AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0599260

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0599260 MtrunA17_Chr4g0023131 95.678 671 24 3 1 670 1 667 0.0 1282
Msa0599260 MtrunA17_Chr3g0115891 53.600 250 107 2 328 569 358 606 4.69e-77 259
Msa0599260 MtrunA17_Chr5g0426251 50.000 254 111 4 328 570 337 585 1.24e-68 236
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0599260 AT4G03260.1 45.042 706 316 21 1 666 1 674 9.05e-157 468
Msa0599260 AT4G03260.4 45.042 706 316 21 1 666 1 674 9.05e-157 468
Msa0599260 AT4G03260.3 45.042 706 316 21 1 666 1 674 9.05e-157 468
Msa0599260 AT4G03260.2 45.042 706 316 21 1 666 1 674 9.05e-157 468
Msa0599260 AT1G78230.1 49.818 275 125 3 326 592 365 634 5.04e-74 252
Msa0599260 AT5G22320.1 32.174 230 132 7 369 591 69 281 2.05e-15 79.7
Msa0599260 AT5G22320.2 32.474 194 111 5 409 591 81 265 3.50e-11 66.2

Find 200 sgRNAs with CRISPR-Local

Find 279 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACTAACCGATTGCGTTTC+CGG 0.120020 4_2:-38391749 None:intergenic
TGCTTTCCTTTGGACAGTTT+TGG 0.229473 4_2:-38392620 None:intergenic
TGGTTCTGATTGGTGGGAGC+TGG 0.234101 4_2:-38392646 None:intergenic
AGCGTAGAAGCTTTGATATT+TGG 0.238230 4_2:-38391124 None:intergenic
GTCCCAGTACGCCAACTTTA+AGG 0.242108 4_2:+38391086 Msa0599260:CDS
TTGTTAAAACATTTGATTCT+TGG 0.248043 4_2:+38392912 Msa0599260:three_prime_UTR
CCCAAAGCTGGAAATCGTTT+TGG 0.250794 4_2:-38390912 None:intergenic
TAGAAAATTGAATGAATAAA+AGG 0.253390 4_2:+38389129 Msa0599260:five_prime_UTR
TTAGAGCTGCCAATTGAATT+TGG 0.255967 4_2:-38390881 None:intergenic
TATTGTTGCGAGAATGCTTC+TGG 0.256362 4_2:-38390258 None:intergenic
TTTGATTCCCATCTACTTTC+CGG 0.257400 4_2:+38391340 Msa0599260:CDS
ACTCACGAATGCACTCAAAA+AGG 0.259414 4_2:-38391707 None:intergenic
AGTAGCAAATTCACGGTCTT+TGG 0.269342 4_2:+38390280 Msa0599260:five_prime_UTR
GCGACTTTGGGTTGATGTTT+TGG 0.281796 4_2:-38392666 None:intergenic
ATCTTTACTGACTGAATGTT+TGG 0.285699 4_2:-38390591 None:intergenic
ACGGTCTTTGGTTAGGCTTC+TGG 0.286309 4_2:+38390292 Msa0599260:five_prime_UTR
TTAACCTTAAAATCCTTGTT+AGG 0.293999 4_2:-38391445 None:intergenic
ACTTTAGGATCAACAGATTC+AGG 0.299804 4_2:-38391535 None:intergenic
CCAAAACGATTTCCAGCTTT+GGG 0.305165 4_2:+38390912 Msa0599260:CDS
TGTAGATTGCGTAGCATTGC+AGG 0.306298 4_2:+38389160 Msa0599260:five_prime_UTR
ATGTGTCTTATGATCAAATA+GGG 0.309262 4_2:+38391248 Msa0599260:CDS
CTATTCTCGCACCTCTAAAA+AGG 0.310594 4_2:+38390099 Msa0599260:five_prime_UTR
GTTGGATTGTCCGTTGATTA+TGG 0.310880 4_2:+38390211 Msa0599260:five_prime_UTR
TCACTTATATCATCTGTAAT+TGG 0.315274 4_2:-38391385 None:intergenic
GAGCTGGGCTTGCTTTCCTT+TGG 0.323922 4_2:-38392630 None:intergenic
TTCAAACCATTTGCTTTGAA+TGG 0.330254 4_2:-38392470 None:intergenic
CGCAGCGAGAGTACTCTTCT+TGG 0.330294 4_2:+38392752 Msa0599260:CDS
TCCAAAACGATTTCCAGCTT+TGG 0.331023 4_2:+38390911 Msa0599260:CDS
CATGTCCAATTCTTAGTATA+CGG 0.332226 4_2:-38392003 None:intergenic
AATGTGTCTTATGATCAAAT+AGG 0.333969 4_2:+38391247 Msa0599260:CDS
AATCAAAATGATGGCGACTT+TGG 0.339358 4_2:-38392679 None:intergenic
AACATGCATCTTCAATTTCA+AGG 0.340067 4_2:+38391173 Msa0599260:CDS
TGGTGAGTCATAGCGGCTTT+TGG 0.343968 4_2:-38390861 None:intergenic
ATCAAAATGATGGCGACTTT+GGG 0.344484 4_2:-38392678 None:intergenic
TTACCTTTGTCTTGTTGCCT+TGG 0.349898 4_2:-38390425 None:intergenic
TACCTTTGTCTTGTTGCCTT+GGG 0.361755 4_2:-38390424 None:intergenic
GGTTAAGCGGATTGAGGATT+GGG 0.365508 4_2:+38391462 Msa0599260:CDS
AAACCGTTGAACTTGAATTC+AGG 0.370581 4_2:+38392710 Msa0599260:CDS
GATCATGCTGGTGGCTCTGC+TGG 0.370639 4_2:+38391043 Msa0599260:CDS
TGAGCACATTGGTAGATTAG+AGG 0.377017 4_2:+38390712 Msa0599260:CDS
GGCGTCCTGTTCTTCTCTAA+AGG 0.379103 4_2:+38392199 Msa0599260:CDS
GGCTCTGCTTACCAGACTTC+GGG 0.381568 4_2:+38391064 Msa0599260:CDS
GCGGTGTTAATATCAACTTT+AGG 0.383955 4_2:-38391550 None:intergenic
GGCAGCCACGGCGGCATTTG+CGG 0.385591 4_2:-38391569 None:intergenic
TGCAAGTTGTCCAAGACATT+TGG 0.391987 4_2:-38392321 None:intergenic
GGGGATCGTGCAGTTCGATT+AGG 0.396337 4_2:+38392500 Msa0599260:CDS
AATGCAATTAATTTCAATGA+TGG 0.404481 4_2:+38393050 Msa0599260:three_prime_UTR
GGTTCTGATTGGTGGGAGCT+GGG 0.406284 4_2:-38392645 None:intergenic
AACCGAGGGTGATCAAGATC+TGG 0.408569 4_2:+38390832 Msa0599260:CDS
TACAACCGTATACTAAGAAT+TGG 0.413209 4_2:+38391998 Msa0599260:CDS
CAAATTCACGGTCTTTGGTT+AGG 0.415180 4_2:+38390285 Msa0599260:five_prime_UTR
TTTGTAAGCCGGAAAGTAGA+TGG 0.417742 4_2:-38391348 None:intergenic
AATTCTGATACTCCACTATC+AGG 0.419268 4_2:+38391019 Msa0599260:CDS
GCAGCTCAGCTGGCGAATCA+TGG 0.419292 4_2:+38391670 Msa0599260:CDS
TGAACAGCATAGATTATTGT+TGG 0.422685 4_2:+38390323 Msa0599260:five_prime_UTR
AAACAATATCTCCACTATAG+AGG 0.423035 4_2:+38391934 Msa0599260:CDS
GGAACTATCTCGCAAAGCTT+TGG 0.423695 4_2:-38390570 None:intergenic
CAGTTGAAATCTTGTTAAAA+CGG 0.426413 4_2:-38392298 None:intergenic
CTTCCTTAAAGTTGGCGTAC+TGG 0.432258 4_2:-38391089 None:intergenic
TTCCTTAAAGTTGGCGTACT+GGG 0.432724 4_2:-38391088 None:intergenic
GTGGTGAATTTAAGCTTGTA+GGG 0.436326 4_2:-38390622 None:intergenic
GCGTACTGGGACCCGAAGTC+TGG 0.438192 4_2:-38391075 None:intergenic
CGGCAGCCATTCAAAGCAAA+TGG 0.442664 4_2:+38392464 Msa0599260:CDS
CCAGCATGATCGCCTGATAG+TGG 0.447001 4_2:-38391031 None:intergenic
CACTCGAGGAATCTCCTTGA+AGG 0.448953 4_2:-38391417 None:intergenic
AGGTTAAGCGGATTGAGGAT+TGG 0.449196 4_2:+38391461 Msa0599260:CDS
TTGAAGGTGCTCAATTTGTC+CGG 0.453051 4_2:+38391730 Msa0599260:CDS
GAATGCCACTGCAGCTCAGC+TGG 0.454505 4_2:+38391660 Msa0599260:CDS
AGTGGTGAATTTAAGCTTGT+AGG 0.454653 4_2:-38390623 None:intergenic
ATTTCAACTGCCAAATGTCT+TGG 0.456354 4_2:+38392311 Msa0599260:CDS
CAGCTCCTTTAGAGAAGAAC+AGG 0.456601 4_2:-38392204 None:intergenic
TTCGCCAAACTGGGCGTATG+AGG 0.459263 4_2:+38390774 Msa0599260:CDS
TTCTCTAAAGGAGCTGTACC+TGG 0.462475 4_2:+38392211 Msa0599260:CDS
TGGCTCTGCTTACCAGACTT+CGG 0.463220 4_2:+38391063 Msa0599260:CDS
CCCATCTTGTCTACTACAAT+CGG 0.468057 4_2:+38392444 Msa0599260:CDS
GAACAAAGGCATCAGACATA+TGG 0.469276 4_2:+38390170 Msa0599260:five_prime_UTR
CTCGAGTGAGTTTCCTAACA+AGG 0.469915 4_2:+38391432 Msa0599260:CDS
GCATAGATTATTGTTGGTAG+TGG 0.469989 4_2:+38390329 Msa0599260:five_prime_UTR
AAGATGCATGTTTAAAAGCA+TGG 0.472280 4_2:-38391162 None:intergenic
TTGCAAATCGATTCGTTTGG+TGG 0.474407 4_2:+38392797 Msa0599260:three_prime_UTR
TCTTGTTAAAACGGATATCC+AGG 0.475904 4_2:-38392289 None:intergenic
TTCACGTAATCCCTCTATAG+TGG 0.476373 4_2:-38391945 None:intergenic
AGTGATGCTGAACCCCTTCA+AGG 0.476734 4_2:+38391403 Msa0599260:CDS
TCTACTTTCCGGCTTACAAA+AGG 0.477529 4_2:+38391351 Msa0599260:CDS
CTAAAGGAGCTGTACCTGGC+TGG 0.478201 4_2:+38392215 Msa0599260:CDS
GAGTGCATTCGTGAGTTTGA+AGG 0.479495 4_2:+38391714 Msa0599260:CDS
ATTGTTGCGAGAATGCTTCT+GGG 0.480996 4_2:-38390257 None:intergenic
ATCTCTGTGCTTTACGCTTG+AGG 0.481095 4_2:+38391206 Msa0599260:CDS
TATGACTCACCAAATTCAAT+TGG 0.482241 4_2:+38390872 Msa0599260:CDS
GGGCAGACAGATTGACAGGC+AGG 0.484359 4_2:+38389181 Msa0599260:five_prime_UTR
CGGATTGAGGATTGGGTGAT+CGG 0.486361 4_2:+38391469 Msa0599260:CDS
CCAGGATGCTTAGTTTCAGC+AGG 0.488416 4_2:-38392271 None:intergenic
AAAATAGTAAAAGAGAAAAG+AGG 0.490876 4_2:-38389265 None:intergenic
AATTTGTCCGGAAACGCAAT+CGG 0.491445 4_2:+38391742 Msa0599260:CDS
TTTAAAAGCATGGTTATTTG+CGG 0.491837 4_2:-38391152 None:intergenic
CACCAATCTTGTTTCCAGCC+AGG 0.492051 4_2:-38392229 None:intergenic
ATTCAAAGCAAATGGTTTGA+AGG 0.492489 4_2:+38392472 Msa0599260:CDS
GAAGCATAAAGCCACTTGTT+CGG 0.493993 4_2:-38392948 None:intergenic
TCTTCTTGGAGCTTTGTAAG+AGG 0.496197 4_2:+38392766 Msa0599260:exon
ATGGACAGATACTTCGATGA+TGG 0.497494 4_2:+38391316 Msa0599260:CDS
CAGCTCAGCTGGCGAATCAT+GGG 0.498295 4_2:+38391671 Msa0599260:CDS
AAAGAGGAGAGACTTGATGA+TGG 0.499180 4_2:-38389249 None:intergenic
AACCGTTGAACTTGAATTCA+GGG 0.500759 4_2:+38392711 Msa0599260:CDS
CAACAATAGTAGCAAATTCA+CGG 0.504291 4_2:+38390273 Msa0599260:five_prime_UTR
ACCGAGGGTGATCAAGATCT+GGG 0.504360 4_2:+38390833 Msa0599260:CDS
GCATTGCAAATCGATTCGTT+TGG 0.504482 4_2:+38392794 Msa0599260:three_prime_UTR
TGCAGGGCAGACAGATTGAC+AGG 0.509113 4_2:+38389177 Msa0599260:five_prime_UTR
TTCAAGTTCAACGGTTTGCT+AGG 0.510947 4_2:-38392704 None:intergenic
GAACGTGACTTCCTTAAAGT+TGG 0.513821 4_2:-38391097 None:intergenic
AACAATATCTCCACTATAGA+GGG 0.516643 4_2:+38391935 Msa0599260:CDS
GCCGATTGTAGTAGACAAGA+TGG 0.518424 4_2:-38392445 None:intergenic
TGCCCTGAATTCAAGTTCAA+CGG 0.522472 4_2:-38392713 None:intergenic
GATGACTTGAAACCCAAAGC+TGG 0.525822 4_2:-38390924 None:intergenic
AGTAGACAAGATGGGGAAGA+AGG 0.526354 4_2:-38392436 None:intergenic
TCATAAGATCACTCCAGGAA+TGG 0.533959 4_2:+38391603 Msa0599260:CDS
TACGGTTGTAGCTGAGGTCT+AGG 0.534252 4_2:-38391985 None:intergenic
TTGCTAGCTATCAACTTGGA+AGG 0.534814 4_2:+38392359 Msa0599260:CDS
GAATTTAAGCTTGTAGGGAT+AGG 0.535756 4_2:-38390617 None:intergenic
CCGATTGTAGTAGACAAGAT+GGG 0.537803 4_2:-38392444 None:intergenic
ATCCCTAGCTGTGACAATGA+AGG 0.538144 4_2:+38390944 Msa0599260:CDS
TTTCCGGCTTACAAAAGGAC+TGG 0.541032 4_2:+38391356 Msa0599260:CDS
GATCGCAAGTCTACAAGGAA+GGG 0.541207 4_2:+38392560 Msa0599260:CDS
ACTCGAGGAATCTCCTTGAA+GGG 0.541483 4_2:-38391416 None:intergenic
CCACTATCAGGCGATCATGC+TGG 0.542203 4_2:+38391031 Msa0599260:CDS
AGACAGATTGACAGGCAGGC+AGG 0.542914 4_2:+38389185 Msa0599260:five_prime_UTR
TTCTTTGCTAGCTATCAACT+TGG 0.544039 4_2:+38392355 Msa0599260:CDS
AGCTAGCAAAGAATTATAGT+TGG 0.545735 4_2:-38392345 None:intergenic
AGGGATTACGTGAACTTACT+CGG 0.548078 4_2:+38391954 Msa0599260:CDS
TCACGAGCATCTTTATCGGA+AGG 0.548718 4_2:-38390995 None:intergenic
CCCCAGATCTTGATCACCCT+CGG 0.550081 4_2:-38390834 None:intergenic
CGCCGTGGCTGCCTCAGTTG+TGG 0.550765 4_2:+38391579 Msa0599260:CDS
TAGTATGCTTCTATTTACAT+TGG 0.552071 4_2:+38392828 Msa0599260:three_prime_UTR
TTGTAAGCCGGAAAGTAGAT+GGG 0.553911 4_2:-38391347 None:intergenic
TAAATCTTCAACTGAAGCAA+TGG 0.554804 4_2:+38390547 Msa0599260:CDS
CCTGCTGAAACTAAGCATCC+TGG 0.555759 4_2:+38392271 Msa0599260:CDS
AAAGCAAATGGTTTGAAGGA+CGG 0.557095 4_2:+38392476 Msa0599260:CDS
TTAGTATACGGTTGTAGCTG+AGG 0.557096 4_2:-38391991 None:intergenic
ATCCACAACTGAGGCAGCCA+CGG 0.557824 4_2:-38391581 None:intergenic
TGCTAGCTATCAACTTGGAA+GGG 0.558643 4_2:+38392360 Msa0599260:CDS
GAAACTCAAGAAAGAGAAAG+TGG 0.558970 4_2:+38391271 Msa0599260:CDS
GTGGATCATAAGATCACTCC+AGG 0.559381 4_2:+38391598 Msa0599260:CDS
CGATCGCAAGTCTACAAGGA+AGG 0.562319 4_2:+38392559 Msa0599260:CDS
CCGTTGATTATGGCTAAGAG+TGG 0.563957 4_2:+38390221 Msa0599260:five_prime_UTR
GATGACCTCCGAGTAGATGA+TGG 0.564031 4_2:-38392584 None:intergenic
GAGTCGATCGCAAGTCTACA+AGG 0.567579 4_2:+38392555 Msa0599260:CDS
TGAGAATGATGTTCTCGACC+AGG 0.568953 4_2:+38390682 Msa0599260:CDS
TCAGCTGGCGAATCATGGGT+TGG 0.569593 4_2:+38391675 Msa0599260:CDS
GAGCCTTCATTGTCACAGCT+AGG 0.569609 4_2:-38390947 None:intergenic
CAATGTGCTCAACTGAAACC+TGG 0.569780 4_2:-38390700 None:intergenic
GTACTTTGTTGCCGAACAAG+TGG 0.570830 4_2:+38392937 Msa0599260:three_prime_UTR
TGCTAGGAGAATCAAAATGA+TGG 0.570946 4_2:-38392688 None:intergenic
TCGGAAAGTGTGCTTTGTCA+AGG 0.572103 4_2:+38390806 Msa0599260:CDS
CAAATGGTTTGAAGGACGGT+GGG 0.572624 4_2:+38392480 Msa0599260:CDS
ATAGTTTGAATTTGTTATAG+CGG 0.574740 4_2:-38390080 None:intergenic
TACCTGGCTGGAAACAAGAT+TGG 0.575352 4_2:+38392227 Msa0599260:CDS
ATTCGCCAGCTGAGCTGCAG+TGG 0.578019 4_2:-38391665 None:intergenic
AGCCTTCATTGTCACAGCTA+GGG 0.578432 4_2:-38390946 None:intergenic
AACAAGATTGGTGAAGTCGA+GGG 0.578646 4_2:+38392239 Msa0599260:CDS
AGATTGTGCCGTGTTTCAGT+TGG 0.580815 4_2:+38390193 Msa0599260:five_prime_UTR
ATCGCAAGTCTACAAGGAAG+GGG 0.587186 4_2:+38392561 Msa0599260:CDS
TTGAATTTGGTGAGTCATAG+CGG 0.606032 4_2:-38390868 None:intergenic
GTAGATTGCGTAGCATTGCA+GGG 0.606420 4_2:+38389161 Msa0599260:five_prime_UTR
AAACAAGATTGGTGAAGTCG+AGG 0.607377 4_2:+38392238 Msa0599260:CDS
CTCGAGGAATCTCCTTGAAG+GGG 0.609456 4_2:-38391415 None:intergenic
GGAAGGGGCCATCATCTACT+CGG 0.615084 4_2:+38392576 Msa0599260:CDS
CAGGTTTCAGTTGAGCACAT+TGG 0.618242 4_2:+38390701 Msa0599260:CDS
TCAAGAAAGAGAAAGTGGCA+TGG 0.623527 4_2:+38391276 Msa0599260:CDS
CGCCCAAGGCAACAAGACAA+AGG 0.624330 4_2:+38390422 Msa0599260:CDS
GGATGCTTAGTTTCAGCAGG+CGG 0.624979 4_2:-38392268 None:intergenic
CGGACAATCCAACTGAAACA+CGG 0.625493 4_2:-38390201 None:intergenic
TCCTCACCAAAACTGTCCAA+AGG 0.625540 4_2:+38392614 Msa0599260:CDS
GCAAATGGTTTGAAGGACGG+TGG 0.626539 4_2:+38392479 Msa0599260:CDS
CTATCAGGCGATCATGCTGG+TGG 0.628639 4_2:+38391034 Msa0599260:CDS
GAGACATTCATTAGTTTACG+TGG 0.631565 4_2:-38390659 None:intergenic
CGATTGTAGTAGACAAGATG+GGG 0.634882 4_2:-38392443 None:intergenic
TGTGTCTTATGATCAAATAG+GGG 0.637468 4_2:+38391249 Msa0599260:CDS
CTTTGTCAAGGCATAACCGA+GGG 0.638993 4_2:+38390818 Msa0599260:CDS
CACAACTGAGGCAGCCACGG+CGG 0.648440 4_2:-38391578 None:intergenic
ACAGGCAGGCAGGAAACTAG+AGG 0.650574 4_2:+38389195 Msa0599260:five_prime_UTR
TTGTTGCGAGAATGCTTCTG+GGG 0.651554 4_2:-38390256 None:intergenic
TAACACCGCAAATGCCGCCG+TGG 0.652499 4_2:+38391564 Msa0599260:CDS
GTGATCGGTCTGCAGCATTG+TGG 0.653531 4_2:+38391484 Msa0599260:CDS
AAGGTGTGGGGTGATGAAGG+AGG 0.654404 4_2:+38390118 Msa0599260:five_prime_UTR
TCAGTTATATCCTCGAGAGG+AGG 0.658168 4_2:-38391508 None:intergenic
TTTACGCTTGAGGAAGCAAG+AGG 0.659476 4_2:+38391216 Msa0599260:CDS
AATAGAAGCATACTAAAACA+TGG 0.668411 4_2:-38392820 None:intergenic
CCACTCTTAGCCATAATCAA+CGG 0.671013 4_2:-38390221 None:intergenic
GCATTGTGGACCTCCTCTCG+AGG 0.671495 4_2:+38391498 Msa0599260:CDS
AAATGGTTTGAAGGACGGTG+GGG 0.673778 4_2:+38392481 Msa0599260:CDS
CGTATACTAAGAATTGGACA+TGG 0.673937 4_2:+38392004 Msa0599260:CDS
CTTGTTAGGAAACTCACTCG+AGG 0.675608 4_2:-38391431 None:intergenic
GCGTATGAGGAAAAGTCAGT+CGG 0.678762 4_2:+38390787 Msa0599260:CDS
AATTCAGTTATATCCTCGAG+AGG 0.680076 4_2:-38391511 None:intergenic
TTTAATGTGTGAAGTCCTCG+AGG 0.686694 4_2:-38391902 None:intergenic
CCGAGGGTGATCAAGATCTG+GGG 0.705913 4_2:+38390834 Msa0599260:CDS
AGGGGCCATCATCTACTCGG+AGG 0.724171 4_2:+38392579 Msa0599260:CDS
ACTGCTGGTACTCTTCCTCG+AGG 0.729885 4_2:+38391887 Msa0599260:CDS
GCTTTGTCAAGGCATAACCG+AGG 0.731993 4_2:+38390817 Msa0599260:CDS
GATCTTATGATCCACAACTG+AGG 0.735088 4_2:-38391590 None:intergenic
TTTCAACTAGGAGAATCCCG+AGG 0.758017 4_2:-38390037 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAGCTAATTTTAATTTA+TGG + chr4_2:38389497-38389516 Msa0599260:intron 10.0%
!! TAGAAAATTGAATGAATAAA+AGG + chr4_2:38389129-38389148 Msa0599260:five_prime_UTR 15.0%
!! AATTTATCTGATTAAAATTC+AGG + chr4_2:38389408-38389427 Msa0599260:intron 15.0%
!!! GATTGATTTTTTATTTATGT+CGG + chr4_2:38389794-38389813 Msa0599260:intron 15.0%
!!! ATTGATTTTTTATTTATGTC+GGG + chr4_2:38389795-38389814 Msa0599260:intron 15.0%
!!! TTAATTTTCCTTAAATTATG+TGG + chr4_2:38389822-38389841 Msa0599260:intron 15.0%
!!! AAATAAATTCTTTTTCAACT+AGG - chr4_2:38390052-38390071 None:intergenic 15.0%
!! AAAATAGTAAAAGAGAAAAG+AGG - chr4_2:38389268-38389287 None:intergenic 20.0%
!!! GTAAGTTCTTTCATTTTTTA+TGG + chr4_2:38389293-38389312 Msa0599260:intron 20.0%
!!! AATTTTGAGAATATTGAAGT+TGG + chr4_2:38389460-38389479 Msa0599260:intron 20.0%
!!! TTAATTTTGCTTAAATTCTG+TGG + chr4_2:38389662-38389681 Msa0599260:intron 20.0%
!!! TTGATTTTTTATTTATGTCG+GGG + chr4_2:38389796-38389815 Msa0599260:intron 20.0%
!! ATATACAACCACATAATTTA+AGG - chr4_2:38389833-38389852 None:intergenic 20.0%
!! AAAAAGAATTTATTTCACTC+TGG + chr4_2:38390057-38390076 Msa0599260:five_prime_UTR 20.0%
!!! ATAGTTTGAATTTGTTATAG+CGG - chr4_2:38390083-38390102 None:intergenic 20.0%
!! AAAAGAATTCAAAAGGAATA+AGG - chr4_2:38391853-38391872 None:intergenic 20.0%
!! ACTGAAAAAAAGAATTCAAA+AGG - chr4_2:38391860-38391879 None:intergenic 20.0%
!!! TTGAATTCTTTTTTTCAGTA+AGG + chr4_2:38391861-38391880 Msa0599260:intron 20.0%
!! AATACAATGTCAACAATTAA+TGG - chr4_2:38392109-38392128 None:intergenic 20.0%
!! TTGTTAAAACATTTGATTCT+TGG + chr4_2:38392912-38392931 Msa0599260:three_prime_UTR 20.0%
!! AATGCAATTAATTTCAATGA+TGG + chr4_2:38393050-38393069 Msa0599260:three_prime_UTR 20.0%
!!! AGATTGATTTGTGTTTTTGT+GGG + chr4_2:38389637-38389656 Msa0599260:intron 25.0%
!!! ATCTCACAATTTGATTTTTG+AGG + chr4_2:38389722-38389741 Msa0599260:intron 25.0%
!!! TGATTTTTTATTTATGTCGG+GGG + chr4_2:38389797-38389816 Msa0599260:intron 25.0%
! TATGTGGTTGTATATGTTAA+TGG + chr4_2:38389838-38389857 Msa0599260:intron 25.0%
!!! TTTGTCTTTTAACTATACTC+TGG + chr4_2:38389938-38389957 Msa0599260:intron 25.0%
!!! TGATGTTGTTTTATTCAAAC+AGG + chr4_2:38389990-38390009 Msa0599260:intron 25.0%
! AGTATAGACTTTGTATAACT+TGG + chr4_2:38390468-38390487 Msa0599260:intron 25.0%
!! TTTAAAAGCATGGTTATTTG+CGG - chr4_2:38391155-38391174 None:intergenic 25.0%
! AATGTGTCTTATGATCAAAT+AGG + chr4_2:38391247-38391266 Msa0599260:CDS 25.0%
! ATGTGTCTTATGATCAAATA+GGG + chr4_2:38391248-38391267 Msa0599260:CDS 25.0%
! GGAAAAAACTGATAATCATA+TGG + chr4_2:38391297-38391316 Msa0599260:CDS 25.0%
! TCACTTATATCATCTGTAAT+TGG - chr4_2:38391388-38391407 None:intergenic 25.0%
! TTAACCTTAAAATCCTTGTT+AGG - chr4_2:38391448-38391467 None:intergenic 25.0%
! AAATAAAGAAGAAACGTTGA+CGG - chr4_2:38392148-38392167 None:intergenic 25.0%
! CAGTTGAAATCTTGTTAAAA+CGG - chr4_2:38392301-38392320 None:intergenic 25.0%
!! AATAGAAGCATACTAAAACA+TGG - chr4_2:38392823-38392842 None:intergenic 25.0%
! TAGTATGCTTCTATTTACAT+TGG + chr4_2:38392828-38392847 Msa0599260:three_prime_UTR 25.0%
!!! GAGATTGATTTGTGTTTTTG+TGG + chr4_2:38389636-38389655 Msa0599260:intron 30.0%
!!! GATTGATTTGTGTTTTTGTG+GGG + chr4_2:38389638-38389657 Msa0599260:intron 30.0%
!!! ATTGATTTGTGTTTTTGTGG+GGG + chr4_2:38389639-38389658 Msa0599260:intron 30.0%
!!! GATTTTTTATTTATGTCGGG+GGG + chr4_2:38389798-38389817 Msa0599260:intron 30.0%
ATACACAAACGGATAAATTG+CGG - chr4_2:38389867-38389886 None:intergenic 30.0%
!! GTTGTTTTATTCAAACAGGT+TGG + chr4_2:38389994-38390013 Msa0599260:intron 30.0%
CAACAATAGTAGCAAATTCA+CGG + chr4_2:38390273-38390292 Msa0599260:five_prime_UTR 30.0%
TGAACAGCATAGATTATTGT+TGG + chr4_2:38390323-38390342 Msa0599260:five_prime_UTR 30.0%
TAGACTTTGTATAACTTGGT+TGG + chr4_2:38390472-38390491 Msa0599260:intron 30.0%
GCTTAAAGTCAAAATAATCC+AGG - chr4_2:38390503-38390522 None:intergenic 30.0%
TAAATCTTCAACTGAAGCAA+TGG + chr4_2:38390547-38390566 Msa0599260:CDS 30.0%
! ATCTTTACTGACTGAATGTT+TGG - chr4_2:38390594-38390613 None:intergenic 30.0%
TATGACTCACCAAATTCAAT+TGG + chr4_2:38390872-38390891 Msa0599260:CDS 30.0%
!!! CACTTTTTTCAATAGGAGAT+CGG + chr4_2:38390969-38390988 Msa0599260:CDS 30.0%
! ATTTTCACGAGCATCTTTAT+CGG - chr4_2:38391002-38391021 None:intergenic 30.0%
AAGATGCATGTTTAAAAGCA+TGG - chr4_2:38391165-38391184 None:intergenic 30.0%
AACATGCATCTTCAATTTCA+AGG + chr4_2:38391173-38391192 Msa0599260:CDS 30.0%
TGTGTCTTATGATCAAATAG+GGG + chr4_2:38391249-38391268 Msa0599260:CDS 30.0%
! GTTTCCTAACAAGGATTTTA+AGG + chr4_2:38391441-38391460 Msa0599260:CDS 30.0%
!!! ACAAGGATTTTAAGGTTAAG+CGG + chr4_2:38391449-38391468 Msa0599260:CDS 30.0%
! GTTGTGACAATCTTTAACTT+TGG + chr4_2:38391807-38391826 Msa0599260:intron 30.0%
AAACAATATCTCCACTATAG+AGG + chr4_2:38391934-38391953 Msa0599260:CDS 30.0%
AACAATATCTCCACTATAGA+GGG + chr4_2:38391935-38391954 Msa0599260:CDS 30.0%
TACAACCGTATACTAAGAAT+TGG + chr4_2:38391998-38392017 Msa0599260:CDS 30.0%
CATGTCCAATTCTTAGTATA+CGG - chr4_2:38392006-38392025 None:intergenic 30.0%
! AACACAGATTAGTTCAAGTA+TGG - chr4_2:38392060-38392079 None:intergenic 30.0%
! AATACTTACCTCTTTTGCAA+AGG + chr4_2:38392173-38392192 Msa0599260:intron 30.0%
AGCTAGCAAAGAATTATAGT+TGG - chr4_2:38392348-38392367 None:intergenic 30.0%
! TTCAAACCATTTGCTTTGAA+TGG - chr4_2:38392473-38392492 None:intergenic 30.0%
ATTCAAAGCAAATGGTTTGA+AGG + chr4_2:38392472-38392491 Msa0599260:CDS 30.0%
ACCAAGCATACATACACAAA+CGG - chr4_2:38389878-38389897 None:intergenic 35.0%
ACAACATCAAGTATCAGAGT+TGG - chr4_2:38389979-38389998 None:intergenic 35.0%
! CTTCGTTTTACGTAGAACAA+AGG + chr4_2:38390156-38390175 Msa0599260:five_prime_UTR 35.0%
! GCATAGATTATTGTTGGTAG+TGG + chr4_2:38390329-38390348 Msa0599260:five_prime_UTR 35.0%
! TGTTTTCATATTAACGCCCA+AGG + chr4_2:38390408-38390427 Msa0599260:CDS 35.0%
! ATAACTTGGTTGGTATTACC+TGG + chr4_2:38390482-38390501 Msa0599260:intron 35.0%
GAATTTAAGCTTGTAGGGAT+AGG - chr4_2:38390620-38390639 None:intergenic 35.0%
GTGGTGAATTTAAGCTTGTA+GGG - chr4_2:38390625-38390644 None:intergenic 35.0%
AGTGGTGAATTTAAGCTTGT+AGG - chr4_2:38390626-38390645 None:intergenic 35.0%
! GAGACATTCATTAGTTTACG+TGG - chr4_2:38390662-38390681 None:intergenic 35.0%
ACAAAAAAGTTCGCCAAACT+GGG + chr4_2:38390765-38390784 Msa0599260:CDS 35.0%
! TTGAATTTGGTGAGTCATAG+CGG - chr4_2:38390871-38390890 None:intergenic 35.0%
TTAGAGCTGCCAATTGAATT+TGG - chr4_2:38390884-38390903 None:intergenic 35.0%
!!! GAAGGCTCACTTTTTTCAAT+AGG + chr4_2:38390962-38390981 Msa0599260:CDS 35.0%
AATTCTGATACTCCACTATC+AGG + chr4_2:38391019-38391038 Msa0599260:CDS 35.0%
! AGCGTAGAAGCTTTGATATT+TGG - chr4_2:38391127-38391146 None:intergenic 35.0%
GAAACTCAAGAAAGAGAAAG+TGG + chr4_2:38391271-38391290 Msa0599260:CDS 35.0%
TTTGATTCCCATCTACTTTC+CGG + chr4_2:38391340-38391359 Msa0599260:CDS 35.0%
!!! TTTTAAGGTTAAGCGGATTG+AGG + chr4_2:38391456-38391475 Msa0599260:CDS 35.0%
AATTCAGTTATATCCTCGAG+AGG - chr4_2:38391514-38391533 None:intergenic 35.0%
!! ACTTTAGGATCAACAGATTC+AGG - chr4_2:38391538-38391557 None:intergenic 35.0%
! GCGGTGTTAATATCAACTTT+AGG - chr4_2:38391553-38391572 None:intergenic 35.0%
! TTTTCAGTAAGGATAACTGC+TGG + chr4_2:38391872-38391891 Msa0599260:intron 35.0%
CGTATACTAAGAATTGGACA+TGG + chr4_2:38392004-38392023 Msa0599260:CDS 35.0%
GGACATGGTAAAAGAATTTC+TGG + chr4_2:38392019-38392038 Msa0599260:intron 35.0%
! TTACCTCTTTTGCAAAGGTT+TGG + chr4_2:38392178-38392197 Msa0599260:intron 35.0%
TCTTGTTAAAACGGATATCC+AGG - chr4_2:38392292-38392311 None:intergenic 35.0%
ATTTCAACTGCCAAATGTCT+TGG + chr4_2:38392311-38392330 Msa0599260:CDS 35.0%
TTCTTTGCTAGCTATCAACT+TGG + chr4_2:38392355-38392374 Msa0599260:CDS 35.0%
! GTTCATCACCAACATTTTTC+TGG - chr4_2:38392394-38392413 None:intergenic 35.0%
AAAGCAAATGGTTTGAAGGA+CGG + chr4_2:38392476-38392495 Msa0599260:CDS 35.0%
!!! ATGTTTTGGTTCTGATTGGT+GGG - chr4_2:38392655-38392674 None:intergenic 35.0%
!!! GTTGATGTTTTGGTTCTGAT+TGG - chr4_2:38392659-38392678 None:intergenic 35.0%
! ATCAAAATGATGGCGACTTT+GGG - chr4_2:38392681-38392700 None:intergenic 35.0%
! AATCAAAATGATGGCGACTT+TGG - chr4_2:38392682-38392701 None:intergenic 35.0%
TGCTAGGAGAATCAAAATGA+TGG - chr4_2:38392691-38392710 None:intergenic 35.0%
AAACCGTTGAACTTGAATTC+AGG + chr4_2:38392710-38392729 Msa0599260:CDS 35.0%
AACCGTTGAACTTGAATTCA+GGG + chr4_2:38392711-38392730 Msa0599260:CDS 35.0%
AAAGAGGAGAGACTTGATGA+TGG - chr4_2:38389252-38389271 None:intergenic 40.0%
TCCGTTTGTGTATGTATGCT+TGG + chr4_2:38389874-38389893 Msa0599260:intron 40.0%
AACAGTATCAACCACAACTC+AGG - chr4_2:38389917-38389936 None:intergenic 40.0%
!! CAGGTTGGCATCTTTTTATG+CGG + chr4_2:38390009-38390028 Msa0599260:intron 40.0%
! CTTTTTATGCGGATTTGCCT+CGG + chr4_2:38390020-38390039 Msa0599260:five_prime_UTR 40.0%
! TTTTTATGCGGATTTGCCTC+GGG + chr4_2:38390021-38390040 Msa0599260:five_prime_UTR 40.0%
! CTATTCTCGCACCTCTAAAA+AGG + chr4_2:38390099-38390118 Msa0599260:five_prime_UTR 40.0%
!! GAACAAAGGCATCAGACATA+TGG + chr4_2:38390170-38390189 Msa0599260:five_prime_UTR 40.0%
! GTTGGATTGTCCGTTGATTA+TGG + chr4_2:38390211-38390230 Msa0599260:five_prime_UTR 40.0%
CCACTCTTAGCCATAATCAA+CGG - chr4_2:38390224-38390243 None:intergenic 40.0%
ATTGTTGCGAGAATGCTTCT+GGG - chr4_2:38390260-38390279 None:intergenic 40.0%
TATTGTTGCGAGAATGCTTC+TGG - chr4_2:38390261-38390280 None:intergenic 40.0%
AGTAGCAAATTCACGGTCTT+TGG + chr4_2:38390280-38390299 Msa0599260:five_prime_UTR 40.0%
CAAATTCACGGTCTTTGGTT+AGG + chr4_2:38390285-38390304 Msa0599260:five_prime_UTR 40.0%
! TACCTTTGTCTTGTTGCCTT+GGG - chr4_2:38390427-38390446 None:intergenic 40.0%
! TTACCTTTGTCTTGTTGCCT+TGG - chr4_2:38390428-38390447 None:intergenic 40.0%
!!! CGTGGTTGTTGTTTTGAAAG+TGG - chr4_2:38390644-38390663 None:intergenic 40.0%
TGAGCACATTGGTAGATTAG+AGG + chr4_2:38390712-38390731 Msa0599260:CDS 40.0%
GACAAAAAAGTTCGCCAAAC+TGG + chr4_2:38390764-38390783 Msa0599260:CDS 40.0%
TCCAAAACGATTTCCAGCTT+TGG + chr4_2:38390911-38390930 Msa0599260:CDS 40.0%
CCAAAACGATTTCCAGCTTT+GGG + chr4_2:38390912-38390931 Msa0599260:CDS 40.0%
TTCCTTAAAGTTGGCGTACT+GGG - chr4_2:38391091-38391110 None:intergenic 40.0%
GAACGTGACTTCCTTAAAGT+TGG - chr4_2:38391100-38391119 None:intergenic 40.0%
TCAAGAAAGAGAAAGTGGCA+TGG + chr4_2:38391276-38391295 Msa0599260:CDS 40.0%
ATGGACAGATACTTCGATGA+TGG + chr4_2:38391316-38391335 Msa0599260:CDS 40.0%
TTGTAAGCCGGAAAGTAGAT+GGG - chr4_2:38391350-38391369 None:intergenic 40.0%
TTTGTAAGCCGGAAAGTAGA+TGG - chr4_2:38391351-38391370 None:intergenic 40.0%
TCTACTTTCCGGCTTACAAA+AGG + chr4_2:38391351-38391370 Msa0599260:CDS 40.0%
GATCTTATGATCCACAACTG+AGG - chr4_2:38391593-38391612 None:intergenic 40.0%
TCATAAGATCACTCCAGGAA+TGG + chr4_2:38391603-38391622 Msa0599260:CDS 40.0%
!! CTTTTAGCTGTTTCCATTCC+TGG - chr4_2:38391619-38391638 None:intergenic 40.0%
TCACGAATGCACTCAAAAAG+GGG - chr4_2:38391708-38391727 None:intergenic 40.0%
CTCACGAATGCACTCAAAAA+GGG - chr4_2:38391709-38391728 None:intergenic 40.0%
ACTCACGAATGCACTCAAAA+AGG - chr4_2:38391710-38391729 None:intergenic 40.0%
!! TTGAAGGTGCTCAATTTGTC+CGG + chr4_2:38391730-38391749 Msa0599260:CDS 40.0%
AATTTGTCCGGAAACGCAAT+CGG + chr4_2:38391742-38391761 Msa0599260:CDS 40.0%
TTTAATGTGTGAAGTCCTCG+AGG - chr4_2:38391905-38391924 None:intergenic 40.0%
TTCACGTAATCCCTCTATAG+TGG - chr4_2:38391948-38391967 None:intergenic 40.0%
AGGGATTACGTGAACTTACT+CGG + chr4_2:38391954-38391973 Msa0599260:CDS 40.0%
TTAGTATACGGTTGTAGCTG+AGG - chr4_2:38391994-38392013 None:intergenic 40.0%
AAACAAGATTGGTGAAGTCG+AGG + chr4_2:38392238-38392257 Msa0599260:CDS 40.0%
AACAAGATTGGTGAAGTCGA+GGG + chr4_2:38392239-38392258 Msa0599260:CDS 40.0%
TGCAAGTTGTCCAAGACATT+TGG - chr4_2:38392324-38392343 None:intergenic 40.0%
TTGCTAGCTATCAACTTGGA+AGG + chr4_2:38392359-38392378 Msa0599260:CDS 40.0%
TGCTAGCTATCAACTTGGAA+GGG + chr4_2:38392360-38392379 Msa0599260:CDS 40.0%
AACCCTTGCCAGAAAAATGT+TGG + chr4_2:38392383-38392402 Msa0599260:CDS 40.0%
!! CACCAACATTTTTCTGGCAA+GGG - chr4_2:38392388-38392407 None:intergenic 40.0%
!! TCACCAACATTTTTCTGGCA+AGG - chr4_2:38392389-38392408 None:intergenic 40.0%
CGATTGTAGTAGACAAGATG+GGG - chr4_2:38392446-38392465 None:intergenic 40.0%
CCGATTGTAGTAGACAAGAT+GGG - chr4_2:38392447-38392466 None:intergenic 40.0%
CCCATCTTGTCTACTACAAT+CGG + chr4_2:38392444-38392463 Msa0599260:CDS 40.0%
! TGCTTTCCTTTGGACAGTTT+TGG - chr4_2:38392623-38392642 None:intergenic 40.0%
!!! GATGTTTTGGTTCTGATTGG+TGG - chr4_2:38392656-38392675 None:intergenic 40.0%
! TTCAAGTTCAACGGTTTGCT+AGG - chr4_2:38392707-38392726 None:intergenic 40.0%
! TGCCCTGAATTCAAGTTCAA+CGG - chr4_2:38392716-38392735 None:intergenic 40.0%
! TCTTCTTGGAGCTTTGTAAG+AGG + chr4_2:38392766-38392785 Msa0599260:exon 40.0%
!! GCATTGCAAATCGATTCGTT+TGG + chr4_2:38392794-38392813 Msa0599260:three_prime_UTR 40.0%
!! TTGCAAATCGATTCGTTTGG+TGG + chr4_2:38392797-38392816 Msa0599260:three_prime_UTR 40.0%
GAAGCATAAAGCCACTTGTT+CGG - chr4_2:38392951-38392970 None:intergenic 40.0%
TGTAGATTGCGTAGCATTGC+AGG + chr4_2:38389160-38389179 Msa0599260:five_prime_UTR 45.0%
GTAGATTGCGTAGCATTGCA+GGG + chr4_2:38389161-38389180 Msa0599260:five_prime_UTR 45.0%
AGTATCAACCACAACTCAGG+AGG - chr4_2:38389914-38389933 None:intergenic 45.0%
TTTCAACTAGGAGAATCCCG+AGG - chr4_2:38390040-38390059 None:intergenic 45.0%
! TCGCACCTCTAAAAAGGTGT+GGG + chr4_2:38390105-38390124 Msa0599260:five_prime_UTR 45.0%
! ATCACCCCACACCTTTTTAG+AGG - chr4_2:38390113-38390132 None:intergenic 45.0%
! AAAAAGGTGTGGGGTGATGA+AGG + chr4_2:38390115-38390134 Msa0599260:five_prime_UTR 45.0%
AGATTGTGCCGTGTTTCAGT+TGG + chr4_2:38390193-38390212 Msa0599260:five_prime_UTR 45.0%
CGGACAATCCAACTGAAACA+CGG - chr4_2:38390204-38390223 None:intergenic 45.0%
! CCGTTGATTATGGCTAAGAG+TGG + chr4_2:38390221-38390240 Msa0599260:five_prime_UTR 45.0%
TTGTTGCGAGAATGCTTCTG+GGG - chr4_2:38390259-38390278 None:intergenic 45.0%
GGAACTATCTCGCAAAGCTT+TGG - chr4_2:38390573-38390592 None:intergenic 45.0%
TGAGAATGATGTTCTCGACC+AGG + chr4_2:38390682-38390701 Msa0599260:CDS 45.0%
CAATGTGCTCAACTGAAACC+TGG - chr4_2:38390703-38390722 None:intergenic 45.0%
CAGGTTTCAGTTGAGCACAT+TGG + chr4_2:38390701-38390720 Msa0599260:CDS 45.0%
! TTTTCCTCATACGCCCAGTT+TGG - chr4_2:38390781-38390800 None:intergenic 45.0%
GCGTATGAGGAAAAGTCAGT+CGG + chr4_2:38390787-38390806 Msa0599260:CDS 45.0%
! TCGGAAAGTGTGCTTTGTCA+AGG + chr4_2:38390806-38390825 Msa0599260:CDS 45.0%
CTTTGTCAAGGCATAACCGA+GGG + chr4_2:38390818-38390837 Msa0599260:CDS 45.0%
! CCCAAAGCTGGAAATCGTTT+TGG - chr4_2:38390915-38390934 None:intergenic 45.0%
GATGACTTGAAACCCAAAGC+TGG - chr4_2:38390927-38390946 None:intergenic 45.0%
ATCCCTAGCTGTGACAATGA+AGG + chr4_2:38390944-38390963 Msa0599260:CDS 45.0%
AGCCTTCATTGTCACAGCTA+GGG - chr4_2:38390949-38390968 None:intergenic 45.0%
TCACGAGCATCTTTATCGGA+AGG - chr4_2:38390998-38391017 None:intergenic 45.0%
CTTCCTTAAAGTTGGCGTAC+TGG - chr4_2:38391092-38391111 None:intergenic 45.0%
ATCTCTGTGCTTTACGCTTG+AGG + chr4_2:38391206-38391225 Msa0599260:CDS 45.0%
TTTACGCTTGAGGAAGCAAG+AGG + chr4_2:38391216-38391235 Msa0599260:CDS 45.0%
TTTCCGGCTTACAAAAGGAC+TGG + chr4_2:38391356-38391375 Msa0599260:CDS 45.0%
! TGTCCAGTCCTTTTGTAAGC+CGG - chr4_2:38391362-38391381 None:intergenic 45.0%
ACTCGAGGAATCTCCTTGAA+GGG - chr4_2:38391419-38391438 None:intergenic 45.0%
CTTGTTAGGAAACTCACTCG+AGG - chr4_2:38391434-38391453 None:intergenic 45.0%
CTCGAGTGAGTTTCCTAACA+AGG + chr4_2:38391432-38391451 Msa0599260:CDS 45.0%
!! AGGTTAAGCGGATTGAGGAT+TGG + chr4_2:38391461-38391480 Msa0599260:CDS 45.0%
!! GGTTAAGCGGATTGAGGATT+GGG + chr4_2:38391462-38391481 Msa0599260:CDS 45.0%
TCAGTTATATCCTCGAGAGG+AGG - chr4_2:38391511-38391530 None:intergenic 45.0%
GTGGATCATAAGATCACTCC+AGG + chr4_2:38391598-38391617 Msa0599260:CDS 45.0%
GAGTGCATTCGTGAGTTTGA+AGG + chr4_2:38391714-38391733 Msa0599260:CDS 45.0%
CAACTAACCGATTGCGTTTC+CGG - chr4_2:38391752-38391771 None:intergenic 45.0%
ACGCCAAACCTTTGCAAAAG+AGG - chr4_2:38392184-38392203 None:intergenic 45.0%
! CAGCTCCTTTAGAGAAGAAC+AGG - chr4_2:38392207-38392226 None:intergenic 45.0%
! TTCTCTAAAGGAGCTGTACC+TGG + chr4_2:38392211-38392230 Msa0599260:CDS 45.0%
TACCTGGCTGGAAACAAGAT+TGG + chr4_2:38392227-38392246 Msa0599260:CDS 45.0%
AGTAGACAAGATGGGGAAGA+AGG - chr4_2:38392439-38392458 None:intergenic 45.0%
GCCGATTGTAGTAGACAAGA+TGG - chr4_2:38392448-38392467 None:intergenic 45.0%
CAAATGGTTTGAAGGACGGT+GGG + chr4_2:38392480-38392499 Msa0599260:CDS 45.0%
AAATGGTTTGAAGGACGGTG+GGG + chr4_2:38392481-38392500 Msa0599260:CDS 45.0%
GATCGCAAGTCTACAAGGAA+GGG + chr4_2:38392560-38392579 Msa0599260:CDS 45.0%
ATCGCAAGTCTACAAGGAAG+GGG + chr4_2:38392561-38392580 Msa0599260:CDS 45.0%
TCCTCACCAAAACTGTCCAA+AGG + chr4_2:38392614-38392633 Msa0599260:CDS 45.0%
!! TCCTTTGGACAGTTTTGGTG+AGG - chr4_2:38392618-38392637 None:intergenic 45.0%
!!! GCGACTTTGGGTTGATGTTT+TGG - chr4_2:38392669-38392688 None:intergenic 45.0%
GTACTTTGTTGCCGAACAAG+TGG + chr4_2:38392937-38392956 Msa0599260:three_prime_UTR 45.0%
TGTACATGCCTCCTGAGTTG+TGG + chr4_2:38389903-38389922 Msa0599260:intron 50.0%
! CTCGCACCTCTAAAAAGGTG+TGG + chr4_2:38390104-38390123 Msa0599260:five_prime_UTR 50.0%
! CGCACCTCTAAAAAGGTGTG+GGG + chr4_2:38390106-38390125 Msa0599260:five_prime_UTR 50.0%
ACGGTCTTTGGTTAGGCTTC+TGG + chr4_2:38390292-38390311 Msa0599260:five_prime_UTR 50.0%
GCTTTGTCAAGGCATAACCG+AGG + chr4_2:38390817-38390836 Msa0599260:CDS 50.0%
AACCGAGGGTGATCAAGATC+TGG + chr4_2:38390832-38390851 Msa0599260:CDS 50.0%
ACCGAGGGTGATCAAGATCT+GGG + chr4_2:38390833-38390852 Msa0599260:CDS 50.0%
! TGGTGAGTCATAGCGGCTTT+TGG - chr4_2:38390864-38390883 None:intergenic 50.0%
GAGCCTTCATTGTCACAGCT+AGG - chr4_2:38390950-38390969 None:intergenic 50.0%
! TGGCTCTGCTTACCAGACTT+CGG + chr4_2:38391063-38391082 Msa0599260:CDS 50.0%
GTCCCAGTACGCCAACTTTA+AGG + chr4_2:38391086-38391105 Msa0599260:CDS 50.0%
AGTGATGCTGAACCCCTTCA+AGG + chr4_2:38391403-38391422 Msa0599260:CDS 50.0%
CTCGAGGAATCTCCTTGAAG+GGG - chr4_2:38391418-38391437 None:intergenic 50.0%
CACTCGAGGAATCTCCTTGA+AGG - chr4_2:38391420-38391439 None:intergenic 50.0%
CGGATTGAGGATTGGGTGAT+CGG + chr4_2:38391469-38391488 Msa0599260:CDS 50.0%
TACGGTTGTAGCTGAGGTCT+AGG - chr4_2:38391988-38392007 None:intergenic 50.0%
GGCGTCCTGTTCTTCTCTAA+AGG + chr4_2:38392199-38392218 Msa0599260:CDS 50.0%
! CACCAATCTTGTTTCCAGCC+AGG - chr4_2:38392232-38392251 None:intergenic 50.0%
GGATGCTTAGTTTCAGCAGG+CGG - chr4_2:38392271-38392290 None:intergenic 50.0%
CCAGGATGCTTAGTTTCAGC+AGG - chr4_2:38392274-38392293 None:intergenic 50.0%
CCTGCTGAAACTAAGCATCC+TGG + chr4_2:38392271-38392290 Msa0599260:CDS 50.0%
CGGCAGCCATTCAAAGCAAA+TGG + chr4_2:38392464-38392483 Msa0599260:CDS 50.0%
GCAAATGGTTTGAAGGACGG+TGG + chr4_2:38392479-38392498 Msa0599260:CDS 50.0%
GAGTCGATCGCAAGTCTACA+AGG + chr4_2:38392555-38392574 Msa0599260:CDS 50.0%
CGATCGCAAGTCTACAAGGA+AGG + chr4_2:38392559-38392578 Msa0599260:CDS 50.0%
GATGACCTCCGAGTAGATGA+TGG - chr4_2:38392587-38392606 None:intergenic 50.0%
TGCAGGGCAGACAGATTGAC+AGG + chr4_2:38389177-38389196 Msa0599260:five_prime_UTR 55.0%
AGACAGATTGACAGGCAGGC+AGG + chr4_2:38389185-38389204 Msa0599260:five_prime_UTR 55.0%
ACAGGCAGGCAGGAAACTAG+AGG + chr4_2:38389195-38389214 Msa0599260:five_prime_UTR 55.0%
AAGGTGTGGGGTGATGAAGG+AGG + chr4_2:38390118-38390137 Msa0599260:five_prime_UTR 55.0%
CGCCCAAGGCAACAAGACAA+AGG + chr4_2:38390422-38390441 Msa0599260:CDS 55.0%
TTCGCCAAACTGGGCGTATG+AGG + chr4_2:38390774-38390793 Msa0599260:CDS 55.0%
CCCCAGATCTTGATCACCCT+CGG - chr4_2:38390837-38390856 None:intergenic 55.0%
CCGAGGGTGATCAAGATCTG+GGG + chr4_2:38390834-38390853 Msa0599260:CDS 55.0%
CCAGCATGATCGCCTGATAG+TGG - chr4_2:38391034-38391053 None:intergenic 55.0%
CCACTATCAGGCGATCATGC+TGG + chr4_2:38391031-38391050 Msa0599260:CDS 55.0%
CTATCAGGCGATCATGCTGG+TGG + chr4_2:38391034-38391053 Msa0599260:CDS 55.0%
GGCTCTGCTTACCAGACTTC+GGG + chr4_2:38391064-38391083 Msa0599260:CDS 55.0%
GTGATCGGTCTGCAGCATTG+TGG + chr4_2:38391484-38391503 Msa0599260:CDS 55.0%
ATCCACAACTGAGGCAGCCA+CGG - chr4_2:38391584-38391603 None:intergenic 55.0%
CAGCTCAGCTGGCGAATCAT+GGG + chr4_2:38391671-38391690 Msa0599260:CDS 55.0%
TCAGCTGGCGAATCATGGGT+TGG + chr4_2:38391675-38391694 Msa0599260:CDS 55.0%
ACTGCTGGTACTCTTCCTCG+AGG + chr4_2:38391887-38391906 Msa0599260:CDS 55.0%
CTAAAGGAGCTGTACCTGGC+TGG + chr4_2:38392215-38392234 Msa0599260:CDS 55.0%
GGGGATCGTGCAGTTCGATT+AGG + chr4_2:38392500-38392519 Msa0599260:CDS 55.0%
GGAAGGGGCCATCATCTACT+CGG + chr4_2:38392576-38392595 Msa0599260:CDS 55.0%
! GAGCTGGGCTTGCTTTCCTT+TGG - chr4_2:38392633-38392652 None:intergenic 55.0%
! GGTTCTGATTGGTGGGAGCT+GGG - chr4_2:38392648-38392667 None:intergenic 55.0%
!! TGGTTCTGATTGGTGGGAGC+TGG - chr4_2:38392649-38392668 None:intergenic 55.0%
!! CGCAGCGAGAGTACTCTTCT+TGG + chr4_2:38392752-38392771 Msa0599260:CDS 55.0%
GGGCAGACAGATTGACAGGC+AGG + chr4_2:38389181-38389200 Msa0599260:five_prime_UTR 60.0%
! GATCATGCTGGTGGCTCTGC+TGG + chr4_2:38391043-38391062 Msa0599260:CDS 60.0%
GCATTGTGGACCTCCTCTCG+AGG + chr4_2:38391498-38391517 Msa0599260:CDS 60.0%
TAACACCGCAAATGCCGCCG+TGG + chr4_2:38391564-38391583 Msa0599260:CDS 60.0%
GAATGCCACTGCAGCTCAGC+TGG + chr4_2:38391660-38391679 Msa0599260:CDS 60.0%
ATTCGCCAGCTGAGCTGCAG+TGG - chr4_2:38391668-38391687 None:intergenic 60.0%
GCAGCTCAGCTGGCGAATCA+TGG + chr4_2:38391670-38391689 Msa0599260:CDS 60.0%
AGGGGCCATCATCTACTCGG+AGG + chr4_2:38392579-38392598 Msa0599260:CDS 60.0%
GCGTACTGGGACCCGAAGTC+TGG - chr4_2:38391078-38391097 None:intergenic 65.0%
CACAACTGAGGCAGCCACGG+CGG - chr4_2:38391581-38391600 None:intergenic 65.0%
GGCAGCCACGGCGGCATTTG+CGG - chr4_2:38391572-38391591 None:intergenic 70.0%
CGCCGTGGCTGCCTCAGTTG+TGG + chr4_2:38391579-38391598 Msa0599260:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 38389077 38393078 38389077 ID=Msa0599260;Name=Msa0599260
chr4_2 mRNA 38389077 38393078 38389077 ID=Msa0599260-mRNA-1;Parent=Msa0599260;Name=Msa0599260-mRNA-1;_AED=0.02;_eAED=0.02;_QI=597|1|1|1|0.6|0.33|6|274|670
chr4_2 exon 38389077 38389292 38389077 ID=Msa0599260-mRNA-1:exon:8476;Parent=Msa0599260-mRNA-1
chr4_2 exon 38390012 38390443 38390012 ID=Msa0599260-mRNA-1:exon:8477;Parent=Msa0599260-mRNA-1
chr4_2 exon 38390539 38391763 38390539 ID=Msa0599260-mRNA-1:exon:8478;Parent=Msa0599260-mRNA-1
chr4_2 exon 38391879 38392025 38391879 ID=Msa0599260-mRNA-1:exon:8479;Parent=Msa0599260-mRNA-1
chr4_2 exon 38392195 38392849 38392195 ID=Msa0599260-mRNA-1:exon:8480;Parent=Msa0599260-mRNA-1
chr4_2 exon 38392870 38393078 38392870 ID=Msa0599260-mRNA-1:exon:8481;Parent=Msa0599260-mRNA-1
chr4_2 five_prime_UTR 38389077 38389292 38389077 ID=Msa0599260-mRNA-1:five_prime_utr;Parent=Msa0599260-mRNA-1
chr4_2 five_prime_UTR 38390012 38390392 38390012 ID=Msa0599260-mRNA-1:five_prime_utr;Parent=Msa0599260-mRNA-1
chr4_2 CDS 38390393 38390443 38390393 ID=Msa0599260-mRNA-1:cds;Parent=Msa0599260-mRNA-1
chr4_2 CDS 38390539 38391763 38390539 ID=Msa0599260-mRNA-1:cds;Parent=Msa0599260-mRNA-1
chr4_2 CDS 38391879 38392025 38391879 ID=Msa0599260-mRNA-1:cds;Parent=Msa0599260-mRNA-1
chr4_2 CDS 38392195 38392784 38392195 ID=Msa0599260-mRNA-1:cds;Parent=Msa0599260-mRNA-1
chr4_2 three_prime_UTR 38392785 38392849 38392785 ID=Msa0599260-mRNA-1:three_prime_utr;Parent=Msa0599260-mRNA-1
chr4_2 three_prime_UTR 38392870 38393078 38392870 ID=Msa0599260-mRNA-1:three_prime_utr;Parent=Msa0599260-mRNA-1
Gene Sequence

>Msa0599260

ATGTTTAAATTTTCTTGTTTTCATATTAACGCCCAAGGCAACAAGACAAAGAAAATAGCTAAATCTTCAACTGAAGCAATGGCCAAAGCTTTGCGAGATAGTTCCAAACATTCAGTCAGTAAAGATTCACCTATCCCTACAAGCTTAAATTCACCACTTTCAAAACAACAACCACGTAAACTAATGAATGTCTCTGAGAATGATGTTCTCGACCAGGTTTCAGTTGAGCACATTGGTAGATTAGAGGATTTCAGTAGTAAGTTTTGCATTGAATTCGACAAAAAAGTTCGCCAAACTGGGCGTATGAGGAAAAGTCAGTCGGAAAGTGTGCTTTGTCAAGGCATAACCGAGGGTGATCAAGATCTGGGGTTTTCCAAAAGCCGCTATGACTCACCAAATTCAATTGGCAGCTCTAATGATCAATCCAAAACGATTTCCAGCTTTGGGTTTCAAGTCATCCCTAGCTGTGACAATGAAGGCTCACTTTTTTCAATAGGAGATCGGACACCTTCCGATAAAGATGCTCGTGAAAATTCTGATACTCCACTATCAGGCGATCATGCTGGTGGCTCTGCTGGCTCTGCTTACCAGACTTCGGGTCCCAGTACGCCAACTTTAAGGAAGTCACGTTCTTTGCCAAATATCAAAGCTTCTACGCTTTCTTCCGCAAATAACCATGCTTTTAAACATGCATCTTCAATTTCAAGGTCTTCTGATGATCTCTGTGCTTTACGCTTGAGGAAGCAAGAGGTGTTCATCAATGTGTCTTATGATCAAATAGGGGAAACTCAAGAAAGAGAAAGTGGCATGGAAAAAACTGATAATCATATGGACAGATACTTCGATGATGGTTTTGATTCCCATCTACTTTCCGGCTTACAAAAGGACTGGACAATGCCAATTACAGATGATATAAGTGATGCTGAACCCCTTCAAGGAGATTCCTCGAGTGAGTTTCCTAACAAGGATTTTAAGGTTAAGCGGATTGAGGATTGGGTGATCGGTCTGCAGCATTGTGGACCTCCTCTCGAGGATATAACTGAATTGCCTGAATCTGTTGATCCTAAAGTTGATATTAACACCGCAAATGCCGCCGTGGCTGCCTCAGTTGTGGATCATAAGATCACTCCAGGAATGGAAACAGCTAAAAGATATATATCTTCTTTAACTGCGAATGCCACTGCAGCTCAGCTGGCGAATCATGGGTTGGCTGTGATCCCCTTTTTGAGTGCATTCGTGAGTTTGAAGGTGCTCAATTTGTCCGGAAACGCAATCGTAAGGATAACTGCTGGTACTCTTCCTCGAGGACTTCACACATTAAATTTGTCAAAAAACAATATCTCCACTATAGAGGGATTACGTGAACTTACTCGGCTTCGTGTCCTAGACCTCAGCTACAACCGTATACTAAGAATTGGACATGGTTTGGCGTCCTGTTCTTCTCTAAAGGAGCTGTACCTGGCTGGAAACAAGATTGGTGAAGTCGAGGGTCTGCACCGCCTGCTGAAACTAAGCATCCTGGATATCCGTTTTAACAAGATTTCAACTGCCAAATGTCTTGGACAACTTGCAGCCAACTATAATTCTTTGCTAGCTATCAACTTGGAAGGGAACCCTTGCCAGAAAAATGTTGGTGATGAACAAATTAAGAAATATCTGCAAAGCCTTCTTCCCCATCTTGTCTACTACAATCGGCAGCCATTCAAAGCAAATGGTTTGAAGGACGGTGGGGATCGTGCAGTTCGATTAGGAATGAATTCACAACAGTTTGATCGCAGTCTTAGAGTCGATCGCAAGTCTACAAGGAAGGGGCCATCATCTACTCGGAGGTCATCTGCTGTGTCCTCACCAAAACTGTCCAAAGGAAAGCAAGCCCAGCTCCCACCAATCAGAACCAAAACATCAACCCAAAGTCGCCATCATTTTGATTCTCCTAGCAAACCGTTGAACTTGAATTCAGGGCACTTCATGCGCAAGAGTCGCAGCGAGAGTACTCTTCTTGGAGCTTTGTAA
Protein sequence

>Msa0599260

MFKFSCFHINAQGNKTKKIAKSSTEAMAKALRDSSKHSVSKDSPIPTSLNSPLSKQQPRKLMNVSENDVLDQVSVEHIGRLEDFSSKFCIEFDKKVRQTGRMRKSQSESVLCQGITEGDQDLGFSKSRYDSPNSIGSSNDQSKTISSFGFQVIPSCDNEGSLFSIGDRTPSDKDARENSDTPLSGDHAGGSAGSAYQTSGPSTPTLRKSRSLPNIKASTLSSANNHAFKHASSISRSSDDLCALRLRKQEVFINVSYDQIGETQERESGMEKTDNHMDRYFDDGFDSHLLSGLQKDWTMPITDDISDAEPLQGDSSSEFPNKDFKVKRIEDWVIGLQHCGPPLEDITELPESVDPKVDINTANAAVAASVVDHKITPGMETAKRYISSLTANATAAQLANHGLAVIPFLSAFVSLKVLNLSGNAIVRITAGTLPRGLHTLNLSKNNISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKIGEVEGLHRLLKLSILDIRFNKISTAKCLGQLAANYNSLLAINLEGNPCQKNVGDEQIKKYLQSLLPHLVYYNRQPFKANGLKDGGDRAVRLGMNSQQFDRSLRVDRKSTRKGPSSTRRSSAVSSPKLSKGKQAQLPPIRTKTSTQSRHHFDSPSKPLNLNSGHFMRKSRSESTLLGAL*