Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0680640 | XP_003603992.1 | 98.326 | 239 | 1 | 1 | 14 | 252 | 136 | 371 | 2.22e-170 | 484 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0680640 | sp|Q8VWF1|SH3P2_ARATH | 75.314 | 239 | 56 | 1 | 14 | 252 | 133 | 368 | 3.55e-135 | 388 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0680640 | G7J7R7 | 98.326 | 239 | 1 | 1 | 14 | 252 | 136 | 371 | 1.06e-170 | 484 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0680640 | Msa1415340 | 0.931309 | 4.567572e-94 | -8.615850e-47 |
| Msa0475930 | Msa0680640 | 0.894631 | 2.055745e-75 | -8.615850e-47 |
| Msa0523910 | Msa0680640 | 0.900887 | 4.669605e-78 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0680640 | MtrunA17_Chr3g0145091 | 98.326 | 239 | 1 | 1 | 14 | 252 | 136 | 371 | 2.04e-174 | 484 |
| Msa0680640 | MtrunA17_Chr4g0035851 | 88.333 | 240 | 24 | 2 | 14 | 252 | 136 | 372 | 9.88e-145 | 409 |
| Msa0680640 | MtrunA17_Chr8g0380121 | 54.583 | 240 | 83 | 7 | 14 | 252 | 134 | 348 | 1.57e-75 | 233 |
| Msa0680640 | MtrunA17_Chr5g0408971 | 47.737 | 243 | 111 | 4 | 14 | 250 | 134 | 366 | 9.82e-70 | 218 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0680640 | AT4G34660.2 | 75.314 | 239 | 56 | 1 | 14 | 252 | 110 | 345 | 1.76e-136 | 388 |
| Msa0680640 | AT4G34660.1 | 75.314 | 239 | 56 | 1 | 14 | 252 | 133 | 368 | 3.61e-136 | 388 |
| Msa0680640 | AT4G34660.3 | 58.130 | 246 | 48 | 4 | 8 | 252 | 126 | 317 | 3.42e-91 | 272 |
| Msa0680640 | AT4G18060.1 | 55.417 | 240 | 81 | 6 | 14 | 252 | 137 | 351 | 3.06e-83 | 253 |
| Msa0680640 | AT1G31440.1 | 36.721 | 305 | 122 | 6 | 14 | 250 | 132 | 433 | 4.65e-56 | 186 |
| Msa0680640 | AT4G39020.1 | 68.235 | 85 | 27 | 0 | 168 | 252 | 85 | 169 | 1.10e-38 | 133 |
Find 98 sgRNAs with CRISPR-Local
Find 251 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAAATTGATTTGTGATTT+AGG | 0.163304 | 4_4:-39757020 | Msa0680640:three_prime_UTR |
| CCTCAAGATGATCAAGTATT+TGG | 0.207462 | 4_4:+39757882 | None:intergenic |
| CTTTCGCACCTTGTGTTCTT+AGG | 0.209218 | 4_4:-39756906 | Msa0680640:three_prime_UTR |
| TAATGGCATAACTGACAGTA+TGG | 0.305114 | 4_4:-39757649 | Msa0680640:CDS |
| ACCCATCACCATTGCTCTTA+AGG | 0.311073 | 4_4:+39758463 | None:intergenic |
| GAAGTCAAACATGGCCATAT+TGG | 0.316099 | 4_4:-39758131 | Msa0680640:CDS |
| TGCTGAAAATATTATGAAAC+TGG | 0.318785 | 4_4:-39758182 | Msa0680640:CDS |
| GACAGTATGGGTTACTTCTT+AGG | 0.321074 | 4_4:-39757636 | Msa0680640:CDS |
| CTTCTGTCACTAACCGTTCC+AGG | 0.327519 | 4_4:+39759824 | None:intergenic |
| AAGTCAAACATGGCCATATT+GGG | 0.328488 | 4_4:-39758130 | Msa0680640:CDS |
| CCATGTTTGACTTCAGGTCT+TGG | 0.331661 | 4_4:+39758140 | None:intergenic |
| TTGTGAATGTGTTCGTGTTT+TGG | 0.333490 | 4_4:-39757080 | Msa0680640:three_prime_UTR |
| TTACTGGAGGAATATATTCT+TGG | 0.341447 | 4_4:+39756858 | None:intergenic |
| ATATGGCCATGTTTGACTTC+AGG | 0.342498 | 4_4:+39758134 | None:intergenic |
| AATGGTGATGGGTGCTCCTT+TGG | 0.360393 | 4_4:-39758453 | Msa0680640:CDS |
| AGCTGCTTCCTTCCCCAATA+TGG | 0.361155 | 4_4:+39758117 | None:intergenic |
| ATATTCCTCCAGTAATTATA+TGG | 0.361319 | 4_4:-39756850 | Msa0680640:three_prime_UTR |
| CAATAGCACCATATAATTAC+TGG | 0.364454 | 4_4:+39756842 | None:intergenic |
| CCCATCACCATTGCTCTTAA+GGG | 0.378074 | 4_4:+39758464 | None:intergenic |
| AACTTCAGACTCAGCATGAT+AGG | 0.393217 | 4_4:+39757504 | None:intergenic |
| ATAATTGACAAAATTAGCTT+TGG | 0.394974 | 4_4:-39756797 | Msa0680640:three_prime_UTR |
| TTGGAGCACTCTTTGATGAT+AGG | 0.401284 | 4_4:+39757901 | None:intergenic |
| TAACTCTTCCATTGCATTGG+AGG | 0.406254 | 4_4:-39756944 | Msa0680640:three_prime_UTR |
| TTGAACTGAATTTATCAGTT+GGG | 0.407755 | 4_4:-39757483 | Msa0680640:CDS |
| CCCTATGGCAAGAAACCAAC+TGG | 0.418105 | 4_4:+39757104 | None:intergenic |
| ACACCATTCACTTCTTCATA+TGG | 0.418813 | 4_4:+39757690 | None:intergenic |
| CCACCTTGCTTGCAAGGACC+TGG | 0.436876 | 4_4:+39757146 | None:intergenic |
| AAAGCAGGTTGGTTTCCATT+TGG | 0.437998 | 4_4:-39757187 | Msa0680640:CDS |
| TCTTCATATGGTGGAGGTGG+TGG | 0.441768 | 4_4:+39757702 | None:intergenic |
| CCAGTTGGTTTCTTGCCATA+GGG | 0.447327 | 4_4:-39757104 | Msa0680640:three_prime_UTR |
| CATTTGGTTATGTTGAAAGA+AGG | 0.450802 | 4_4:-39757171 | Msa0680640:CDS |
| TCATAACTCTTCCATTGCAT+TGG | 0.457106 | 4_4:-39756947 | Msa0680640:three_prime_UTR |
| GAATGGTGTCTATGCTTCTC+AGG | 0.460161 | 4_4:-39757676 | Msa0680640:CDS |
| CTAAACGCCAGGCAAAAGTA+AGG | 0.465429 | 4_4:-39758219 | Msa0680640:CDS |
| TATGCTTCTCAGGAACATAA+TGG | 0.468519 | 4_4:-39757666 | Msa0680640:CDS |
| GACAGGTGTCAAACAATGGA+TGG | 0.474962 | 4_4:-39757231 | Msa0680640:intron |
| CTTCCGCCACCTTGCTTGCA+AGG | 0.475894 | 4_4:+39757140 | None:intergenic |
| TCCAGTTGGTTTCTTGCCAT+AGG | 0.483850 | 4_4:-39757105 | Msa0680640:three_prime_UTR |
| CAAATACTTGATCATCTTGA+GGG | 0.487070 | 4_4:-39757881 | Msa0680640:CDS |
| CTTCTTTCAACATAACCAAA+TGG | 0.487119 | 4_4:+39757172 | None:intergenic |
| GGTGATGGGTGCTCCTTTGG+AGG | 0.492968 | 4_4:-39758450 | Msa0680640:CDS |
| ACTTCTTCATATGGTGGAGG+TGG | 0.493280 | 4_4:+39757699 | None:intergenic |
| GGGCTGAGGGTGAATGCAAA+GGG | 0.500360 | 4_4:-39757210 | Msa0680640:CDS |
| GGAAGCAGCTGCAGCAATGA+CGG | 0.500902 | 4_4:-39758104 | Msa0680640:CDS |
| GTGCTCCTTTGGAGGATGCT+AGG | 0.510304 | 4_4:-39758442 | Msa0680640:CDS |
| TATTGAAGTTTCTAAACGCC+AGG | 0.513265 | 4_4:-39758230 | Msa0680640:CDS |
| GTTGAACTGAATTTATCAGT+TGG | 0.517089 | 4_4:-39757484 | Msa0680640:CDS |
| ATTTGGTTATGTTGAAAGAA+GGG | 0.517567 | 4_4:-39757170 | Msa0680640:CDS |
| TATCTACACTAGGTGTAGGT+GGG | 0.518680 | 4_4:+39757733 | None:intergenic |
| CCCTTAAGAGCAATGGTGAT+GGG | 0.520874 | 4_4:-39758464 | Msa0680640:CDS |
| TTATCTACACTAGGTGTAGG+TGG | 0.524126 | 4_4:+39757732 | None:intergenic |
| CTGTTATCTACACTAGGTGT+AGG | 0.524825 | 4_4:+39757729 | None:intergenic |
| TGAACTGAATTTATCAGTTG+GGG | 0.532330 | 4_4:-39757482 | Msa0680640:CDS |
| GGTCCTTGCAAGCAAGGTGG+CGG | 0.537462 | 4_4:-39757143 | Msa0680640:CDS |
| ACTTGATCATCTTGAGGGAG+AGG | 0.539980 | 4_4:-39757876 | Msa0680640:CDS |
| ATCAGAACGGCAGCGTATTG+AGG | 0.541345 | 4_4:-39757757 | Msa0680640:CDS |
| GGTGAATGCAAAGGGAAAGC+AGG | 0.542608 | 4_4:-39757202 | Msa0680640:CDS |
| AGCTGCAGCAATGACGGCTG+TGG | 0.542761 | 4_4:-39758098 | Msa0680640:CDS |
| TGATGGAATTCAAAGCATTG+AGG | 0.543213 | 4_4:-39759856 | Msa0680640:CDS |
| CCAAATACTTGATCATCTTG+AGG | 0.543542 | 4_4:-39757882 | Msa0680640:CDS |
| GCATTGAGGTTATCAAAGCC+TGG | 0.545460 | 4_4:-39759842 | Msa0680640:CDS |
| TTCACTTCTTCATATGGTGG+AGG | 0.545910 | 4_4:+39757696 | None:intergenic |
| GCCCTTAAGAGCAATGGTGA+TGG | 0.546031 | 4_4:-39758465 | Msa0680640:CDS |
| GGACCAGGTCCTTGCAAGCA+AGG | 0.553869 | 4_4:-39757149 | Msa0680640:CDS |
| GTCAAACAATGGATGGGCTG+AGG | 0.554397 | 4_4:-39757224 | Msa0680640:CDS |
| TGGGCTGAGGGTGAATGCAA+AGG | 0.554437 | 4_4:-39757211 | Msa0680640:CDS |
| GGATTATATTGTCATTCGAA+AGG | 0.558804 | 4_4:-39757461 | Msa0680640:intron |
| GCGACAGGATGCTGAAGCCC+AGG | 0.562762 | 4_4:-39758393 | Msa0680640:intron |
| ACTCCAGCGTCTTATAGCTA+TGG | 0.563682 | 4_4:-39758053 | Msa0680640:intron |
| ACTTCAGACTCAGCATGATA+GGG | 0.565386 | 4_4:+39757505 | None:intergenic |
| CTGTGGAAGCACAGCAGCAG+AGG | 0.569999 | 4_4:-39758081 | Msa0680640:CDS |
| ACGTTATGACAGAATGCGAC+AGG | 0.570308 | 4_4:-39758408 | Msa0680640:CDS |
| TGCAGAGCCCTTAAGAGCAA+TGG | 0.574125 | 4_4:-39758471 | Msa0680640:CDS |
| ATCTACACTAGGTGTAGGTG+GGG | 0.575722 | 4_4:+39757734 | None:intergenic |
| TCAAACAATGGATGGGCTGA+GGG | 0.578585 | 4_4:-39757223 | Msa0680640:CDS |
| TATGAACACCTCCAATGCAA+TGG | 0.578677 | 4_4:+39756936 | None:intergenic |
| GAACACATTCACAATCCCTA+TGG | 0.586341 | 4_4:+39757089 | None:intergenic |
| CCACCATATGAAGAAGTGAA+TGG | 0.586782 | 4_4:-39757693 | Msa0680640:CDS |
| CCATTCACTTCTTCATATGG+TGG | 0.591442 | 4_4:+39757693 | None:intergenic |
| TTATGTTGAAAGAAGGGACC+AGG | 0.597893 | 4_4:-39757164 | Msa0680640:CDS |
| GAGGTTATCAAAGCCTGGAA+CGG | 0.598790 | 4_4:-39759837 | Msa0680640:intron |
| CTTAATAACCTAAGAACACA+AGG | 0.598861 | 4_4:+39756898 | None:intergenic |
| AAACATGGCCATATTGGGGA+AGG | 0.604010 | 4_4:-39758125 | Msa0680640:CDS |
| AATGCAAAGGGAAAGCAGGT+TGG | 0.608458 | 4_4:-39757198 | Msa0680640:CDS |
| TCTATCGATCGATAATCGCA+TGG | 0.614516 | 4_4:+39756985 | None:intergenic |
| TATGGGTTACTTCTTAGGAG+AGG | 0.616229 | 4_4:-39757631 | Msa0680640:intron |
| CCAAGACCTGAAGTCAAACA+TGG | 0.625705 | 4_4:-39758140 | Msa0680640:CDS |
| TAAACGCCAGGCAAAAGTAA+GGG | 0.626804 | 4_4:-39758218 | Msa0680640:CDS |
| AGTCAAACATGGCCATATTG+GGG | 0.637825 | 4_4:-39758129 | Msa0680640:CDS |
| ATACCATAGCTATAAGACGC+TGG | 0.640354 | 4_4:+39758050 | None:intergenic |
| AATGGCATAACTGACAGTAT+GGG | 0.640455 | 4_4:-39757648 | Msa0680640:CDS |
| AGATGCCTAGCATCCTCCAA+AGG | 0.642878 | 4_4:+39758437 | None:intergenic |
| GGCATGCTGTTATCTACACT+AGG | 0.651577 | 4_4:+39757723 | None:intergenic |
| ACAGGTGTCAAACAATGGAT+GGG | 0.661310 | 4_4:-39757230 | Msa0680640:intron |
| AATGATAGATGATATCAGAA+CGG | 0.667024 | 4_4:-39757770 | Msa0680640:intron |
| CCAGGTCCTTGCAAGCAAGG+TGG | 0.677427 | 4_4:-39757146 | Msa0680640:CDS |
| GCAAAAGTAAGGGAAACACC+AGG | 0.682366 | 4_4:-39758208 | Msa0680640:CDS |
| TAGCACCATATAATTACTGG+AGG | 0.687741 | 4_4:+39756845 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTATTTTTTGAAAACT+TGG | - | chr4_4:39757141-39757160 | Msa0680640:CDS | 10.0% |
| !! | AAAAGAAAAAATAAAAAAAC+TGG | + | chr4_4:39758301-39758320 | None:intergenic | 10.0% |
| !!! | GTTTTTTTATTTTTTCTTTT+TGG | - | chr4_4:39758301-39758320 | Msa0680640:intron | 10.0% |
| !! | TTGAAATTGGTAAAAAATAT+TGG | + | chr4_4:39757661-39757680 | None:intergenic | 15.0% |
| !! | ATCAAAAAGAAAACAATATT+GGG | + | chr4_4:39757693-39757712 | None:intergenic | 15.0% |
| !! | TATCAAAAAGAAAACAATAT+TGG | + | chr4_4:39757694-39757713 | None:intergenic | 15.0% |
| !!! | TTTCTATTTTAAAATGATCT+GGG | - | chr4_4:39757727-39757746 | Msa0680640:CDS | 15.0% |
| !!! | TTGTTCGTAATTTATTTTTT+CGG | - | chr4_4:39759350-39759369 | Msa0680640:intron | 15.0% |
| !! | TATAATAGTTAATTACACAG+AGG | - | chr4_4:39756944-39756963 | Msa0680640:three_prime_UTR | 20.0% |
| !! | GAATTAAATCAATAATGCAA+TGG | + | chr4_4:39757002-39757021 | None:intergenic | 20.0% |
| !!! | TTATTTTCAAACTTGTCTTT+TGG | - | chr4_4:39757368-39757387 | Msa0680640:intron | 20.0% |
| !!! | TTTATTGGTGTATATCTTTT+GGG | - | chr4_4:39757401-39757420 | Msa0680640:intron | 20.0% |
| !! | TATATTTGTTTAAAAACCTC+AGG | - | chr4_4:39757431-39757450 | Msa0680640:intron | 20.0% |
| !!! | CTGATTTTAAAAACAAAAAC+CGG | - | chr4_4:39757454-39757473 | Msa0680640:intron | 20.0% |
| !! | TTGATTTATGAAAAACAAAC+CGG | - | chr4_4:39757484-39757503 | Msa0680640:CDS | 20.0% |
| !!! | GAATTACAAAAACCATTTTT+AGG | - | chr4_4:39757626-39757645 | Msa0680640:intron | 20.0% |
| !!! | TTTTTTACCAATTTCAAATG+TGG | - | chr4_4:39757664-39757683 | Msa0680640:CDS | 20.0% |
| !!! | TTTTTACCAATTTCAAATGT+GGG | - | chr4_4:39757665-39757684 | Msa0680640:CDS | 20.0% |
| !!! | TATTGTTTTCTTTTTGATAC+AGG | - | chr4_4:39757695-39757714 | Msa0680640:CDS | 20.0% |
| !!! | GTTTCTATTTTAAAATGATC+TGG | - | chr4_4:39757726-39757745 | Msa0680640:CDS | 20.0% |
| !! | ATACATGTAAATGTAATTCT+TGG | - | chr4_4:39757855-39757874 | Msa0680640:intron | 20.0% |
| !! | AAATTGAAACAATTCAACAA+GGG | + | chr4_4:39757956-39757975 | None:intergenic | 20.0% |
| !! | AAAATTGAAACAATTCAACA+AGG | + | chr4_4:39757957-39757976 | None:intergenic | 20.0% |
| !! | TACTCAGTTAGATTTAATAT+TGG | + | chr4_4:39758022-39758041 | None:intergenic | 20.0% |
| !! | TTATTTGAACATTGAAGTAT+TGG | - | chr4_4:39758134-39758153 | Msa0680640:CDS | 20.0% |
| !!! | ATAGATTGCTATTTTTAAGT+GGG | + | chr4_4:39758690-39758709 | None:intergenic | 20.0% |
| !!! | AATAGATTGCTATTTTTAAG+TGG | + | chr4_4:39758691-39758710 | None:intergenic | 20.0% |
| !! | CTTGATATCAAAAGATAATT+CGG | + | chr4_4:39758825-39758844 | None:intergenic | 20.0% |
| !! | ATTTGTAACCTTAAAAGAAA+TGG | + | chr4_4:39759041-39759060 | None:intergenic | 20.0% |
| !! | CAAGTAAAAAATAGAAAAGA+GGG | + | chr4_4:39759295-39759314 | None:intergenic | 20.0% |
| !!! | TGTTCGTAATTTATTTTTTC+GGG | - | chr4_4:39759351-39759370 | Msa0680640:intron | 20.0% |
| !! | AAATCACAATCATATTTGTT+AGG | + | chr4_4:39759389-39759408 | None:intergenic | 20.0% |
| !!! | AGAAAATTGATTTGTGATTT+AGG | - | chr4_4:39759621-39759640 | Msa0680640:intron | 20.0% |
| !!! | ATAATTGACAAAATTAGCTT+TGG | - | chr4_4:39759844-39759863 | Msa0680640:CDS | 20.0% |
| ! | GTTAACACTAAAATTACACA+TGG | - | chr4_4:39756857-39756876 | Msa0680640:three_prime_UTR | 25.0% |
| ! | ATCAATAATGCAATGGTTAT+TGG | + | chr4_4:39756995-39757014 | None:intergenic | 25.0% |
| !!! | TTTGGTCTTTTGTTGTTTAT+TGG | - | chr4_4:39757386-39757405 | Msa0680640:intron | 25.0% |
| !! | GTTTATTGGTGTATATCTTT+TGG | - | chr4_4:39757400-39757419 | Msa0680640:intron | 25.0% |
| ! | TTCATAAATCAATTCAGAAC+CGG | + | chr4_4:39757476-39757495 | None:intergenic | 25.0% |
| !!! | ACAAAAACCATTTTTAGGTT+TGG | - | chr4_4:39757631-39757650 | Msa0680640:intron | 25.0% |
| !!! | CAAAAACCATTTTTAGGTTT+GGG | - | chr4_4:39757632-39757651 | Msa0680640:CDS | 25.0% |
| !! | TTTTCTTTTTGATACAGGTA+AGG | - | chr4_4:39757700-39757719 | Msa0680640:CDS | 25.0% |
| ! | AATTGAAACAATTCAACAAG+GGG | + | chr4_4:39757955-39757974 | None:intergenic | 25.0% |
| ! | GTTAGATTTAATATTGGACT+TGG | + | chr4_4:39758016-39758035 | None:intergenic | 25.0% |
| ! | AAATGAAAATCAAGATACCT+GGG | + | chr4_4:39758268-39758287 | None:intergenic | 25.0% |
| ! | AAAATGAAAATCAAGATACC+TGG | + | chr4_4:39758269-39758288 | None:intergenic | 25.0% |
| ! | TGCTGAAAATATTATGAAAC+TGG | - | chr4_4:39758459-39758478 | Msa0680640:CDS | 25.0% |
| !!! | CAATCTATTTCTGATTATGA+AGG | - | chr4_4:39758702-39758721 | Msa0680640:intron | 25.0% |
| ! | AATGATAGATGATATCAGAA+CGG | - | chr4_4:39758871-39758890 | Msa0680640:intron | 25.0% |
| ! | AGAAAGTAAAGTAAGCTAAA+CGG | + | chr4_4:39759085-39759104 | None:intergenic | 25.0% |
| ! | TTGAACTGAATTTATCAGTT+GGG | - | chr4_4:39759158-39759177 | Msa0680640:intron | 25.0% |
| ! | GCAAGTAAAAAATAGAAAAG+AGG | + | chr4_4:39759296-39759315 | None:intergenic | 25.0% |
| !!! | AATATGATTGTGATTTTGAC+AGG | - | chr4_4:39759393-39759412 | Msa0680640:intron | 25.0% |
| ! | ATTTGGTTATGTTGAAAGAA+GGG | - | chr4_4:39759471-39759490 | Msa0680640:intron | 25.0% |
| ! | ATATTCCTCCAGTAATTATA+TGG | - | chr4_4:39759791-39759810 | Msa0680640:intron | 25.0% |
| AAAATTCAAAGTCTGTTCTC+TGG | - | chr4_4:39757107-39757126 | Msa0680640:three_prime_UTR | 30.0% | |
| !!! | TTGTTTTTAAAATCAGCCTG+AGG | + | chr4_4:39757450-39757469 | None:intergenic | 30.0% |
| TTCAAAAAAGCAATCTGGTT+TGG | - | chr4_4:39757508-39757527 | Msa0680640:CDS | 30.0% | |
| TGAAATCACACAATTACAAG+TGG | + | chr4_4:39757817-39757836 | None:intergenic | 30.0% | |
| ACTTGTAATTGTGTGATTTC+AGG | - | chr4_4:39757816-39757835 | Msa0680640:intron | 30.0% | |
| CTTGTAATTGTGTGATTTCA+GGG | - | chr4_4:39757817-39757836 | Msa0680640:intron | 30.0% | |
| AAACATAACTCACGTAAATC+TGG | + | chr4_4:39757924-39757943 | None:intergenic | 30.0% | |
| AGATTTACGTGAGTTATGTT+TGG | - | chr4_4:39757923-39757942 | Msa0680640:intron | 30.0% | |
| ATTGAAACAATTCAACAAGG+GGG | + | chr4_4:39757954-39757973 | None:intergenic | 30.0% | |
| ATCCATATACATTCATGAGT+TGG | - | chr4_4:39758052-39758071 | Msa0680640:intron | 30.0% | |
| !! | TGAAGTATTGGCTGATATTT+AGG | - | chr4_4:39758146-39758165 | Msa0680640:CDS | 30.0% |
| ! | ATAATATTTTCAGCATTGCC+TGG | + | chr4_4:39758454-39758473 | None:intergenic | 30.0% |
| CAAATACTTGATCATCTTGA+GGG | - | chr4_4:39758760-39758779 | Msa0680640:intron | 30.0% | |
| ! | AGGTTAGACCATTTCTTTTA+AGG | - | chr4_4:39759030-39759049 | Msa0680640:intron | 30.0% |
| ! | GTTTAGCTTACTTTACTTTC+TGG | - | chr4_4:39759084-39759103 | Msa0680640:intron | 30.0% |
| GTTGAACTGAATTTATCAGT+TGG | - | chr4_4:39759157-39759176 | Msa0680640:intron | 30.0% | |
| TGAACTGAATTTATCAGTTG+GGG | - | chr4_4:39759159-39759178 | Msa0680640:intron | 30.0% | |
| GGATTATATTGTCATTCGAA+AGG | - | chr4_4:39759180-39759199 | Msa0680640:intron | 30.0% | |
| AAAAATAGAAAAGAGGGAGA+GGG | + | chr4_4:39759289-39759308 | None:intergenic | 30.0% | |
| AAAAAATAGAAAAGAGGGAG+AGG | + | chr4_4:39759290-39759309 | None:intergenic | 30.0% | |
| CTTCTTTCAACATAACCAAA+TGG | + | chr4_4:39759472-39759491 | None:intergenic | 30.0% | |
| CATTTGGTTATGTTGAAAGA+AGG | - | chr4_4:39759470-39759489 | Msa0680640:intron | 30.0% | |
| CTTAATAACCTAAGAACACA+AGG | + | chr4_4:39759746-39759765 | None:intergenic | 30.0% | |
| TTACTGGAGGAATATATTCT+TGG | + | chr4_4:39759786-39759805 | None:intergenic | 30.0% | |
| CAATAGCACCATATAATTAC+TGG | + | chr4_4:39759802-39759821 | None:intergenic | 30.0% | |
| ACACTAAAATTACACATGGC+CGG | - | chr4_4:39756861-39756880 | Msa0680640:three_prime_UTR | 35.0% | |
| !!! | TATCTGCAGATTGTTTTTGC+CGG | + | chr4_4:39756883-39756902 | None:intergenic | 35.0% |
| TGTATAGGCTGAAGATTATG+AGG | + | chr4_4:39756917-39756936 | None:intergenic | 35.0% | |
| TCATAATCTTCAGCCTATAC+AGG | - | chr4_4:39756916-39756935 | Msa0680640:three_prime_UTR | 35.0% | |
| CTATTATACTGCACCTGTAT+AGG | + | chr4_4:39756932-39756951 | None:intergenic | 35.0% | |
| ACACATCCAAAACATTCTAG+TGG | - | chr4_4:39757052-39757071 | Msa0680640:three_prime_UTR | 35.0% | |
| AATAAACATGAACCCCCATT+TGG | + | chr4_4:39757353-39757372 | None:intergenic | 35.0% | |
| !!! | CCAGATTGCTTTTTTGAAAC+CGG | + | chr4_4:39757506-39757525 | None:intergenic | 35.0% |
| ! | CTTTTTGATACAGGTAAGGT+TGG | - | chr4_4:39757704-39757723 | Msa0680640:CDS | 35.0% |
| ATGGCTCATGTATAGAACTA+AGG | + | chr4_4:39757784-39757803 | None:intergenic | 35.0% | |
| ! | TAGTTCTATACATGAGCCAT+CGG | - | chr4_4:39757784-39757803 | Msa0680640:intron | 35.0% |
| TAGTTATGTACATCCAACTC+AGG | + | chr4_4:39757888-39757907 | None:intergenic | 35.0% | |
| GTCAATATTTACTCACAGTC+AGG | + | chr4_4:39757986-39758005 | None:intergenic | 35.0% | |
| TGTGAGTAAATATTGACGCT+AGG | - | chr4_4:39757989-39758008 | Msa0680640:intron | 35.0% | |
| GACCAACTCATGAATGTATA+TGG | + | chr4_4:39758057-39758076 | None:intergenic | 35.0% | |
| !! | TCTGTCTTTGAAACCTATAC+AGG | - | chr4_4:39758387-39758406 | Msa0680640:intron | 35.0% |
| GAAACTTCAATAGCCTGTAT+AGG | + | chr4_4:39758403-39758422 | None:intergenic | 35.0% | |
| TATTGAAGTTTCTAAACGCC+AGG | - | chr4_4:39758411-39758430 | Msa0680640:CDS | 35.0% | |
| AAGTCAAACATGGCCATATT+GGG | - | chr4_4:39758511-39758530 | Msa0680640:intron | 35.0% | |
| GGTATTACAGTTTCACCATA+TGG | - | chr4_4:39758609-39758628 | Msa0680640:intron | 35.0% | |
| !!! | GATTGCTATTTTTAAGTGGG+AGG | + | chr4_4:39758687-39758706 | None:intergenic | 35.0% |
| CCTCAAGATGATCAAGTATT+TGG | + | chr4_4:39758762-39758781 | None:intergenic | 35.0% | |
| CCAAATACTTGATCATCTTG+AGG | - | chr4_4:39758759-39758778 | Msa0680640:intron | 35.0% | |
| ACACCATTCACTTCTTCATA+TGG | + | chr4_4:39758954-39758973 | None:intergenic | 35.0% | |
| TATGCTTCTCAGGAACATAA+TGG | - | chr4_4:39758975-39758994 | Msa0680640:intron | 35.0% | |
| TAATGGCATAACTGACAGTA+TGG | - | chr4_4:39758992-39759011 | Msa0680640:intron | 35.0% | |
| AATGGCATAACTGACAGTAT+GGG | - | chr4_4:39758993-39759012 | Msa0680640:intron | 35.0% | |
| GAAAGGTTTGCGATGATTTA+CGG | - | chr4_4:39759197-39759216 | Msa0680640:intron | 35.0% | |
| ! | TTTTGACAGGTGTCAAACAA+TGG | - | chr4_4:39759406-39759425 | Msa0680640:intron | 35.0% |
| !!! | AGTGTTTTGAAGTTTCCAGT+TGG | - | chr4_4:39759522-39759541 | Msa0680640:intron | 35.0% |
| ! | TTGTGAATGTGTTCGTGTTT+TGG | - | chr4_4:39759561-39759580 | Msa0680640:intron | 35.0% |
| TCATAACTCTTCCATTGCAT+TGG | - | chr4_4:39759694-39759713 | Msa0680640:intron | 35.0% | |
| TAGCACCATATAATTACTGG+AGG | + | chr4_4:39759799-39759818 | None:intergenic | 35.0% | |
| AAACAATCTGCAGATAGCCT+TGG | - | chr4_4:39756887-39756906 | Msa0680640:three_prime_UTR | 40.0% | |
| AACAATCTGCAGATAGCCTT+GGG | - | chr4_4:39756888-39756907 | Msa0680640:three_prime_UTR | 40.0% | |
| GAAGATTATGAGGTTTCCCA+AGG | + | chr4_4:39756907-39756926 | None:intergenic | 40.0% | |
| ! | TCAGCACCACTAGAATGTTT+TGG | + | chr4_4:39757061-39757080 | None:intergenic | 40.0% |
| !! | TGCTGAGAAGATTGGTTTCA+AGG | - | chr4_4:39757075-39757094 | Msa0680640:three_prime_UTR | 40.0% |
| AAAACTTGGTATCCAGTCCA+AGG | - | chr4_4:39757155-39757174 | Msa0680640:CDS | 40.0% | |
| GAGCAAGCTCTGTCTTTAAA+TGG | + | chr4_4:39757231-39757250 | None:intergenic | 40.0% | |
| CCGGTTTCAAAAAAGCAATC+TGG | - | chr4_4:39757503-39757522 | Msa0680640:CDS | 40.0% | |
| AGGCAATCACAAAAATCCCA+CGG | + | chr4_4:39757591-39757610 | None:intergenic | 40.0% | |
| ! | GATTTTTGTGATTGCCTGAG+AGG | - | chr4_4:39757594-39757613 | Msa0680640:intron | 40.0% |
| AATTCTTGTCTGAACCTCTC+AGG | + | chr4_4:39757611-39757630 | None:intergenic | 40.0% | |
| TGGCTACCCAAACCTAAAAA+TGG | + | chr4_4:39757641-39757660 | None:intergenic | 40.0% | |
| ! | TGGGTACCCACATTTGAAAT+TGG | + | chr4_4:39757674-39757693 | None:intergenic | 40.0% |
| GGGATTTGACTATACTGCAT+TGG | - | chr4_4:39757747-39757766 | Msa0680640:CDS | 40.0% | |
| TCTTGGATTTCTTCCTGAGT+TGG | - | chr4_4:39757872-39757891 | Msa0680640:CDS | 40.0% | |
| TAAACGCCAGGCAAAAGTAA+GGG | - | chr4_4:39758423-39758442 | Msa0680640:CDS | 40.0% | |
| ! | ATATGGCCATGTTTGACTTC+AGG | + | chr4_4:39758510-39758529 | None:intergenic | 40.0% |
| GAAGTCAAACATGGCCATAT+TGG | - | chr4_4:39758510-39758529 | Msa0680640:intron | 40.0% | |
| AGTCAAACATGGCCATATTG+GGG | - | chr4_4:39758512-39758531 | Msa0680640:intron | 40.0% | |
| ATACCATAGCTATAAGACGC+TGG | + | chr4_4:39758594-39758613 | None:intergenic | 40.0% | |
| CTAAATACTGCAGCACCATA+TGG | + | chr4_4:39758627-39758646 | None:intergenic | 40.0% | |
| ! | TTGGAGCACTCTTTGATGAT+AGG | + | chr4_4:39758743-39758762 | None:intergenic | 40.0% |
| TATCTACACTAGGTGTAGGT+GGG | + | chr4_4:39758911-39758930 | None:intergenic | 40.0% | |
| TTATCTACACTAGGTGTAGG+TGG | + | chr4_4:39758912-39758931 | None:intergenic | 40.0% | |
| CTGTTATCTACACTAGGTGT+AGG | + | chr4_4:39758915-39758934 | None:intergenic | 40.0% | |
| TTCACTTCTTCATATGGTGG+AGG | + | chr4_4:39758948-39758967 | None:intergenic | 40.0% | |
| CCATTCACTTCTTCATATGG+TGG | + | chr4_4:39758951-39758970 | None:intergenic | 40.0% | |
| CCACCATATGAAGAAGTGAA+TGG | - | chr4_4:39758948-39758967 | Msa0680640:intron | 40.0% | |
| ! | GACAGTATGGGTTACTTCTT+AGG | - | chr4_4:39759005-39759024 | Msa0680640:intron | 40.0% |
| ! | TATGGGTTACTTCTTAGGAG+AGG | - | chr4_4:39759010-39759029 | Msa0680640:intron | 40.0% |
| ACTTCAGACTCAGCATGATA+GGG | + | chr4_4:39759139-39759158 | None:intergenic | 40.0% | |
| AACTTCAGACTCAGCATGAT+AGG | + | chr4_4:39759140-39759159 | None:intergenic | 40.0% | |
| ACAGGTGTCAAACAATGGAT+GGG | - | chr4_4:39759411-39759430 | Msa0680640:intron | 40.0% | |
| !! | AAAGCAGGTTGGTTTCCATT+TGG | - | chr4_4:39759454-39759473 | Msa0680640:intron | 40.0% |
| TTATGTTGAAAGAAGGGACC+AGG | - | chr4_4:39759477-39759496 | Msa0680640:intron | 40.0% | |
| GAACACATTCACAATCCCTA+TGG | + | chr4_4:39759555-39759574 | None:intergenic | 40.0% | |
| TCTATCGATCGATAATCGCA+TGG | + | chr4_4:39759659-39759678 | None:intergenic | 40.0% | |
| TAACTCTTCCATTGCATTGG+AGG | - | chr4_4:39759697-39759716 | Msa0680640:intron | 40.0% | |
| TATGAACACCTCCAATGCAA+TGG | + | chr4_4:39759708-39759727 | None:intergenic | 40.0% | |
| GCATTGAGGTTATCAAAGCC+TGG | - | chr4_4:39756799-39756818 | Msa0680640:three_prime_UTR | 45.0% | |
| GAGGTTATCAAAGCCTGGAA+CGG | - | chr4_4:39756804-39756823 | Msa0680640:three_prime_UTR | 45.0% | |
| ! | TCTAGTGGTGCTGAGAAGAT+TGG | - | chr4_4:39757067-39757086 | Msa0680640:three_prime_UTR | 45.0% |
| !! | ATTGGTCCCCTTGGATTAGT+CGG | + | chr4_4:39757182-39757201 | None:intergenic | 45.0% |
| ! | AAGACAGAGCTTGCTCTGTA+TGG | - | chr4_4:39757235-39757254 | Msa0680640:intron | 45.0% |
| !! | ATGGACTAGCCCACCTAAAT+TGG | - | chr4_4:39757254-39757273 | Msa0680640:intron | 45.0% |
| ! | ATTCCCTCTGGTGCCAATTT+AGG | + | chr4_4:39757270-39757289 | None:intergenic | 45.0% |
| TAGTTAACCACACCATGCAG+CGG | - | chr4_4:39757565-39757584 | Msa0680640:intron | 45.0% | |
| ATGCCAACATATCCTGTGCA+TGG | - | chr4_4:39758098-39758117 | Msa0680640:CDS | 45.0% | |
| CAACCATGCACAGGATATGT+TGG | + | chr4_4:39758104-39758123 | None:intergenic | 45.0% | |
| CCCATCACCATTGCTCTTAA+GGG | + | chr4_4:39758180-39758199 | None:intergenic | 45.0% | |
| CCCTTAAGAGCAATGGTGAT+GGG | - | chr4_4:39758177-39758196 | Msa0680640:CDS | 45.0% | |
| ACCCATCACCATTGCTCTTA+AGG | + | chr4_4:39758181-39758200 | None:intergenic | 45.0% | |
| ACGTTATGACAGAATGCGAC+AGG | - | chr4_4:39758233-39758252 | Msa0680640:CDS | 45.0% | |
| CTAAACGCCAGGCAAAAGTA+AGG | - | chr4_4:39758422-39758441 | Msa0680640:CDS | 45.0% | |
| !! | GTGTTTCCCTTACTTTTGCC+TGG | + | chr4_4:39758432-39758451 | None:intergenic | 45.0% |
| GCAAAAGTAAGGGAAACACC+AGG | - | chr4_4:39758433-39758452 | Msa0680640:CDS | 45.0% | |
| ! | CCATGTTTGACTTCAGGTCT+TGG | + | chr4_4:39758504-39758523 | None:intergenic | 45.0% |
| CCAAGACCTGAAGTCAAACA+TGG | - | chr4_4:39758501-39758520 | Msa0680640:intron | 45.0% | |
| AAACATGGCCATATTGGGGA+AGG | - | chr4_4:39758516-39758535 | Msa0680640:intron | 45.0% | |
| ACTCCAGCGTCTTATAGCTA+TGG | - | chr4_4:39758588-39758607 | Msa0680640:intron | 45.0% | |
| ACTTGATCATCTTGAGGGAG+AGG | - | chr4_4:39758765-39758784 | Msa0680640:intron | 45.0% | |
| ATCTACACTAGGTGTAGGTG+GGG | + | chr4_4:39758910-39758929 | None:intergenic | 45.0% | |
| GGCATGCTGTTATCTACACT+AGG | + | chr4_4:39758921-39758940 | None:intergenic | 45.0% | |
| ! | ACTTCTTCATATGGTGGAGG+TGG | + | chr4_4:39758945-39758964 | None:intergenic | 45.0% |
| GAATGGTGTCTATGCTTCTC+AGG | - | chr4_4:39758965-39758984 | Msa0680640:intron | 45.0% | |
| ! | GGTGTGCATTTTACTCATGC+AGG | - | chr4_4:39759105-39759124 | Msa0680640:intron | 45.0% |
| GACAGGTGTCAAACAATGGA+TGG | - | chr4_4:39759410-39759429 | Msa0680640:intron | 45.0% | |
| !! | TCAAACAATGGATGGGCTGA+GGG | - | chr4_4:39759418-39759437 | Msa0680640:intron | 45.0% |
| AATGCAAAGGGAAAGCAGGT+TGG | - | chr4_4:39759443-39759462 | Msa0680640:intron | 45.0% | |
| ! | TCCAGTTGGTTTCTTGCCAT+AGG | - | chr4_4:39759536-39759555 | Msa0680640:intron | 45.0% |
| ! | CCAGTTGGTTTCTTGCCATA+GGG | - | chr4_4:39759537-39759556 | Msa0680640:intron | 45.0% |
| CTTTCGCACCTTGTGTTCTT+AGG | - | chr4_4:39759735-39759754 | Msa0680640:intron | 45.0% | |
| CTTCTGTCACTAACCGTTCC+AGG | + | chr4_4:39756820-39756839 | None:intergenic | 50.0% | |
| TCCAAGGACCGACTAATCCA+AGG | - | chr4_4:39757171-39757190 | Msa0680640:CDS | 50.0% | |
| CCAAGGACCGACTAATCCAA+GGG | - | chr4_4:39757172-39757191 | Msa0680640:CDS | 50.0% | |
| CAAGGACCGACTAATCCAAG+GGG | - | chr4_4:39757173-39757192 | Msa0680640:CDS | 50.0% | |
| ! | CCTCTGGTGCCAATTTAGGT+GGG | + | chr4_4:39757266-39757285 | None:intergenic | 50.0% |
| CCACCTAAATTGGCACCAGA+GGG | - | chr4_4:39757264-39757283 | Msa0680640:intron | 50.0% | |
| ATCGAACCAGAGACCTTGAG+AGG | - | chr4_4:39757288-39757307 | Msa0680640:intron | 50.0% | |
| TTTGCTCCTCTCAAGGTCTC+TGG | + | chr4_4:39757297-39757316 | None:intergenic | 50.0% | |
| ! | CTTGGAGTTTGCTCCTCTCA+AGG | + | chr4_4:39757304-39757323 | None:intergenic | 50.0% |
| !! | TAGTGGTTGGCTTGGGATCT+TGG | + | chr4_4:39757322-39757341 | None:intergenic | 50.0% |
| AAGATCCCAAGCCAACCACT+AGG | - | chr4_4:39757321-39757340 | Msa0680640:intron | 50.0% | |
| ! | TTTGGAGTTGGCCTAGTGGT+TGG | + | chr4_4:39757335-39757354 | None:intergenic | 50.0% |
| ACCACTAGGCCAACTCCAAA+TGG | - | chr4_4:39757335-39757354 | Msa0680640:intron | 50.0% | |
| CCACTAGGCCAACTCCAAAT+GGG | - | chr4_4:39757336-39757355 | Msa0680640:intron | 50.0% | |
| CACTAGGCCAACTCCAAATG+GGG | - | chr4_4:39757337-39757356 | Msa0680640:intron | 50.0% | |
| ACTAGGCCAACTCCAAATGG+GGG | - | chr4_4:39757338-39757357 | Msa0680640:intron | 50.0% | |
| ! | CATGAACCCCCATTTGGAGT+TGG | + | chr4_4:39757347-39757366 | None:intergenic | 50.0% |
| TACAAGTGGTGACTGTCCGA+TGG | + | chr4_4:39757803-39757822 | None:intergenic | 50.0% | |
| GACAACAAGCAACCATGCAC+AGG | + | chr4_4:39758113-39758132 | None:intergenic | 50.0% | |
| TGCAGAGCCCTTAAGAGCAA+TGG | - | chr4_4:39758170-39758189 | Msa0680640:CDS | 50.0% | |
| GCCCTTAAGAGCAATGGTGA+TGG | - | chr4_4:39758176-39758195 | Msa0680640:CDS | 50.0% | |
| !! | AATGGTGATGGGTGCTCCTT+TGG | - | chr4_4:39758188-39758207 | Msa0680640:CDS | 50.0% |
| AGATGCCTAGCATCCTCCAA+AGG | + | chr4_4:39758207-39758226 | None:intergenic | 50.0% | |
| AGCTGCTTCCTTCCCCAATA+TGG | + | chr4_4:39758527-39758546 | None:intergenic | 50.0% | |
| ATCAGAACGGCAGCGTATTG+AGG | - | chr4_4:39758884-39758903 | Msa0680640:intron | 50.0% | |
| ! | TCTTCATATGGTGGAGGTGG+TGG | + | chr4_4:39758942-39758961 | None:intergenic | 50.0% |
| !! | GTCAAACAATGGATGGGCTG+AGG | - | chr4_4:39759417-39759436 | Msa0680640:intron | 50.0% |
| GGTGAATGCAAAGGGAAAGC+AGG | - | chr4_4:39759439-39759458 | Msa0680640:intron | 50.0% | |
| CCCTATGGCAAGAAACCAAC+TGG | + | chr4_4:39759540-39759559 | None:intergenic | 50.0% | |
| !! | GGATTAGTCGGTCCTTGGAC+TGG | + | chr4_4:39757170-39757189 | None:intergenic | 55.0% |
| !! | CCCTTGGATTAGTCGGTCCT+TGG | + | chr4_4:39757175-39757194 | None:intergenic | 55.0% |
| CCCACCTAAATTGGCACCAG+AGG | - | chr4_4:39757263-39757282 | Msa0680640:intron | 55.0% | |
| ! | CCCTCTGGTGCCAATTTAGG+TGG | + | chr4_4:39757267-39757286 | None:intergenic | 55.0% |
| ! | GTCTCTGGTTCGATTCCCTC+TGG | + | chr4_4:39757282-39757301 | None:intergenic | 55.0% |
| !! | GTTGGCCTAGTGGTTGGCTT+GGG | + | chr4_4:39757329-39757348 | None:intergenic | 55.0% |
| ! | AGTTGGCCTAGTGGTTGGCT+TGG | + | chr4_4:39757330-39757349 | None:intergenic | 55.0% |
| ! | CCCATTTGGAGTTGGCCTAG+TGG | + | chr4_4:39757339-39757358 | None:intergenic | 55.0% |
| ! | GTGCTCCTTTGGAGGATGCT+AGG | - | chr4_4:39758199-39758218 | Msa0680640:CDS | 55.0% |
| GGAAGCAGCTGCAGCAATGA+CGG | - | chr4_4:39758537-39758556 | Msa0680640:intron | 55.0% | |
| TGGGCTGAGGGTGAATGCAA+AGG | - | chr4_4:39759430-39759449 | Msa0680640:intron | 55.0% | |
| GGGCTGAGGGTGAATGCAAA+GGG | - | chr4_4:39759431-39759450 | Msa0680640:intron | 55.0% | |
| AAAATCCCACGGCCGCTGCA+TGG | + | chr4_4:39757580-39757599 | None:intergenic | 60.0% | |
| !! | GGTGATGGGTGCTCCTTTGG+AGG | - | chr4_4:39758191-39758210 | Msa0680640:CDS | 60.0% |
| AGCTGCAGCAATGACGGCTG+TGG | - | chr4_4:39758543-39758562 | Msa0680640:intron | 60.0% | |
| ! | CTGTGGAAGCACAGCAGCAG+AGG | - | chr4_4:39758560-39758579 | Msa0680640:intron | 60.0% |
| GGACCAGGTCCTTGCAAGCA+AGG | - | chr4_4:39759492-39759511 | Msa0680640:intron | 60.0% | |
| CCACCTTGCTTGCAAGGACC+TGG | + | chr4_4:39759498-39759517 | None:intergenic | 60.0% | |
| CCAGGTCCTTGCAAGCAAGG+TGG | - | chr4_4:39759495-39759514 | Msa0680640:intron | 60.0% | |
| GGTCCTTGCAAGCAAGGTGG+CGG | - | chr4_4:39759498-39759517 | Msa0680640:intron | 60.0% | |
| CTTCCGCCACCTTGCTTGCA+AGG | + | chr4_4:39759504-39759523 | None:intergenic | 60.0% | |
| CCAATCCCACCGCCCACTTG+CGG | - | chr4_4:39757197-39757216 | Msa0680640:CDS | 65.0% | |
| GCGACAGGATGCTGAAGCCC+AGG | - | chr4_4:39758248-39758267 | Msa0680640:intron | 65.0% | |
| !! | GGCGGTGGGATTGGTCCCCT+TGG | + | chr4_4:39757191-39757210 | None:intergenic | 70.0% |
| CCGCAAGTGGGCGGTGGGAT+TGG | + | chr4_4:39757200-39757219 | None:intergenic | 70.0% | |
| ATCCCACCGCCCACTTGCGG+CGG | - | chr4_4:39757200-39757219 | Msa0680640:CDS | 70.0% | |
| ATGGAGCCCCCGCCGCAAGT+GGG | + | chr4_4:39757212-39757231 | None:intergenic | 70.0% | |
| AATGGAGCCCCCGCCGCAAG+TGG | + | chr4_4:39757213-39757232 | None:intergenic | 70.0% | |
| ACCACACCATGCAGCGGCCG+TGG | - | chr4_4:39757571-39757590 | Msa0680640:intron | 70.0% | |
| CCACACCATGCAGCGGCCGT+GGG | - | chr4_4:39757572-39757591 | Msa0680640:intron | 70.0% | |
| TCCCACCGCCCACTTGCGGC+GGG | - | chr4_4:39757201-39757220 | Msa0680640:CDS | 75.0% | |
| CCCACGGCCGCTGCATGGTG+TGG | + | chr4_4:39757575-39757594 | None:intergenic | 75.0% | |
| ! | CCCCGCCGCAAGTGGGCGGT+GGG | + | chr4_4:39757205-39757224 | None:intergenic | 80.0% |
| ! | CCCACCGCCCACTTGCGGCG+GGG | - | chr4_4:39757202-39757221 | Msa0680640:CDS | 80.0% |
| ! | CCACCGCCCACTTGCGGCGG+GGG | - | chr4_4:39757203-39757222 | Msa0680640:CDS | 80.0% |
| ! | GAGCCCCCGCCGCAAGTGGG+CGG | + | chr4_4:39757209-39757228 | None:intergenic | 80.0% |
| ! | CCCCCGCCGCAAGTGGGCGG+TGG | + | chr4_4:39757206-39757225 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 39756787 | 39759876 | 39756787 | ID=Msa0680640;Name=Msa0680640 |
| chr4_4 | mRNA | 39756787 | 39759876 | 39756787 | ID=Msa0680640-mRNA-1;Parent=Msa0680640;Name=Msa0680640-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|0.66|0.57|0.85|1|1|7|345|252 |
| chr4_4 | exon | 39756787 | 39757248 | 39756787 | ID=Msa0680640-mRNA-1:exon:9477;Parent=Msa0680640-mRNA-1 |
| chr4_4 | exon | 39757462 | 39757536 | 39757462 | ID=Msa0680640-mRNA-1:exon:9476;Parent=Msa0680640-mRNA-1 |
| chr4_4 | exon | 39757632 | 39757784 | 39757632 | ID=Msa0680640-mRNA-1:exon:9475;Parent=Msa0680640-mRNA-1 |
| chr4_4 | exon | 39757868 | 39757939 | 39757868 | ID=Msa0680640-mRNA-1:exon:9474;Parent=Msa0680640-mRNA-1 |
| chr4_4 | exon | 39758054 | 39758254 | 39758054 | ID=Msa0680640-mRNA-1:exon:9473;Parent=Msa0680640-mRNA-1 |
| chr4_4 | exon | 39758394 | 39758495 | 39758394 | ID=Msa0680640-mRNA-1:exon:9472;Parent=Msa0680640-mRNA-1 |
| chr4_4 | exon | 39759838 | 39759876 | 39759838 | ID=Msa0680640-mRNA-1:exon:9471;Parent=Msa0680640-mRNA-1 |
| chr4_4 | CDS | 39759838 | 39759876 | 39759838 | ID=Msa0680640-mRNA-1:cds;Parent=Msa0680640-mRNA-1 |
| chr4_4 | CDS | 39758394 | 39758495 | 39758394 | ID=Msa0680640-mRNA-1:cds;Parent=Msa0680640-mRNA-1 |
| chr4_4 | CDS | 39758054 | 39758254 | 39758054 | ID=Msa0680640-mRNA-1:cds;Parent=Msa0680640-mRNA-1 |
| chr4_4 | CDS | 39757868 | 39757939 | 39757868 | ID=Msa0680640-mRNA-1:cds;Parent=Msa0680640-mRNA-1 |
| chr4_4 | CDS | 39757632 | 39757784 | 39757632 | ID=Msa0680640-mRNA-1:cds;Parent=Msa0680640-mRNA-1 |
| chr4_4 | CDS | 39757462 | 39757536 | 39757462 | ID=Msa0680640-mRNA-1:cds;Parent=Msa0680640-mRNA-1 |
| chr4_4 | CDS | 39757132 | 39757248 | 39757132 | ID=Msa0680640-mRNA-1:cds;Parent=Msa0680640-mRNA-1 |
| chr4_4 | three_prime_UTR | 39756787 | 39757131 | 39756787 | ID=Msa0680640-mRNA-1:three_prime_utr;Parent=Msa0680640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
