Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0678840 | XP_003605903.1 | 97.826 | 276 | 6 | 0 | 1 | 276 | 1 | 276 | 0.0 | 565 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0678840 | sp|P87027|SPG1_SCHPO | 45.455 | 187 | 102 | 0 | 90 | 276 | 9 | 195 | 2.62e-57 | 185 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0678840 | G7JDG8 | 97.826 | 276 | 6 | 0 | 1 | 276 | 1 | 276 | 0.0 | 565 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0640410 | Msa0678840 | 0.881424 | 2.429265e-70 | -8.615850e-47 |
| Msa0543880 | Msa0678840 | 0.820849 | 5.519981e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0678840 | MtrunA17_Chr4g0024431 | 97.826 | 276 | 6 | 0 | 1 | 276 | 1 | 276 | 0.0 | 565 |
| Msa0678840 | MtrunA17_Chr5g0443631 | 63.707 | 259 | 91 | 1 | 21 | 276 | 31 | 289 | 4.85e-111 | 322 |
| Msa0678840 | MtrunA17_Chr3g0109721 | 30.539 | 167 | 106 | 4 | 93 | 256 | 12 | 171 | 3.69e-14 | 69.7 |
| Msa0678840 | MtrunA17_Chr5g0433561 | 29.670 | 182 | 112 | 5 | 78 | 256 | 3 | 171 | 5.79e-14 | 68.9 |
| Msa0678840 | MtrunA17_Chr7g0265001 | 26.667 | 180 | 124 | 3 | 90 | 266 | 15 | 189 | 2.30e-13 | 67.8 |
| Msa0678840 | MtrunA17_Chr8g0390561 | 27.879 | 165 | 113 | 2 | 93 | 256 | 11 | 170 | 4.58e-13 | 66.6 |
| Msa0678840 | MtrunA17_Chr1g0180291 | 26.667 | 180 | 123 | 4 | 90 | 266 | 13 | 186 | 1.33e-12 | 65.5 |
| Msa0678840 | MtrunA17_Chr4g0055081 | 24.260 | 169 | 122 | 2 | 89 | 256 | 7 | 170 | 1.43e-12 | 65.1 |
| Msa0678840 | MtrunA17_Chr5g0400131 | 24.260 | 169 | 122 | 2 | 89 | 256 | 7 | 170 | 2.70e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0678840 | AT3G21700.3 | 60.269 | 297 | 92 | 5 | 1 | 276 | 1 | 292 | 2.83e-111 | 323 |
| Msa0678840 | AT3G21700.1 | 59.933 | 297 | 92 | 6 | 1 | 276 | 1 | 291 | 2.19e-109 | 318 |
| Msa0678840 | AT5G54840.1 | 52.500 | 280 | 124 | 5 | 1 | 276 | 12 | 286 | 3.62e-91 | 272 |
| Msa0678840 | AT3G21700.2 | 52.459 | 244 | 89 | 6 | 1 | 223 | 1 | 238 | 3.37e-68 | 212 |
| Msa0678840 | AT5G54840.2 | 44.444 | 198 | 101 | 5 | 1 | 194 | 12 | 204 | 2.23e-40 | 139 |
| Msa0678840 | AT5G54840.3 | 55.714 | 140 | 57 | 3 | 59 | 194 | 66 | 204 | 7.71e-40 | 139 |
| Msa0678840 | AT4G19640.1 | 28.824 | 170 | 111 | 4 | 90 | 256 | 9 | 171 | 1.87e-14 | 70.9 |
| Msa0678840 | AT5G45130.1 | 28.824 | 170 | 111 | 4 | 90 | 256 | 9 | 171 | 4.90e-14 | 69.7 |
| Msa0678840 | AT2G44610.1 | 25.444 | 169 | 120 | 2 | 89 | 256 | 7 | 170 | 3.26e-13 | 67.4 |
| Msa0678840 | AT5G45130.2 | 29.268 | 164 | 106 | 4 | 96 | 256 | 23 | 179 | 5.57e-13 | 67.0 |
| Msa0678840 | AT5G03530.2 | 27.222 | 180 | 122 | 4 | 90 | 266 | 12 | 185 | 8.45e-13 | 66.2 |
| Msa0678840 | AT5G03530.1 | 27.222 | 180 | 122 | 4 | 90 | 266 | 12 | 185 | 8.45e-13 | 66.2 |
| Msa0678840 | AT5G59150.1 | 26.667 | 180 | 125 | 3 | 81 | 259 | 3 | 176 | 1.83e-12 | 65.5 |
| Msa0678840 | AT1G07410.1 | 24.852 | 169 | 121 | 2 | 92 | 259 | 13 | 176 | 5.62e-11 | 61.2 |
Find 94 sgRNAs with CRISPR-Local
Find 246 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAAACTGTAAGGGTAATT+TGG | 0.157269 | 4_4:-35642974 | None:intergenic |
| ACGAAATTGCTATGTTATTA+TGG | 0.194244 | 4_4:+35646705 | Msa0678840:intron |
| TGAAACTGTAAGGGTAATTT+GGG | 0.232830 | 4_4:-35642973 | None:intergenic |
| TCGATTCAAACATGTTATTA+AGG | 0.246888 | 4_4:+35646745 | Msa0678840:three_prime_UTR |
| CACGTATATCCTATTGTATC+TGG | 0.293441 | 4_4:+35643953 | Msa0678840:CDS |
| AAATGAATTGGATACTGATT+TGG | 0.296548 | 4_4:+35643462 | Msa0678840:CDS |
| AAAACTGTGTGAGAAATAAA+AGG | 0.314828 | 4_4:-35646895 | None:intergenic |
| CTCAGCCATGAAAATGAAAA+AGG | 0.319557 | 4_4:-35643023 | None:intergenic |
| CACCGACTGCTTGCCTGCTC+TGG | 0.321280 | 4_4:+35643316 | Msa0678840:CDS |
| GCCTGCTCTGGAAAGCAGCC+AGG | 0.323740 | 4_4:+35643328 | Msa0678840:CDS |
| TTGTTGGGTGATTGCCAAAT+TGG | 0.353624 | 4_4:+35643502 | Msa0678840:CDS |
| ATTGTTGTAGACGGCAATTC+CGG | 0.368449 | 4_4:+35644563 | Msa0678840:intron |
| TTCACTCAAAATTAGCTTGT+TGG | 0.369785 | 4_4:+35643486 | Msa0678840:CDS |
| GTCAAAATATCATCACTCTT+GGG | 0.372845 | 4_4:+35646458 | Msa0678840:three_prime_UTR |
| TCACTCAAAATTAGCTTGTT+GGG | 0.374517 | 4_4:+35643487 | Msa0678840:CDS |
| ATGGTCCATTGCATATCAAT+AGG | 0.376812 | 4_4:-35644624 | None:intergenic |
| TTCATAGTATTGAAACTGTA+AGG | 0.377115 | 4_4:-35642983 | None:intergenic |
| AGTCAAAATATCATCACTCT+TGG | 0.384546 | 4_4:+35646457 | Msa0678840:three_prime_UTR |
| ATCTCCGCGGGCTTCGCTGT+TGG | 0.390597 | 4_4:+35643396 | Msa0678840:CDS |
| GTATTGGACATCTTTAGATT+TGG | 0.409338 | 4_4:+35646996 | Msa0678840:three_prime_UTR |
| ACCTGGCTGCTTTCCAGAGC+AGG | 0.410923 | 4_4:-35643329 | None:intergenic |
| CTTGGGGCAATCGAGTTGTT+AGG | 0.411074 | 4_4:+35646475 | Msa0678840:three_prime_UTR |
| CTAGTGAGAAATAAAAGAAA+TGG | 0.416869 | 4_4:+35646590 | Msa0678840:three_prime_UTR |
| TGGAATGGAATGGAATGAAA+TGG | 0.417218 | 4_4:-35643078 | None:intergenic |
| CCAGCTTCCAATGGCATGTA+AGG | 0.422047 | 4_4:+35644083 | Msa0678840:CDS |
| CTAAACACGCACTAATTCTC+TGG | 0.431077 | 4_4:-35646620 | None:intergenic |
| GGTACAAAGAAGCAAGGAAA+TGG | 0.432118 | 4_4:+35644456 | Msa0678840:CDS |
| CAAGTCGATGCACATTAAAC+AGG | 0.439545 | 4_4:+35644139 | Msa0678840:CDS |
| TTGAACATAGTTATTTCCAT+TGG | 0.442336 | 4_4:-35646516 | None:intergenic |
| AGAAGCAAGGAAATGGAATC+AGG | 0.446817 | 4_4:+35644463 | Msa0678840:CDS |
| CAAAACTCTTCGACCTACCT+TGG | 0.461562 | 4_4:+35646295 | Msa0678840:CDS |
| TTGTACTTCCCAGATACAAT+AGG | 0.464379 | 4_4:-35643962 | None:intergenic |
| CTGAATGAAATCATCAAACT+TGG | 0.473260 | 4_4:-35644598 | None:intergenic |
| TAAACAAATCAAATTACATA+TGG | 0.475223 | 4_4:+35646950 | Msa0678840:three_prime_UTR |
| ACGGCAATTCCGGTGTTGAT+AGG | 0.475548 | 4_4:+35644573 | Msa0678840:CDS |
| GAGAAATAAAAGGAAACAAA+AGG | 0.480481 | 4_4:-35646885 | None:intergenic |
| TTCAGCATTGCCATCTCCGC+GGG | 0.486533 | 4_4:+35643384 | Msa0678840:CDS |
| AACAGCGAAGCCCGCGGAGA+TGG | 0.486569 | 4_4:-35643394 | None:intergenic |
| TTGACTTAAACATCTCTACT+TGG | 0.486695 | 4_4:-35646440 | None:intergenic |
| GTTTATTTCAGCAGACACTT+TGG | 0.492544 | 4_4:-35646932 | None:intergenic |
| CTTAAACATCTCTACTTGGT+CGG | 0.493017 | 4_4:-35646436 | None:intergenic |
| ACTCCTTCGCGCTGCGAAGG+AGG | 0.493460 | 4_4:+35643245 | Msa0678840:CDS |
| GAGGAAAGGACCAAATCAAA+TGG | 0.496937 | 4_4:+35643906 | Msa0678840:CDS |
| TTTATTTCAGTGTTCTGGGA+TGG | 0.498640 | 4_4:+35644435 | Msa0678840:intron |
| CTTCGAGAAAATAAGAAAAG+TGG | 0.503828 | 4_4:-35643156 | None:intergenic |
| GTCACTCCTTCGCGCTGCGA+AGG | 0.504957 | 4_4:+35643242 | Msa0678840:CDS |
| GTGTATGTCTCTGAGCGAAA+TGG | 0.509619 | 4_4:-35643129 | None:intergenic |
| CCTTACATGCCATTGGAAGC+TGG | 0.517454 | 4_4:-35644083 | None:intergenic |
| GTGGAAAGGAATCTAAATGT+TGG | 0.519478 | 4_4:+35646321 | Msa0678840:CDS |
| ACTGAGTCCTTACATGCCAT+TGG | 0.527947 | 4_4:-35644090 | None:intergenic |
| GGAATGGAATGGAATGAAAT+GGG | 0.531210 | 4_4:-35643077 | None:intergenic |
| TGGAATGGAATGAAATGGGT+TGG | 0.533535 | 4_4:-35643073 | None:intergenic |
| TGGTCCATTGCATATCAATA+GGG | 0.535828 | 4_4:-35644623 | None:intergenic |
| TCAAAATATCATCACTCTTG+GGG | 0.542097 | 4_4:+35646459 | Msa0678840:three_prime_UTR |
| CATAGACATGTCATTTCCAA+TGG | 0.545053 | 4_4:+35646500 | Msa0678840:three_prime_UTR |
| GTGTTGCAGGTGAAATATGT+TGG | 0.547304 | 4_4:+35643856 | Msa0678840:intron |
| ATGGAATGAAATGGGTTGGA+TGG | 0.549141 | 4_4:-35643069 | None:intergenic |
| GGAGAATCAGTACATGGCTA+AGG | 0.556530 | 4_4:-35646864 | None:intergenic |
| AGCTCCCTATTGATATGCAA+TGG | 0.560194 | 4_4:+35644619 | Msa0678840:CDS |
| TGTTGCAGGTGAAATATGTT+GGG | 0.562818 | 4_4:+35643857 | Msa0678840:intron |
| ACGTATATCCTATTGTATCT+GGG | 0.564779 | 4_4:+35643954 | Msa0678840:CDS |
| AAATCAAATGGACAAAACAT+TGG | 0.567322 | 4_4:+35643918 | Msa0678840:CDS |
| AAGAGCAGGGAGTGGAACAG+AGG | 0.569125 | 4_4:+35643887 | Msa0678840:CDS |
| AGATTCCTTTCCACTGTCCA+AGG | 0.569754 | 4_4:-35646312 | None:intergenic |
| CTGTACGTAGCATTAGCACC+TGG | 0.570834 | 4_4:-35643346 | None:intergenic |
| TATTGTATCTGGGAAGTACA+AGG | 0.574671 | 4_4:+35643964 | Msa0678840:CDS |
| ATCTCCGGAGCAACGATACA+CGG | 0.577259 | 4_4:-35643276 | None:intergenic |
| CTTCGACCTACCTTGGACAG+TGG | 0.579092 | 4_4:+35646302 | Msa0678840:CDS |
| TTCCAGAGCAGGCAAGCAGT+CGG | 0.579459 | 4_4:-35643318 | None:intergenic |
| AAGCCTCCTTCGCAGCGCGA+AGG | 0.580558 | 4_4:-35643248 | None:intergenic |
| ACAGCCGTGTATCGTTGCTC+CGG | 0.583287 | 4_4:+35643272 | Msa0678840:CDS |
| GAGCTCGAAGAATACATCTC+CGG | 0.586436 | 4_4:-35643291 | None:intergenic |
| CAGGGAGTGGAACAGAGGAA+AGG | 0.595988 | 4_4:+35643892 | Msa0678840:CDS |
| ATCAGAAGACCAGCTTCCAA+TGG | 0.601240 | 4_4:+35644074 | Msa0678840:CDS |
| GGAGATGGCAATGCTGAATG+TGG | 0.604089 | 4_4:-35643379 | None:intergenic |
| ATTCAGCATTGCCATCTCCG+CGG | 0.613287 | 4_4:+35643383 | Msa0678840:CDS |
| GCAATGGACCATCGCTAGTG+AGG | 0.615352 | 4_4:+35644635 | Msa0678840:CDS |
| TCATAGTATTGAAACTGTAA+GGG | 0.616811 | 4_4:-35642982 | None:intergenic |
| TCCTTTCCACTGTCCAAGGT+AGG | 0.617870 | 4_4:-35646308 | None:intergenic |
| ACCTACCTTGGACAGTGGAA+AGG | 0.621028 | 4_4:+35646307 | Msa0678840:CDS |
| ACAAAAGGAGAATCAGTACA+TGG | 0.622583 | 4_4:-35646870 | None:intergenic |
| AGCGATTACCTCACTAGCGA+TGG | 0.627900 | 4_4:-35644643 | None:intergenic |
| GACAAAACATTGGTTGTGAG+TGG | 0.635995 | 4_4:+35643928 | Msa0678840:CDS |
| ACAGGCAAGAACATATGCAA+AGG | 0.636144 | 4_4:+35646197 | Msa0678840:intron |
| CTGAGCGAAATGGAATGAAG+CGG | 0.640344 | 4_4:-35643119 | None:intergenic |
| TGGGATGGTACAAAGAAGCA+AGG | 0.641092 | 4_4:+35644450 | Msa0678840:CDS |
| AACTTGGTTCCTATCAACAC+CGG | 0.647380 | 4_4:-35644582 | None:intergenic |
| TGCACTTGAAAAGAACAAAG+TGG | 0.664540 | 4_4:-35646229 | None:intergenic |
| GAGATGGCAATGCTGAATGT+GGG | 0.664888 | 4_4:-35643378 | None:intergenic |
| TTGCAGAGAAGTTTCGACGG+TGG | 0.670379 | 4_4:-35643422 | None:intergenic |
| TGGTTGCAGAGAAGTTTCGA+CGG | 0.671139 | 4_4:-35643425 | None:intergenic |
| GAATCCAACAGCGAAGCCCG+CGG | 0.676951 | 4_4:-35643400 | None:intergenic |
| GAAACTGTAAGGGTAATTTG+GGG | 0.677919 | 4_4:-35642972 | None:intergenic |
| AATGGCATGTAAGGACTCAG+TGG | 0.696623 | 4_4:+35644092 | Msa0678840:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTTTAATATTATATATGA+AGG | + | chr4_4:35644042-35644061 | Msa0678840:intron | 10.0% |
| !! | TGTTTAATATTATATATGAA+GGG | + | chr4_4:35644043-35644062 | Msa0678840:intron | 10.0% |
| !!! | ATTTTCATTTCAATTATATT+TGG | + | chr4_4:35644370-35644389 | Msa0678840:intron | 10.0% |
| !! | AATGAATATAAATTTATAAG+AGG | + | chr4_4:35645011-35645030 | Msa0678840:intron | 10.0% |
| !! | ATGAATATAAATTTATAAGA+GGG | + | chr4_4:35645012-35645031 | Msa0678840:intron | 10.0% |
| !!! | TTTAAAATTATTAGTTGTGT+CGG | + | chr4_4:35643667-35643686 | Msa0678840:intron | 15.0% |
| !! | TAAATTGAAAAGAACAATAT+TGG | - | chr4_4:35643748-35643767 | None:intergenic | 15.0% |
| !! | TGTTGAATTTGATATTTAAA+TGG | + | chr4_4:35643799-35643818 | Msa0678840:intron | 15.0% |
| !! | GTTGAATTTGATATTTAAAT+GGG | + | chr4_4:35643800-35643819 | Msa0678840:intron | 15.0% |
| !! | GTTTAATATTATATATGAAG+GGG | + | chr4_4:35644044-35644063 | Msa0678840:intron | 15.0% |
| !!! | TTAATTGTTAAGAAGAATTT+TGG | + | chr4_4:35644411-35644430 | Msa0678840:intron | 15.0% |
| !! | TTAAGAATGAAAAAATGATT+CGG | - | chr4_4:35644928-35644947 | None:intergenic | 15.0% |
| !! | TCAATGTTTATCTTAAAATA+TGG | - | chr4_4:35645085-35645104 | None:intergenic | 15.0% |
| !! | CATATACTATAAAGTTAAAT+TGG | - | chr4_4:35645238-35645257 | None:intergenic | 15.0% |
| !! | TGTTTAATAATCATAATCAT+AGG | - | chr4_4:35645296-35645315 | None:intergenic | 15.0% |
| !! | ATTCATGATCAATTTAATTA+TGG | + | chr4_4:35645707-35645726 | Msa0678840:intron | 15.0% |
| !! | ATCAATTTAATTATGGAATA+AGG | + | chr4_4:35645714-35645733 | Msa0678840:intron | 15.0% |
| !! | GTTTGTAAATAAATGATTAT+GGG | - | chr4_4:35646099-35646118 | None:intergenic | 15.0% |
| !! | TGTTTGTAAATAAATGATTA+TGG | - | chr4_4:35646100-35646119 | None:intergenic | 15.0% |
| !! | TAAACAAATCAAATTACATA+TGG | + | chr4_4:35646950-35646969 | Msa0678840:three_prime_UTR | 15.0% |
| !!! | GTTTTTTATTTATGAAGTAT+TGG | + | chr4_4:35646980-35646999 | Msa0678840:three_prime_UTR | 15.0% |
| !! | TTAAGTGTAATTACAAGTTT+CGG | - | chr4_4:35643636-35643655 | None:intergenic | 20.0% |
| !! | AGAAAATTACAAATTCACAT+TGG | - | chr4_4:35644343-35644362 | None:intergenic | 20.0% |
| !!! | AATCAGGTAACATATTATTT+TGG | + | chr4_4:35644479-35644498 | Msa0678840:intron | 20.0% |
| !!! | CAATCTTCTAAAAATTAAGA+TGG | - | chr4_4:35644741-35644760 | None:intergenic | 20.0% |
| !!! | TTAATCTTCATCTTTTAAGT+TGG | + | chr4_4:35645036-35645055 | Msa0678840:intron | 20.0% |
| !! | AAATTAGTAATAGTGTCAAT+AGG | - | chr4_4:35645430-35645449 | None:intergenic | 20.0% |
| !! | ACTATTACTAATTTCTTTGT+AGG | + | chr4_4:35645436-35645455 | Msa0678840:intron | 20.0% |
| !! | CTATTACTAATTTCTTTGTA+GGG | + | chr4_4:35645437-35645456 | Msa0678840:intron | 20.0% |
| !!! | TGACTTTTGTCAAAATATTA+TGG | + | chr4_4:35645662-35645681 | Msa0678840:intron | 20.0% |
| !! | CGATCTAATAATTATTAATG+TGG | - | chr4_4:35645852-35645871 | None:intergenic | 20.0% |
| !!! | GAAAAACCAAATTTGAAATA+TGG | - | chr4_4:35645887-35645906 | None:intergenic | 20.0% |
| !! | TAAATAAATGATTATGGGTT+GGG | - | chr4_4:35646094-35646113 | None:intergenic | 20.0% |
| !! | TCATAGTATTGAAACTGTAA+GGG | - | chr4_4:35642985-35643004 | None:intergenic | 25.0% |
| !! | TTCATAGTATTGAAACTGTA+AGG | - | chr4_4:35642986-35643005 | None:intergenic | 25.0% |
| ! | AGAATGAAACAAAAATGGAA+TGG | - | chr4_4:35643096-35643115 | None:intergenic | 25.0% |
| ! | GGAATAGAATGAAACAAAAA+TGG | - | chr4_4:35643101-35643120 | None:intergenic | 25.0% |
| !! | TCAGACTTTTGTCTAAAAAA+TGG | + | chr4_4:35643220-35643239 | Msa0678840:CDS | 25.0% |
| !! | TGTTTTTCACACAAATGAAT+TGG | + | chr4_4:35643450-35643469 | Msa0678840:CDS | 25.0% |
| !! | AAATGAATTGGATACTGATT+TGG | + | chr4_4:35643462-35643481 | Msa0678840:CDS | 25.0% |
| !!! | AAAAACTGGTTTTTCCAATT+TGG | - | chr4_4:35643519-35643538 | None:intergenic | 25.0% |
| !!! | AATTGGAAAAACCAGTTTTT+TGG | + | chr4_4:35643519-35643538 | Msa0678840:CDS | 25.0% |
| ! | TCATATACTTACCAAAAAAC+TGG | - | chr4_4:35643533-35643552 | None:intergenic | 25.0% |
| !! | AATGTTTTGTCCATTTGATT+TGG | - | chr4_4:35643919-35643938 | None:intergenic | 25.0% |
| ! | AAATCAAATGGACAAAACAT+TGG | + | chr4_4:35643918-35643937 | Msa0678840:CDS | 25.0% |
| ! | AATATTATATATGAAGGGGA+TGG | + | chr4_4:35644048-35644067 | Msa0678840:intron | 25.0% |
| !! | AAACAGGTAATTTTCGATTT+CGG | + | chr4_4:35644155-35644174 | Msa0678840:intron | 25.0% |
| ! | AATTTCTGCTGAAAATTGAT+TGG | + | chr4_4:35644507-35644526 | Msa0678840:intron | 25.0% |
| !!! | TAACAACGTTTTATTCCAAA+AGG | + | chr4_4:35645124-35645143 | Msa0678840:intron | 25.0% |
| !! | TATTCAGCTTTTCTCAATAA+AGG | - | chr4_4:35645211-35645230 | None:intergenic | 25.0% |
| ! | TAGGAATGACAAAACAATAA+AGG | - | chr4_4:35645277-35645296 | None:intergenic | 25.0% |
| ! | AAATGTACATGCACTAAAAA+AGG | - | chr4_4:35645576-35645595 | None:intergenic | 25.0% |
| !! | TTTTAGTGCATGTACATTTT+TGG | + | chr4_4:35645577-35645596 | Msa0678840:intron | 25.0% |
| ! | TTATTTACCAATTTGGTCAA+TGG | - | chr4_4:35645774-35645793 | None:intergenic | 25.0% |
| !!! | TAGAGTGTTATTTACCAATT+TGG | - | chr4_4:35645781-35645800 | None:intergenic | 25.0% |
| ! | AACGATCCATATTTCAAATT+TGG | + | chr4_4:35645878-35645897 | Msa0678840:intron | 25.0% |
| ! | GTAAATAAATGATTATGGGT+TGG | - | chr4_4:35646095-35646114 | None:intergenic | 25.0% |
| ! | CATTTGAACATTGAATTAAC+AGG | + | chr4_4:35646179-35646198 | Msa0678840:intron | 25.0% |
| !! | GATTTTCAGAAATCAATGAT+GGG | - | chr4_4:35646351-35646370 | None:intergenic | 25.0% |
| !! | AGATTTTCAGAAATCAATGA+TGG | - | chr4_4:35646352-35646371 | None:intergenic | 25.0% |
| !! | TTGAACATAGTTATTTCCAT+TGG | - | chr4_4:35646519-35646538 | None:intergenic | 25.0% |
| !!! | ACAAAAAGTGTGGTTTTAAA+TGG | + | chr4_4:35646553-35646572 | Msa0678840:three_prime_UTR | 25.0% |
| ! | CTAGTGAGAAATAAAAGAAA+TGG | + | chr4_4:35646590-35646609 | Msa0678840:three_prime_UTR | 25.0% |
| ! | ACGAAATTGCTATGTTATTA+TGG | + | chr4_4:35646705-35646724 | Msa0678840:intron | 25.0% |
| ! | TCGATTCAAACATGTTATTA+AGG | + | chr4_4:35646745-35646764 | Msa0678840:three_prime_UTR | 25.0% |
| ! | AGCAAGATAAAAAAACATCA+TGG | - | chr4_4:35646786-35646805 | None:intergenic | 25.0% |
| !!! | GTTTTTTTATCTTGCTTTGA+AGG | + | chr4_4:35646790-35646809 | Msa0678840:three_prime_UTR | 25.0% |
| ! | GAGAAATAAAAGGAAACAAA+AGG | - | chr4_4:35646888-35646907 | None:intergenic | 25.0% |
| ! | AAAACTGTGTGAGAAATAAA+AGG | - | chr4_4:35646898-35646917 | None:intergenic | 25.0% |
| !!! | TTTTATTTCTCACACAGTTT+TGG | + | chr4_4:35646897-35646916 | Msa0678840:three_prime_UTR | 25.0% |
| TGAAACTGTAAGGGTAATTT+GGG | - | chr4_4:35642976-35642995 | None:intergenic | 30.0% | |
| TTGAAACTGTAAGGGTAATT+TGG | - | chr4_4:35642977-35642996 | None:intergenic | 30.0% | |
| !! | AAGCTCCTTTTTCATTTTCA+TGG | + | chr4_4:35643018-35643037 | Msa0678840:five_prime_UTR | 30.0% |
| GAAACAAAAATGGAATGGAA+TGG | - | chr4_4:35643091-35643110 | None:intergenic | 30.0% | |
| CTTCGAGAAAATAAGAAAAG+TGG | - | chr4_4:35643159-35643178 | None:intergenic | 30.0% | |
| TCATTTGTGTGAAAAACAGA+TGG | - | chr4_4:35643448-35643467 | None:intergenic | 30.0% | |
| !! | TTCACTCAAAATTAGCTTGT+TGG | + | chr4_4:35643486-35643505 | Msa0678840:CDS | 30.0% |
| !! | TCACTCAAAATTAGCTTGTT+GGG | + | chr4_4:35643487-35643506 | Msa0678840:CDS | 30.0% |
| TTGTTGAAAAAATGTGTTGC+AGG | + | chr4_4:35643843-35643862 | Msa0678840:intron | 30.0% | |
| ACGTATATCCTATTGTATCT+GGG | + | chr4_4:35643954-35643973 | Msa0678840:CDS | 30.0% | |
| AATGGATGGTAATTGGATAT+TGG | + | chr4_4:35644195-35644214 | Msa0678840:intron | 30.0% | |
| !!! | TTGGTTTTATTTCAGTGTTC+TGG | + | chr4_4:35644430-35644449 | Msa0678840:intron | 30.0% |
| !!! | TGGTTTTATTTCAGTGTTCT+GGG | + | chr4_4:35644431-35644450 | Msa0678840:intron | 30.0% |
| CTGAATGAAATCATCAAACT+TGG | - | chr4_4:35644601-35644620 | None:intergenic | 30.0% | |
| !! | CTTTCTAGTTAGTGTATGTT+TGG | + | chr4_4:35644670-35644689 | Msa0678840:intron | 30.0% |
| !!! | TCTTTTAAGTTGGTTCTGTA+AGG | + | chr4_4:35645046-35645065 | Msa0678840:intron | 30.0% |
| !!! | TTTTGGAATTGAACTCCTTT+TGG | - | chr4_4:35645142-35645161 | None:intergenic | 30.0% |
| ! | TAGATTTTGTAGGCTTCTTT+TGG | - | chr4_4:35645159-35645178 | None:intergenic | 30.0% |
| ACATGCAAGACTAATCAATT+TGG | + | chr4_4:35645178-35645197 | Msa0678840:intron | 30.0% | |
| GTAACGTGTAAAGAAAATAG+GGG | - | chr4_4:35645408-35645427 | None:intergenic | 30.0% | |
| GGTAACGTGTAAAGAAAATA+GGG | - | chr4_4:35645409-35645428 | None:intergenic | 30.0% | |
| AGGTAACGTGTAAAGAAAAT+AGG | - | chr4_4:35645410-35645429 | None:intergenic | 30.0% | |
| TCTAATTGGAACACTATATG+CGG | - | chr4_4:35645487-35645506 | None:intergenic | 30.0% | |
| CAAATTTGTGGTATATGCAT+GGG | - | chr4_4:35645551-35645570 | None:intergenic | 30.0% | |
| CTAAAAAAGGACCAAATTTG+TGG | - | chr4_4:35645563-35645582 | None:intergenic | 30.0% | |
| AGTAGTCATTAGACTAAGAT+TGG | - | chr4_4:35645938-35645957 | None:intergenic | 30.0% | |
| !! | ACTGCTTATAATGGATTATG+GGG | - | chr4_4:35646027-35646046 | None:intergenic | 30.0% |
| !! | GACTGCTTATAATGGATTAT+GGG | - | chr4_4:35646028-35646047 | None:intergenic | 30.0% |
| !! | TGACTGCTTATAATGGATTA+TGG | - | chr4_4:35646029-35646048 | None:intergenic | 30.0% |
| ! | TTTGATGATCATTGATCCTA+AGG | + | chr4_4:35646056-35646075 | Msa0678840:intron | 30.0% |
| ! | TTGATGATCATTGATCCTAA+GGG | + | chr4_4:35646057-35646076 | Msa0678840:intron | 30.0% |
| TTGACTTAAACATCTCTACT+TGG | - | chr4_4:35646443-35646462 | None:intergenic | 30.0% | |
| AGTCAAAATATCATCACTCT+TGG | + | chr4_4:35646457-35646476 | Msa0678840:three_prime_UTR | 30.0% | |
| GTCAAAATATCATCACTCTT+GGG | + | chr4_4:35646458-35646477 | Msa0678840:three_prime_UTR | 30.0% | |
| TCAAAATATCATCACTCTTG+GGG | + | chr4_4:35646459-35646478 | Msa0678840:three_prime_UTR | 30.0% | |
| !!! | TTATGGTTTTGTCAAACTCA+CGG | + | chr4_4:35646722-35646741 | Msa0678840:three_prime_UTR | 30.0% |
| GTATTGGACATCTTTAGATT+TGG | + | chr4_4:35646996-35647015 | Msa0678840:three_prime_UTR | 30.0% | |
| !! | ATGTTTCTGCTTTTACGCTT+CGG | - | chr4_4:35642924-35642943 | None:intergenic | 35.0% |
| GAAACTGTAAGGGTAATTTG+GGG | - | chr4_4:35642975-35642994 | None:intergenic | 35.0% | |
| CTCAGCCATGAAAATGAAAA+AGG | - | chr4_4:35643026-35643045 | None:intergenic | 35.0% | |
| GGAATGGAATGGAATGAAAT+GGG | - | chr4_4:35643080-35643099 | None:intergenic | 35.0% | |
| TGGAATGGAATGGAATGAAA+TGG | - | chr4_4:35643081-35643100 | None:intergenic | 35.0% | |
| TGTTGCAGGTGAAATATGTT+GGG | + | chr4_4:35643857-35643876 | Msa0678840:intron | 35.0% | |
| CACGTATATCCTATTGTATC+TGG | + | chr4_4:35643953-35643972 | Msa0678840:CDS | 35.0% | |
| TTGTACTTCCCAGATACAAT+AGG | - | chr4_4:35643965-35643984 | None:intergenic | 35.0% | |
| ! | TATTGTATCTGGGAAGTACA+AGG | + | chr4_4:35643964-35643983 | Msa0678840:CDS | 35.0% |
| TAACTACATTAGTCCGATCT+CGG | - | chr4_4:35644222-35644241 | None:intergenic | 35.0% | |
| !! | TTTATTTCAGTGTTCTGGGA+TGG | + | chr4_4:35644435-35644454 | Msa0678840:intron | 35.0% |
| TGGTCCATTGCATATCAATA+GGG | - | chr4_4:35644626-35644645 | None:intergenic | 35.0% | |
| ATGGTCCATTGCATATCAAT+AGG | - | chr4_4:35644627-35644646 | None:intergenic | 35.0% | |
| TTAGTGTATGTTTGGTTGAG+CGG | + | chr4_4:35644678-35644697 | Msa0678840:intron | 35.0% | |
| AAGATTGAAAATCCGTCTTG+AGG | + | chr4_4:35644754-35644773 | Msa0678840:intron | 35.0% | |
| GTCTCACATTGAATGAGATA+AGG | + | chr4_4:35644988-35645007 | Msa0678840:intron | 35.0% | |
| ! | GTCTTGCATGTAGATTTTGT+AGG | - | chr4_4:35645169-35645188 | None:intergenic | 35.0% |
| TTCAGTTGCAATGTCAATTC+AGG | + | chr4_4:35645338-35645357 | Msa0678840:intron | 35.0% | |
| CAATGTCAATTCAGGTGAAA+GGG | + | chr4_4:35645346-35645365 | Msa0678840:intron | 35.0% | |
| AAGGGATTGATAGGATTCTT+AGG | + | chr4_4:35645364-35645383 | Msa0678840:intron | 35.0% | |
| ! | AGCAGGTGATTGATTCTAAT+TGG | - | chr4_4:35645501-35645520 | None:intergenic | 35.0% |
| CCAAATTTGTGGTATATGCA+TGG | - | chr4_4:35645552-35645571 | None:intergenic | 35.0% | |
| CCATGCATATACCACAAATT+TGG | + | chr4_4:35645549-35645568 | Msa0678840:intron | 35.0% | |
| GTCAAATCCATTGACCAAAT+TGG | + | chr4_4:35645764-35645783 | Msa0678840:intron | 35.0% | |
| TTATTAATGTGGTGAGTGTG+TGG | - | chr4_4:35645841-35645860 | None:intergenic | 35.0% | |
| GGATCAATGATCATCAAACA+TGG | - | chr4_4:35646054-35646073 | None:intergenic | 35.0% | |
| !! | TAAATGATTATGGGTTGGGT+AGG | - | chr4_4:35646090-35646109 | None:intergenic | 35.0% |
| TGCACTTGAAAAGAACAAAG+TGG | - | chr4_4:35646232-35646251 | None:intergenic | 35.0% | |
| GTGGAAAGGAATCTAAATGT+TGG | + | chr4_4:35646321-35646340 | Msa0678840:CDS | 35.0% | |
| CTTAAACATCTCTACTTGGT+CGG | - | chr4_4:35646439-35646458 | None:intergenic | 35.0% | |
| ! | CATAGACATGTCATTTCCAA+TGG | + | chr4_4:35646500-35646519 | Msa0678840:three_prime_UTR | 35.0% |
| ACAAAAGGAGAATCAGTACA+TGG | - | chr4_4:35646873-35646892 | None:intergenic | 35.0% | |
| GTTTATTTCAGCAGACACTT+TGG | - | chr4_4:35646935-35646954 | None:intergenic | 35.0% | |
| !! | ATGGAATGAAATGGGTTGGA+TGG | - | chr4_4:35643072-35643091 | None:intergenic | 40.0% |
| TGGAATGGAATGAAATGGGT+TGG | - | chr4_4:35643076-35643095 | None:intergenic | 40.0% | |
| TTGTTGGGTGATTGCCAAAT+TGG | + | chr4_4:35643502-35643521 | Msa0678840:CDS | 40.0% | |
| !! | TATTAGTTGTGTCGGCTTGT+CGG | + | chr4_4:35643675-35643694 | Msa0678840:intron | 40.0% |
| AACACCTTGAACACTGATAC+CGG | - | chr4_4:35643715-35643734 | None:intergenic | 40.0% | |
| GTGTTGCAGGTGAAATATGT+TGG | + | chr4_4:35643856-35643875 | Msa0678840:intron | 40.0% | |
| TGTTGGGAATGAAAAAGAGC+AGG | + | chr4_4:35643873-35643892 | Msa0678840:CDS | 40.0% | |
| GTTGGGAATGAAAAAGAGCA+GGG | + | chr4_4:35643874-35643893 | Msa0678840:CDS | 40.0% | |
| GAGGAAAGGACCAAATCAAA+TGG | + | chr4_4:35643906-35643925 | Msa0678840:CDS | 40.0% | |
| ! | GACAAAACATTGGTTGTGAG+TGG | + | chr4_4:35643928-35643947 | Msa0678840:CDS | 40.0% |
| CAAGTCGATGCACATTAAAC+AGG | + | chr4_4:35644139-35644158 | Msa0678840:CDS | 40.0% | |
| GATTTCGGAATGTATGTAGC+CGG | + | chr4_4:35644170-35644189 | Msa0678840:intron | 40.0% | |
| TCCAATTACCATCCATTTGC+CGG | - | chr4_4:35644192-35644211 | None:intergenic | 40.0% | |
| ATTGGATATTGGACCGAGAT+CGG | + | chr4_4:35644206-35644225 | Msa0678840:intron | 40.0% | |
| GGTACAAAGAAGCAAGGAAA+TGG | + | chr4_4:35644456-35644475 | Msa0678840:CDS | 40.0% | |
| AGAAGCAAGGAAATGGAATC+AGG | + | chr4_4:35644463-35644482 | Msa0678840:CDS | 40.0% | |
| GTGTGCTTGATTGTTGTAGA+CGG | + | chr4_4:35644554-35644573 | Msa0678840:intron | 40.0% | |
| ATTGTTGTAGACGGCAATTC+CGG | + | chr4_4:35644563-35644582 | Msa0678840:intron | 40.0% | |
| AACTTGGTTCCTATCAACAC+CGG | - | chr4_4:35644585-35644604 | None:intergenic | 40.0% | |
| AGCTCCCTATTGATATGCAA+TGG | + | chr4_4:35644619-35644638 | Msa0678840:CDS | 40.0% | |
| TCCTGATTTCACTGAAAACG+CGG | - | chr4_4:35644826-35644845 | None:intergenic | 40.0% | |
| CGTTTGTTTGAATTGGCGTT+AGG | - | chr4_4:35644905-35644924 | None:intergenic | 40.0% | |
| GATTCGGCGTTTGTTTGAAT+TGG | - | chr4_4:35644912-35644931 | None:intergenic | 40.0% | |
| !! | AGTTGGTTCTGTAAGGTTGT+AGG | + | chr4_4:35645053-35645072 | Msa0678840:intron | 40.0% |
| GCAATGTCAATTCAGGTGAA+AGG | + | chr4_4:35645345-35645364 | Msa0678840:intron | 40.0% | |
| TTCAGGTGAAAGGGATTGAT+AGG | + | chr4_4:35645355-35645374 | Msa0678840:intron | 40.0% | |
| ATCACCTGCTTATAGCATAG+TGG | + | chr4_4:35645511-35645530 | Msa0678840:intron | 40.0% | |
| !! | ACATAGATGTCGATTTGCTC+TGG | + | chr4_4:35645807-35645826 | Msa0678840:intron | 40.0% |
| ! | CATGGACTGACTGCTTATAA+TGG | - | chr4_4:35646036-35646055 | None:intergenic | 40.0% |
| ACAGGCAAGAACATATGCAA+AGG | + | chr4_4:35646197-35646216 | Msa0678840:intron | 40.0% | |
| !! | TGGTCGGTTGACTTACTTTT+TGG | - | chr4_4:35646423-35646442 | None:intergenic | 40.0% |
| CAATCGTCACACAAAAAGTG+TGG | + | chr4_4:35646543-35646562 | Msa0678840:three_prime_UTR | 40.0% | |
| CTAAACACGCACTAATTCTC+TGG | - | chr4_4:35646623-35646642 | None:intergenic | 40.0% | |
| CTGAGCGAAATGGAATGAAG+CGG | - | chr4_4:35643122-35643141 | None:intergenic | 45.0% | |
| GTGTATGTCTCTGAGCGAAA+TGG | - | chr4_4:35643132-35643151 | None:intergenic | 45.0% | |
| GAGCTCGAAGAATACATCTC+CGG | - | chr4_4:35643294-35643313 | None:intergenic | 45.0% | |
| GAGATGGCAATGCTGAATGT+GGG | - | chr4_4:35643381-35643400 | None:intergenic | 45.0% | |
| TGGTTGCAGAGAAGTTTCGA+CGG | - | chr4_4:35643428-35643447 | None:intergenic | 45.0% | |
| CACTGATACCGGACACAATA+TGG | - | chr4_4:35643704-35643723 | None:intergenic | 45.0% | |
| GAATGAAAAAGAGCAGGGAG+TGG | + | chr4_4:35643879-35643898 | Msa0678840:CDS | 45.0% | |
| ATCAGAAGACCAGCTTCCAA+TGG | + | chr4_4:35644074-35644093 | Msa0678840:CDS | 45.0% | |
| ACTGAGTCCTTACATGCCAT+TGG | - | chr4_4:35644093-35644112 | None:intergenic | 45.0% | |
| AATGGCATGTAAGGACTCAG+TGG | + | chr4_4:35644092-35644111 | Msa0678840:CDS | 45.0% | |
| GAATGTATGTAGCCGGCAAA+TGG | + | chr4_4:35644177-35644196 | Msa0678840:intron | 45.0% | |
| ! | ATGTGCTGCTGGGTAATTGT+GGG | + | chr4_4:35644301-35644320 | Msa0678840:intron | 45.0% |
| TGGGATGGTACAAAGAAGCA+AGG | + | chr4_4:35644450-35644469 | Msa0678840:CDS | 45.0% | |
| !! | GTCGTGATTTTAACCTCACG+TGG | - | chr4_4:35644797-35644816 | None:intergenic | 45.0% |
| ! | TCCGCGTTTTCAGTGAAATC+AGG | + | chr4_4:35644822-35644841 | Msa0678840:intron | 45.0% |
| ATATGCATGGGATCCACAAG+TGG | - | chr4_4:35645539-35645558 | None:intergenic | 45.0% | |
| CAAAACTCTTCGACCTACCT+TGG | + | chr4_4:35646295-35646314 | Msa0678840:CDS | 45.0% | |
| AGATTCCTTTCCACTGTCCA+AGG | - | chr4_4:35646315-35646334 | None:intergenic | 45.0% | |
| GGAGAATCAGTACATGGCTA+AGG | - | chr4_4:35646867-35646886 | None:intergenic | 45.0% | |
| !!! | CTCACACAGTTTTGGAGTTG+TGG | + | chr4_4:35646905-35646924 | Msa0678840:three_prime_UTR | 45.0% |
| !! | AAATTAAAATCATATAAATA+TGG | + | chr4_4:35646000-35646019 | Msa0678840:intron | 5.0% |
| ATCTCCGGAGCAACGATACA+CGG | - | chr4_4:35643279-35643298 | None:intergenic | 50.0% | |
| CTGTACGTAGCATTAGCACC+TGG | - | chr4_4:35643349-35643368 | None:intergenic | 50.0% | |
| GGAGATGGCAATGCTGAATG+TGG | - | chr4_4:35643382-35643401 | None:intergenic | 50.0% | |
| ATTCAGCATTGCCATCTCCG+CGG | + | chr4_4:35643383-35643402 | Msa0678840:CDS | 50.0% | |
| TTGCAGAGAAGTTTCGACGG+TGG | - | chr4_4:35643425-35643444 | None:intergenic | 50.0% | |
| ACTGGGACACGACTAATCTG+AGG | - | chr4_4:35643594-35643613 | None:intergenic | 50.0% | |
| ! | GATTAGTCGTGTCCCAGTGT+CGG | + | chr4_4:35643596-35643615 | Msa0678840:intron | 50.0% |
| ! | GTCGGTGTCCATATTGTGTC+CGG | + | chr4_4:35643693-35643712 | Msa0678840:intron | 50.0% |
| GTGTCCGGTATCAGTGTTCA+AGG | + | chr4_4:35643708-35643727 | Msa0678840:intron | 50.0% | |
| CCTTACATGCCATTGGAAGC+TGG | - | chr4_4:35644086-35644105 | None:intergenic | 50.0% | |
| CCAGCTTCCAATGGCATGTA+AGG | + | chr4_4:35644083-35644102 | Msa0678840:CDS | 50.0% | |
| GTATGTAGCCGGCAAATGGA+TGG | + | chr4_4:35644181-35644200 | Msa0678840:intron | 50.0% | |
| GCCGGCAAATGGATGGTAAT+TGG | + | chr4_4:35644188-35644207 | Msa0678840:intron | 50.0% | |
| ATTACCCAGCAGCACATCAG+TGG | - | chr4_4:35644298-35644317 | None:intergenic | 50.0% | |
| ! | GATGTGCTGCTGGGTAATTG+TGG | + | chr4_4:35644300-35644319 | Msa0678840:intron | 50.0% |
| !! | ACGGCAATTCCGGTGTTGAT+AGG | + | chr4_4:35644573-35644592 | Msa0678840:CDS | 50.0% |
| AGCGATTACCTCACTAGCGA+TGG | - | chr4_4:35644646-35644665 | None:intergenic | 50.0% | |
| GAAAATCCGTCTTGAGGCTG+TGG | + | chr4_4:35644760-35644779 | Msa0678840:intron | 50.0% | |
| GGCACCACTATGCTATAAGC+AGG | - | chr4_4:35645518-35645537 | None:intergenic | 50.0% | |
| !! | TAGCATAGTGGTGCCACTTG+TGG | + | chr4_4:35645523-35645542 | Msa0678840:intron | 50.0% |
| GAATTCACGCATTCACGCAG+AGG | - | chr4_4:35645975-35645994 | None:intergenic | 50.0% | |
| GCGTGAATGCGTGAATTCAC+TGG | + | chr4_4:35645977-35645996 | Msa0678840:intron | 50.0% | |
| ACCTACCTTGGACAGTGGAA+AGG | + | chr4_4:35646307-35646326 | Msa0678840:CDS | 50.0% | |
| TCCTTTCCACTGTCCAAGGT+AGG | - | chr4_4:35646311-35646330 | None:intergenic | 50.0% | |
| ! | CTTGGGGCAATCGAGTTGTT+AGG | + | chr4_4:35646475-35646494 | Msa0678840:three_prime_UTR | 50.0% |
| ACAGCCGTGTATCGTTGCTC+CGG | + | chr4_4:35643272-35643291 | Msa0678840:CDS | 55.0% | |
| TTCCAGAGCAGGCAAGCAGT+CGG | - | chr4_4:35643321-35643340 | None:intergenic | 55.0% | |
| TTCAGCATTGCCATCTCCGC+GGG | + | chr4_4:35643384-35643403 | Msa0678840:CDS | 55.0% | |
| AAGAGCAGGGAGTGGAACAG+AGG | + | chr4_4:35643887-35643906 | Msa0678840:CDS | 55.0% | |
| CAGGGAGTGGAACAGAGGAA+AGG | + | chr4_4:35643892-35643911 | Msa0678840:CDS | 55.0% | |
| AGCAGCACATCAGTGGCTGA+TGG | - | chr4_4:35644291-35644310 | None:intergenic | 55.0% | |
| ATCAGCCACTGATGTGCTGC+TGG | + | chr4_4:35644290-35644309 | Msa0678840:intron | 55.0% | |
| ! | TCAGCCACTGATGTGCTGCT+GGG | + | chr4_4:35644291-35644310 | Msa0678840:intron | 55.0% |
| GCAATGGACCATCGCTAGTG+AGG | + | chr4_4:35644635-35644654 | Msa0678840:CDS | 55.0% | |
| AATCCGTCTTGAGGCTGTGG+CGG | + | chr4_4:35644763-35644782 | Msa0678840:intron | 55.0% | |
| TGGGTAGGCTTGTCTCCCTT+AGG | - | chr4_4:35646075-35646094 | None:intergenic | 55.0% | |
| CTTCGACCTACCTTGGACAG+TGG | + | chr4_4:35646302-35646321 | Msa0678840:CDS | 55.0% | |
| ! | ACCTGGCTGCTTTCCAGAGC+AGG | - | chr4_4:35643332-35643351 | None:intergenic | 60.0% |
| GAATCCAACAGCGAAGCCCG+CGG | - | chr4_4:35643403-35643422 | None:intergenic | 60.0% | |
| CACGACACGTGTCCGACACT+GGG | - | chr4_4:35643611-35643630 | None:intergenic | 60.0% | |
| ACACGACACGTGTCCGACAC+TGG | - | chr4_4:35643612-35643631 | None:intergenic | 60.0% | |
| GTCACTCCTTCGCGCTGCGA+AGG | + | chr4_4:35643242-35643261 | Msa0678840:CDS | 65.0% | |
| ACTCCTTCGCGCTGCGAAGG+AGG | + | chr4_4:35643245-35643264 | Msa0678840:CDS | 65.0% | |
| AAGCCTCCTTCGCAGCGCGA+AGG | - | chr4_4:35643251-35643270 | None:intergenic | 65.0% | |
| ! | CACCGACTGCTTGCCTGCTC+TGG | + | chr4_4:35643316-35643335 | Msa0678840:CDS | 65.0% |
| !! | GCCTGCTCTGGAAAGCAGCC+AGG | + | chr4_4:35643328-35643347 | Msa0678840:CDS | 65.0% |
| AACAGCGAAGCCCGCGGAGA+TGG | - | chr4_4:35643397-35643416 | None:intergenic | 65.0% | |
| ATCTCCGCGGGCTTCGCTGT+TGG | + | chr4_4:35643396-35643415 | Msa0678840:CDS | 65.0% | |
| CCACCGCCACAGCCTCAAGA+CGG | - | chr4_4:35644769-35644788 | None:intergenic | 65.0% | |
| CGTCTTGAGGCTGTGGCGGT+GGG | + | chr4_4:35644767-35644786 | Msa0678840:intron | 65.0% | |
| GGCGGTGGGAATTCCACGTG+AGG | + | chr4_4:35644781-35644800 | Msa0678840:intron | 65.0% | |
| CCGTCTTGAGGCTGTGGCGG+TGG | + | chr4_4:35644766-35644785 | Msa0678840:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 35642891 | 35647019 | 35642891 | ID=Msa0678840;Name=Msa0678840 |
| chr4_4 | mRNA | 35642891 | 35647019 | 35642891 | ID=Msa0678840-mRNA-1;Parent=Msa0678840;Name=Msa0678840-mRNA-1;_AED=0.08;_eAED=0.08;_QI=326|1|1|1|0.83|0.71|7|631|276 |
| chr4_4 | exon | 35642891 | 35643540 | 35642891 | ID=Msa0678840-mRNA-1:exon:8439;Parent=Msa0678840-mRNA-1 |
| chr4_4 | exon | 35643865 | 35643985 | 35643865 | ID=Msa0678840-mRNA-1:exon:8440;Parent=Msa0678840-mRNA-1 |
| chr4_4 | exon | 35644064 | 35644160 | 35644064 | ID=Msa0678840-mRNA-1:exon:8441;Parent=Msa0678840-mRNA-1 |
| chr4_4 | exon | 35644445 | 35644484 | 35644445 | ID=Msa0678840-mRNA-1:exon:8442;Parent=Msa0678840-mRNA-1 |
| chr4_4 | exon | 35644573 | 35644656 | 35644573 | ID=Msa0678840-mRNA-1:exon:8443;Parent=Msa0678840-mRNA-1 |
| chr4_4 | exon | 35646201 | 35646694 | 35646201 | ID=Msa0678840-mRNA-1:exon:8444;Parent=Msa0678840-mRNA-1 |
| chr4_4 | exon | 35646718 | 35647019 | 35646718 | ID=Msa0678840-mRNA-1:exon:8445;Parent=Msa0678840-mRNA-1 |
| chr4_4 | five_prime_UTR | 35642891 | 35643216 | 35642891 | ID=Msa0678840-mRNA-1:five_prime_utr;Parent=Msa0678840-mRNA-1 |
| chr4_4 | CDS | 35643217 | 35643540 | 35643217 | ID=Msa0678840-mRNA-1:cds;Parent=Msa0678840-mRNA-1 |
| chr4_4 | CDS | 35643865 | 35643985 | 35643865 | ID=Msa0678840-mRNA-1:cds;Parent=Msa0678840-mRNA-1 |
| chr4_4 | CDS | 35644064 | 35644160 | 35644064 | ID=Msa0678840-mRNA-1:cds;Parent=Msa0678840-mRNA-1 |
| chr4_4 | CDS | 35644445 | 35644484 | 35644445 | ID=Msa0678840-mRNA-1:cds;Parent=Msa0678840-mRNA-1 |
| chr4_4 | CDS | 35644573 | 35644656 | 35644573 | ID=Msa0678840-mRNA-1:cds;Parent=Msa0678840-mRNA-1 |
| chr4_4 | CDS | 35646201 | 35646365 | 35646201 | ID=Msa0678840-mRNA-1:cds;Parent=Msa0678840-mRNA-1 |
| chr4_4 | three_prime_UTR | 35646366 | 35646694 | 35646366 | ID=Msa0678840-mRNA-1:three_prime_utr;Parent=Msa0678840-mRNA-1 |
| chr4_4 | three_prime_UTR | 35646718 | 35647019 | 35646718 | ID=Msa0678840-mRNA-1:three_prime_utr;Parent=Msa0678840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
