_Chr3g0103471 31.004 229 141 9 254 472 50 271 5.23e-21 92.8
Msa0439920 MtrunA17_Chr3g0102861 29.258 229 145 8 254 472 50 271 1.81e-20 91.3
Msa0439920 MtrunA17_Chr3g0102621 28.755 233 149 8 250 472 52 277 1.91e-20 91.3
Msa0439920 MtrunA17_Chr3g0102631 32.934 167 103 5 275 436 4 166 2.28e-18 83.6
Msa0439920 MtrunA17_Chr3g0102651 32.934 167 103 5 275 436 4 166 2.28e-18 83.6
Msa0439920 MtrunA17_Chr3g0102661 32.934 167 103 5 275 436 4 166 2.28e-18 83.6
Msa0439920 MtrunA17_Chr3g0102671 32.934 167 103 5 275 436 4 166 2.28e-18 83.6
Msa0439920 MtrunA17_Chr1g0161581 34.807 181 96 5 241 419 364 524 2.01e-16 82.0
Msa0439920 MtrunA17_Chr5g0418901 37.975 79 49 0 276 354 7 85 4.69e-14 67.8
Msa0439920 MtrunA17_Chr5g0398791 27.891 147 103 2 247 392 27 171 2.15e-11 62.8
Msa0439920 MtrunA17_Chr6g0462911 26.222 225 145 7 255 472 75 285 2.59e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0439920 AT1G80370.1 50.426 470 203 7 16 484 19 459 2.13e-148 432
Msa0439920 AT1G15570.1 49.688 481 205 12 8 484 3 450 6.79e-143 417
Msa0439920 AT5G11300.1 45.551 472 191 10 15 484 27 434 1.54e-128 380
Msa0439920 AT5G25380.4 45.975 472 196 7 15 484 27 441 1.09e-127 379
Msa0439920 AT5G25380.3 46.414 474 185 10 15 484 27 435 7.56e-126 374
Msa0439920 AT5G25380.1 46.414 474 185 10 15 484 27 435 7.56e-126 374
Msa0439920 AT5G25380.2 46.272 456 180 9 15 468 27 419 3.38e-122 363
Msa0439920 AT5G11300.2 44.499 409 162 9 15 421 27 372 1.74e-103 315
Msa0439920 AT1G44110.1 50.714 280 137 1 205 484 178 456 2.05e-96 299
Msa0439920 AT1G47210.2 49.291 282 139 3 206 484 87 367 7.16e-95 292
Msa0439920 AT5G43080.1 49.643 280 139 2 206 484 72 350 1.16e-94 291
Msa0439920 AT5G43080.2 50.000 280 133 3 206 484 72 345 4.74e-93 286
Msa0439920 AT1G77390.1 52.453 265 123 2 204 467 161 423 1.48e-92 288
Msa0439920 AT1G47230.1 48.905 274 136 3 214 484 88 360 2.07e-90 280
Msa0439920 AT1G47230.2 48.727 275 136 4 214 484 88 361 1.26e-88 276
Msa0439920 AT1G47220.1 47.232 271 140 2 206 474 41 310 7.19e-84 262
Msa0439920 AT5G06150.1 35.842 279 169 5 203 480 163 432 1.30e-48 173
Msa0439920 AT1G20610.1 36.364 286 169 9 195 477 149 424 1.70e-47 170
Msa0439920 AT1G76310.1 34.965 286 176 6 197 480 152 429 8.00e-46 165
Msa0439920 AT4G37490.1 36.620 284 166 8 205 482 148 423 1.42e-45 165
Msa0439920 AT3G11520.1 34.915 295 180 5 189 480 124 409 2.88e-45 163
Msa0439920 AT1G76310.2 38.397 237 137 5 197 431 152 381 2.91e-44 160
Msa0439920 AT3G11520.2 36.822 258 152 4 189 443 124 373 4.12e-44 160
Msa0439920 AT2G17620.1 37.847 288 168 6 195 480 144 422 1.04e-43 159
Msa0439920 AT2G26760.1 37.226 274 162 7 205 476 113 378 2.57e-43 157
Msa0439920 AT4G35620.1 37.546 269 159 5 205 472 155 415 4.61e-42 155
Msa0439920 AT1G76310.3 31.847 314 176 7 197 480 152 457 6.14e-40 150
Msa0439920 AT4G35620.2 39.914 233 132 4 205 436 155 380 1.86e-39 147
Msa0439920 AT1G16330.1 36.842 228 136 4 211 437 384 604 4.46e-38 147
Msa0439920 AT1G47210.1 53.774 106 47 1 206 309 87 192 9.00e-35 129
Msa0439920 AT1G76310.4 40.113 177 103 3 197 371 152 327 4.76e-34 131
Msa0439920 AT5G06150.2 36.257 171 106 2 199 368 159 327 1.67e-32 127
Msa0439920 AT1G20590.1 37.107 159 94 2 280 438 63 215 1.10e-27 112
Msa0439920 AT1G14750.2 40.000 165 89 5 250 410 214 372 1.58e-19 90.9
Msa0439920 AT1G14750.1 40.000 165 89 5 250 410 382 540 2.12e-19 91.7
Msa0439920 AT1G14750.3 40.000 165 89 5 250 410 382 540 3.21e-19 91.3
Msa0439920 AT1G14750.4 40.000 165 88 6 250 410 214 371 2.27e-18 87.4
Msa0439920 AT1G34460.2 25.389 193 119 4 175 366 224 392 6.47e-16 80.5
Msa0439920 AT1G34460.4 25.389 193 119 4 175 366 224 392 6.47e-16 80.5
Msa0439920 AT1G34460.7 25.773 194 120 4 175 366 224 395 6.65e-16 80.5
Msa0439920 AT1G34460.9 25.773 194 120 4 175 366 210 381 7.58e-16 80.1
Msa0439920 AT1G34460.6 25.773 194 120 4 175 366 224 395 8.30e-16 80.1
Msa0439920 AT1G34460.3 25.773 194 120 4 175 366 224 395 8.30e-16 80.1
Msa0439920 AT1G34460.8 25.773 194 120 4 175 366 224 395 8.30e-16 80.1
Msa0439920 AT1G34460.1 25.773 194 120 4 175 366 224 395 8.30e-16 80.1
Msa0439920 AT1G34460.5 25.773 194 120 4 175 366 224 395 8.56e-16 80.1

Find 122 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAGAAATGTTACCTTTCT+TGG 0.133114 3_3:-6336325 None:intergenic
ATCATAAATCATTACAAATT+AGG 0.165505 3_3:-6338548 None:intergenic
TCATAAATCATTACAAATTA+GGG 0.211389 3_3:-6338547 None:intergenic
CTTAAATCCAACTGAAATTC+AGG 0.218558 3_3:+6335734 Msa0439920:CDS
TTAGATCATCAGAAGATTTC+AGG 0.248087 3_3:+6336013 Msa0439920:CDS
TTCTTGCGGATGGCGGTTAA+AGG 0.248838 3_3:-6338267 None:intergenic
AACAATGTTTCAAGCAGTTT+TGG 0.255031 3_3:-6338489 None:intergenic
TGCTTCTGATTCTGAGTTCC+TGG 0.256521 3_3:-6335594 None:intergenic
AGGTAACATTTCTGAACTTT+TGG 0.265548 3_3:+6336332 Msa0439920:CDS
TAGAGACAGATAAATAATTT+TGG 0.273093 3_3:+6334595 Msa0439920:five_prime_UTR
CTTAAACTTCCTTCCTTCTA+TGG 0.274701 3_3:+6337993 Msa0439920:CDS
TTTCAGGTGCTTAGATGATT+TGG 0.298761 3_3:+6336029 Msa0439920:CDS
ATATACATTTAGTGACCTTA+TGG 0.307109 3_3:+6338674 Msa0439920:three_prime_UTR
TCCAAGCATGCGTGCGATAC+TGG 0.334324 3_3:+6336724 Msa0439920:CDS
TGTACTGTTTCCATGAAGTT+AGG 0.339878 3_3:-6336689 None:intergenic
CCAAGGTTGGATTCAAATCT+AGG 0.351121 3_3:+6338873 Msa0439920:three_prime_UTR
TGGTTGGAACTCATCCTAAA+AGG 0.354683 3_3:-6336063 None:intergenic
CAAATCTGATGCTTTGTAAG+AGG 0.356045 3_3:-6338190 None:intergenic
CCTGGTGCTACCTCCTTCAT+TGG 0.361989 3_3:-6335576 None:intergenic
ATCTGAAATCAAGACATTCT+AGG 0.364711 3_3:-6338746 None:intergenic
GAAACACCTGAGGAAAGTTT+TGG 0.367596 3_3:-6337674 None:intergenic
GCGTCTATGTCAGCGACATC+TGG 0.374347 3_3:-6336369 None:intergenic
TAGCATTGAGTTGGAGTACT+TGG 0.388611 3_3:+6337930 Msa0439920:CDS
GAAGATGCAGCGACCATAGA+AGG 0.394096 3_3:-6338006 None:intergenic
GAACTAACACTGATGAACTA+TGG 0.399485 3_3:+6337967 Msa0439920:CDS
TATACATTTAGTGACCTTAT+GGG 0.400631 3_3:+6338675 Msa0439920:three_prime_UTR
TCACTGTATATCTCATTGAT+TGG 0.404894 3_3:+6337074 Msa0439920:CDS
TGATTGACAGGTAGTAAAAC+TGG 0.408227 3_3:+6337603 Msa0439920:intron
AAGGCCTTATCCTAACTTCA+TGG 0.409072 3_3:+6336679 Msa0439920:CDS
GAACTTTGGATACTAAATCT+TGG 0.419346 3_3:-6335435 None:intergenic
TTATCTTCCTTCAATGGAGC+TGG 0.421163 3_3:+6334701 Msa0439920:five_prime_UTR
TTGAATCCAACCTTGGGATC+AGG 0.422138 3_3:-6338866 None:intergenic
CAAATTGTTGCAGCCAAGAA+AGG 0.441666 3_3:+6336312 Msa0439920:CDS
ACCAGTATCGCACGCATGCT+TGG 0.449229 3_3:-6336725 None:intergenic
GGAACCTCATTTGAAACATC+AGG 0.452258 3_3:-6335925 None:intergenic
GCTGTGGCTTTAAGTACATC+TGG 0.460174 3_3:+6335543 Msa0439920:CDS
AACTTCACCAGCTCCATTGA+AGG 0.460264 3_3:-6334708 None:intergenic
TCTTGCGGATGGCGGTTAAA+GGG 0.462277 3_3:-6338266 None:intergenic
CTCAAAACCGGTGAGTTCAA+TGG 0.463382 3_3:+6335981 Msa0439920:CDS
GTTTCCATGAAGTTAGGATA+AGG 0.469825 3_3:-6336683 None:intergenic
GGCGTTCCTGATCCCAAGGT+TGG 0.471437 3_3:+6338860 Msa0439920:three_prime_UTR
TTTGAAACATCAGGTTGAGC+AGG 0.471682 3_3:-6335916 None:intergenic
TATTATATTGGTAGTGGAAG+CGG 0.471935 3_3:+6334630 Msa0439920:five_prime_UTR
GAGCAGATATTCGAGATGTC+TGG 0.487371 3_3:-6336116 None:intergenic
AAACATTGTTCTGAATATGA+TGG 0.489279 3_3:+6338502 Msa0439920:exon
AAGAGTGTCACTCTGAAAGC+TGG 0.489355 3_3:+6335489 Msa0439920:CDS
CTAGATTTGAATCCAACCTT+GGG 0.490377 3_3:-6338872 None:intergenic
TAGAATGTCTTGATTTCAGA+TGG 0.493368 3_3:+6338748 Msa0439920:three_prime_UTR
CGCATTTCCATTGAACTCAC+CGG 0.493862 3_3:-6335988 None:intergenic
AAGAGAGAGACTTCAGCTGC+TGG 0.496709 3_3:+6337120 Msa0439920:CDS
CATATCTTCCTCATGAAATG+AGG 0.504019 3_3:+6335658 Msa0439920:CDS
GAGGCATACTGTTCAAGAGT+TGG 0.504331 3_3:-6338171 None:intergenic
CCTAGATTTGAATCCAACCT+TGG 0.507320 3_3:-6338873 None:intergenic
TCAACCTGATGTTTCAAATG+AGG 0.507462 3_3:+6335921 Msa0439920:CDS
TGCGTGCGATACTGGTTGAT+TGG 0.508489 3_3:+6336732 Msa0439920:CDS
TATGCAACCTGAATTTCAGT+TGG 0.513953 3_3:-6335741 None:intergenic
AATTCATGTTCAGGTTTCTG+AGG 0.514222 3_3:+6337021 Msa0439920:intron
GGTGCTACCTCCTTCATTGG+TGG 0.514272 3_3:-6335573 None:intergenic
GGAGTACTTGGCAAATTACC+TGG 0.519674 3_3:+6337942 Msa0439920:CDS
ATTGTTTGTGCCACTCTGGT+TGG 0.520011 3_3:-6336079 None:intergenic
ATACATTTAGTGACCTTATG+GGG 0.525197 3_3:+6338676 Msa0439920:three_prime_UTR
ATGTTTGCCAGGCTAAGAAA+AGG 0.526676 3_3:+6335881 Msa0439920:intron
AAGTTTGCAGCATAGATCTC+AGG 0.530359 3_3:+6334726 Msa0439920:five_prime_UTR
GATTATTGTTTGTGCCACTC+TGG 0.531908 3_3:-6336083 None:intergenic
AGCAAATAGTTGATATGAAG+AGG 0.537833 3_3:-6337644 None:intergenic
TGGACAGTTACCACCAATGA+AGG 0.540275 3_3:+6335563 Msa0439920:CDS
CGAGCACGAGTCAATCGACT+TGG 0.540414 3_3:-6335519 None:intergenic
GTTCATAGCTGACTCAAAAC+CGG 0.542331 3_3:+6335969 Msa0439920:CDS
TCATCAGTGTTAGTTCAGCC+AGG 0.544691 3_3:-6337960 None:intergenic
TTGTGTGTACTTCTTGCGGA+TGG 0.546451 3_3:-6338277 None:intergenic
ATTGCGGCGAAAATACAAAC+AGG 0.547104 3_3:+6335706 Msa0439920:CDS
TGCTGGCGTTCCTGATCCCA+AGG 0.548203 3_3:+6338856 Msa0439920:three_prime_UTR
GCAGAGGCCTAGCATTGAGT+TGG 0.548505 3_3:+6337921 Msa0439920:intron
CCAATGAAGGAGGTAGCACC+AGG 0.548598 3_3:+6335576 Msa0439920:CDS
CTACTACCAAAACTTTCCTC+AGG 0.552988 3_3:+6337668 Msa0439920:CDS
ATTCATGTTCAGGTTTCTGA+GGG 0.554200 3_3:+6337022 Msa0439920:intron
CTTCCGTGTTTCTTGCACGA+TGG 0.556981 3_3:+6338025 Msa0439920:CDS
GGTGGTCGCTCAGCAGCTGA+TGG 0.558126 3_3:-6335946 None:intergenic
TAGATCAGTCAAGCCACCCA+TGG 0.558247 3_3:+6338052 Msa0439920:CDS
ATCAAAATAACCTTAAATTG+TGG 0.561404 3_3:+6334466 Msa0439920:five_prime_UTR
GTCAGATGCAACTTAATCAA+AGG 0.561423 3_3:-6338897 None:intergenic
AAGTACTCCAACTCAATGCT+AGG 0.564248 3_3:-6337928 None:intergenic
GGATAACACATACGTAAAAG+AGG 0.568506 3_3:+6337306 Msa0439920:CDS
CATATATATCAGCAGCATAG+TGG 0.569484 3_3:-6336419 None:intergenic
TGTCTTGTGTGTACTTCTTG+CGG 0.570627 3_3:-6338281 None:intergenic
AGAGAGAGACTTCAGCTGCT+GGG 0.571332 3_3:+6337121 Msa0439920:CDS
ACTGGTTGATTGGCTTGTTG+AGG 0.576476 3_3:+6336742 Msa0439920:CDS
AGCGGCACAAGCTTCCTACA+AGG 0.577919 3_3:+6337806 Msa0439920:CDS
ATTGACTCGTGCTCGAGCTG+TGG 0.579601 3_3:+6335527 Msa0439920:CDS
TACATTTAGTGACCTTATGG+GGG 0.584746 3_3:+6338677 Msa0439920:three_prime_UTR
ATATCTTCCTCATGAAATGA+GGG 0.590347 3_3:+6335659 Msa0439920:CDS
GCATAGTGGCTGCATAGTTG+AGG 0.597253 3_3:-6336405 None:intergenic
TTGTAGGAGGTTTCTTCGAG+CGG 0.597311 3_3:+6337788 Msa0439920:intron
ATGGACAAATGATGAATGCA+AGG 0.598852 3_3:+6338521 Msa0439920:three_prime_UTR
TGACCACTTGCGTGTTGCTG+AGG 0.600917 3_3:+6336440 Msa0439920:CDS
TGAAGACTTCTGCTTCATCA+CGG 0.603644 3_3:+6337285 Msa0439920:CDS
TGTGTACTTCTTGCGGATGG+CGG 0.608917 3_3:-6338274 None:intergenic
ATGCAGCGACCATAGAAGGA+AGG 0.622018 3_3:-6338002 None:intergenic
AGATCAGTCAAGCCACCCAT+GGG 0.623354 3_3:+6338053 Msa0439920:CDS
AGACATCTCGAATATCTGCT+CGG 0.624360 3_3:+6336118 Msa0439920:CDS
AGAATTGCCCTCATTTCATG+AGG 0.626975 3_3:-6335666 None:intergenic
CAAGAAGTACACACAAGACA+AGG 0.627309 3_3:+6338284 Msa0439920:CDS
CGGTGAGTTCAATGGAAATG+CGG 0.632380 3_3:+6335989 Msa0439920:CDS
TGTCCATCGTGCAAGAAACA+CGG 0.632857 3_3:-6338028 None:intergenic
AGCAGAAGTCTTCAATACGA+GGG 0.635042 3_3:-6337276 None:intergenic
ACATTTAGTGACCTTATGGG+GGG 0.638605 3_3:+6338678 Msa0439920:three_prime_UTR
CAAGATGTCACTAACAATTG+CGG 0.646916 3_3:+6335690 Msa0439920:CDS
AAACCTCAGCAACACGCAAG+TGG 0.651996 3_3:-6336443 None:intergenic
CATAAATCATTACAAATTAG+GGG 0.653878 3_3:-6338546 None:intergenic
CCAGGCTAAGAAAAGGAAGG+TGG 0.660180 3_3:+6335888 Msa0439920:intron
AAGCAGAAGTCTTCAATACG+AGG 0.666457 3_3:-6337277 None:intergenic
GCAGAAGTCTTCAATACGAG+GGG 0.667503 3_3:-6337275 None:intergenic
TTTGAGTCAGCTATGAACGG+TGG 0.674912 3_3:-6335964 None:intergenic
AGGATGAGTTCCAACCAGAG+TGG 0.678417 3_3:+6336069 Msa0439920:CDS
GAAAAGAACTAACCCATGGG+TGG 0.679908 3_3:-6338065 None:intergenic
TAACACATACGTAAAAGAGG+AGG 0.680647 3_3:+6337309 Msa0439920:CDS
TTGCCAGGCTAAGAAAAGGA+AGG 0.684325 3_3:+6335885 Msa0439920:intron
AGGAACGCCAGCATGATACA+CGG 0.686680 3_3:-6338846 None:intergenic
GATGTGTACTGTGTCACAGT+AGG 0.688059 3_3:+6338571 Msa0439920:three_prime_UTR
ACAGTTACCACCAATGAAGG+AGG 0.688615 3_3:+6335566 Msa0439920:CDS
TGGACAAATGATGAATGCAA+GGG 0.702925 3_3:+6338522 Msa0439920:three_prime_UTR
AATCAATGAGATATACAGTG+AGG 0.713603 3_3:-6337072 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAAAATTAAATATAAAA+GGG - chr3_3:6335298-6335317 None:intergenic 0.0%
!! AATTAAAAATTAAATATAAA+AGG - chr3_3:6335299-6335318 None:intergenic 0.0%
!!! TAGTATTTCTTTTATTATAT+TGG + chr3_3:6334618-6334637 Msa0439920:five_prime_UTR 10.0%
!!! TTTGATACATATTTTAAAAT+AGG + chr3_3:6334884-6334903 Msa0439920:intron 10.0%
!!! TTGTTAAATTTTATTGTTAT+TGG + chr3_3:6335323-6335342 Msa0439920:intron 10.0%
!!! ATATTTTAAAATAGGAAACT+TGG + chr3_3:6334892-6334911 Msa0439920:intron 15.0%
!!! TGTCTTATTGTTATTATTTT+TGG + chr3_3:6335010-6335029 Msa0439920:intron 15.0%
!! TCATAAATCATTACAAATTA+GGG - chr3_3:6338550-6338569 None:intergenic 15.0%
!! ATCATAAATCATTACAAATT+AGG - chr3_3:6338551-6338570 None:intergenic 15.0%
!! ATCAAAATAACCTTAAATTG+TGG + chr3_3:6334466-6334485 Msa0439920:five_prime_UTR 20.0%
!!! TAGAGACAGATAAATAATTT+TGG + chr3_3:6334595-6334614 Msa0439920:five_prime_UTR 20.0%
!!! TTCTTTTATTATATTGGTAG+TGG + chr3_3:6334624-6334643 Msa0439920:five_prime_UTR 20.0%
!!! GTTTTTTATTAACTTCATTC+CGG + chr3_3:6334772-6334791 Msa0439920:intron 20.0%
!!! TTTTTTATTAACTTCATTCC+GGG + chr3_3:6334773-6334792 Msa0439920:intron 20.0%
!! TTTAAACACAGAAAATGTAA+AGG - chr3_3:6335351-6335370 None:intergenic 20.0%
!!! ATAAATGACTTTTAGTTAGT+TGG + chr3_3:6336245-6336264 Msa0439920:intron 20.0%
!! TTTATAAAATGCATGCTAAT+CGG + chr3_3:6336530-6336549 Msa0439920:intron 20.0%
!! AACTAATATAATACACATCT+AGG - chr3_3:6336963-6336982 None:intergenic 20.0%
!! TAGTCATTAGATTTCATTTA+GGG + chr3_3:6337483-6337502 Msa0439920:intron 20.0%
!! TTTCTTTGAGTAATTTCATA+TGG - chr3_3:6338106-6338125 None:intergenic 20.0%
!! AAAAACAGAAGTAGAAATTA+AGG - chr3_3:6338135-6338154 None:intergenic 20.0%
!! GTTATGTTACAAAGTAAATA+GGG - chr3_3:6338393-6338412 None:intergenic 20.0%
!! AGTTATGTTACAAAGTAAAT+AGG - chr3_3:6338394-6338413 None:intergenic 20.0%
!! CATAAATCATTACAAATTAG+GGG - chr3_3:6338549-6338568 None:intergenic 20.0%
!! TTTTCATTAGCCACAATTTA+AGG - chr3_3:6334479-6334498 None:intergenic 25.0%
! TAATGAAAAAAGTTAGGGTA+AGG + chr3_3:6334490-6334509 Msa0439920:five_prime_UTR 25.0%
! AATGAAAAAAGTTAGGGTAA+GGG + chr3_3:6334491-6334510 Msa0439920:five_prime_UTR 25.0%
!!! TTATTTTGCTAATTTTGTGC+AGG - chr3_3:6334551-6334570 None:intergenic 25.0%
! TGAGCTTAAAAGAGAAAAAA+AGG + chr3_3:6334835-6334854 Msa0439920:intron 25.0%
! GAGCTTAAAAGAGAAAAAAA+GGG + chr3_3:6334836-6334855 Msa0439920:intron 25.0%
! TCATTTCAGCAACATAAAAA+TGG - chr3_3:6334971-6334990 None:intergenic 25.0%
! AATAAGACAAACAACATACA+TGG - chr3_3:6334999-6335018 None:intergenic 25.0%
!! AATGTTTGGATGTCAAATTT+TGG - chr3_3:6335051-6335070 None:intergenic 25.0%
!!! ATCCAAACATTTTTGTTTCA+TGG + chr3_3:6335060-6335079 Msa0439920:intron 25.0%
! AACCATGAAACAAAAATGTT+TGG - chr3_3:6335065-6335084 None:intergenic 25.0%
!!! CATTTTTGTTTCATGGTTTA+TGG + chr3_3:6335067-6335086 Msa0439920:intron 25.0%
! TAAAATTGATGAGTGCATTA+AGG + chr3_3:6335184-6335203 Msa0439920:intron 25.0%
! TGCAGATAGTAACATAAAAA+TGG + chr3_3:6335272-6335291 Msa0439920:intron 25.0%
! CCAAAAATTCAAAAGAACTT+TGG - chr3_3:6335452-6335471 None:intergenic 25.0%
!! CCAAAGTTCTTTTGAATTTT+TGG + chr3_3:6335449-6335468 Msa0439920:five_prime_UTR 25.0%
! TGCATATATCCAATATCAAA+TGG + chr3_3:6335758-6335777 Msa0439920:intron 25.0%
! AAACAAGAACCATTTGATAT+TGG - chr3_3:6335770-6335789 None:intergenic 25.0%
! TTTGTCTTGAAATGTATTGA+AGG + chr3_3:6335789-6335808 Msa0439920:intron 25.0%
!! TCTTGAACAGATTTCTTTTA+TGG - chr3_3:6336215-6336234 None:intergenic 25.0%
!!! AACTTAGTTGTGGTTATTTT+TGG + chr3_3:6336278-6336297 Msa0439920:intron 25.0%
! ATAAAGTTCATAACTATGTG+CGG - chr3_3:6336515-6336534 None:intergenic 25.0%
! AACAACTTACTTAGCATAAA+AGG - chr3_3:6336628-6336647 None:intergenic 25.0%
!! CTCTCTTTCAATACAATTTT+TGG - chr3_3:6337107-6337126 None:intergenic 25.0%
! ATGAGCATTACTAAACATAA+TGG - chr3_3:6337209-6337228 None:intergenic 25.0%
!! TGATTAATACTAAAGTACCA+AGG + chr3_3:6337372-6337391 Msa0439920:intron 25.0%
! AAATGAAATCTAATGACTAG+AGG - chr3_3:6337482-6337501 None:intergenic 25.0%
! CTAGTCATTAGATTTCATTT+AGG + chr3_3:6337482-6337501 Msa0439920:intron 25.0%
!! TTTCATTTAGGGTCTTAAAA+AGG + chr3_3:6337494-6337513 Msa0439920:intron 25.0%
!! TTTTTGTAAAGACTACTGAA+CGG - chr3_3:6337718-6337737 None:intergenic 25.0%
! CAATTATCTTAGTACATTCT+TGG + chr3_3:6337763-6337782 Msa0439920:intron 25.0%
! TTTGAGTAATTTCATATGGA+AGG - chr3_3:6338102-6338121 None:intergenic 25.0%
!! AAACATTGTTCTGAATATGA+TGG + chr3_3:6338502-6338521 Msa0439920:exon 25.0%
! ATATACATTTAGTGACCTTA+TGG + chr3_3:6338674-6338693 Msa0439920:three_prime_UTR 25.0%
! TATACATTTAGTGACCTTAT+GGG + chr3_3:6338675-6338694 Msa0439920:three_prime_UTR 25.0%
! ACTTCTAGCAAAATGAAAAA+AGG + chr3_3:6338921-6338940 Msa0439920:three_prime_UTR 25.0%
! CTTCTAGCAAAATGAAAAAA+GGG + chr3_3:6338922-6338941 Msa0439920:three_prime_UTR 25.0%
TGTGGCTAATGAAAAAAGTT+AGG + chr3_3:6334484-6334503 Msa0439920:five_prime_UTR 30.0%
GTGGCTAATGAAAAAAGTTA+GGG + chr3_3:6334485-6334504 Msa0439920:five_prime_UTR 30.0%
CGTGACTAATGAAAAAAGTT+AGG + chr3_3:6334571-6334590 Msa0439920:five_prime_UTR 30.0%
!! TATTATATTGGTAGTGGAAG+CGG + chr3_3:6334630-6334649 Msa0439920:five_prime_UTR 30.0%
! GACTTTTTATCTTCCTTCAA+TGG + chr3_3:6334695-6334714 Msa0439920:five_prime_UTR 30.0%
! TTTTCTGGGTTATTCTGATT+TGG + chr3_3:6334799-6334818 Msa0439920:intron 30.0%
TTTCTGGGTTATTCTGATTT+GGG + chr3_3:6334800-6334819 Msa0439920:intron 30.0%
! GAAACTTGGACAACATTTTA+AGG + chr3_3:6334906-6334925 Msa0439920:intron 30.0%
TTCTTTGATGTTACTGTAGT+TGG + chr3_3:6335216-6335235 Msa0439920:intron 30.0%
TCTTTGATGTTACTGTAGTT+GGG + chr3_3:6335217-6335236 Msa0439920:intron 30.0%
GAACTTTGGATACTAAATCT+TGG - chr3_3:6335438-6335457 None:intergenic 30.0%
!! TCTTTTTGAATTGGCTCTTA+GGG - chr3_3:6335622-6335641 None:intergenic 30.0%
! TGAAACTGCTCTTTTTGAAT+TGG - chr3_3:6335631-6335650 None:intergenic 30.0%
ATATCTTCCTCATGAAATGA+GGG + chr3_3:6335659-6335678 Msa0439920:CDS 30.0%
CTTAAATCCAACTGAAATTC+AGG + chr3_3:6335734-6335753 Msa0439920:CDS 30.0%
AAGGATTCATATCTCAATAG+TGG + chr3_3:6335808-6335827 Msa0439920:intron 30.0%
!! TTCATATCTCAATAGTGGAT+AGG + chr3_3:6335813-6335832 Msa0439920:intron 30.0%
TTAGATCATCAGAAGATTTC+AGG + chr3_3:6336013-6336032 Msa0439920:CDS 30.0%
ACAATGTACTACACAAATAG+AGG - chr3_3:6336171-6336190 None:intergenic 30.0%
TTCAGAAATGTTACCTTTCT+TGG - chr3_3:6336328-6336347 None:intergenic 30.0%
! AGGTAACATTTCTGAACTTT+TGG + chr3_3:6336332-6336351 Msa0439920:CDS 30.0%
TCATATTGTTCAGCTAAACT+TGG - chr3_3:6336820-6336839 None:intergenic 30.0%
TGAACATGAATTCAACACAT+GGG - chr3_3:6337013-6337032 None:intergenic 30.0%
AATCAATGAGATATACAGTG+AGG - chr3_3:6337075-6337094 None:intergenic 30.0%
TCACTGTATATCTCATTGAT+TGG + chr3_3:6337074-6337093 Msa0439920:CDS 30.0%
! TAAACATAATGGAACACAAG+AGG - chr3_3:6337198-6337217 None:intergenic 30.0%
CTGAAAGTAGCAATTTCATA+TGG + chr3_3:6337411-6337430 Msa0439920:intron 30.0%
!!! TTTGCTGTTTTGTAAGTATG+TGG + chr3_3:6337542-6337561 Msa0439920:intron 30.0%
!! TACTCAATGTATTGATTGAC+AGG + chr3_3:6337591-6337610 Msa0439920:intron 30.0%
! AGCAAATAGTTGATATGAAG+AGG - chr3_3:6337647-6337666 None:intergenic 30.0%
TGTACTAAGATAATTGCAAG+AGG - chr3_3:6337759-6337778 None:intergenic 30.0%
!!! TAGTACATTCTTGGTTTTGT+AGG + chr3_3:6337772-6337791 Msa0439920:intron 30.0%
AGTAATGCTCAATACAAATC+TGG - chr3_3:6337875-6337894 None:intergenic 30.0%
!! CTCTGCATGTTTTATTCAAT+TGG - chr3_3:6337907-6337926 None:intergenic 30.0%
CAATTGAATAAAACATGCAG+AGG + chr3_3:6337905-6337924 Msa0439920:intron 30.0%
AAAGAAAAGAACTAACCCAT+GGG - chr3_3:6338071-6338090 None:intergenic 30.0%
! AACAATGTTTCAAGCAGTTT+TGG - chr3_3:6338492-6338511 None:intergenic 30.0%
ATACATTTAGTGACCTTATG+GGG + chr3_3:6338676-6338695 Msa0439920:three_prime_UTR 30.0%
! ATCTGAAATCAAGACATTCT+AGG - chr3_3:6338749-6338768 None:intergenic 30.0%
TAGAATGTCTTGATTTCAGA+TGG + chr3_3:6338748-6338767 Msa0439920:three_prime_UTR 30.0%
CAAAATGAAAAAAGGGATTG+AGG + chr3_3:6338929-6338948 Msa0439920:three_prime_UTR 30.0%
TTTATTAACTTCATTCCGGG+TGG + chr3_3:6334776-6334795 Msa0439920:intron 35.0%
TCTGTTGTTCTATGTGCATT+TGG + chr3_3:6335115-6335134 Msa0439920:intron 35.0%
TCTATGTGCATTTGGAAACA+TGG + chr3_3:6335123-6335142 Msa0439920:intron 35.0%
TGTGATTGCTTCAAACATCA+AGG + chr3_3:6335154-6335173 Msa0439920:intron 35.0%
! TTTTGGATCTTGTAGAGATG+AGG + chr3_3:6335466-6335485 Msa0439920:exon 35.0%
!! CTTTTTGAATTGGCTCTTAG+GGG - chr3_3:6335621-6335640 None:intergenic 35.0%
!! CTCTTTTTGAATTGGCTCTT+AGG - chr3_3:6335623-6335642 None:intergenic 35.0%
CATATCTTCCTCATGAAATG+AGG + chr3_3:6335658-6335677 Msa0439920:CDS 35.0%
CAAGATGTCACTAACAATTG+CGG + chr3_3:6335690-6335709 Msa0439920:CDS 35.0%
TATGCAACCTGAATTTCAGT+TGG - chr3_3:6335744-6335763 None:intergenic 35.0%
!!! CTGTTACTTTTATGTTTGCC+AGG + chr3_3:6335870-6335889 Msa0439920:intron 35.0%
TCAACCTGATGTTTCAAATG+AGG + chr3_3:6335921-6335940 Msa0439920:CDS 35.0%
! TTTCAGGTGCTTAGATGATT+TGG + chr3_3:6336029-6336048 Msa0439920:CDS 35.0%
!!! CTTTTGAGTTCTCAGAAGAA+AGG + chr3_3:6336141-6336160 Msa0439920:CDS 35.0%
!!! ACTTTTAGTTAGTTGGTGAC+TGG + chr3_3:6336252-6336271 Msa0439920:intron 35.0%
CATATATATCAGCAGCATAG+TGG - chr3_3:6336422-6336441 None:intergenic 35.0%
TATGTGCGGTAAAGCAATAT+TGG - chr3_3:6336501-6336520 None:intergenic 35.0%
!!! CATTTTTTCAGCTGTCAAGA+AGG + chr3_3:6336660-6336679 Msa0439920:intron 35.0%
GTTTCCATGAAGTTAGGATA+AGG - chr3_3:6336686-6336705 None:intergenic 35.0%
TGTACTGTTTCCATGAAGTT+AGG - chr3_3:6336692-6336711 None:intergenic 35.0%
CTGAACATGAATTCAACACA+TGG - chr3_3:6337014-6337033 None:intergenic 35.0%
CATGTGTTGAATTCATGTTC+AGG + chr3_3:6337012-6337031 Msa0439920:intron 35.0%
! AATTCATGTTCAGGTTTCTG+AGG + chr3_3:6337021-6337040 Msa0439920:intron 35.0%
! ATTCATGTTCAGGTTTCTGA+GGG + chr3_3:6337022-6337041 Msa0439920:intron 35.0%
!! CATTAAGTTGAGAACTTACG+TGG - chr3_3:6337167-6337186 None:intergenic 35.0%
CACGTAAGTTCTCAACTTAA+TGG + chr3_3:6337165-6337184 Msa0439920:intron 35.0%
GTTCTCAACTTAATGGAAGT+TGG + chr3_3:6337172-6337191 Msa0439920:intron 35.0%
GGATAACACATACGTAAAAG+AGG + chr3_3:6337306-6337325 Msa0439920:CDS 35.0%
TAACACATACGTAAAAGAGG+AGG + chr3_3:6337309-6337328 Msa0439920:CDS 35.0%
!! GTTTTGATGTATGCTTTCCT+TGG - chr3_3:6337392-6337411 None:intergenic 35.0%
TGATTGACAGGTAGTAAAAC+TGG + chr3_3:6337603-6337622 Msa0439920:intron 35.0%
!!! TACATTCTTGGTTTTGTAGG+AGG + chr3_3:6337775-6337794 Msa0439920:intron 35.0%
! GATCGATCTTTTTACCTTGT+AGG - chr3_3:6337823-6337842 None:intergenic 35.0%
ACAAGGTAAAAAGATCGATC+TGG + chr3_3:6337823-6337842 Msa0439920:intron 35.0%
CAAGGTAAAAAGATCGATCT+GGG + chr3_3:6337824-6337843 Msa0439920:intron 35.0%
GAACTAACACTGATGAACTA+TGG + chr3_3:6337967-6337986 Msa0439920:CDS 35.0%
CTTAAACTTCCTTCCTTCTA+TGG + chr3_3:6337993-6338012 Msa0439920:CDS 35.0%
GAAAGAAAAGAACTAACCCA+TGG - chr3_3:6338072-6338091 None:intergenic 35.0%
CAAATCTGATGCTTTGTAAG+AGG - chr3_3:6338193-6338212 None:intergenic 35.0%
ATGGACAAATGATGAATGCA+AGG + chr3_3:6338521-6338540 Msa0439920:three_prime_UTR 35.0%
TGGACAAATGATGAATGCAA+GGG + chr3_3:6338522-6338541 Msa0439920:three_prime_UTR 35.0%
TACATTTAGTGACCTTATGG+GGG + chr3_3:6338677-6338696 Msa0439920:three_prime_UTR 35.0%
! TTTTTAACCGTGTATCATGC+TGG + chr3_3:6338839-6338858 Msa0439920:three_prime_UTR 35.0%
CTAGATTTGAATCCAACCTT+GGG - chr3_3:6338875-6338894 None:intergenic 35.0%
GTCAGATGCAACTTAATCAA+AGG - chr3_3:6338900-6338919 None:intergenic 35.0%
TTATCTTCCTTCAATGGAGC+TGG + chr3_3:6334701-6334720 Msa0439920:five_prime_UTR 40.0%
AAGTTTGCAGCATAGATCTC+AGG + chr3_3:6334726-6334745 Msa0439920:five_prime_UTR 40.0%
AGAATTGCCCTCATTTCATG+AGG - chr3_3:6335669-6335688 None:intergenic 40.0%
ATTGCGGCGAAAATACAAAC+AGG + chr3_3:6335706-6335725 Msa0439920:CDS 40.0%
ATGTTTGCCAGGCTAAGAAA+AGG + chr3_3:6335881-6335900 Msa0439920:intron 40.0%
!! TTTGAAACATCAGGTTGAGC+AGG - chr3_3:6335919-6335938 None:intergenic 40.0%
! GGAACCTCATTTGAAACATC+AGG - chr3_3:6335928-6335947 None:intergenic 40.0%
!!! GGTTTTGAGTCAGCTATGAA+CGG - chr3_3:6335970-6335989 None:intergenic 40.0%
! GTTCATAGCTGACTCAAAAC+CGG + chr3_3:6335969-6335988 Msa0439920:CDS 40.0%
! TGGAAGACAATGCACCTTTT+AGG + chr3_3:6336049-6336068 Msa0439920:CDS 40.0%
TGGTTGGAACTCATCCTAAA+AGG - chr3_3:6336066-6336085 None:intergenic 40.0%
! GATTATTGTTTGTGCCACTC+TGG - chr3_3:6336086-6336105 None:intergenic 40.0%
AGACATCTCGAATATCTGCT+CGG + chr3_3:6336118-6336137 Msa0439920:CDS 40.0%
TGACTGGTGTAACTTAGTTG+TGG + chr3_3:6336268-6336287 Msa0439920:intron 40.0%
CAAATTGTTGCAGCCAAGAA+AGG + chr3_3:6336312-6336331 Msa0439920:CDS 40.0%
TGGTAGAGACAATAGTGACA+GGG - chr3_3:6336481-6336500 None:intergenic 40.0%
TTGGTAGAGACAATAGTGAC+AGG - chr3_3:6336482-6336501 None:intergenic 40.0%
! AAGGCCTTATCCTAACTTCA+TGG + chr3_3:6336679-6336698 Msa0439920:CDS 40.0%
AGCAGAAGTCTTCAATACGA+GGG - chr3_3:6337279-6337298 None:intergenic 40.0%
AAGCAGAAGTCTTCAATACG+AGG - chr3_3:6337280-6337299 None:intergenic 40.0%
TGAAGACTTCTGCTTCATCA+CGG + chr3_3:6337285-6337304 Msa0439920:CDS 40.0%
!! CTGAGGAAAGTTTTGGTAGT+AGG - chr3_3:6337670-6337689 None:intergenic 40.0%
CTACTACCAAAACTTTCCTC+AGG + chr3_3:6337668-6337687 Msa0439920:CDS 40.0%
! GAAACACCTGAGGAAAGTTT+TGG - chr3_3:6337677-6337696 None:intergenic 40.0%
AAGTTGACAAGAAACACCTG+AGG - chr3_3:6337687-6337706 None:intergenic 40.0%
AAGTACTCCAACTCAATGCT+AGG - chr3_3:6337931-6337950 None:intergenic 40.0%
!! TAGCATTGAGTTGGAGTACT+TGG + chr3_3:6337930-6337949 Msa0439920:CDS 40.0%
TGTCTTGTGTGTACTTCTTG+CGG - chr3_3:6338284-6338303 None:intergenic 40.0%
! CAAGAAGTACACACAAGACA+AGG + chr3_3:6338284-6338303 Msa0439920:CDS 40.0%
ACAAGGTATGTCAGAAAGAG+AGG + chr3_3:6338301-6338320 Msa0439920:intron 40.0%
ACATTTAGTGACCTTATGGG+GGG + chr3_3:6338678-6338697 Msa0439920:three_prime_UTR 40.0%
CCTAGATTTGAATCCAACCT+TGG - chr3_3:6338876-6338895 None:intergenic 40.0%
CCAAGGTTGGATTCAAATCT+AGG + chr3_3:6338873-6338892 Msa0439920:three_prime_UTR 40.0%
AACTTCACCAGCTCCATTGA+AGG - chr3_3:6334711-6334730 None:intergenic 45.0%
! TTCATTCCGGGTGGTTTTCT+GGG + chr3_3:6334785-6334804 Msa0439920:intron 45.0%
GAATAACCCAGAAAACCACC+CGG - chr3_3:6334794-6334813 None:intergenic 45.0%
!! AAGAGTGTCACTCTGAAAGC+TGG + chr3_3:6335489-6335508 Msa0439920:CDS 45.0%
!! GCTGTGGCTTTAAGTACATC+TGG + chr3_3:6335543-6335562 Msa0439920:CDS 45.0%
TGGACAGTTACCACCAATGA+AGG + chr3_3:6335563-6335582 Msa0439920:CDS 45.0%
ACAGTTACCACCAATGAAGG+AGG + chr3_3:6335566-6335585 Msa0439920:CDS 45.0%
TGCTTCTGATTCTGAGTTCC+TGG - chr3_3:6335597-6335616 None:intergenic 45.0%
TTGCCAGGCTAAGAAAAGGA+AGG + chr3_3:6335885-6335904 Msa0439920:intron 45.0%
TTTGAGTCAGCTATGAACGG+TGG - chr3_3:6335967-6335986 None:intergenic 45.0%
CTCAAAACCGGTGAGTTCAA+TGG + chr3_3:6335981-6336000 Msa0439920:CDS 45.0%
CGCATTTCCATTGAACTCAC+CGG - chr3_3:6335991-6336010 None:intergenic 45.0%
CGGTGAGTTCAATGGAAATG+CGG + chr3_3:6335989-6336008 Msa0439920:CDS 45.0%
! ATTGTTTGTGCCACTCTGGT+TGG - chr3_3:6336082-6336101 None:intergenic 45.0%
GAGCAGATATTCGAGATGTC+TGG - chr3_3:6336119-6336138 None:intergenic 45.0%
!! ACTGGTTGATTGGCTTGTTG+AGG + chr3_3:6336742-6336761 Msa0439920:CDS 45.0%
GCAGAAGTCTTCAATACGAG+GGG - chr3_3:6337278-6337297 None:intergenic 45.0%
TTGTAGGAGGTTTCTTCGAG+CGG + chr3_3:6337788-6337807 Msa0439920:intron 45.0%
! GGAGTACTTGGCAAATTACC+TGG + chr3_3:6337942-6337961 Msa0439920:CDS 45.0%
TCATCAGTGTTAGTTCAGCC+AGG - chr3_3:6337963-6337982 None:intergenic 45.0%
TGTCCATCGTGCAAGAAACA+CGG - chr3_3:6338031-6338050 None:intergenic 45.0%
GAAAAGAACTAACCCATGGG+TGG - chr3_3:6338068-6338087 None:intergenic 45.0%
GAGGCATACTGTTCAAGAGT+TGG - chr3_3:6338174-6338193 None:intergenic 45.0%
TTGTGTGTACTTCTTGCGGA+TGG - chr3_3:6338280-6338299 None:intergenic 45.0%
GATGTGTACTGTGTCACAGT+AGG + chr3_3:6338571-6338590 Msa0439920:three_prime_UTR 45.0%
ATAAGCAAGAACCCCCCATA+AGG - chr3_3:6338692-6338711 None:intergenic 45.0%
TTGAATCCAACCTTGGGATC+AGG - chr3_3:6338869-6338888 None:intergenic 45.0%
!!! TGTTTTTTTTTTTTTTTTTT+TGG + chr3_3:6334941-6334960 Msa0439920:intron 5.0%
! CTTCATTCCGGGTGGTTTTC+TGG + chr3_3:6334784-6334803 Msa0439920:intron 50.0%
! CCACCTTCCTTTTCTTAGCC+TGG - chr3_3:6335891-6335910 None:intergenic 50.0%
CCAGGCTAAGAAAAGGAAGG+TGG + chr3_3:6335888-6335907 Msa0439920:intron 50.0%
AGGATGAGTTCCAACCAGAG+TGG + chr3_3:6336069-6336088 Msa0439920:CDS 50.0%
GCATAGTGGCTGCATAGTTG+AGG - chr3_3:6336408-6336427 None:intergenic 50.0%
AAACCTCAGCAACACGCAAG+TGG - chr3_3:6336446-6336465 None:intergenic 50.0%
! TGCGTGCGATACTGGTTGAT+TGG + chr3_3:6336732-6336751 Msa0439920:CDS 50.0%
AAGAGAGAGACTTCAGCTGC+TGG + chr3_3:6337120-6337139 Msa0439920:CDS 50.0%
AGAGAGAGACTTCAGCTGCT+GGG + chr3_3:6337121-6337140 Msa0439920:CDS 50.0%
ATGCAGCGACCATAGAAGGA+AGG - chr3_3:6338005-6338024 None:intergenic 50.0%
GAAGATGCAGCGACCATAGA+AGG - chr3_3:6338009-6338028 None:intergenic 50.0%
CTTCCGTGTTTCTTGCACGA+TGG + chr3_3:6338025-6338044 Msa0439920:CDS 50.0%
TAGATCAGTCAAGCCACCCA+TGG + chr3_3:6338052-6338071 Msa0439920:CDS 50.0%
AGATCAGTCAAGCCACCCAT+GGG + chr3_3:6338053-6338072 Msa0439920:CDS 50.0%
! TCTTGCGGATGGCGGTTAAA+GGG - chr3_3:6338269-6338288 None:intergenic 50.0%
! TTCTTGCGGATGGCGGTTAA+AGG - chr3_3:6338270-6338289 None:intergenic 50.0%
TGTGTACTTCTTGCGGATGG+CGG - chr3_3:6338277-6338296 None:intergenic 50.0%
AGGAACGCCAGCATGATACA+CGG - chr3_3:6338849-6338868 None:intergenic 50.0%
CGAGCACGAGTCAATCGACT+TGG - chr3_3:6335522-6335541 None:intergenic 55.0%
!! ATTGACTCGTGCTCGAGCTG+TGG + chr3_3:6335527-6335546 Msa0439920:CDS 55.0%
! GGTGCTACCTCCTTCATTGG+TGG - chr3_3:6335576-6335595 None:intergenic 55.0%
!! CCTGGTGCTACCTCCTTCAT+TGG - chr3_3:6335579-6335598 None:intergenic 55.0%
CCAATGAAGGAGGTAGCACC+AGG + chr3_3:6335576-6335595 Msa0439920:CDS 55.0%
GCGTCTATGTCAGCGACATC+TGG - chr3_3:6336372-6336391 None:intergenic 55.0%
! TGACCACTTGCGTGTTGCTG+AGG + chr3_3:6336440-6336459 Msa0439920:CDS 55.0%
TCCAAGCATGCGTGCGATAC+TGG + chr3_3:6336724-6336743 Msa0439920:CDS 55.0%
ACCAGTATCGCACGCATGCT+TGG - chr3_3:6336728-6336747 None:intergenic 55.0%
AGCGGCACAAGCTTCCTACA+AGG + chr3_3:6337806-6337825 Msa0439920:CDS 55.0%
! GCAGAGGCCTAGCATTGAGT+TGG + chr3_3:6337921-6337940 Msa0439920:intron 55.0%
TGCTGGCGTTCCTGATCCCA+AGG + chr3_3:6338856-6338875 Msa0439920:three_prime_UTR 60.0%
GGCGTTCCTGATCCCAAGGT+TGG + chr3_3:6338860-6338879 Msa0439920:three_prime_UTR 60.0%
GGTGGTCGCTCAGCAGCTGA+TGG - chr3_3:6335949-6335968 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 6334458 6338968 6334458 ID=Msa0439920;Name=Msa0439920
chr3_3 mRNA 6334458 6338968 6334458 ID=Msa0439920-mRNA-1;Parent=Msa0439920;Name=Msa0439920-mRNA-1;_AED=0.13;_eAED=0.13;_QI=368|1|1|1|0.90|0.83|12|453|484
chr3_3 exon 6334458 6334767 6334458 ID=Msa0439920-mRNA-1:exon:1307;Parent=Msa0439920-mRNA-1
chr3_3 exon 6335425 6335755 6335425 ID=Msa0439920-mRNA-1:exon:1308;Parent=Msa0439920-mRNA-1
chr3_3 exon 6335892 6336162 6335892 ID=Msa0439920-mRNA-1:exon:1309;Parent=Msa0439920-mRNA-1
chr3_3 exon 6336307 6336461 6336307 ID=Msa0439920-mRNA-1:exon:1310;Parent=Msa0439920-mRNA-1
chr3_3 exon 6336671 6336763 6336671 ID=Msa0439920-mRNA-1:exon:1311;Parent=Msa0439920-mRNA-1
chr3_3 exon 6337034 6337167 6337034 ID=Msa0439920-mRNA-1:exon:1312;Parent=Msa0439920-mRNA-1
chr3_3 exon 6337255 6337330 6337255 ID=Msa0439920-mRNA-1:exon:1313;Parent=Msa0439920-mRNA-1
chr3_3 exon 6337613 6337689 6337613 ID=Msa0439920-mRNA-1:exon:1314;Parent=Msa0439920-mRNA-1
chr3_3 exon 6337794 6337827 6337794 ID=Msa0439920-mRNA-1:exon:1315;Parent=Msa0439920-mRNA-1
chr3_3 exon 6337925 6338074 6337925 ID=Msa0439920-mRNA-1:exon:1316;Parent=Msa0439920-mRNA-1
chr3_3 exon 6338168 6338305 6338168 ID=Msa0439920-mRNA-1:exon:1317;Parent=Msa0439920-mRNA-1
chr3_3 exon 6338462 6338968 6338462 ID=Msa0439920-mRNA-1:exon:1318;Parent=Msa0439920-mRNA-1
chr3_3 five_prime_UTR 6334458 6334767 6334458 ID=Msa0439920-mRNA-1:five_prime_utr;Parent=Msa0439920-mRNA-1
chr3_3 five_prime_UTR 6335425 6335482 6335425 ID=Msa0439920-mRNA-1:five_prime_utr;Parent=Msa0439920-mRNA-1
chr3_3 CDS 6335483 6335755 6335483 ID=Msa0439920-mRNA-1:cds;Parent=Msa0439920-mRNA-1
chr3_3 CDS 6335892 6336162 6335892 ID=Msa0439920-mRNA-1:cds;Parent=Msa0439920-mRNA-1
chr3_3 CDS 6336307 6336461 6336307 ID=Msa0439920-mRNA-1:cds;Parent=Msa0439920-mRNA-1
chr3_3 CDS 6336671 6336763 6336671 ID=Msa0439920-mRNA-1:cds;Parent=Msa0439920-mRNA-1
chr3_3 CDS 6337034 6337167 6337034 ID=Msa0439920-mRNA-1:cds;Parent=Msa0439920-mRNA-1
chr3_3 CDS 6337255 6337330 6337255 ID=Msa0439920-mRNA-1:cds;Parent=Msa0439920-mRNA-1
chr3_3 CDS 6337613 6337689 6337613 ID=Msa0439920-mRNA-1:cds;Parent=Msa0439920-mRNA-1
chr3_3 CDS 6337794 6337827 6337794 ID=Msa0439920-mRNA-1:cds;Parent=Msa0439920-mRNA-1
chr3_3 CDS 6337925 6338074 6337925 ID=Msa0439920-mRNA-1:cds;Parent=Msa0439920-mRNA-1
chr3_3 CDS 6338168 6338305 6338168 ID=Msa0439920-mRNA-1:cds;Parent=Msa0439920-mRNA-1
chr3_3 CDS 6338462 6338515 6338462 ID=Msa0439920-mRNA-1:cds;Parent=Msa0439920-mRNA-1
chr3_3 three_prime_UTR 6338516 6338968 6338516 ID=Msa0439920-mRNA-1:three_prime_utr;Parent=Msa0439920-mRNA-1
Gene Sequence

>Msa0439920

ATGAGGAAGAGTGTCACTCTGAAAGCTGGAGAAGTTCCAAGTCGATTGACTCGTGCTCGAGCTGTGGCTTTAAGTACATCTGGACAGTTACCACCAATGAAGGAGGTAGCACCAGGAACTCAGAATCAGAAGCAGCCCCTAAGAGCCAATTCAAAAAGAGCAGTTTCAGATGTTACATATCTTCCTCATGAAATGAGGGCAATTCTTCAAGATGTCACTAACAATTGCGGCGAAAATACAAACAGGAGTTGCTTAAATCCAACTGAAATTCAGGCTAAGAAAAGGAAGGTGGCTAAGCCTGCTCAACCTGATGTTTCAAATGAGGTTCCATCAGCTGCTGAGCGACCACCGTTCATAGCTGACTCAAAACCGGTGAGTTCAATGGAAATGCGGCTTAGATCATCAGAAGATTTCAGGTGCTTAGATGATTTGGAAGACAATGCACCTTTTAGGATGAGTTCCAACCAGAGTGGCACAAACAATAATCTGCTTCAAAACCAGACATCTCGAATATCTGCTCGGCTTTTGAGTTCTCAGAAGAAAGCTTCACAAATTGTTGCAGCCAAGAAAGGTAACATTTCTGAACTTTTGGATGTGTCAAAGCATCCAGATGTCGCTGACATAGACGCTGATTTTGAAGATCCTCAACTATGCAGCCACTATGCTGCTGATATATATGACCACTTGCGTGTTGCTGAGCTGTCAAGAAGGCCTTATCCTAACTTCATGGAAACAGTACAGCAAGATATCACTCCAAGCATGCGTGCGATACTGGTTGATTGGCTTGTTGAGGTTTCTGAGGGATACAAATTGCAAGCAAACACTCTTTTCCTCACTGTATATCTCATTGATTGGTTTCTCTCCAAAAATTGTATTGAAAGAGAGAGACTTCAGCTGCTGGGCATTACTTGCATGCTAATTGCCACAAAATACGAAGAAATTAACGCCCCTCGTATTGAAGACTTCTGCTTCATCACGGATAACACATACGTAAAAGAGGAGGTAGTAAAACTGGAATCTCTAGTGCTGAAGTCCTCTTCATATCAACTATTTGCTCCTACTACCAAAACTTTCCTCAGGAGGTTTCTTCGAGCGGCACAAGCTTCCTACAAGAGGCCTAGCATTGAGTTGGAGTACTTGGCAAATTACCTGGCTGAACTAACACTGATGAACTATGGTTTCTTAAACTTCCTTCCTTCTATGGTCGCTGCATCTTCCGTGTTTCTTGCACGATGGACATTAGATCAGTCAAGCCACCCATGGAATCCAACTCTTGAACAGTATGCCTCTTACAAAGCATCAGATTTGAAAGCTACAGTTCTTGCATTACAAGATCTACAGCTGAATAGTAATGATGACTGCCCTTTAACCGCCATCCGCAAGAAGTACACACAAGACAAGCTCAATTGTGTAGCAGCTTTATCTTCACCAAAACTGCTTGAAACATTGTTCTGA
Protein sequence

>Msa0439920

MRKSVTLKAGEVPSRLTRARAVALSTSGQLPPMKEVAPGTQNQKQPLRANSKRAVSDVTYLPHEMRAILQDVTNNCGENTNRSCLNPTEIQAKKRKVAKPAQPDVSNEVPSAAERPPFIADSKPVSSMEMRLRSSEDFRCLDDLEDNAPFRMSSNQSGTNNNLLQNQTSRISARLLSSQKKASQIVAAKKGNISELLDVSKHPDVADIDADFEDPQLCSHYAADIYDHLRVAELSRRPYPNFMETVQQDITPSMRAILVDWLVEVSEGYKLQANTLFLTVYLIDWFLSKNCIERERLQLLGITCMLIATKYEEINAPRIEDFCFITDNTYVKEEVVKLESLVLKSSSYQLFAPTTKTFLRRFLRAAQASYKRPSIELEYLANYLAELTLMNYGFLNFLPSMVAASSVFLARWTLDQSSHPWNPTLEQYASYKASDLKATVLALQDLQLNSNDDCPLTAIRKKYTQDKLNCVAALSSPKLLETLF*