AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0678260

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0678260 MtrunA17_Chr4g0023131 95.678 671 25 2 1 671 1 667 0.0 1293
Msa0678260 MtrunA17_Chr3g0115891 53.600 250 107 2 329 570 358 606 3.10e-76 257
Msa0678260 MtrunA17_Chr5g0426251 50.000 254 111 4 329 571 337 585 2.17e-68 235
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0678260 AT4G03260.1 45.467 706 314 22 1 667 1 674 9.60e-158 471
Msa0678260 AT4G03260.4 45.467 706 314 22 1 667 1 674 9.60e-158 471
Msa0678260 AT4G03260.3 45.467 706 314 22 1 667 1 674 9.60e-158 471
Msa0678260 AT4G03260.2 45.467 706 314 22 1 667 1 674 9.60e-158 471
Msa0678260 AT1G78230.1 48.936 282 131 3 320 593 358 634 3.74e-73 249
Msa0678260 AT5G22320.1 35.106 188 108 5 410 592 103 281 3.83e-15 79.0
Msa0678260 AT5G22320.2 32.474 194 111 5 410 592 81 265 4.04e-11 66.2

Find 200 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACTAACCGATTGCGTTTC+CGG 0.120020 4_4:-33692198 None:intergenic
TCTGATGATCTTTGTGCTTT+AGG 0.181975 4_4:+33691645 Msa0678260:CDS
CCCAAAGCTGGAAATTGTTT+TGG 0.201890 4_4:-33691358 None:intergenic
AGTAGCAAATTTACGGTCTT+TGG 0.225865 4_4:+33690726 Msa0678260:five_prime_UTR
TATTGTTGCGAGAGTGCTTC+TGG 0.229130 4_4:-33690702 None:intergenic
TGCTTTCCTTTGGACAGTTT+TGG 0.229473 4_4:-33693066 None:intergenic
ACGGTCTTTGGTTAGGCTTC+TGG 0.232657 4_4:+33690738 Msa0678260:five_prime_UTR
TGGTTCTGATTGGTGGGAGC+TGG 0.234101 4_4:-33693092 None:intergenic
AGCGTAGAAGCTTTGATATT+TGG 0.238230 4_4:-33691570 None:intergenic
GATCATGCCGGTGGCTCTGC+TGG 0.246477 4_4:+33691489 Msa0678260:CDS
TAGAAAATTGAATGAATAAA+AGG 0.253390 4_4:+33689551 Msa0678260:five_prime_UTR
TTAGAGCTGCCAATTGAATT+TGG 0.255967 4_4:-33691327 None:intergenic
TTTGATTCTCATCTACTTTC+CGG 0.257400 4_4:+33691789 Msa0678260:CDS
TCCAAAACAATTTCCAGCTT+TGG 0.257488 4_4:+33691357 Msa0678260:CDS
ACTCACGAATGCACTCAAAA+AGG 0.259414 4_4:-33692156 None:intergenic
CCAAAACAATTTCCAGCTTT+GGG 0.270159 4_4:+33691358 Msa0678260:CDS
GTTGGATTGTCCGTTGATTA+TGG 0.272092 4_4:+33690655 Msa0678260:five_prime_UTR
GAAGCATAAAGCCCACTTAT+TGG 0.286337 4_4:-33693371 None:intergenic
ACTTTAGGATCAACAGATTC+TGG 0.288575 4_4:-33691984 None:intergenic
TTAACCTTAAAATCCTTGTT+AGG 0.293999 4_4:-33691894 None:intergenic
ATCTTTGTGCTTTAGGCTTA+AGG 0.309886 4_4:+33691652 Msa0678260:CDS
CTATTCTCGCACCTCTAAAA+AGG 0.310594 4_4:+33690543 Msa0678260:five_prime_UTR
GCGACTTTGTGTTGATGTTT+TGG 0.320861 4_4:-33693112 None:intergenic
GAGCTGGGCTTGCTTTCCTT+TGG 0.323922 4_4:-33693076 None:intergenic
TTACCTTTGTCTTGTTGCCT+TGG 0.325261 4_4:-33690871 None:intergenic
TTGAGATTGCGTAGCATTGC+AGG 0.325884 4_4:+33689593 Msa0678260:five_prime_UTR
TTCAAACCATTTGCTTTGAA+TGG 0.330254 4_4:-33692916 None:intergenic
TACCTTTGTCTTGTTGCCTT+GGG 0.331607 4_4:-33690870 None:intergenic
CATGTCCAATTCTTAGTATA+CGG 0.332226 4_4:-33692452 None:intergenic
TCAGTAATATCATCTGTAAT+TGG 0.333475 4_4:-33691834 None:intergenic
TGGTGAGTCATAGCGGCTTT+TGG 0.343968 4_4:-33691307 None:intergenic
GGGTCTGCTTACCAGACTTC+TGG 0.344012 4_4:+33691510 Msa0678260:CDS
ACAATATAGTAGCAAATTTA+CGG 0.344688 4_4:+33690719 Msa0678260:five_prime_UTR
GGTTAAGCGGATTGAGGATT+GGG 0.365508 4_4:+33691911 Msa0678260:CDS
TGAGCACATTGGTAGATTAG+AGG 0.377017 4_4:+33691158 Msa0678260:CDS
GGCGTCCTGTTCTTCTCTAA+AGG 0.379103 4_4:+33692645 Msa0678260:CDS
AAGCATAAAGCCCACTTATT+GGG 0.381304 4_4:-33693370 None:intergenic
TTCAAGTTCAACGGTTTGTT+GGG 0.381655 4_4:-33693150 None:intergenic
GCGGTGTTAATATCAACTTT+AGG 0.383955 4_4:-33691999 None:intergenic
GGCAGCCACGGCGGCATTTG+CGG 0.385591 4_4:-33692018 None:intergenic
AAACCGTTGAACTTGAATTC+AGG 0.388994 4_4:+33693156 Msa0678260:CDS
TGCAAGTTGTCCAAGACATT+TGG 0.391987 4_4:-33692767 None:intergenic
GGGGATCGTGCACTTCGATT+AGG 0.396337 4_4:+33692946 Msa0678260:CDS
AGGGTTCCCTTCCAAGTTGA+TGG 0.401385 4_4:-33692812 None:intergenic
AATGCAATTAATTTCAATGA+TGG 0.404481 4_4:+33693477 Msa0678260:three_prime_UTR
CAAATTTACGGTCTTTGGTT+AGG 0.405561 4_4:+33690731 Msa0678260:five_prime_UTR
GGTTCTGATTGGTGGGAGCT+GGG 0.406284 4_4:-33693091 None:intergenic
AACCGAGGGTGATCAAGATC+TGG 0.408569 4_4:+33691278 Msa0678260:CDS
GAACGTGACTTTCTTAAAGT+TGG 0.411937 4_4:-33691543 None:intergenic
TACAACCGTATACTAAGAAT+TGG 0.413209 4_4:+33692447 Msa0678260:CDS
AATTCTGATACTCCACTATC+AGG 0.419268 4_4:+33691465 Msa0678260:CDS
GCAGCTCAGCTGGCGAATCA+TGG 0.419292 4_4:+33692119 Msa0678260:CDS
TGAACAGCATAGATTATTGT+TGG 0.422685 4_4:+33690769 Msa0678260:five_prime_UTR
AAACAATATCTCCACTATAG+AGG 0.423035 4_4:+33692383 Msa0678260:CDS
CAGTTGAAATCTTGTTAAAA+CGG 0.426413 4_4:-33692744 None:intergenic
ATGGAGATTGTGCCGTGTTT+CGG 0.426723 4_4:+33690633 Msa0678260:five_prime_UTR
ACTGATGCCGAACCCCTTCA+AGG 0.428986 4_4:+33691852 Msa0678260:CDS
CGGCAGCCATTCAAAGCAAA+TGG 0.442664 4_4:+33692910 Msa0678260:CDS
CCGGCATGATCGCCTGATAG+TGG 0.444982 4_4:-33691477 None:intergenic
ATTGTTGCGAGAGTGCTTCT+GGG 0.447565 4_4:-33690701 None:intergenic
TTTAAAAGCATGGTTATTTG+TGG 0.448582 4_4:-33691598 None:intergenic
CACTCGAGGAATCTCCTTGA+AGG 0.448953 4_4:-33691866 None:intergenic
AGGTTAAGCGGATTGAGGAT+TGG 0.449196 4_4:+33691910 Msa0678260:CDS
TTGAAGGTGCTCAATTTGTC+CGG 0.453051 4_4:+33692179 Msa0678260:CDS
CTTTCTTAAAGTTGGCGTAC+AGG 0.453907 4_4:-33691535 None:intergenic
GAATGCCACTGCAGCTCAGC+TGG 0.454505 4_4:+33692109 Msa0678260:CDS
ATTTCAACTGCCAAATGTCT+TGG 0.456354 4_4:+33692757 Msa0678260:CDS
CAGCTCCTTTAGAGAAGAAC+AGG 0.456601 4_4:-33692650 None:intergenic
GGAATCTCCTTGAAGGGGTT+CGG 0.456755 4_4:-33691859 None:intergenic
ATCATGCCGGTGGCTCTGCT+GGG 0.457262 4_4:+33691490 Msa0678260:CDS
ATTCAAGTTCAACGGTTTGT+TGG 0.457631 4_4:-33693151 None:intergenic
TTCGCCAAACTGGGCGTATG+AGG 0.459263 4_4:+33691220 Msa0678260:CDS
TTCTCTAAAGGAGCTGTACC+TGG 0.462475 4_4:+33692657 Msa0678260:CDS
CCCATCTTGTCTACTACAAT+CGG 0.468057 4_4:+33692890 Msa0678260:CDS
GAACAAAGGCATCAGACATA+TGG 0.469276 4_4:+33690614 Msa0678260:five_prime_UTR
CTCGAGTGAGTTTCCTAACA+AGG 0.469915 4_4:+33691881 Msa0678260:CDS
GCATAGATTATTGTTGGTAG+TGG 0.469989 4_4:+33690775 Msa0678260:five_prime_UTR
AAGATGCATGTTTAAAAGCA+TGG 0.472280 4_4:-33691608 None:intergenic
CGCAGCGAGAGTACTCTACT+TGG 0.474375 4_4:+33693198 Msa0678260:CDS
AACCGTTGAACTTGAATTCA+GGG 0.474426 4_4:+33693157 Msa0678260:CDS
GCGTACAGGGACCAGAAGTC+TGG 0.475151 4_4:-33691521 None:intergenic
TCTTGTTAAAACGGATATCC+AGG 0.475904 4_4:-33692735 None:intergenic
TTCACGTAATCCCTCTATAG+TGG 0.476373 4_4:-33692394 None:intergenic
CTAAAGGAGCTGTACCTGGC+TGG 0.478201 4_4:+33692661 Msa0678260:CDS
TCTACTTTCCGGCTTACAAA+AGG 0.478234 4_4:+33691800 Msa0678260:CDS
GAGTGCATTCGTGAGTTTGA+AGG 0.479495 4_4:+33692163 Msa0678260:CDS
AGCTGTTTCCATTCCTGGAG+TGG 0.479609 4_4:-33692060 None:intergenic
TATGACTCACCAAATTCAAT+TGG 0.482241 4_4:+33691318 Msa0678260:CDS
GGGCAGACAGATTGACAGGC+AGG 0.484359 4_4:+33689614 Msa0678260:five_prime_UTR
CGGATTGAGGATTGGGTGAT+CGG 0.486361 4_4:+33691918 Msa0678260:CDS
AAAATAGTAAAAGAGAAAAG+AGG 0.488135 4_4:-33689698 None:intergenic
CCAGGATGCTTAGTTTCAGC+AGG 0.488416 4_4:-33692717 None:intergenic
AATTTGTCCGGAAACGCAAT+CGG 0.491445 4_4:+33692191 Msa0678260:CDS
CACCAATCTTGTTTCCAGCC+AGG 0.492051 4_4:-33692675 None:intergenic
ATTCAAAGCAAATGGTTTGA+AGG 0.492489 4_4:+33692918 Msa0678260:CDS
TCTACTTGGAGCTTTGTAAG+AGG 0.495350 4_4:+33693212 Msa0678260:exon
GTGGTGAATTTAAGCCTGTA+GGG 0.497136 4_4:-33691068 None:intergenic
ATGGACAGATACTTCGATGA+TGG 0.497494 4_4:+33691765 Msa0678260:CDS
AAAGATTCGCCTATCCCTAC+AGG 0.497799 4_4:+33691054 Msa0678260:CDS
CAGCTCAGCTGGCGAATCAT+GGG 0.498295 4_4:+33692120 Msa0678260:CDS
AAAGAGGAGAGACTTGATGA+TGG 0.499180 4_4:-33689682 None:intergenic
GAATTTAAGCCTGTAGGGAT+AGG 0.501167 4_4:-33691063 None:intergenic
GTAGCTTGTTGCCCAATAAG+TGG 0.502030 4_4:+33693359 Msa0678260:three_prime_UTR
GCATTGCAAATTGATTCGTT+TGG 0.502277 4_4:+33693240 Msa0678260:three_prime_UTR
ACCGAGGGTGATCAAGATCT+GGG 0.504360 4_4:+33691279 Msa0678260:CDS
TGCAGGGCAGACAGATTGAC+AGG 0.509113 4_4:+33689610 Msa0678260:five_prime_UTR
TTTCTTAAAGTTGGCGTACA+GGG 0.510556 4_4:-33691534 None:intergenic
TTGCAAATTGATTCGTTTGG+TGG 0.512528 4_4:+33693243 Msa0678260:three_prime_UTR
TAGCTTGTTGCCCAATAAGT+GGG 0.515428 4_4:+33693360 Msa0678260:three_prime_UTR
AACAATATCTCCACTATAGA+GGG 0.516643 4_4:+33692384 Msa0678260:CDS
GCCGATTGTAGTAGACAAGA+TGG 0.518424 4_4:-33692891 None:intergenic
TTGCTAGCCATCAACTTGGA+AGG 0.519506 4_4:+33692805 Msa0678260:CDS
TTCTTTGCTAGCCATCAACT+TGG 0.521675 4_4:+33692801 Msa0678260:CDS
TGCCCTGAATTCAAGTTCAA+CGG 0.522472 4_4:-33693159 None:intergenic
GATGACTTGAAACCCAAAGC+TGG 0.525822 4_4:-33691370 None:intergenic
AGTAGACAAGATGGGGAAGA+AGG 0.526354 4_4:-33692882 None:intergenic
AGCAGACCCAGCAGAGCCAC+CGG 0.529448 4_4:-33691496 None:intergenic
GGCCATGCGTCTATTTACAT+TGG 0.531101 4_4:+33693264 Msa0678260:three_prime_UTR
TACGGTTGTAGCTGAGGTCT+AGG 0.534252 4_4:-33692434 None:intergenic
TGTTGGGAGAATCAAAATGA+TGG 0.537463 4_4:-33693134 None:intergenic
CCGATTGTAGTAGACAAGAT+GGG 0.537803 4_4:-33692890 None:intergenic
ATCCCTAGCTGTGACAATGA+AGG 0.538144 4_4:+33691390 Msa0678260:CDS
TTTCCGGCTTACAAAAGGAC+TGG 0.541032 4_4:+33691805 Msa0678260:CDS
ACTCGAGGAATCTCCTTGAA+GGG 0.541483 4_4:-33691865 None:intergenic
TGCTAGCCATCAACTTGGAA+GGG 0.542096 4_4:+33692806 Msa0678260:CDS
AGACAGATTGACAGGCAGGC+AGG 0.542914 4_4:+33689618 Msa0678260:five_prime_UTR
TCATAAGACCACTCCAGGAA+TGG 0.543761 4_4:+33692052 Msa0678260:CDS
TAAATCTTCAACTGAAGCAA+TGG 0.545570 4_4:+33690993 Msa0678260:CDS
GGCTAGCAAAGAATTATAGT+TGG 0.545735 4_4:-33692791 None:intergenic
AGGGATTACGTGAACTTACT+CGG 0.548078 4_4:+33692403 Msa0678260:CDS
TCACGAGCATCTTTATCGGA+AGG 0.548718 4_4:-33691441 None:intergenic
CCCCAGATCTTGATCACCCT+CGG 0.550081 4_4:-33691280 None:intergenic
CGCCGTGGCTGCCTCAGTTG+TGG 0.550765 4_4:+33692028 Msa0678260:CDS
ATGTGTCTTATGATCAAAGA+GGG 0.553538 4_4:+33691694 Msa0678260:CDS
CCTGCTGAAACTAAGCATCC+TGG 0.555759 4_4:+33692717 Msa0678260:CDS
AAAGCAAATGGTTTGAAGGA+CGG 0.557095 4_4:+33692922 Msa0678260:CDS
TTAGTATACGGTTGTAGCTG+AGG 0.557096 4_4:-33692440 None:intergenic
ATCCACAACTGAGGCAGCCA+CGG 0.557824 4_4:-33692030 None:intergenic
GTGGATCATAAGACCACTCC+AGG 0.558948 4_4:+33692047 Msa0678260:CDS
GAAACTCAAGAAAGAGAAAG+TGG 0.558970 4_4:+33691717 Msa0678260:CDS
TTTAGGCTTAAGGAAGAAAG+AGG 0.562023 4_4:+33691662 Msa0678260:CDS
CCGTTGATTATGGCTAAGAG+TGG 0.563957 4_4:+33690665 Msa0678260:five_prime_UTR
AGATTGTGCCGTGTTTCGGT+TGG 0.564319 4_4:+33690637 Msa0678260:five_prime_UTR
CCACTATCAGGCGATCATGC+CGG 0.565884 4_4:+33691477 Msa0678260:CDS
CGATCGCAAGTCTACAAGGA+AGG 0.566829 4_4:+33693005 Msa0678260:CDS
GAGTCGATCGCAAGTCTACA+AGG 0.567579 4_4:+33693001 Msa0678260:CDS
TGAGAATGATGTTCTCGACC+AGG 0.568953 4_4:+33691128 Msa0678260:CDS
TCAGCTGGCGAATCATGGGT+TGG 0.569593 4_4:+33692124 Msa0678260:CDS
GAGCCTTCATTGTCACAGCT+AGG 0.569609 4_4:-33691393 None:intergenic
CAATGTGCTCAACTGAAACC+TGG 0.569780 4_4:-33691146 None:intergenic
AGAAAGAATCTATTTCACTC+TGG 0.570622 4_4:+33690501 Msa0678260:five_prime_UTR
TAAAAGGTTGTACGCTGTTG+TGG 0.572449 4_4:+33689567 Msa0678260:five_prime_UTR
GATGACCTCCGAGTAGATGA+TGG 0.572500 4_4:-33693030 None:intergenic
CAAATGGTTTGAAGGACGGT+GGG 0.572624 4_4:+33692926 Msa0678260:CDS
ATAGTTTGAATTTGTTATAG+CGG 0.574740 4_4:-33690524 None:intergenic
TACCTGGCTGGAAACAAGAT+TGG 0.575352 4_4:+33692673 Msa0678260:CDS
ATTCGCCAGCTGAGCTGCAG+TGG 0.578019 4_4:-33692114 None:intergenic
AGCCTTCATTGTCACAGCTA+GGG 0.578432 4_4:-33691392 None:intergenic
AACAAGATTGGTGAAGTCGA+GGG 0.578646 4_4:+33692685 Msa0678260:CDS
AGTGGTGAATTTAAGCCTGT+AGG 0.578785 4_4:-33691069 None:intergenic
ATAGGCGAATCTTTACCGAC+TGG 0.580126 4_4:-33691045 None:intergenic
GATCGCAAGTCTACAAGGAA+GGG 0.590122 4_4:+33693006 Msa0678260:CDS
AACCAATGTAAATAGACGCA+TGG 0.591749 4_4:-33693266 None:intergenic
TTTAATGTGTGAAGTCCTTG+AGG 0.604880 4_4:-33692351 None:intergenic
TTGAATTTGGTGAGTCATAG+CGG 0.606032 4_4:-33691314 None:intergenic
AAACAAGATTGGTGAAGTCG+AGG 0.607377 4_4:+33692684 Msa0678260:CDS
GAGATATTCATTAGTTTACG+TGG 0.608895 4_4:-33691105 None:intergenic
CTCGAGGAATCTCCTTGAAG+GGG 0.609456 4_4:-33691864 None:intergenic
TGAGATTGCGTAGCATTGCA+GGG 0.615318 4_4:+33689594 Msa0678260:five_prime_UTR
CAGGTTTCAGTTGAGCACAT+TGG 0.618242 4_4:+33691147 Msa0678260:CDS
TCAAGAAAGAGAAAGTGGCA+TGG 0.623527 4_4:+33691722 Msa0678260:CDS
GGATGCTTAGTTTCAGCAGG+CGG 0.624979 4_4:-33692714 None:intergenic
TCCTCACCAAAACTGTCCAA+AGG 0.625540 4_4:+33693060 Msa0678260:CDS
GCAAATGGTTTGAAGGACGG+TGG 0.626539 4_4:+33692925 Msa0678260:CDS
GGAAGGGACCATCATCTACT+CGG 0.627503 4_4:+33693022 Msa0678260:CDS
CGGACAATCCAACCGAAACA+CGG 0.628163 4_4:-33690645 None:intergenic
CGATTGTAGTAGACAAGATG+GGG 0.634882 4_4:-33692889 None:intergenic
ACTGCTGGTACTCTTCCTCA+AGG 0.637887 4_4:+33692336 Msa0678260:CDS
AATGTGTCTTATGATCAAAG+AGG 0.639665 4_4:+33691693 Msa0678260:CDS
CTATCAGGCGATCATGCCGG+TGG 0.642678 4_4:+33691480 Msa0678260:CDS
TGCCCAAGGCAACAAGACAA+AGG 0.646749 4_4:+33690868 Msa0678260:CDS
TTGTTGCGAGAGTGCTTCTG+GGG 0.648141 4_4:-33690700 None:intergenic
CACAACTGAGGCAGCCACGG+CGG 0.648440 4_4:-33692027 None:intergenic
ACAGGCAGGCAGGAAACTAG+AGG 0.650574 4_4:+33689628 Msa0678260:five_prime_UTR
TAACACCGCAAATGCCGCCG+TGG 0.652499 4_4:+33692013 Msa0678260:CDS
GTGATCGGTCTGCAGCATTG+TGG 0.653531 4_4:+33691933 Msa0678260:CDS
AAGGTGTGGGGTGATGAAGG+AGG 0.654404 4_4:+33690562 Msa0678260:five_prime_UTR
TCAGTTATATCCTCGAGAGG+AGG 0.658168 4_4:-33691957 None:intergenic
CCACTCTTAGCCATAATCAA+CGG 0.671013 4_4:-33690665 None:intergenic
GCATTGTGGACCTCCTCTCG+AGG 0.671495 4_4:+33691947 Msa0678260:CDS
AAATGGTTTGAAGGACGGTG+GGG 0.673778 4_4:+33692927 Msa0678260:CDS
CGTATACTAAGAATTGGACA+TGG 0.673937 4_4:+33692453 Msa0678260:CDS
CTTGTTAGGAAACTCACTCG+AGG 0.675608 4_4:-33691880 None:intergenic
GCGTATGAGGAAAAGTCAGT+CGG 0.678762 4_4:+33691233 Msa0678260:CDS
AATTCAGTTATATCCTCGAG+AGG 0.680076 4_4:-33691960 None:intergenic
TGTGTCTTATGATCAAAGAG+GGG 0.701861 4_4:+33691695 Msa0678260:CDS
CCGAGGGTGATCAAGATCTG+GGG 0.705913 4_4:+33691280 Msa0678260:CDS
GGTCTTATGATCCACAACTG+AGG 0.735088 4_4:-33692039 None:intergenic
AGGGACCATCATCTACTCGG+AGG 0.743407 4_4:+33693025 Msa0678260:CDS
TCTCAACTACGAGAATCCCG+AGG 0.747362 4_4:-33690481 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAGCTAATTTTAATTTA+TGG + chr4_4:33689932-33689951 Msa0678260:intron 10.0%
!! TAGAAAATTGAATGAATAAA+AGG + chr4_4:33689551-33689570 Msa0678260:five_prime_UTR 15.0%
!!! TAAGTTCTTTCATTTTTTTA+TGG + chr4_4:33689728-33689747 Msa0678260:intron 15.0%
!! AATTTATCTGATTAAAATTC+AGG + chr4_4:33689843-33689862 Msa0678260:intron 15.0%
!!! GATTGATTTTTTATTTATGT+CGG + chr4_4:33690229-33690248 Msa0678260:intron 15.0%
!!! ATTGATTTTTTATTTATGTC+GGG + chr4_4:33690230-33690249 Msa0678260:intron 15.0%
!!! TTAATTTTCCTTAAATTATG+TGG + chr4_4:33690257-33690276 Msa0678260:intron 15.0%
!!! AATTTTAAAACATTTGATTC+TGG + chr4_4:33693333-33693352 Msa0678260:three_prime_UTR 15.0%
!!! ATTTTAAAACATTTGATTCT+GGG + chr4_4:33693334-33693353 Msa0678260:three_prime_UTR 15.0%
!! AAAATAGTAAAAGAGAAAAG+AGG - chr4_4:33689701-33689720 None:intergenic 20.0%
!!! AATTTTGAGAATATTGAAGT+TGG + chr4_4:33689895-33689914 Msa0678260:intron 20.0%
!!! TTAATTTTGCTTAAATTCTG+TGG + chr4_4:33690097-33690116 Msa0678260:intron 20.0%
!!! TTGATTTTTTATTTATGTCG+GGG + chr4_4:33690231-33690250 Msa0678260:intron 20.0%
!! ATATACAACCACATAATTTA+AGG - chr4_4:33690268-33690287 None:intergenic 20.0%
!!! TGATGTTGTTTTATTCAAAT+AGG + chr4_4:33690434-33690453 Msa0678260:intron 20.0%
!!! ATAGTTTGAATTTGTTATAG+CGG - chr4_4:33690527-33690546 None:intergenic 20.0%
!! ACAATATAGTAGCAAATTTA+CGG + chr4_4:33690719-33690738 Msa0678260:five_prime_UTR 20.0%
!! AAAAACTGAAGATAATCATA+TGG + chr4_4:33691746-33691765 Msa0678260:CDS 20.0%
!! AATACAATGTCAACAATTAA+TGG - chr4_4:33692558-33692577 None:intergenic 20.0%
!! AATGCAATTAATTTCAATGA+TGG + chr4_4:33693477-33693496 Msa0678260:three_prime_UTR 20.0%
!!! AGATTGATTTGTGTTTTTGT+GGG + chr4_4:33690072-33690091 Msa0678260:intron 25.0%
!!! ATCTCACAATTTGATTTTTG+AGG + chr4_4:33690157-33690176 Msa0678260:intron 25.0%
!!! TGATTTTTTATTTATGTCGG+GGG + chr4_4:33690232-33690251 Msa0678260:intron 25.0%
!!! TTTGTCTTTTAACTATACTC+TGG + chr4_4:33690373-33690392 Msa0678260:intron 25.0%
!!! GTTGTTTTATTCAAATAGGT+TGG + chr4_4:33690438-33690457 Msa0678260:intron 25.0%
! AGTATAGACTTTGTATAACT+TGG + chr4_4:33690914-33690933 Msa0678260:intron 25.0%
!! TTTAAAAGCATGGTTATTTG+TGG - chr4_4:33691601-33691620 None:intergenic 25.0%
! TCAGTAATATCATCTGTAAT+TGG - chr4_4:33691837-33691856 None:intergenic 25.0%
! TTAACCTTAAAATCCTTGTT+AGG - chr4_4:33691897-33691916 None:intergenic 25.0%
! GTTGTGACAATCTTTAAATT+TGG + chr4_4:33692256-33692275 Msa0678260:intron 25.0%
! ACTGAAAAAGAGAATTCAAA+AGG - chr4_4:33692309-33692328 None:intergenic 25.0%
!!! TTGAATTCTCTTTTTCAGTA+AGG + chr4_4:33692310-33692329 Msa0678260:intron 25.0%
!! AACACAGATTATTTCAAGTA+TGG - chr4_4:33692509-33692528 None:intergenic 25.0%
! CAAAAATAAAGAAACGTTGA+CGG - chr4_4:33692597-33692616 None:intergenic 25.0%
! CAGTTGAAATCTTGTTAAAA+CGG - chr4_4:33692747-33692766 None:intergenic 25.0%
!!! GAGATTGATTTGTGTTTTTG+TGG + chr4_4:33690071-33690090 Msa0678260:intron 30.0%
!!! GATTGATTTGTGTTTTTGTG+GGG + chr4_4:33690073-33690092 Msa0678260:intron 30.0%
!!! ATTGATTTGTGTTTTTGTGG+GGG + chr4_4:33690074-33690093 Msa0678260:intron 30.0%
!!! GATTTTTTATTTATGTCGGG+GGG + chr4_4:33690233-33690252 Msa0678260:intron 30.0%
ATACACAAACGGATAAATTG+CGG - chr4_4:33690302-33690321 None:intergenic 30.0%
AGAAAGAATCTATTTCACTC+TGG + chr4_4:33690501-33690520 Msa0678260:five_prime_UTR 30.0%
TGAACAGCATAGATTATTGT+TGG + chr4_4:33690769-33690788 Msa0678260:five_prime_UTR 30.0%
! TGTTTTCATATTAATGCCCA+AGG + chr4_4:33690854-33690873 Msa0678260:CDS 30.0%
TAGACTTTGTATAACTTGGT+TGG + chr4_4:33690918-33690937 Msa0678260:intron 30.0%
GCTTAAAGTCAAAATAATCC+AGG - chr4_4:33690949-33690968 None:intergenic 30.0%
TAAATCTTCAACTGAAGCAA+TGG + chr4_4:33690993-33691012 Msa0678260:CDS 30.0%
! GAGATATTCATTAGTTTACG+TGG - chr4_4:33691108-33691127 None:intergenic 30.0%
TATGACTCACCAAATTCAAT+TGG + chr4_4:33691318-33691337 Msa0678260:CDS 30.0%
!!! CACTTTTTTCAATAGGAGAT+CGG + chr4_4:33691415-33691434 Msa0678260:CDS 30.0%
! ATTTTCACGAGCATCTTTAT+CGG - chr4_4:33691448-33691467 None:intergenic 30.0%
AAGATGCATGTTTAAAAGCA+TGG - chr4_4:33691611-33691630 None:intergenic 30.0%
AATGTGTCTTATGATCAAAG+AGG + chr4_4:33691693-33691712 Msa0678260:CDS 30.0%
ATGTGTCTTATGATCAAAGA+GGG + chr4_4:33691694-33691713 Msa0678260:CDS 30.0%
TTTGATTCTCATCTACTTTC+CGG + chr4_4:33691789-33691808 Msa0678260:CDS 30.0%
! GTTTCCTAACAAGGATTTTA+AGG + chr4_4:33691890-33691909 Msa0678260:CDS 30.0%
!!! ACAAGGATTTTAAGGTTAAG+CGG + chr4_4:33691898-33691917 Msa0678260:CDS 30.0%
AAACAATATCTCCACTATAG+AGG + chr4_4:33692383-33692402 Msa0678260:CDS 30.0%
AACAATATCTCCACTATAGA+GGG + chr4_4:33692384-33692403 Msa0678260:CDS 30.0%
TACAACCGTATACTAAGAAT+TGG + chr4_4:33692447-33692466 Msa0678260:CDS 30.0%
CATGTCCAATTCTTAGTATA+CGG - chr4_4:33692455-33692474 None:intergenic 30.0%
! AATACTTTCCTCTTTTGCAA+AGG + chr4_4:33692619-33692638 Msa0678260:intron 30.0%
! TTCAAACCATTTGCTTTGAA+TGG - chr4_4:33692919-33692938 None:intergenic 30.0%
ATTCAAAGCAAATGGTTTGA+AGG + chr4_4:33692918-33692937 Msa0678260:CDS 30.0%
! TATTCTTAATTTTGCTGCAC+TGG + chr4_4:33693310-33693329 Msa0678260:three_prime_UTR 30.0%
ACCAAGCATACATACACAAA+CGG - chr4_4:33690313-33690332 None:intergenic 35.0%
TAACTATACTCTGGATACTC+TGG + chr4_4:33690382-33690401 Msa0678260:intron 35.0%
ACAACATCAAGTATCAGAGT+TGG - chr4_4:33690423-33690442 None:intergenic 35.0%
!! TAGGTTGGCATCTTTTTATG+CGG + chr4_4:33690453-33690472 Msa0678260:intron 35.0%
! CTTCGTTTTACGTAGAACAA+AGG + chr4_4:33690600-33690619 Msa0678260:five_prime_UTR 35.0%
AGTAGCAAATTTACGGTCTT+TGG + chr4_4:33690726-33690745 Msa0678260:five_prime_UTR 35.0%
CAAATTTACGGTCTTTGGTT+AGG + chr4_4:33690731-33690750 Msa0678260:five_prime_UTR 35.0%
! GCATAGATTATTGTTGGTAG+TGG + chr4_4:33690775-33690794 Msa0678260:five_prime_UTR 35.0%
! ATAACTTGGTTGGTATTACC+TGG + chr4_4:33690928-33690947 Msa0678260:intron 35.0%
GATAGTTCCAAAAATCCAGT+CGG + chr4_4:33691030-33691049 Msa0678260:CDS 35.0%
!! ATCTTTACCGACTGGATTTT+TGG - chr4_4:33691040-33691059 None:intergenic 35.0%
ACAAAAAAGTTCGCCAAACT+GGG + chr4_4:33691211-33691230 Msa0678260:CDS 35.0%
! TTGAATTTGGTGAGTCATAG+CGG - chr4_4:33691317-33691336 None:intergenic 35.0%
TTAGAGCTGCCAATTGAATT+TGG - chr4_4:33691330-33691349 None:intergenic 35.0%
TCCAAAACAATTTCCAGCTT+TGG + chr4_4:33691357-33691376 Msa0678260:CDS 35.0%
CCAAAACAATTTCCAGCTTT+GGG + chr4_4:33691358-33691377 Msa0678260:CDS 35.0%
!!! GAAGGCTCACTTTTTTCAAT+AGG + chr4_4:33691408-33691427 Msa0678260:CDS 35.0%
AATTCTGATACTCCACTATC+AGG + chr4_4:33691465-33691484 Msa0678260:CDS 35.0%
TTTCTTAAAGTTGGCGTACA+GGG - chr4_4:33691537-33691556 None:intergenic 35.0%
GAACGTGACTTTCTTAAAGT+TGG - chr4_4:33691546-33691565 None:intergenic 35.0%
! AGCGTAGAAGCTTTGATATT+TGG - chr4_4:33691573-33691592 None:intergenic 35.0%
TCTGATGATCTTTGTGCTTT+AGG + chr4_4:33691645-33691664 Msa0678260:CDS 35.0%
! ATCTTTGTGCTTTAGGCTTA+AGG + chr4_4:33691652-33691671 Msa0678260:CDS 35.0%
TTTAGGCTTAAGGAAGAAAG+AGG + chr4_4:33691662-33691681 Msa0678260:CDS 35.0%
TGTGTCTTATGATCAAAGAG+GGG + chr4_4:33691695-33691714 Msa0678260:CDS 35.0%
GAAACTCAAGAAAGAGAAAG+TGG + chr4_4:33691717-33691736 Msa0678260:CDS 35.0%
!!! TTTTAAGGTTAAGCGGATTG+AGG + chr4_4:33691905-33691924 Msa0678260:CDS 35.0%
AATTCAGTTATATCCTCGAG+AGG - chr4_4:33691963-33691982 None:intergenic 35.0%
!! ACTTTAGGATCAACAGATTC+TGG - chr4_4:33691987-33692006 None:intergenic 35.0%
! GCGGTGTTAATATCAACTTT+AGG - chr4_4:33692002-33692021 None:intergenic 35.0%
! TTTTCAGTAAGGATAACTGC+TGG + chr4_4:33692321-33692340 Msa0678260:intron 35.0%
TTTAATGTGTGAAGTCCTTG+AGG - chr4_4:33692354-33692373 None:intergenic 35.0%
CGTATACTAAGAATTGGACA+TGG + chr4_4:33692453-33692472 Msa0678260:CDS 35.0%
GGACATGGTAAAAGAATTTC+TGG + chr4_4:33692468-33692487 Msa0678260:intron 35.0%
! TTTCCTCTTTTGCAAAGGTT+TGG + chr4_4:33692624-33692643 Msa0678260:intron 35.0%
TCTTGTTAAAACGGATATCC+AGG - chr4_4:33692738-33692757 None:intergenic 35.0%
ATTTCAACTGCCAAATGTCT+TGG + chr4_4:33692757-33692776 Msa0678260:CDS 35.0%
GGCTAGCAAAGAATTATAGT+TGG - chr4_4:33692794-33692813 None:intergenic 35.0%
! GTTCATCTCCAACATTTTTC+TGG - chr4_4:33692840-33692859 None:intergenic 35.0%
AAAGCAAATGGTTTGAAGGA+CGG + chr4_4:33692922-33692941 Msa0678260:CDS 35.0%
!!! ATGTTTTGGTTCTGATTGGT+GGG - chr4_4:33693101-33693120 None:intergenic 35.0%
!!! GTTGATGTTTTGGTTCTGAT+TGG - chr4_4:33693105-33693124 None:intergenic 35.0%
TGTTGGGAGAATCAAAATGA+TGG - chr4_4:33693137-33693156 None:intergenic 35.0%
! TTCAAGTTCAACGGTTTGTT+GGG - chr4_4:33693153-33693172 None:intergenic 35.0%
! ATTCAAGTTCAACGGTTTGT+TGG - chr4_4:33693154-33693173 None:intergenic 35.0%
AAACCGTTGAACTTGAATTC+AGG + chr4_4:33693156-33693175 Msa0678260:CDS 35.0%
AACCGTTGAACTTGAATTCA+GGG + chr4_4:33693157-33693176 Msa0678260:CDS 35.0%
!! GCATTGCAAATTGATTCGTT+TGG + chr4_4:33693240-33693259 Msa0678260:three_prime_UTR 35.0%
!! TTGCAAATTGATTCGTTTGG+TGG + chr4_4:33693243-33693262 Msa0678260:three_prime_UTR 35.0%
AACCAATGTAAATAGACGCA+TGG - chr4_4:33693269-33693288 None:intergenic 35.0%
AAGCATAAAGCCCACTTATT+GGG - chr4_4:33693373-33693392 None:intergenic 35.0%
TAAAAGGTTGTACGCTGTTG+TGG + chr4_4:33689567-33689586 Msa0678260:five_prime_UTR 40.0%
AAAGAGGAGAGACTTGATGA+TGG - chr4_4:33689685-33689704 None:intergenic 40.0%
TCCGTTTGTGTATGTATGCT+TGG + chr4_4:33690309-33690328 Msa0678260:intron 40.0%
AACAGTATCAACCACAACTC+AGG - chr4_4:33690352-33690371 None:intergenic 40.0%
! CTTTTTATGCGGATTTGCCT+CGG + chr4_4:33690464-33690483 Msa0678260:five_prime_UTR 40.0%
! TTTTTATGCGGATTTGCCTC+GGG + chr4_4:33690465-33690484 Msa0678260:five_prime_UTR 40.0%
! CTATTCTCGCACCTCTAAAA+AGG + chr4_4:33690543-33690562 Msa0678260:five_prime_UTR 40.0%
!! GAACAAAGGCATCAGACATA+TGG + chr4_4:33690614-33690633 Msa0678260:five_prime_UTR 40.0%
! GTTGGATTGTCCGTTGATTA+TGG + chr4_4:33690655-33690674 Msa0678260:five_prime_UTR 40.0%
CCACTCTTAGCCATAATCAA+CGG - chr4_4:33690668-33690687 None:intergenic 40.0%
! TACCTTTGTCTTGTTGCCTT+GGG - chr4_4:33690873-33690892 None:intergenic 40.0%
! TTACCTTTGTCTTGTTGCCT+TGG - chr4_4:33690874-33690893 None:intergenic 40.0%
GAATTTAAGCCTGTAGGGAT+AGG - chr4_4:33691066-33691085 None:intergenic 40.0%
GTGGTGAATTTAAGCCTGTA+GGG - chr4_4:33691071-33691090 None:intergenic 40.0%
AGTGGTGAATTTAAGCCTGT+AGG - chr4_4:33691072-33691091 None:intergenic 40.0%
TGAGCACATTGGTAGATTAG+AGG + chr4_4:33691158-33691177 Msa0678260:CDS 40.0%
GACAAAAAAGTTCGCCAAAC+TGG + chr4_4:33691210-33691229 Msa0678260:CDS 40.0%
!!! TCGGAAAGTGTGCTTTTTCA+AGG + chr4_4:33691252-33691271 Msa0678260:CDS 40.0%
!!! CTTTTTCAAGGCATAACCGA+GGG + chr4_4:33691264-33691283 Msa0678260:CDS 40.0%
! CCCAAAGCTGGAAATTGTTT+TGG - chr4_4:33691361-33691380 None:intergenic 40.0%
CTTTCTTAAAGTTGGCGTAC+AGG - chr4_4:33691538-33691557 None:intergenic 40.0%
TCAAGAAAGAGAAAGTGGCA+TGG + chr4_4:33691722-33691741 Msa0678260:CDS 40.0%
ATGGACAGATACTTCGATGA+TGG + chr4_4:33691765-33691784 Msa0678260:CDS 40.0%
TCTACTTTCCGGCTTACAAA+AGG + chr4_4:33691800-33691819 Msa0678260:CDS 40.0%
!! CTTTTAGCTGTTTCCATTCC+TGG - chr4_4:33692068-33692087 None:intergenic 40.0%
TCACGAATGCACTCAAAAAG+GGG - chr4_4:33692157-33692176 None:intergenic 40.0%
CTCACGAATGCACTCAAAAA+GGG - chr4_4:33692158-33692177 None:intergenic 40.0%
ACTCACGAATGCACTCAAAA+AGG - chr4_4:33692159-33692178 None:intergenic 40.0%
!! TTGAAGGTGCTCAATTTGTC+CGG + chr4_4:33692179-33692198 Msa0678260:CDS 40.0%
AATTTGTCCGGAAACGCAAT+CGG + chr4_4:33692191-33692210 Msa0678260:CDS 40.0%
TTCACGTAATCCCTCTATAG+TGG - chr4_4:33692397-33692416 None:intergenic 40.0%
AGGGATTACGTGAACTTACT+CGG + chr4_4:33692403-33692422 Msa0678260:CDS 40.0%
TTAGTATACGGTTGTAGCTG+AGG - chr4_4:33692443-33692462 None:intergenic 40.0%
AAACAAGATTGGTGAAGTCG+AGG + chr4_4:33692684-33692703 Msa0678260:CDS 40.0%
AACAAGATTGGTGAAGTCGA+GGG + chr4_4:33692685-33692704 Msa0678260:CDS 40.0%
TGCAAGTTGTCCAAGACATT+TGG - chr4_4:33692770-33692789 None:intergenic 40.0%
TTCTTTGCTAGCCATCAACT+TGG + chr4_4:33692801-33692820 Msa0678260:CDS 40.0%
AACCCTTGCCAGAAAAATGT+TGG + chr4_4:33692829-33692848 Msa0678260:CDS 40.0%
!! CTCCAACATTTTTCTGGCAA+GGG - chr4_4:33692834-33692853 None:intergenic 40.0%
!! TCTCCAACATTTTTCTGGCA+AGG - chr4_4:33692835-33692854 None:intergenic 40.0%
CGATTGTAGTAGACAAGATG+GGG - chr4_4:33692892-33692911 None:intergenic 40.0%
CCGATTGTAGTAGACAAGAT+GGG - chr4_4:33692893-33692912 None:intergenic 40.0%
CCCATCTTGTCTACTACAAT+CGG + chr4_4:33692890-33692909 Msa0678260:CDS 40.0%
! TGCTTTCCTTTGGACAGTTT+TGG - chr4_4:33693069-33693088 None:intergenic 40.0%
!!! GATGTTTTGGTTCTGATTGG+TGG - chr4_4:33693102-33693121 None:intergenic 40.0%
!! GCGACTTTGTGTTGATGTTT+TGG - chr4_4:33693115-33693134 None:intergenic 40.0%
! TGCCCTGAATTCAAGTTCAA+CGG - chr4_4:33693162-33693181 None:intergenic 40.0%
! TCTACTTGGAGCTTTGTAAG+AGG + chr4_4:33693212-33693231 Msa0678260:exon 40.0%
!! TAGCTTGTTGCCCAATAAGT+GGG + chr4_4:33693360-33693379 Msa0678260:three_prime_UTR 40.0%
GAAGCATAAAGCCCACTTAT+TGG - chr4_4:33693374-33693393 None:intergenic 40.0%
TTGAGATTGCGTAGCATTGC+AGG + chr4_4:33689593-33689612 Msa0678260:five_prime_UTR 45.0%
TGAGATTGCGTAGCATTGCA+GGG + chr4_4:33689594-33689613 Msa0678260:five_prime_UTR 45.0%
AGTATCAACCACAACTCAGG+AGG - chr4_4:33690349-33690368 None:intergenic 45.0%
! TCGCACCTCTAAAAAGGTGT+GGG + chr4_4:33690549-33690568 Msa0678260:five_prime_UTR 45.0%
! ATCACCCCACACCTTTTTAG+AGG - chr4_4:33690557-33690576 None:intergenic 45.0%
! AAAAAGGTGTGGGGTGATGA+AGG + chr4_4:33690559-33690578 Msa0678260:five_prime_UTR 45.0%
ATGGAGATTGTGCCGTGTTT+CGG + chr4_4:33690633-33690652 Msa0678260:five_prime_UTR 45.0%
! CCGTTGATTATGGCTAAGAG+TGG + chr4_4:33690665-33690684 Msa0678260:five_prime_UTR 45.0%
!! ATTGTTGCGAGAGTGCTTCT+GGG - chr4_4:33690704-33690723 None:intergenic 45.0%
!! TATTGTTGCGAGAGTGCTTC+TGG - chr4_4:33690705-33690724 None:intergenic 45.0%
ATAGGCGAATCTTTACCGAC+TGG - chr4_4:33691048-33691067 None:intergenic 45.0%
AAAGATTCGCCTATCCCTAC+AGG + chr4_4:33691054-33691073 Msa0678260:CDS 45.0%
!!! CGTGGTTGCTGTTTTGAAAG+TGG - chr4_4:33691090-33691109 None:intergenic 45.0%
TGAGAATGATGTTCTCGACC+AGG + chr4_4:33691128-33691147 Msa0678260:CDS 45.0%
CAATGTGCTCAACTGAAACC+TGG - chr4_4:33691149-33691168 None:intergenic 45.0%
CAGGTTTCAGTTGAGCACAT+TGG + chr4_4:33691147-33691166 Msa0678260:CDS 45.0%
! TTTTCCTCATACGCCCAGTT+TGG - chr4_4:33691227-33691246 None:intergenic 45.0%
GCGTATGAGGAAAAGTCAGT+CGG + chr4_4:33691233-33691252 Msa0678260:CDS 45.0%
!!! GCTTTTTCAAGGCATAACCG+AGG + chr4_4:33691263-33691282 Msa0678260:CDS 45.0%
GATGACTTGAAACCCAAAGC+TGG - chr4_4:33691373-33691392 None:intergenic 45.0%
ATCCCTAGCTGTGACAATGA+AGG + chr4_4:33691390-33691409 Msa0678260:CDS 45.0%
AGCCTTCATTGTCACAGCTA+GGG - chr4_4:33691395-33691414 None:intergenic 45.0%
TCACGAGCATCTTTATCGGA+AGG - chr4_4:33691444-33691463 None:intergenic 45.0%
TTTCCGGCTTACAAAAGGAC+TGG + chr4_4:33691805-33691824 Msa0678260:CDS 45.0%
! TGTCCAGTCCTTTTGTAAGC+CGG - chr4_4:33691811-33691830 None:intergenic 45.0%
ACTCGAGGAATCTCCTTGAA+GGG - chr4_4:33691868-33691887 None:intergenic 45.0%
CTTGTTAGGAAACTCACTCG+AGG - chr4_4:33691883-33691902 None:intergenic 45.0%
CTCGAGTGAGTTTCCTAACA+AGG + chr4_4:33691881-33691900 Msa0678260:CDS 45.0%
!! AGGTTAAGCGGATTGAGGAT+TGG + chr4_4:33691910-33691929 Msa0678260:CDS 45.0%
!! GGTTAAGCGGATTGAGGATT+GGG + chr4_4:33691911-33691930 Msa0678260:CDS 45.0%
TCAGTTATATCCTCGAGAGG+AGG - chr4_4:33691960-33691979 None:intergenic 45.0%
! GGTCTTATGATCCACAACTG+AGG - chr4_4:33692042-33692061 None:intergenic 45.0%
TCATAAGACCACTCCAGGAA+TGG + chr4_4:33692052-33692071 Msa0678260:CDS 45.0%
GAGTGCATTCGTGAGTTTGA+AGG + chr4_4:33692163-33692182 Msa0678260:CDS 45.0%
CAACTAACCGATTGCGTTTC+CGG - chr4_4:33692201-33692220 None:intergenic 45.0%
ACGCCAAACCTTTGCAAAAG+AGG - chr4_4:33692630-33692649 None:intergenic 45.0%
! CAGCTCCTTTAGAGAAGAAC+AGG - chr4_4:33692653-33692672 None:intergenic 45.0%
! TTCTCTAAAGGAGCTGTACC+TGG + chr4_4:33692657-33692676 Msa0678260:CDS 45.0%
TACCTGGCTGGAAACAAGAT+TGG + chr4_4:33692673-33692692 Msa0678260:CDS 45.0%
TTGCTAGCCATCAACTTGGA+AGG + chr4_4:33692805-33692824 Msa0678260:CDS 45.0%
TGCTAGCCATCAACTTGGAA+GGG + chr4_4:33692806-33692825 Msa0678260:CDS 45.0%
AGTAGACAAGATGGGGAAGA+AGG - chr4_4:33692885-33692904 None:intergenic 45.0%
GCCGATTGTAGTAGACAAGA+TGG - chr4_4:33692894-33692913 None:intergenic 45.0%
CAAATGGTTTGAAGGACGGT+GGG + chr4_4:33692926-33692945 Msa0678260:CDS 45.0%
AAATGGTTTGAAGGACGGTG+GGG + chr4_4:33692927-33692946 Msa0678260:CDS 45.0%
GATCGCAAGTCTACAAGGAA+GGG + chr4_4:33693006-33693025 Msa0678260:CDS 45.0%
TCCTCACCAAAACTGTCCAA+AGG + chr4_4:33693060-33693079 Msa0678260:CDS 45.0%
!! TCCTTTGGACAGTTTTGGTG+AGG - chr4_4:33693064-33693083 None:intergenic 45.0%
GGCCATGCGTCTATTTACAT+TGG + chr4_4:33693264-33693283 Msa0678260:three_prime_UTR 45.0%
!! GTAGCTTGTTGCCCAATAAG+TGG + chr4_4:33693359-33693378 Msa0678260:three_prime_UTR 45.0%
TGTACATGCCTCCTGAGTTG+TGG + chr4_4:33690338-33690357 Msa0678260:intron 50.0%
TCTCAACTACGAGAATCCCG+AGG - chr4_4:33690484-33690503 None:intergenic 50.0%
! CTCGCACCTCTAAAAAGGTG+TGG + chr4_4:33690548-33690567 Msa0678260:five_prime_UTR 50.0%
! CGCACCTCTAAAAAGGTGTG+GGG + chr4_4:33690550-33690569 Msa0678260:five_prime_UTR 50.0%
AGATTGTGCCGTGTTTCGGT+TGG + chr4_4:33690637-33690656 Msa0678260:five_prime_UTR 50.0%
CGGACAATCCAACCGAAACA+CGG - chr4_4:33690648-33690667 None:intergenic 50.0%
!! TTGTTGCGAGAGTGCTTCTG+GGG - chr4_4:33690703-33690722 None:intergenic 50.0%
ACGGTCTTTGGTTAGGCTTC+TGG + chr4_4:33690738-33690757 Msa0678260:five_prime_UTR 50.0%
TGCCCAAGGCAACAAGACAA+AGG + chr4_4:33690868-33690887 Msa0678260:CDS 50.0%
AACCGAGGGTGATCAAGATC+TGG + chr4_4:33691278-33691297 Msa0678260:CDS 50.0%
ACCGAGGGTGATCAAGATCT+GGG + chr4_4:33691279-33691298 Msa0678260:CDS 50.0%
! TGGTGAGTCATAGCGGCTTT+TGG - chr4_4:33691310-33691329 None:intergenic 50.0%
GAGCCTTCATTGTCACAGCT+AGG - chr4_4:33691396-33691415 None:intergenic 50.0%
GGAATCTCCTTGAAGGGGTT+CGG - chr4_4:33691862-33691881 None:intergenic 50.0%
CTCGAGGAATCTCCTTGAAG+GGG - chr4_4:33691867-33691886 None:intergenic 50.0%
CACTCGAGGAATCTCCTTGA+AGG - chr4_4:33691869-33691888 None:intergenic 50.0%
CGGATTGAGGATTGGGTGAT+CGG + chr4_4:33691918-33691937 Msa0678260:CDS 50.0%
GTGGATCATAAGACCACTCC+AGG + chr4_4:33692047-33692066 Msa0678260:CDS 50.0%
! AGCTGTTTCCATTCCTGGAG+TGG - chr4_4:33692063-33692082 None:intergenic 50.0%
ACTGCTGGTACTCTTCCTCA+AGG + chr4_4:33692336-33692355 Msa0678260:CDS 50.0%
TACGGTTGTAGCTGAGGTCT+AGG - chr4_4:33692437-33692456 None:intergenic 50.0%
GGCGTCCTGTTCTTCTCTAA+AGG + chr4_4:33692645-33692664 Msa0678260:CDS 50.0%
! CACCAATCTTGTTTCCAGCC+AGG - chr4_4:33692678-33692697 None:intergenic 50.0%
GGATGCTTAGTTTCAGCAGG+CGG - chr4_4:33692717-33692736 None:intergenic 50.0%
CCAGGATGCTTAGTTTCAGC+AGG - chr4_4:33692720-33692739 None:intergenic 50.0%
CCTGCTGAAACTAAGCATCC+TGG + chr4_4:33692717-33692736 Msa0678260:CDS 50.0%
! AGGGTTCCCTTCCAAGTTGA+TGG - chr4_4:33692815-33692834 None:intergenic 50.0%
CGGCAGCCATTCAAAGCAAA+TGG + chr4_4:33692910-33692929 Msa0678260:CDS 50.0%
GCAAATGGTTTGAAGGACGG+TGG + chr4_4:33692925-33692944 Msa0678260:CDS 50.0%
GAGTCGATCGCAAGTCTACA+AGG + chr4_4:33693001-33693020 Msa0678260:CDS 50.0%
CGATCGCAAGTCTACAAGGA+AGG + chr4_4:33693005-33693024 Msa0678260:CDS 50.0%
GGAAGGGACCATCATCTACT+CGG + chr4_4:33693022-33693041 Msa0678260:CDS 50.0%
GATGACCTCCGAGTAGATGA+TGG - chr4_4:33693033-33693052 None:intergenic 50.0%
TGCAGGGCAGACAGATTGAC+AGG + chr4_4:33689610-33689629 Msa0678260:five_prime_UTR 55.0%
AGACAGATTGACAGGCAGGC+AGG + chr4_4:33689618-33689637 Msa0678260:five_prime_UTR 55.0%
ACAGGCAGGCAGGAAACTAG+AGG + chr4_4:33689628-33689647 Msa0678260:five_prime_UTR 55.0%
AAGGTGTGGGGTGATGAAGG+AGG + chr4_4:33690562-33690581 Msa0678260:five_prime_UTR 55.0%
TTCGCCAAACTGGGCGTATG+AGG + chr4_4:33691220-33691239 Msa0678260:CDS 55.0%
CCCCAGATCTTGATCACCCT+CGG - chr4_4:33691283-33691302 None:intergenic 55.0%
CCGAGGGTGATCAAGATCTG+GGG + chr4_4:33691280-33691299 Msa0678260:CDS 55.0%
CCACTATCAGGCGATCATGC+CGG + chr4_4:33691477-33691496 Msa0678260:CDS 55.0%
GGGTCTGCTTACCAGACTTC+TGG + chr4_4:33691510-33691529 Msa0678260:CDS 55.0%
ACTGATGCCGAACCCCTTCA+AGG + chr4_4:33691852-33691871 Msa0678260:CDS 55.0%
GTGATCGGTCTGCAGCATTG+TGG + chr4_4:33691933-33691952 Msa0678260:CDS 55.0%
ATCCACAACTGAGGCAGCCA+CGG - chr4_4:33692033-33692052 None:intergenic 55.0%
CAGCTCAGCTGGCGAATCAT+GGG + chr4_4:33692120-33692139 Msa0678260:CDS 55.0%
TCAGCTGGCGAATCATGGGT+TGG + chr4_4:33692124-33692143 Msa0678260:CDS 55.0%
CTAAAGGAGCTGTACCTGGC+TGG + chr4_4:33692661-33692680 Msa0678260:CDS 55.0%
GGGGATCGTGCACTTCGATT+AGG + chr4_4:33692946-33692965 Msa0678260:CDS 55.0%
AGGGACCATCATCTACTCGG+AGG + chr4_4:33693025-33693044 Msa0678260:CDS 55.0%
! GAGCTGGGCTTGCTTTCCTT+TGG - chr4_4:33693079-33693098 None:intergenic 55.0%
! GGTTCTGATTGGTGGGAGCT+GGG - chr4_4:33693094-33693113 None:intergenic 55.0%
!! TGGTTCTGATTGGTGGGAGC+TGG - chr4_4:33693095-33693114 None:intergenic 55.0%
!! CGCAGCGAGAGTACTCTACT+TGG + chr4_4:33693198-33693217 Msa0678260:CDS 55.0%
GGGCAGACAGATTGACAGGC+AGG + chr4_4:33689614-33689633 Msa0678260:five_prime_UTR 60.0%
CCGGCATGATCGCCTGATAG+TGG - chr4_4:33691480-33691499 None:intergenic 60.0%
CTATCAGGCGATCATGCCGG+TGG + chr4_4:33691480-33691499 Msa0678260:CDS 60.0%
! ATCATGCCGGTGGCTCTGCT+GGG + chr4_4:33691490-33691509 Msa0678260:CDS 60.0%
GCGTACAGGGACCAGAAGTC+TGG - chr4_4:33691524-33691543 None:intergenic 60.0%
GCATTGTGGACCTCCTCTCG+AGG + chr4_4:33691947-33691966 Msa0678260:CDS 60.0%
TAACACCGCAAATGCCGCCG+TGG + chr4_4:33692013-33692032 Msa0678260:CDS 60.0%
GAATGCCACTGCAGCTCAGC+TGG + chr4_4:33692109-33692128 Msa0678260:CDS 60.0%
ATTCGCCAGCTGAGCTGCAG+TGG - chr4_4:33692117-33692136 None:intergenic 60.0%
GCAGCTCAGCTGGCGAATCA+TGG + chr4_4:33692119-33692138 Msa0678260:CDS 60.0%
! GATCATGCCGGTGGCTCTGC+TGG + chr4_4:33691489-33691508 Msa0678260:CDS 65.0%
AGCAGACCCAGCAGAGCCAC+CGG - chr4_4:33691499-33691518 None:intergenic 65.0%
CACAACTGAGGCAGCCACGG+CGG - chr4_4:33692030-33692049 None:intergenic 65.0%
GGCAGCCACGGCGGCATTTG+CGG - chr4_4:33692021-33692040 None:intergenic 70.0%
CGCCGTGGCTGCCTCAGTTG+TGG + chr4_4:33692028-33692047 Msa0678260:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 33689525 33693506 33689525 ID=Msa0678260;Name=Msa0678260
chr4_4 mRNA 33689525 33693506 33689525 ID=Msa0678260-mRNA-1;Parent=Msa0678260;Name=Msa0678260-mRNA-1;_AED=0.02;_eAED=0.02;_QI=585|1|1|1|0.75|0.6|5|276|671
chr4_4 exon 33689525 33689726 33689525 ID=Msa0678260-mRNA-1:exon:8144;Parent=Msa0678260-mRNA-1
chr4_4 exon 33690456 33690889 33690456 ID=Msa0678260-mRNA-1:exon:8145;Parent=Msa0678260-mRNA-1
chr4_4 exon 33690985 33692212 33690985 ID=Msa0678260-mRNA-1:exon:8146;Parent=Msa0678260-mRNA-1
chr4_4 exon 33692328 33692474 33692328 ID=Msa0678260-mRNA-1:exon:8147;Parent=Msa0678260-mRNA-1
chr4_4 exon 33692641 33693506 33692641 ID=Msa0678260-mRNA-1:exon:8148;Parent=Msa0678260-mRNA-1
chr4_4 five_prime_UTR 33689525 33689726 33689525 ID=Msa0678260-mRNA-1:five_prime_utr;Parent=Msa0678260-mRNA-1
chr4_4 five_prime_UTR 33690456 33690838 33690456 ID=Msa0678260-mRNA-1:five_prime_utr;Parent=Msa0678260-mRNA-1
chr4_4 CDS 33690839 33690889 33690839 ID=Msa0678260-mRNA-1:cds;Parent=Msa0678260-mRNA-1
chr4_4 CDS 33690985 33692212 33690985 ID=Msa0678260-mRNA-1:cds;Parent=Msa0678260-mRNA-1
chr4_4 CDS 33692328 33692474 33692328 ID=Msa0678260-mRNA-1:cds;Parent=Msa0678260-mRNA-1
chr4_4 CDS 33692641 33693230 33692641 ID=Msa0678260-mRNA-1:cds;Parent=Msa0678260-mRNA-1
chr4_4 three_prime_UTR 33693231 33693506 33693231 ID=Msa0678260-mRNA-1:three_prime_utr;Parent=Msa0678260-mRNA-1
Gene Sequence

>Msa0678260

ATGTTTAAATTTTCTTGTTTTCATATTAATGCCCAAGGCAACAAGACAAAGAAAATAGCTAAATCTTCAACTGAAGCAATGGCAAAAGCTTTGAGAGATAGTTCCAAAAATCCAGTCGGTAAAGATTCGCCTATCCCTACAGGCTTAAATTCACCACTTTCAAAACAGCAACCACGTAAACTAATGAATATCTCTGAGAATGATGTTCTCGACCAGGTTTCAGTTGAGCACATTGGTAGATTAGAGGATTTCAATAGTAAGTTTTGCATTGAATTCGACAAAAAAGTTCGCCAAACTGGGCGTATGAGGAAAAGTCAGTCGGAAAGTGTGCTTTTTCAAGGCATAACCGAGGGTGATCAAGATCTGGGGTTTTCCAAAAGCCGCTATGACTCACCAAATTCAATTGGCAGCTCTAATGATCAATCCAAAACAATTTCCAGCTTTGGGTTTCAAGTCATCCCTAGCTGTGACAATGAAGGCTCACTTTTTTCAATAGGAGATCGGACACCTTCCGATAAAGATGCTCGTGAAAATTCTGATACTCCACTATCAGGCGATCATGCCGGTGGCTCTGCTGGGTCTGCTTACCAGACTTCTGGTCCCTGTACGCCAACTTTAAGAAAGTCACGTTCTTTGCCAAATATCAAAGCTTCTACGCTTTCTTCCACAAATAACCATGCTTTTAAACATGCATCTTCAATTTCAAGATCTTCTGATGATCTTTGTGCTTTAGGCTTAAGGAAGAAAGAGGTGTTCATCAATGTGTCTTATGATCAAAGAGGGGAAACTCAAGAAAGAGAAAGTGGCATGGAAAAAACTGAAGATAATCATATGGACAGATACTTCGATGATGGTTTTGATTCTCATCTACTTTCCGGCTTACAAAAGGACTGGACAATGCCAATTACAGATGATATTACTGATGCCGAACCCCTTCAAGGAGATTCCTCGAGTGAGTTTCCTAACAAGGATTTTAAGGTTAAGCGGATTGAGGATTGGGTGATCGGTCTGCAGCATTGTGGACCTCCTCTCGAGGATATAACTGAATTGCCAGAATCTGTTGATCCTAAAGTTGATATTAACACCGCAAATGCCGCCGTGGCTGCCTCAGTTGTGGATCATAAGACCACTCCAGGAATGGAAACAGCTAAAAGATATATATCTTCTTTAACTGCGAATGCCACTGCAGCTCAGCTGGCGAATCATGGGTTGGCTGTGATCCCCTTTTTGAGTGCATTCGTGAGTTTGAAGGTGCTCAATTTGTCCGGAAACGCAATCGTAAGGATAACTGCTGGTACTCTTCCTCAAGGACTTCACACATTAAATTTGTCAAAAAACAATATCTCCACTATAGAGGGATTACGTGAACTTACTCGGCTTCGTGTCCTAGACCTCAGCTACAACCGTATACTAAGAATTGGACATGGTTTGGCGTCCTGTTCTTCTCTAAAGGAGCTGTACCTGGCTGGAAACAAGATTGGTGAAGTCGAGGGTCTGCACCGCCTGCTGAAACTAAGCATCCTGGATATCCGTTTTAACAAGATTTCAACTGCCAAATGTCTTGGACAACTTGCAGCCAACTATAATTCTTTGCTAGCCATCAACTTGGAAGGGAACCCTTGCCAGAAAAATGTTGGAGATGAACAAATTAAGAAATATCTGCAAAGCCTTCTTCCCCATCTTGTCTACTACAATCGGCAGCCATTCAAAGCAAATGGTTTGAAGGACGGTGGGGATCGTGCACTTCGATTAGGAATGAATTCACAACAGTTTGATCGCAGTCTTAGAGTCGATCGCAAGTCTACAAGGAAGGGACCATCATCTACTCGGAGGTCATCTGCTGTGTCCTCACCAAAACTGTCCAAAGGAAAGCAAGCCCAGCTCCCACCAATCAGAACCAAAACATCAACACAAAGTCGCCATCATTTTGATTCTCCCAACAAACCGTTGAACTTGAATTCAGGGCACTTCATGCGCAAGAGTCGCAGCGAGAGTACTCTACTTGGAGCTTTGTAA
Protein sequence

>Msa0678260

MFKFSCFHINAQGNKTKKIAKSSTEAMAKALRDSSKNPVGKDSPIPTGLNSPLSKQQPRKLMNISENDVLDQVSVEHIGRLEDFNSKFCIEFDKKVRQTGRMRKSQSESVLFQGITEGDQDLGFSKSRYDSPNSIGSSNDQSKTISSFGFQVIPSCDNEGSLFSIGDRTPSDKDARENSDTPLSGDHAGGSAGSAYQTSGPCTPTLRKSRSLPNIKASTLSSTNNHAFKHASSISRSSDDLCALGLRKKEVFINVSYDQRGETQERESGMEKTEDNHMDRYFDDGFDSHLLSGLQKDWTMPITDDITDAEPLQGDSSSEFPNKDFKVKRIEDWVIGLQHCGPPLEDITELPESVDPKVDINTANAAVAASVVDHKTTPGMETAKRYISSLTANATAAQLANHGLAVIPFLSAFVSLKVLNLSGNAIVRITAGTLPQGLHTLNLSKNNISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKIGEVEGLHRLLKLSILDIRFNKISTAKCLGQLAANYNSLLAINLEGNPCQKNVGDEQIKKYLQSLLPHLVYYNRQPFKANGLKDGGDRALRLGMNSQQFDRSLRVDRKSTRKGPSSTRRSSAVSSPKLSKGKQAQLPPIRTKTSTQSRHHFDSPNKPLNLNSGHFMRKSRSESTLLGAL*