Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0640410 | XP_003605903.1 | 97.826 | 276 | 6 | 0 | 1 | 276 | 1 | 276 | 0.0 | 565 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0640410 | sp|P87027|SPG1_SCHPO | 45.455 | 187 | 102 | 0 | 90 | 276 | 9 | 195 | 2.62e-57 | 185 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0640410 | G7JDG8 | 97.826 | 276 | 6 | 0 | 1 | 276 | 1 | 276 | 0.0 | 565 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0640410 | Msa0678840 | 0.881424 | 2.429265e-70 | -8.615850e-47 |
| Msa0543880 | Msa0640410 | 0.855037 | 8.254090e-62 | -8.615850e-47 |
| Msa0599740 | Msa0640410 | 0.860129 | 2.561330e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0640410 | MtrunA17_Chr4g0024431 | 97.826 | 276 | 6 | 0 | 1 | 276 | 1 | 276 | 0.0 | 565 |
| Msa0640410 | MtrunA17_Chr5g0443631 | 63.707 | 259 | 91 | 1 | 21 | 276 | 31 | 289 | 4.85e-111 | 322 |
| Msa0640410 | MtrunA17_Chr3g0109721 | 30.539 | 167 | 106 | 4 | 93 | 256 | 12 | 171 | 3.69e-14 | 69.7 |
| Msa0640410 | MtrunA17_Chr5g0433561 | 29.670 | 182 | 112 | 5 | 78 | 256 | 3 | 171 | 5.79e-14 | 68.9 |
| Msa0640410 | MtrunA17_Chr7g0265001 | 26.667 | 180 | 124 | 3 | 90 | 266 | 15 | 189 | 2.30e-13 | 67.8 |
| Msa0640410 | MtrunA17_Chr8g0390561 | 27.879 | 165 | 113 | 2 | 93 | 256 | 11 | 170 | 4.58e-13 | 66.6 |
| Msa0640410 | MtrunA17_Chr1g0180291 | 26.667 | 180 | 123 | 4 | 90 | 266 | 13 | 186 | 1.33e-12 | 65.5 |
| Msa0640410 | MtrunA17_Chr4g0055081 | 24.260 | 169 | 122 | 2 | 89 | 256 | 7 | 170 | 1.43e-12 | 65.1 |
| Msa0640410 | MtrunA17_Chr5g0400131 | 24.260 | 169 | 122 | 2 | 89 | 256 | 7 | 170 | 2.70e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0640410 | AT3G21700.3 | 60.269 | 297 | 92 | 5 | 1 | 276 | 1 | 292 | 2.83e-111 | 323 |
| Msa0640410 | AT3G21700.1 | 59.933 | 297 | 92 | 6 | 1 | 276 | 1 | 291 | 2.19e-109 | 318 |
| Msa0640410 | AT5G54840.1 | 52.500 | 280 | 124 | 5 | 1 | 276 | 12 | 286 | 3.62e-91 | 272 |
| Msa0640410 | AT3G21700.2 | 52.459 | 244 | 89 | 6 | 1 | 223 | 1 | 238 | 3.37e-68 | 212 |
| Msa0640410 | AT5G54840.2 | 44.444 | 198 | 101 | 5 | 1 | 194 | 12 | 204 | 2.23e-40 | 139 |
| Msa0640410 | AT5G54840.3 | 55.714 | 140 | 57 | 3 | 59 | 194 | 66 | 204 | 7.71e-40 | 139 |
| Msa0640410 | AT4G19640.1 | 28.824 | 170 | 111 | 4 | 90 | 256 | 9 | 171 | 1.87e-14 | 70.9 |
| Msa0640410 | AT5G45130.1 | 28.824 | 170 | 111 | 4 | 90 | 256 | 9 | 171 | 4.90e-14 | 69.7 |
| Msa0640410 | AT2G44610.1 | 25.444 | 169 | 120 | 2 | 89 | 256 | 7 | 170 | 3.26e-13 | 67.4 |
| Msa0640410 | AT5G45130.2 | 29.268 | 164 | 106 | 4 | 96 | 256 | 23 | 179 | 5.57e-13 | 67.0 |
| Msa0640410 | AT5G03530.2 | 27.222 | 180 | 122 | 4 | 90 | 266 | 12 | 185 | 8.45e-13 | 66.2 |
| Msa0640410 | AT5G03530.1 | 27.222 | 180 | 122 | 4 | 90 | 266 | 12 | 185 | 8.45e-13 | 66.2 |
| Msa0640410 | AT5G59150.1 | 26.667 | 180 | 125 | 3 | 81 | 259 | 3 | 176 | 1.83e-12 | 65.5 |
| Msa0640410 | AT1G07410.1 | 24.852 | 169 | 121 | 2 | 92 | 259 | 13 | 176 | 5.62e-11 | 61.2 |
Find 77 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAAACTGTAAGGGTAATT+TGG | 0.157269 | 4_3:+39036334 | None:intergenic |
| TGAAACTGTAAGGGTAATTT+GGG | 0.232830 | 4_3:+39036335 | None:intergenic |
| CACGTATATCCTATTGTATC+TGG | 0.293441 | 4_3:-39035407 | Msa0640410:CDS |
| AAATGAATTGGATACTGATT+TGG | 0.296548 | 4_3:-39035853 | Msa0640410:CDS |
| CTCAGCCATGAAAATGAAAA+AGG | 0.319557 | 4_3:+39036285 | None:intergenic |
| ACCTGGCTGCTTGCCTGAGC+AGG | 0.330688 | 4_3:+39035986 | None:intergenic |
| GCCTGCTCAGGCAAGCAGCC+AGG | 0.335224 | 4_3:-39035987 | Msa0640410:CDS |
| CACCGACTGCTTGCCTGCTC+AGG | 0.346195 | 4_3:-39035999 | Msa0640410:CDS |
| TTGTTGGGTGATTGCCAAAT+TGG | 0.353624 | 4_3:-39035813 | Msa0640410:CDS |
| ATTGTTGTAGACGGCAATTC+CGG | 0.368449 | 4_3:-39034806 | Msa0640410:intron |
| TTCACTCAAAATTAGCTTGT+TGG | 0.369785 | 4_3:-39035829 | Msa0640410:CDS |
| TCACTCAAAATTAGCTTGTT+GGG | 0.374517 | 4_3:-39035828 | Msa0640410:CDS |
| ATGGTCCATTGCATATCAAT+AGG | 0.376812 | 4_3:+39034745 | None:intergenic |
| TTCATAGTATTGAAACTGTA+AGG | 0.377115 | 4_3:+39036325 | None:intergenic |
| ATCTCCGCGGGCTTCGCTGT+TGG | 0.390597 | 4_3:-39035919 | Msa0640410:CDS |
| CCAGCTTCCAATGGCATGTA+AGG | 0.422047 | 4_3:-39035277 | Msa0640410:CDS |
| GGTACAAAGAAGCAAGGAAA+TGG | 0.432118 | 4_3:-39034913 | Msa0640410:CDS |
| AAATTGGAATGGAATGGAAT+GGG | 0.439308 | 4_3:+39036230 | None:intergenic |
| CAAGTCGATGCACATTAAAC+AGG | 0.439545 | 4_3:-39035221 | Msa0640410:intron |
| AGAAGCAAGGAAATGGAATC+AGG | 0.446817 | 4_3:-39034906 | Msa0640410:intron |
| TTGTACTTCCCAGATACAAT+AGG | 0.464379 | 4_3:+39035398 | None:intergenic |
| CAAAACTCTTCGACTTACCT+TGG | 0.467610 | 4_3:-39033087 | Msa0640410:CDS |
| CTGAATGAAATCATCAAACT+TGG | 0.473260 | 4_3:+39034771 | None:intergenic |
| TAAACAAATCAAATTACATA+TGG | 0.475223 | 4_3:-39032452 | Msa0640410:three_prime_UTR |
| ACGGCAATTCCGGTGTTGAT+AGG | 0.475548 | 4_3:-39034796 | Msa0640410:CDS |
| GTGTATGTCTCTGAGCGAAA+TGG | 0.480039 | 4_3:+39036183 | None:intergenic |
| AAAATTGGAATGGAATGGAA+TGG | 0.481701 | 4_3:+39036229 | None:intergenic |
| TTCAGCATTGCCATCTCCGC+GGG | 0.486533 | 4_3:-39035931 | Msa0640410:CDS |
| AACAGCGAAGCCCGCGGAGA+TGG | 0.486569 | 4_3:+39035921 | None:intergenic |
| GTTTATTTCAGCAGACACTT+TGG | 0.492544 | 4_3:+39032470 | None:intergenic |
| ACTCCTTCGCGCTGCGAAGG+AGG | 0.493460 | 4_3:-39036070 | Msa0640410:CDS |
| GAGGAAAGGACCAAATCAAA+TGG | 0.496937 | 4_3:-39035454 | Msa0640410:CDS |
| TATTTGTACATGTTTAGATT+CGG | 0.497192 | 4_3:-39032416 | Msa0640410:three_prime_UTR |
| TTTATTTCAGTGTTCTGGGA+TGG | 0.498640 | 4_3:-39034934 | Msa0640410:intron |
| GTCACTCCTTCGCGCTGCGA+AGG | 0.504957 | 4_3:-39036073 | Msa0640410:CDS |
| TGCCTGAGCAGGCAAGCAGT+CGG | 0.509410 | 4_3:+39035997 | None:intergenic |
| CCTTACATGCCATTGGAAGC+TGG | 0.517454 | 4_3:+39035277 | None:intergenic |
| GTGGAAAGGAATCTAAATGT+TGG | 0.519478 | 4_3:-39033061 | Msa0640410:CDS |
| TGGAATGGAATGGGGTTGGA+TGG | 0.522033 | 4_3:+39036239 | None:intergenic |
| AGATTCCTTTCCACTGTCCA+AGG | 0.525285 | 4_3:+39033070 | None:intergenic |
| ACTGAGTCCTTACATGCCAT+TGG | 0.527947 | 4_3:+39035270 | None:intergenic |
| GGAATGGAATGGAATGGGGT+TGG | 0.532214 | 4_3:+39036235 | None:intergenic |
| TGGTCCATTGCATATCAATA+GGG | 0.535828 | 4_3:+39034746 | None:intergenic |
| GTGTTGCAGGTGAAATATGT+TGG | 0.547304 | 4_3:-39035504 | Msa0640410:intron |
| CTTCGACTTACCTTGGACAG+TGG | 0.548530 | 4_3:-39033080 | Msa0640410:CDS |
| AGCTCCCTATTGATATGCAA+TGG | 0.560194 | 4_3:-39034750 | Msa0640410:CDS |
| TGTTGCAGGTGAAATATGTT+GGG | 0.562818 | 4_3:-39035503 | Msa0640410:intron |
| ACGTATATCCTATTGTATCT+GGG | 0.564779 | 4_3:-39035406 | Msa0640410:CDS |
| AAATCAAATGGACAAAACAT+TGG | 0.567322 | 4_3:-39035442 | Msa0640410:CDS |
| AAGAGCAGGGAGTGGAACAG+AGG | 0.569125 | 4_3:-39035473 | Msa0640410:CDS |
| CTGTACGTAGCATTAGCACC+TGG | 0.570834 | 4_3:+39035969 | None:intergenic |
| TATTGTATCTGGGAAGTACA+AGG | 0.574671 | 4_3:-39035396 | Msa0640410:intron |
| ACTTACCTTGGACAGTGGAA+AGG | 0.576381 | 4_3:-39033075 | Msa0640410:CDS |
| ATCTCCGGAGCAACGATACA+CGG | 0.577259 | 4_3:+39036039 | None:intergenic |
| AAGCCTCCTTCGCAGCGCGA+AGG | 0.580558 | 4_3:+39036067 | None:intergenic |
| ACAGCCGTGTATCGTTGCTC+CGG | 0.583287 | 4_3:-39036043 | Msa0640410:CDS |
| GAGCTCGAAGAATACATCTC+CGG | 0.586436 | 4_3:+39036024 | None:intergenic |
| CAGGGAGTGGAACAGAGGAA+AGG | 0.595988 | 4_3:-39035468 | Msa0640410:CDS |
| ATCAGAAGACCAGCTTCCAA+TGG | 0.601240 | 4_3:-39035286 | Msa0640410:CDS |
| GGAGATGGCAATGCTGAATG+TGG | 0.604089 | 4_3:+39035936 | None:intergenic |
| ATTCAGCATTGCCATCTCCG+CGG | 0.613287 | 4_3:-39035932 | Msa0640410:CDS |
| GCAATGGACCATCGCTAGTG+AGG | 0.615352 | 4_3:-39034734 | Msa0640410:intron |
| TCATAGTATTGAAACTGTAA+GGG | 0.616811 | 4_3:+39036326 | None:intergenic |
| AATTGGAATGGAATGGAATG+GGG | 0.618861 | 4_3:+39036231 | None:intergenic |
| AGCGATTACCTCACTAGCGA+TGG | 0.627900 | 4_3:+39034726 | None:intergenic |
| GACAAAACATTGGTTGTGAG+TGG | 0.635995 | 4_3:-39035432 | Msa0640410:CDS |
| ACAGGCAAGAACATATGCAA+AGG | 0.636144 | 4_3:-39033185 | Msa0640410:intron |
| CTGAGCGAAATGGAATGAAG+CGG | 0.640344 | 4_3:+39036193 | None:intergenic |
| TGGGATGGTACAAAGAAGCA+AGG | 0.641092 | 4_3:-39034919 | Msa0640410:CDS |
| AACTTGGTTCCTATCAACAC+CGG | 0.647380 | 4_3:+39034787 | None:intergenic |
| TGCACTTGAAAAGAACAAAG+TGG | 0.664540 | 4_3:+39033153 | None:intergenic |
| GAGATGGCAATGCTGAATGT+GGG | 0.664888 | 4_3:+39035937 | None:intergenic |
| TTGCAGAGAAGTTTCGACGG+TGG | 0.670379 | 4_3:+39035893 | None:intergenic |
| TGGTTGCAGAGAAGTTTCGA+CGG | 0.671139 | 4_3:+39035890 | None:intergenic |
| GAATCCAACAGCGAAGCCCG+CGG | 0.676951 | 4_3:+39035915 | None:intergenic |
| GAAACTGTAAGGGTAATTTG+GGG | 0.677919 | 4_3:+39036336 | None:intergenic |
| AATGGCATGTAAGGACTCAG+TGG | 0.696623 | 4_3:-39035268 | Msa0640410:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTAATTTGATGATTTT+AGG | - | chr4_3:39033466-39033485 | Msa0640410:intron | 10.0% |
| !! | ATGTTTAATATTATATATGA+AGG | - | chr4_3:39033514-39033533 | Msa0640410:intron | 10.0% |
| !! | TGTTTAATATTATATATGAA+GGG | - | chr4_3:39033515-39033534 | Msa0640410:intron | 10.0% |
| !! | TATGAATATAAATTTATAAG+AGG | - | chr4_3:39034473-39034492 | Msa0640410:intron | 10.0% |
| !! | ATGAATATAAATTTATAAGA+GGG | - | chr4_3:39034474-39034493 | Msa0640410:intron | 10.0% |
| !! | AATTGTAAATAAATGATTAT+GGG | + | chr4_3:39035563-39035582 | None:intergenic | 10.0% |
| !! | TAATTGTAAATAAATGATTA+TGG | + | chr4_3:39035564-39035583 | None:intergenic | 10.0% |
| !! | AGAATTAAAAAAAATTGGAA+TGG | + | chr4_3:39032616-39032635 | None:intergenic | 15.0% |
| !! | GGAATAGAATTAAAAAAAAT+TGG | + | chr4_3:39032621-39032640 | None:intergenic | 15.0% |
| !! | GTTTAATATTATATATGAAG+GGG | - | chr4_3:39033516-39033535 | Msa0640410:intron | 15.0% |
| !! | TTAAGAATGAAAAAATGATT+CGG | + | chr4_3:39034390-39034409 | None:intergenic | 15.0% |
| !! | TCAATGTTTATCTTAAAATA+TGG | + | chr4_3:39034547-39034566 | None:intergenic | 15.0% |
| !! | CATATACTATAAAGTTAAAT+TGG | + | chr4_3:39034700-39034719 | None:intergenic | 15.0% |
| !! | TGTTTAATAATCATAATCAT+AGG | + | chr4_3:39034758-39034777 | None:intergenic | 15.0% |
| !! | ATTCATGATCAATTTAATTA+TGG | - | chr4_3:39035171-39035190 | Msa0640410:intron | 15.0% |
| !! | TAAACAAATCAAATTACATA+TGG | - | chr4_3:39036380-39036399 | Msa0640410:five_prime_UTR | 15.0% |
| !! | TAAAAAAAATTGGAATGGAA+TGG | + | chr4_3:39032611-39032630 | None:intergenic | 20.0% |
| !! | TTAAGTGTAATTACAAGTTT+CGG | + | chr4_3:39033156-39033175 | None:intergenic | 20.0% |
| !! | TTAAAAATTATTAGTTGTGC+CGG | - | chr4_3:39033188-39033207 | Msa0640410:intron | 20.0% |
| !! | TTTCTGATGTCAATTATATT+TGG | - | chr4_3:39033822-39033841 | Msa0640410:intron | 20.0% |
| !!! | AATCAGGTAACATATTATTT+TGG | - | chr4_3:39033942-39033961 | Msa0640410:intron | 20.0% |
| !!! | CACTTTTGATTAAAATTCAA+TGG | + | chr4_3:39033995-39034014 | None:intergenic | 20.0% |
| !!! | CAATCTTCTAAAAATTAAGA+TGG | + | chr4_3:39034204-39034223 | None:intergenic | 20.0% |
| !! | AAATTAGTAATAGTGTCAAT+AGG | + | chr4_3:39034894-39034913 | None:intergenic | 20.0% |
| !! | ACTATTACTAATTTCTTTGT+AGG | - | chr4_3:39034900-39034919 | Msa0640410:intron | 20.0% |
| !! | CTATTACTAATTTCTTTGTA+GGG | - | chr4_3:39034901-39034920 | Msa0640410:intron | 20.0% |
| !!! | TGACTTTTGTCAAAATATTA+TGG | - | chr4_3:39035126-39035145 | Msa0640410:intron | 20.0% |
| !! | CGATCTAATAATTATTAATG+TGG | + | chr4_3:39035316-39035335 | None:intergenic | 20.0% |
| !!! | GAAAAACCAAATTTGAAATA+TGG | + | chr4_3:39035351-39035370 | None:intergenic | 20.0% |
| !! | TAAATAAATGATTATGGGTT+GGG | + | chr4_3:39035558-39035577 | None:intergenic | 20.0% |
| !! | TATTTGTACATGTTTAGATT+CGG | - | chr4_3:39036416-39036435 | Msa0640410:five_prime_UTR | 20.0% |
| !! | TCATAGTATTGAAACTGTAA+GGG | + | chr4_3:39032509-39032528 | None:intergenic | 25.0% |
| !! | TTCATAGTATTGAAACTGTA+AGG | + | chr4_3:39032510-39032529 | None:intergenic | 25.0% |
| !! | TCAGACTTTTGTCTAAAAAA+TGG | - | chr4_3:39032737-39032756 | Msa0640410:intron | 25.0% |
| !! | TGTTTTTCACACAAATGAAT+TGG | - | chr4_3:39032967-39032986 | Msa0640410:intron | 25.0% |
| !! | AAATGAATTGGATACTGATT+TGG | - | chr4_3:39032979-39032998 | Msa0640410:three_prime_UTR | 25.0% |
| !!! | AAAAACTGGTTTTTCCAATT+TGG | + | chr4_3:39033036-39033055 | None:intergenic | 25.0% |
| !!! | AATTGGAAAAACCAGTTTTT+TGG | - | chr4_3:39033036-39033055 | Msa0640410:exon | 25.0% |
| ! | TCATATACTTACCAAAAAAC+TGG | + | chr4_3:39033050-39033069 | None:intergenic | 25.0% |
| !! | AATGTTTTGTCCATTTGATT+TGG | + | chr4_3:39033391-39033410 | None:intergenic | 25.0% |
| ! | AAATCAAATGGACAAAACAT+TGG | - | chr4_3:39033390-39033409 | Msa0640410:intron | 25.0% |
| ! | AATATTATATATGAAGGGGA+TGG | - | chr4_3:39033520-39033539 | Msa0640410:intron | 25.0% |
| ! | AAACAGGTAATTCTCAAATT+CGG | - | chr4_3:39033627-39033646 | Msa0640410:intron | 25.0% |
| ! | CTGAAATAAAACCAAACAAT+TGG | + | chr4_3:39033888-39033907 | None:intergenic | 25.0% |
| !!! | TCAATCTTCATCTTTTAAGT+TGG | - | chr4_3:39034498-39034517 | Msa0640410:intron | 25.0% |
| !!! | TAACAACGTTTTATTCCAAA+AGG | - | chr4_3:39034586-39034605 | Msa0640410:intron | 25.0% |
| ! | ACATGTAAGACTAATCAATT+TGG | - | chr4_3:39034640-39034659 | Msa0640410:intron | 25.0% |
| !! | TATTCAGCTTTTCTCAATAA+AGG | + | chr4_3:39034673-39034692 | None:intergenic | 25.0% |
| ! | TAGGAATGACAAAACAATAA+AGG | + | chr4_3:39034739-39034758 | None:intergenic | 25.0% |
| ! | TTATTTACCAATTTGGTCAA+TGG | + | chr4_3:39035238-39035257 | None:intergenic | 25.0% |
| !!! | TAGAGTGTTATTTACCAATT+TGG | + | chr4_3:39035245-39035264 | None:intergenic | 25.0% |
| ! | AACGATCCATATTTCAAATT+TGG | - | chr4_3:39035342-39035361 | Msa0640410:intron | 25.0% |
| ! | GTAAATAAATGATTATGGGT+TGG | + | chr4_3:39035559-39035578 | None:intergenic | 25.0% |
| ! | CATTTGAACATTGAATTAAC+AGG | - | chr4_3:39035629-39035648 | Msa0640410:intron | 25.0% |
| !! | GATTTTCAGAAATCAATGAT+GGG | + | chr4_3:39035801-39035820 | None:intergenic | 25.0% |
| !! | AGATTTTCAGAAATCAATGA+TGG | + | chr4_3:39035802-39035821 | None:intergenic | 25.0% |
| !!! | TTGAACATTGTTATTTCCAT+TGG | + | chr4_3:39035969-39035988 | None:intergenic | 25.0% |
| !!! | ACAAAAAGTGTGGTTTTAAA+TGG | - | chr4_3:39036003-39036022 | Msa0640410:CDS | 25.0% |
| ! | CTAGTGAGAAATAAAAGTAA+TGG | - | chr4_3:39036040-39036059 | Msa0640410:CDS | 25.0% |
| !!! | TTATGGTTTTGTCAAACTTA+CGG | - | chr4_3:39036152-39036171 | Msa0640410:five_prime_UTR | 25.0% |
| ! | TCGATTCAAACATGTTATTA+AGG | - | chr4_3:39036175-39036194 | Msa0640410:five_prime_UTR | 25.0% |
| !!! | GTTTTTTATCTTTGCTTTGA+AGG | - | chr4_3:39036220-39036239 | Msa0640410:five_prime_UTR | 25.0% |
| ! | GAGAAATAAAAGGAAACAAA+AGG | + | chr4_3:39036318-39036337 | None:intergenic | 25.0% |
| ! | AAAACTGTGTGAGAAATAAA+AGG | + | chr4_3:39036328-39036347 | None:intergenic | 25.0% |
| !!! | TTTTATTTCTCACACAGTTT+TGG | - | chr4_3:39036327-39036346 | Msa0640410:five_prime_UTR | 25.0% |
| TGAAACTGTAAGGGTAATTT+GGG | + | chr4_3:39032500-39032519 | None:intergenic | 30.0% | |
| TTGAAACTGTAAGGGTAATT+TGG | + | chr4_3:39032501-39032520 | None:intergenic | 30.0% | |
| !! | AAGCTCCTTTTTCATTTTCA+TGG | - | chr4_3:39032542-39032561 | Msa0640410:intron | 30.0% |
| AAATTGGAATGGAATGGAAT+GGG | + | chr4_3:39032605-39032624 | None:intergenic | 30.0% | |
| AAAATTGGAATGGAATGGAA+TGG | + | chr4_3:39032606-39032625 | None:intergenic | 30.0% | |
| TCATTTGTGTGAAAAACAGA+TGG | + | chr4_3:39032965-39032984 | None:intergenic | 30.0% | |
| !! | TTCACTCAAAATTAGCTTGT+TGG | - | chr4_3:39033003-39033022 | Msa0640410:three_prime_UTR | 30.0% |
| !! | TCACTCAAAATTAGCTTGTT+GGG | - | chr4_3:39033004-39033023 | Msa0640410:three_prime_UTR | 30.0% |
| TTGTTGAAAAAATGTGTTGC+AGG | - | chr4_3:39033315-39033334 | Msa0640410:intron | 30.0% | |
| ACGTATATCCTATTGTATCT+GGG | - | chr4_3:39033426-39033445 | Msa0640410:intron | 30.0% | |
| ATATTTCCCACAATTATTCG+GGG | + | chr4_3:39033775-39033794 | None:intergenic | 30.0% | |
| GATATTTCCCACAATTATTC+GGG | + | chr4_3:39033776-39033795 | None:intergenic | 30.0% | |
| CGATATTTCCCACAATTATT+CGG | + | chr4_3:39033777-39033796 | None:intergenic | 30.0% | |
| GAAGAATCATTCCAATTGTT+TGG | - | chr4_3:39033874-39033893 | Msa0640410:intron | 30.0% | |
| !!! | TTGGTTTTATTTCAGTGTTC+TGG | - | chr4_3:39033893-39033912 | Msa0640410:intron | 30.0% |
| !!! | TGGTTTTATTTCAGTGTTCT+GGG | - | chr4_3:39033894-39033913 | Msa0640410:intron | 30.0% |
| CTGAATGAAATCATCAAACT+TGG | + | chr4_3:39034064-39034083 | None:intergenic | 30.0% | |
| !! | CTTTCTAGTTAGTGTATGTT+TGG | - | chr4_3:39034133-39034152 | Msa0640410:intron | 30.0% |
| CTCTAAATTCGTTGTATTCA+CGG | + | chr4_3:39034176-39034195 | None:intergenic | 30.0% | |
| ! | TTATGGAATTGAACTCCTTT+TGG | + | chr4_3:39034604-39034623 | None:intergenic | 30.0% |
| GTAACGTGTAAAGAAAATAG+GGG | + | chr4_3:39034872-39034891 | None:intergenic | 30.0% | |
| GGTAACGTGTAAAGAAAATA+GGG | + | chr4_3:39034873-39034892 | None:intergenic | 30.0% | |
| AGGTAACGTGTAAAGAAAAT+AGG | + | chr4_3:39034874-39034893 | None:intergenic | 30.0% | |
| TCTAATTGGAACACTATATG+CGG | + | chr4_3:39034951-39034970 | None:intergenic | 30.0% | |
| CAAATTTGTGGTATATGCAT+GGG | + | chr4_3:39035015-39035034 | None:intergenic | 30.0% | |
| CTAAAAAAGGACCAAATTTG+TGG | + | chr4_3:39035027-39035046 | None:intergenic | 30.0% | |
| AGTAGTCATTAGACTAAGAT+TGG | + | chr4_3:39035402-39035421 | None:intergenic | 30.0% | |
| !! | ACTGCTTATAATGGATTATG+GGG | + | chr4_3:39035491-39035510 | None:intergenic | 30.0% |
| !! | GACTGCTTATAATGGATTAT+GGG | + | chr4_3:39035492-39035511 | None:intergenic | 30.0% |
| !! | TGACTGCTTATAATGGATTA+TGG | + | chr4_3:39035493-39035512 | None:intergenic | 30.0% |
| ! | TTTGATGATCATTGATCCTA+AGG | - | chr4_3:39035520-39035539 | Msa0640410:intron | 30.0% |
| ! | TTGATGATCATTGATCCTAA+GGG | - | chr4_3:39035521-39035540 | Msa0640410:intron | 30.0% |
| TTGACTTAAACATCTCTACT+TGG | + | chr4_3:39035893-39035912 | None:intergenic | 30.0% | |
| AGTCAAAATATCATCACTCT+TGG | - | chr4_3:39035907-39035926 | Msa0640410:CDS | 30.0% | |
| GTCAAAATATCATCACTCTT+GGG | - | chr4_3:39035908-39035927 | Msa0640410:CDS | 30.0% | |
| TCAAAATATCATCACTCTTG+GGG | - | chr4_3:39035909-39035928 | Msa0640410:CDS | 30.0% | |
| TAGTGCGTGTTATGTTATTA+TGG | - | chr4_3:39036135-39036154 | Msa0640410:five_prime_UTR | 30.0% | |
| !! | ATGTTTCTGCTTTTACGCTT+CGG | + | chr4_3:39032448-39032467 | None:intergenic | 35.0% |
| GAAACTGTAAGGGTAATTTG+GGG | + | chr4_3:39032499-39032518 | None:intergenic | 35.0% | |
| CTCAGCCATGAAAATGAAAA+AGG | + | chr4_3:39032550-39032569 | None:intergenic | 35.0% | |
| AATTGGAATGGAATGGAATG+GGG | + | chr4_3:39032604-39032623 | None:intergenic | 35.0% | |
| TGTGTTCAATCTATGAAGCA+CGG | - | chr4_3:39033080-39033099 | Msa0640410:CDS | 35.0% | |
| TGTTGCAGGTGAAATATGTT+GGG | - | chr4_3:39033329-39033348 | Msa0640410:intron | 35.0% | |
| CACGTATATCCTATTGTATC+TGG | - | chr4_3:39033425-39033444 | Msa0640410:intron | 35.0% | |
| TTGTACTTCCCAGATACAAT+AGG | + | chr4_3:39033437-39033456 | None:intergenic | 35.0% | |
| ! | TATTGTATCTGGGAAGTACA+AGG | - | chr4_3:39033436-39033455 | Msa0640410:intron | 35.0% |
| TAACTACATTAGTCCGATCT+CGG | + | chr4_3:39033688-39033707 | None:intergenic | 35.0% | |
| !! | ACTGTTTGATTTTGATCCAC+CGG | - | chr4_3:39033737-39033756 | Msa0640410:intron | 35.0% |
| TATTTCCCACAATTATTCGG+GGG | + | chr4_3:39033774-39033793 | None:intergenic | 35.0% | |
| !! | TTTATTTCAGTGTTCTGGGA+TGG | - | chr4_3:39033898-39033917 | Msa0640410:intron | 35.0% |
| TGGTCCATTGCATATCAATA+GGG | + | chr4_3:39034089-39034108 | None:intergenic | 35.0% | |
| ATGGTCCATTGCATATCAAT+AGG | + | chr4_3:39034090-39034109 | None:intergenic | 35.0% | |
| TTAGTGTATGTTTGGTTGAG+CGG | - | chr4_3:39034141-39034160 | Msa0640410:intron | 35.0% | |
| AAGATTGAAAATCCGTCTTG+AGG | - | chr4_3:39034217-39034236 | Msa0640410:intron | 35.0% | |
| TCCTGATTTCACTAAAAACG+CGG | + | chr4_3:39034289-39034308 | None:intergenic | 35.0% | |
| GTCTCACATTGAATGAGATA+AGG | - | chr4_3:39034450-39034469 | Msa0640410:intron | 35.0% | |
| !!! | TCTTTTAAGTTGGTCCTGTA+AGG | - | chr4_3:39034508-39034527 | Msa0640410:intron | 35.0% |
| GATTATACCTACAACCTTAC+AGG | + | chr4_3:39034525-39034544 | None:intergenic | 35.0% | |
| ! | TCGATTTTGTAGGCTTCTTA+TGG | + | chr4_3:39034621-39034640 | None:intergenic | 35.0% |
| !!! | GTCTTACATGTCGATTTTGT+AGG | + | chr4_3:39034631-39034650 | None:intergenic | 35.0% |
| TTCAGTTGCAATGTCAATTC+AGG | - | chr4_3:39034802-39034821 | Msa0640410:intron | 35.0% | |
| CAATGTCAATTCAGGTGAAA+GGG | - | chr4_3:39034810-39034829 | Msa0640410:intron | 35.0% | |
| AAGGGATTGATAGGATTCTT+AGG | - | chr4_3:39034828-39034847 | Msa0640410:intron | 35.0% | |
| ! | AGCAGGTGATTGATTCTAAT+TGG | + | chr4_3:39034965-39034984 | None:intergenic | 35.0% |
| CCAAATTTGTGGTATATGCA+TGG | + | chr4_3:39035016-39035035 | None:intergenic | 35.0% | |
| CCATGCATATACCACAAATT+TGG | - | chr4_3:39035013-39035032 | Msa0640410:intron | 35.0% | |
| ACATGCACATGCACTAAAAA+AGG | + | chr4_3:39035040-39035059 | None:intergenic | 35.0% | |
| ! | TTTTAGTGCATGTGCATGTT+TGG | - | chr4_3:39035041-39035060 | Msa0640410:intron | 35.0% |
| GTGAAATCCATTGACCAAAT+TGG | - | chr4_3:39035228-39035247 | Msa0640410:CDS | 35.0% | |
| TTATTAATGTGGTGAGTGTG+TGG | + | chr4_3:39035305-39035324 | None:intergenic | 35.0% | |
| GGATCAATGATCATCAAACA+TGG | + | chr4_3:39035518-39035537 | None:intergenic | 35.0% | |
| !! | TAAATGATTATGGGTTGGGT+AGG | + | chr4_3:39035554-39035573 | None:intergenic | 35.0% |
| TGCACTTGAAAAGAACAAAG+TGG | + | chr4_3:39035682-39035701 | None:intergenic | 35.0% | |
| GTGGAAAGGAATCTAAATGT+TGG | - | chr4_3:39035771-39035790 | Msa0640410:intron | 35.0% | |
| CTTAAACATCTCTACTTGGT+CGG | + | chr4_3:39035889-39035908 | None:intergenic | 35.0% | |
| ! | CATAGACATGTCATTTCCAA+TGG | - | chr4_3:39035950-39035969 | Msa0640410:CDS | 35.0% |
| CAATCATCACACAAAAAGTG+TGG | - | chr4_3:39035993-39036012 | Msa0640410:CDS | 35.0% | |
| ACAAAAGGAGAATCAGTACA+TGG | + | chr4_3:39036303-39036322 | None:intergenic | 35.0% | |
| GTTTATTTCAGCAGACACTT+TGG | + | chr4_3:39036365-39036384 | None:intergenic | 35.0% | |
| TTGTTGGGTGATTGCCAAAT+TGG | - | chr4_3:39033019-39033038 | Msa0640410:three_prime_UTR | 40.0% | |
| !! | TATTAGTTGTGCCGGCTTAT+CGG | - | chr4_3:39033196-39033215 | Msa0640410:intron | 40.0% |
| CACATATACCAGACACAACA+CGG | + | chr4_3:39033225-39033244 | None:intergenic | 40.0% | |
| GTGTCTGGTATATGTGTTCA+AGG | - | chr4_3:39033229-39033248 | Msa0640410:intron | 40.0% | |
| GTGTTGCAGGTGAAATATGT+TGG | - | chr4_3:39033328-39033347 | Msa0640410:intron | 40.0% | |
| TGTTGGGAATGAAAAAGAGC+AGG | - | chr4_3:39033345-39033364 | Msa0640410:intron | 40.0% | |
| GTTGGGAATGAAAAAGAGCA+GGG | - | chr4_3:39033346-39033365 | Msa0640410:intron | 40.0% | |
| GAGGAAAGGACCAAATCAAA+TGG | - | chr4_3:39033378-39033397 | Msa0640410:intron | 40.0% | |
| ! | GACAAAACATTGGTTGTGAG+TGG | - | chr4_3:39033400-39033419 | Msa0640410:intron | 40.0% |
| CAAGTCGATGCACATTAAAC+AGG | - | chr4_3:39033611-39033630 | Msa0640410:intron | 40.0% | |
| GTTGGATATTAGACCGAGAT+CGG | - | chr4_3:39033672-39033691 | Msa0640410:intron | 40.0% | |
| TATGTACCCCCGAATAATTG+TGG | - | chr4_3:39033765-39033784 | Msa0640410:intron | 40.0% | |
| ATGTACCCCCGAATAATTGT+GGG | - | chr4_3:39033766-39033785 | Msa0640410:intron | 40.0% | |
| !! | ATTGTGGGAAATATCGACTC+TGG | - | chr4_3:39033781-39033800 | Msa0640410:intron | 40.0% |
| !! | TTGTGGGAAATATCGACTCT+GGG | - | chr4_3:39033782-39033801 | Msa0640410:intron | 40.0% |
| GGTACAAAGAAGCAAGGAAA+TGG | - | chr4_3:39033919-39033938 | Msa0640410:intron | 40.0% | |
| AGAAGCAAGGAAATGGAATC+AGG | - | chr4_3:39033926-39033945 | Msa0640410:intron | 40.0% | |
| GTGTGCTTGATTGTTGTAGA+CGG | - | chr4_3:39034017-39034036 | Msa0640410:intron | 40.0% | |
| ATTGTTGTAGACGGCAATTC+CGG | - | chr4_3:39034026-39034045 | Msa0640410:intron | 40.0% | |
| AACTTGGTTCCTATCAACAC+CGG | + | chr4_3:39034048-39034067 | None:intergenic | 40.0% | |
| AGCTCCCTATTGATATGCAA+TGG | - | chr4_3:39034082-39034101 | Msa0640410:intron | 40.0% | |
| !!! | TCCGCGTTTTTAGTGAAATC+AGG | - | chr4_3:39034285-39034304 | Msa0640410:intron | 40.0% |
| GATTCGGCGTTTGTTTGAAT+TGG | + | chr4_3:39034374-39034393 | None:intergenic | 40.0% | |
| GCAATGTCAATTCAGGTGAA+AGG | - | chr4_3:39034809-39034828 | Msa0640410:intron | 40.0% | |
| TTCAGGTGAAAGGGATTGAT+AGG | - | chr4_3:39034819-39034838 | Msa0640410:intron | 40.0% | |
| ATCACCTGCTTATAGCATAG+TGG | - | chr4_3:39034975-39034994 | Msa0640410:intron | 40.0% | |
| !! | ACATAGATGTCGATTTGCTC+TGG | - | chr4_3:39035271-39035290 | Msa0640410:CDS | 40.0% |
| ! | CATGGACTGACTGCTTATAA+TGG | + | chr4_3:39035500-39035519 | None:intergenic | 40.0% |
| ACAGGCAAGAACATATGCAA+AGG | - | chr4_3:39035647-39035666 | Msa0640410:intron | 40.0% | |
| CAAAACTCTTCGACTTACCT+TGG | - | chr4_3:39035745-39035764 | Msa0640410:intron | 40.0% | |
| !! | TGGTCGGTTGACTTACTTTT+TGG | + | chr4_3:39035873-39035892 | None:intergenic | 40.0% |
| CTGAGCGAAATGGAATGAAG+CGG | + | chr4_3:39032642-39032661 | None:intergenic | 45.0% | |
| GTGTATGTCTCTGAGCGAAA+TGG | + | chr4_3:39032652-39032671 | None:intergenic | 45.0% | |
| GAGCTCGAAGAATACATCTC+CGG | + | chr4_3:39032811-39032830 | None:intergenic | 45.0% | |
| GAGATGGCAATGCTGAATGT+GGG | + | chr4_3:39032898-39032917 | None:intergenic | 45.0% | |
| TGGTTGCAGAGAAGTTTCGA+CGG | + | chr4_3:39032945-39032964 | None:intergenic | 45.0% | |
| GAATGAAAAAGAGCAGGGAG+TGG | - | chr4_3:39033351-39033370 | Msa0640410:intron | 45.0% | |
| ATCAGAAGACCAGCTTCCAA+TGG | - | chr4_3:39033546-39033565 | Msa0640410:intron | 45.0% | |
| ACTGAGTCCTTACATGCCAT+TGG | + | chr4_3:39033565-39033584 | None:intergenic | 45.0% | |
| AATGGCATGTAAGGACTCAG+TGG | - | chr4_3:39033564-39033583 | Msa0640410:intron | 45.0% | |
| !! | TGTGTAGCGTTGATGGTAGT+TGG | - | chr4_3:39033654-39033673 | Msa0640410:intron | 45.0% |
| TGGGATGGTACAAAGAAGCA+AGG | - | chr4_3:39033913-39033932 | Msa0640410:intron | 45.0% | |
| !! | GTCGTGATTTTGACCTCATG+TGG | + | chr4_3:39034260-39034279 | None:intergenic | 45.0% |
| AGTTGGTCCTGTAAGGTTGT+AGG | - | chr4_3:39034515-39034534 | Msa0640410:intron | 45.0% | |
| ATATGCATGGGATCCACAAG+TGG | + | chr4_3:39035003-39035022 | None:intergenic | 45.0% | |
| ACTTACCTTGGACAGTGGAA+AGG | - | chr4_3:39035757-39035776 | Msa0640410:intron | 45.0% | |
| AGATTCCTTTCCACTGTCCA+AGG | + | chr4_3:39035765-39035784 | None:intergenic | 45.0% | |
| GGAGAATCAGTACATGGCTA+AGG | + | chr4_3:39036297-39036316 | None:intergenic | 45.0% | |
| !!! | CTCACACAGTTTTGGAGTTG+TGG | - | chr4_3:39036335-39036354 | Msa0640410:five_prime_UTR | 45.0% |
| !! | AAATTAAAATCATATAAATA+TGG | - | chr4_3:39035464-39035483 | Msa0640410:CDS | 5.0% |
| TGGAATGGAATGGGGTTGGA+TGG | + | chr4_3:39032596-39032615 | None:intergenic | 50.0% | |
| GGAATGGAATGGAATGGGGT+TGG | + | chr4_3:39032600-39032619 | None:intergenic | 50.0% | |
| ATCTCCGGAGCAACGATACA+CGG | + | chr4_3:39032796-39032815 | None:intergenic | 50.0% | |
| CTGTACGTAGCATTAGCACC+TGG | + | chr4_3:39032866-39032885 | None:intergenic | 50.0% | |
| GGAGATGGCAATGCTGAATG+TGG | + | chr4_3:39032899-39032918 | None:intergenic | 50.0% | |
| ATTCAGCATTGCCATCTCCG+CGG | - | chr4_3:39032900-39032919 | Msa0640410:intron | 50.0% | |
| TTGCAGAGAAGTTTCGACGG+TGG | + | chr4_3:39032942-39032961 | None:intergenic | 50.0% | |
| ATCGGGACACGACTAATCTG+AGG | + | chr4_3:39033111-39033130 | None:intergenic | 50.0% | |
| ! | GATTAGTCGTGTCCCGATGT+CGG | - | chr4_3:39033113-39033132 | Msa0640410:CDS | 50.0% |
| CCTTACATGCCATTGGAAGC+TGG | + | chr4_3:39033558-39033577 | None:intergenic | 50.0% | |
| CCAGCTTCCAATGGCATGTA+AGG | - | chr4_3:39033555-39033574 | Msa0640410:intron | 50.0% | |
| ! | CGGAATGTGTGTAGCGTTGA+TGG | - | chr4_3:39033647-39033666 | Msa0640410:intron | 50.0% |
| ! | TTCGGGGGTACATAAGTGAC+CGG | + | chr4_3:39033759-39033778 | None:intergenic | 50.0% |
| !! | ACGGCAATTCCGGTGTTGAT+AGG | - | chr4_3:39034036-39034055 | Msa0640410:intron | 50.0% |
| AGCGATTACCTCACTAGCGA+TGG | + | chr4_3:39034109-39034128 | None:intergenic | 50.0% | |
| GAAAATCCGTCTTGAGGCTG+TGG | - | chr4_3:39034223-39034242 | Msa0640410:intron | 50.0% | |
| GGCACCACTATGCTATAAGC+AGG | + | chr4_3:39034982-39035001 | None:intergenic | 50.0% | |
| !! | TAGCATAGTGGTGCCACTTG+TGG | - | chr4_3:39034987-39035006 | Msa0640410:intron | 50.0% |
| GAATTCACGCATTCACGCAG+AGG | + | chr4_3:39035439-39035458 | None:intergenic | 50.0% | |
| GCGTGAATGCGTGAATTCAC+TGG | - | chr4_3:39035441-39035460 | Msa0640410:CDS | 50.0% | |
| CTTCGACTTACCTTGGACAG+TGG | - | chr4_3:39035752-39035771 | Msa0640410:intron | 50.0% | |
| ! | CTTGGGGCAATCGAGTTGTT+AGG | - | chr4_3:39035925-39035944 | Msa0640410:CDS | 50.0% |
| ACAGCCGTGTATCGTTGCTC+CGG | - | chr4_3:39032789-39032808 | Msa0640410:intron | 55.0% | |
| TTCAGCATTGCCATCTCCGC+GGG | - | chr4_3:39032901-39032920 | Msa0640410:intron | 55.0% | |
| TGACACGACGTGTCCGACAT+CGG | + | chr4_3:39033129-39033148 | None:intergenic | 55.0% | |
| CAACACGGACACCGATAAGC+CGG | + | chr4_3:39033210-39033229 | None:intergenic | 55.0% | |
| ! | ATCGGTGTCCGTGTTGTGTC+TGG | - | chr4_3:39033214-39033233 | Msa0640410:intron | 55.0% |
| AAGAGCAGGGAGTGGAACAG+AGG | - | chr4_3:39033359-39033378 | Msa0640410:intron | 55.0% | |
| CAGGGAGTGGAACAGAGGAA+AGG | - | chr4_3:39033364-39033383 | Msa0640410:intron | 55.0% | |
| GCAATGGACCATCGCTAGTG+AGG | - | chr4_3:39034098-39034117 | Msa0640410:intron | 55.0% | |
| AATCCGTCTTGAGGCTGTGG+CGG | - | chr4_3:39034226-39034245 | Msa0640410:intron | 55.0% | |
| TGGGTAGGCTTGTCTCCCTT+AGG | + | chr4_3:39035539-39035558 | None:intergenic | 55.0% | |
| TGCCTGAGCAGGCAAGCAGT+CGG | + | chr4_3:39032838-39032857 | None:intergenic | 60.0% | |
| GAATCCAACAGCGAAGCCCG+CGG | + | chr4_3:39032920-39032939 | None:intergenic | 60.0% | |
| GACACGACGTGTCCGACATC+GGG | + | chr4_3:39033128-39033147 | None:intergenic | 60.0% | |
| ! | GGGGGTACATAAGTGACCGG+TGG | + | chr4_3:39033756-39033775 | None:intergenic | 60.0% |
| GGCGGTGGGAATTCCACATG+AGG | - | chr4_3:39034244-39034263 | Msa0640410:intron | 60.0% | |
| GTCACTCCTTCGCGCTGCGA+AGG | - | chr4_3:39032759-39032778 | Msa0640410:intron | 65.0% | |
| ACTCCTTCGCGCTGCGAAGG+AGG | - | chr4_3:39032762-39032781 | Msa0640410:intron | 65.0% | |
| AAGCCTCCTTCGCAGCGCGA+AGG | + | chr4_3:39032768-39032787 | None:intergenic | 65.0% | |
| ! | CACCGACTGCTTGCCTGCTC+AGG | - | chr4_3:39032833-39032852 | Msa0640410:intron | 65.0% |
| ACCTGGCTGCTTGCCTGAGC+AGG | + | chr4_3:39032849-39032868 | None:intergenic | 65.0% | |
| AACAGCGAAGCCCGCGGAGA+TGG | + | chr4_3:39032914-39032933 | None:intergenic | 65.0% | |
| ATCTCCGCGGGCTTCGCTGT+TGG | - | chr4_3:39032913-39032932 | Msa0640410:intron | 65.0% | |
| CCACCGCCACAGCCTCAAGA+CGG | + | chr4_3:39034232-39034251 | None:intergenic | 65.0% | |
| CGTCTTGAGGCTGTGGCGGT+GGG | - | chr4_3:39034230-39034249 | Msa0640410:intron | 65.0% | |
| GCCTGCTCAGGCAAGCAGCC+AGG | - | chr4_3:39032845-39032864 | Msa0640410:intron | 70.0% | |
| CCGTCTTGAGGCTGTGGCGG+TGG | - | chr4_3:39034229-39034248 | Msa0640410:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 39032415 | 39036439 | 39032415 | ID=Msa0640410;Name=Msa0640410 |
| chr4_3 | mRNA | 39032415 | 39036439 | 39032415 | ID=Msa0640410-mRNA-1;Parent=Msa0640410;Name=Msa0640410-mRNA-1;_AED=0.19;_eAED=0.19;_QI=319|1|1|1|0.83|0.71|7|157|276 |
| chr4_3 | exon | 39032415 | 39032510 | 39032415 | ID=Msa0640410-mRNA-1:exon:8773;Parent=Msa0640410-mRNA-1 |
| chr4_3 | exon | 39032978 | 39033203 | 39032978 | ID=Msa0640410-mRNA-1:exon:8772;Parent=Msa0640410-mRNA-1 |
| chr4_3 | exon | 39034735 | 39034818 | 39034735 | ID=Msa0640410-mRNA-1:exon:8771;Parent=Msa0640410-mRNA-1 |
| chr4_3 | exon | 39034907 | 39034946 | 39034907 | ID=Msa0640410-mRNA-1:exon:8770;Parent=Msa0640410-mRNA-1 |
| chr4_3 | exon | 39035222 | 39035318 | 39035222 | ID=Msa0640410-mRNA-1:exon:8769;Parent=Msa0640410-mRNA-1 |
| chr4_3 | exon | 39035397 | 39035517 | 39035397 | ID=Msa0640410-mRNA-1:exon:8768;Parent=Msa0640410-mRNA-1 |
| chr4_3 | exon | 39035797 | 39036439 | 39035797 | ID=Msa0640410-mRNA-1:exon:8767;Parent=Msa0640410-mRNA-1 |
| chr4_3 | five_prime_UTR | 39036121 | 39036439 | 39036121 | ID=Msa0640410-mRNA-1:five_prime_utr;Parent=Msa0640410-mRNA-1 |
| chr4_3 | CDS | 39035797 | 39036120 | 39035797 | ID=Msa0640410-mRNA-1:cds;Parent=Msa0640410-mRNA-1 |
| chr4_3 | CDS | 39035397 | 39035517 | 39035397 | ID=Msa0640410-mRNA-1:cds;Parent=Msa0640410-mRNA-1 |
| chr4_3 | CDS | 39035222 | 39035318 | 39035222 | ID=Msa0640410-mRNA-1:cds;Parent=Msa0640410-mRNA-1 |
| chr4_3 | CDS | 39034907 | 39034946 | 39034907 | ID=Msa0640410-mRNA-1:cds;Parent=Msa0640410-mRNA-1 |
| chr4_3 | CDS | 39034735 | 39034818 | 39034735 | ID=Msa0640410-mRNA-1:cds;Parent=Msa0640410-mRNA-1 |
| chr4_3 | CDS | 39033039 | 39033203 | 39033039 | ID=Msa0640410-mRNA-1:cds;Parent=Msa0640410-mRNA-1 |
| chr4_3 | three_prime_UTR | 39032978 | 39033038 | 39032978 | ID=Msa0640410-mRNA-1:three_prime_utr;Parent=Msa0640410-mRNA-1 |
| chr4_3 | three_prime_UTR | 39032415 | 39032510 | 39032415 | ID=Msa0640410-mRNA-1:three_prime_utr;Parent=Msa0640410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
