Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1415340 | sp|Q8VWF1|SH3P2_ARATH | 77.045 | 379 | 76 | 3 | 1 | 379 | 1 | 368 | 0.0 | 597 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1415340 | G7J7R7 | 97.098 | 379 | 3 | 2 | 1 | 379 | 1 | 371 | 0.0 | 748 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0680640 | Msa1415340 | 0.931309 | 4.567572e-94 | -8.615850e-47 |
| Msa0475930 | Msa1415340 | 0.892902 | 1.033844e-74 | -8.615850e-47 |
| Msa0523910 | Msa1415340 | 0.896657 | 2.990373e-76 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1415340 | MtrunA17_Chr3g0145091 | 97.098 | 379 | 3 | 2 | 1 | 379 | 1 | 371 | 0.0 | 748 |
| Msa1415340 | MtrunA17_Chr4g0035851 | 87.895 | 380 | 37 | 3 | 1 | 379 | 1 | 372 | 0.0 | 636 |
| Msa1415340 | MtrunA17_Chr8g0380121 | 52.368 | 380 | 148 | 9 | 1 | 379 | 1 | 348 | 9.79e-123 | 358 |
| Msa1415340 | MtrunA17_Chr5g0408971 | 48.312 | 385 | 172 | 8 | 1 | 377 | 1 | 366 | 2.86e-113 | 335 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1415340 | AT4G34660.1 | 77.045 | 379 | 76 | 3 | 1 | 379 | 1 | 368 | 0.0 | 597 |
| Msa1415340 | AT4G34660.2 | 73.351 | 379 | 67 | 3 | 1 | 379 | 1 | 345 | 0.0 | 568 |
| Msa1415340 | AT4G34660.3 | 66.491 | 379 | 65 | 5 | 1 | 379 | 1 | 317 | 7.69e-171 | 479 |
| Msa1415340 | AT4G18060.1 | 52.493 | 381 | 149 | 8 | 1 | 379 | 1 | 351 | 7.19e-131 | 379 |
| Msa1415340 | AT1G31440.1 | 42.697 | 445 | 175 | 8 | 1 | 377 | 1 | 433 | 6.02e-108 | 324 |
| Msa1415340 | AT4G39020.1 | 68.235 | 85 | 27 | 0 | 295 | 379 | 85 | 169 | 2.17e-37 | 133 |
Find 138 sgRNAs with CRISPR-Local
Find 426 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAAATTGATTTGTGATTT+AGG | 0.163304 | tig0024203:-3942 | Msa1415340:three_prime_UTR |
| CCTCAAGATGATCAAGTATT+TGG | 0.207462 | tig0024203:+4804 | None:intergenic |
| CTTTCGCACCTTGTGTTCTT+AGG | 0.209218 | tig0024203:-3828 | Msa1415340:three_prime_UTR |
| TGCTGAAACAGTTTGGGGCT+GGG | 0.217852 | tig0024203:-8402 | Msa1415340:CDS |
| GTGCTGAAACAGTTTGGGGC+TGG | 0.250806 | tig0024203:-8403 | Msa1415340:CDS |
| TTTGTCTTGTTTCTTTGTTT+TGG | 0.281231 | tig0024203:-9199 | Msa1415340:five_prime_UTR |
| TAATGGCATAACTGACAGTA+TGG | 0.305114 | tig0024203:-4571 | Msa1415340:CDS |
| ACCCATCACCATTGCTCTTA+AGG | 0.311073 | tig0024203:+5385 | None:intergenic |
| GTAGAAGGTTACATTGTTAC+TGG | 0.311388 | tig0024203:-8154 | Msa1415340:CDS |
| ATATGGAGGTTCGGATAATA+TGG | 0.313809 | tig0024203:-8377 | Msa1415340:CDS |
| AGGCTGTGCTGAAACAGTTT+GGG | 0.315561 | tig0024203:-8408 | Msa1415340:CDS |
| GAAGTCAAACATGGCCATAT+TGG | 0.316099 | tig0024203:-5053 | Msa1415340:CDS |
| TGCTGAAAATATTATGAAAC+TGG | 0.318785 | tig0024203:-5104 | Msa1415340:CDS |
| GACAGTATGGGTTACTTCTT+AGG | 0.321074 | tig0024203:-4558 | Msa1415340:CDS |
| AAGTCAAACATGGCCATATT+GGG | 0.328488 | tig0024203:-5052 | Msa1415340:CDS |
| CCATGTTTGACTTCAGGTCT+TGG | 0.331661 | tig0024203:+5062 | None:intergenic |
| TTGTGAATGTGTTCGTGTTT+TGG | 0.333490 | tig0024203:-4002 | Msa1415340:three_prime_UTR |
| TAGGCTGTGCTGAAACAGTT+TGG | 0.335056 | tig0024203:-8409 | Msa1415340:CDS |
| TTACTGGAGGAATATATTCT+TGG | 0.341447 | tig0024203:+3780 | None:intergenic |
| GGATCAAAGCAAGTTGAAAT+AGG | 0.341883 | tig0024203:-8133 | Msa1415340:intron |
| ATATGGCCATGTTTGACTTC+AGG | 0.342498 | tig0024203:+5056 | None:intergenic |
| GCTGAAACAGTTTGGGGCTG+GGG | 0.344123 | tig0024203:-8401 | Msa1415340:CDS |
| AATGGTGATGGGTGCTCCTT+TGG | 0.360393 | tig0024203:-5375 | Msa1415340:CDS |
| AGCTGCTTCCTTCCCCAATA+TGG | 0.361155 | tig0024203:+5039 | None:intergenic |
| ATATTCCTCCAGTAATTATA+TGG | 0.361319 | tig0024203:-3772 | Msa1415340:three_prime_UTR |
| CAATAGCACCATATAATTAC+TGG | 0.364454 | tig0024203:+3764 | None:intergenic |
| TTGAATTAAATTGAATTGAA+TGG | 0.369588 | tig0024203:-9068 | Msa1415340:exon |
| TCAGAAGATAGCAGGAAATA+TGG | 0.369835 | tig0024203:-7879 | Msa1415340:CDS |
| CCCATCACCATTGCTCTTAA+GGG | 0.378074 | tig0024203:+5386 | None:intergenic |
| AACTTCAGACTCAGCATGAT+AGG | 0.393217 | tig0024203:+4426 | None:intergenic |
| ATAATTGACAAAATTAGCTT+TGG | 0.394974 | tig0024203:-3719 | Msa1415340:three_prime_UTR |
| AGCGACTTGTTCTCTGAGCT+TGG | 0.399794 | tig0024203:+9024 | None:intergenic |
| TTGGAGCACTCTTTGATGAT+AGG | 0.401284 | tig0024203:+4823 | None:intergenic |
| TAACTCTTCCATTGCATTGG+AGG | 0.406254 | tig0024203:-3866 | Msa1415340:three_prime_UTR |
| TTGAACTGAATTTATCAGTT+GGG | 0.407755 | tig0024203:-4405 | Msa1415340:CDS |
| GATATTGTCCGTGGAGTAGA+AGG | 0.411921 | tig0024203:-8169 | Msa1415340:CDS |
| CCCTATGGCAAGAAACCAAC+TGG | 0.418105 | tig0024203:+4026 | None:intergenic |
| ACACCATTCACTTCTTCATA+TGG | 0.418813 | tig0024203:+4612 | None:intergenic |
| TGCACATGCCCGTGCACAAA+TGG | 0.428414 | tig0024203:-7802 | Msa1415340:CDS |
| ACAAGTCGCTCGCCAACAAC+AGG | 0.429620 | tig0024203:-9011 | Msa1415340:intron |
| CCACCTTGCTTGCAAGGACC+TGG | 0.436876 | tig0024203:+4068 | None:intergenic |
| AAAGCAGGTTGGTTTCCATT+TGG | 0.437998 | tig0024203:-4109 | Msa1415340:CDS |
| TCTTCATATGGTGGAGGTGG+TGG | 0.441768 | tig0024203:+4624 | None:intergenic |
| CCAGTTGGTTTCTTGCCATA+GGG | 0.447327 | tig0024203:-4026 | Msa1415340:three_prime_UTR |
| CATTTGGTTATGTTGAAAGA+AGG | 0.450802 | tig0024203:-4093 | Msa1415340:CDS |
| TCATAACTCTTCCATTGCAT+TGG | 0.457106 | tig0024203:-3869 | Msa1415340:three_prime_UTR |
| GAATGGTGTCTATGCTTCTC+AGG | 0.460161 | tig0024203:-4598 | Msa1415340:CDS |
| CTAAACGCCAGGCAAAAGTA+AGG | 0.465429 | tig0024203:-5141 | Msa1415340:CDS |
| TATGCTTCTCAGGAACATAA+TGG | 0.468519 | tig0024203:-4588 | Msa1415340:CDS |
| GACAGGTGTCAAACAATGGA+TGG | 0.474962 | tig0024203:-4153 | Msa1415340:intron |
| CTTCCGCCACCTTGCTTGCA+AGG | 0.475894 | tig0024203:+4062 | None:intergenic |
| TTCTTTCTCCATTTGTGCAC+GGG | 0.480707 | tig0024203:+7794 | None:intergenic |
| TCCAGTTGGTTTCTTGCCAT+AGG | 0.483850 | tig0024203:-4027 | Msa1415340:three_prime_UTR |
| CAAATACTTGATCATCTTGA+GGG | 0.487070 | tig0024203:-4803 | Msa1415340:CDS |
| CTTCTTTCAACATAACCAAA+TGG | 0.487119 | tig0024203:+4094 | None:intergenic |
| GGTGATGGGTGCTCCTTTGG+AGG | 0.492968 | tig0024203:-5372 | Msa1415340:CDS |
| ACTTCTTCATATGGTGGAGG+TGG | 0.493280 | tig0024203:+4621 | None:intergenic |
| GGGCTGAGGGTGAATGCAAA+GGG | 0.500360 | tig0024203:-4132 | Msa1415340:CDS |
| CCGTGTTGGTGGTGGAGTCT+TGG | 0.503254 | tig0024203:-9164 | Msa1415340:five_prime_UTR |
| GTTCTTTCTCCATTTGTGCA+CGG | 0.505811 | tig0024203:+7793 | None:intergenic |
| GTGCTCCTTTGGAGGATGCT+AGG | 0.510304 | tig0024203:-5364 | Msa1415340:CDS |
| TTTCTTTCAGCATTATCAAA+GGG | 0.513025 | tig0024203:-8191 | Msa1415340:intron |
| TATTGAAGTTTCTAAACGCC+AGG | 0.513265 | tig0024203:-5152 | Msa1415340:CDS |
| GTTGAACTGAATTTATCAGT+TGG | 0.517089 | tig0024203:-4406 | Msa1415340:CDS |
| ATTTGGTTATGTTGAAAGAA+GGG | 0.517567 | tig0024203:-4092 | Msa1415340:CDS |
| GACTTGTTCTCTGAGCTTGG+AGG | 0.518509 | tig0024203:+9027 | None:intergenic |
| TATCTACACTAGGTGTAGGT+GGG | 0.518680 | tig0024203:+4655 | None:intergenic |
| TTCAATTTAATTCAAAAGAG+AGG | 0.519974 | tig0024203:+9076 | None:intergenic |
| CCCTTAAGAGCAATGGTGAT+GGG | 0.520874 | tig0024203:-5386 | Msa1415340:CDS |
| TTATCTACACTAGGTGTAGG+TGG | 0.524126 | tig0024203:+4654 | None:intergenic |
| CTGTTATCTACACTAGGTGT+AGG | 0.524825 | tig0024203:+4651 | None:intergenic |
| CTGTGGAAGCACAGCAGCAG+AGG | 0.527729 | tig0024203:-5003 | Msa1415340:CDS |
| AGGGGAAGGGAACCTGTTGT+TGG | 0.530921 | tig0024203:+8999 | None:intergenic |
| TGAACTGAATTTATCAGTTG+GGG | 0.532330 | tig0024203:-4404 | Msa1415340:CDS |
| CATATCCACACGTGCAGGAA+AGG | 0.533423 | tig0024203:-8305 | Msa1415340:intron |
| GGTCCTTGCAAGCAAGGTGG+CGG | 0.537462 | tig0024203:-4065 | Msa1415340:CDS |
| CTGAAACAGTTTGGGGCTGG+GGG | 0.538217 | tig0024203:-8400 | Msa1415340:CDS |
| CAAAGGTGTCAGAAGATAGC+AGG | 0.539497 | tig0024203:-7887 | Msa1415340:CDS |
| ACTTGATCATCTTGAGGGAG+AGG | 0.539980 | tig0024203:-4798 | Msa1415340:CDS |
| ATCAGAACGGCAGCGTATTG+AGG | 0.541345 | tig0024203:-4679 | Msa1415340:CDS |
| GGTGAATGCAAAGGGAAAGC+AGG | 0.542608 | tig0024203:-4124 | Msa1415340:CDS |
| CCAAATACTTGATCATCTTG+AGG | 0.543542 | tig0024203:-4804 | Msa1415340:CDS |
| GGCTGTGCTGAAACAGTTTG+GGG | 0.543764 | tig0024203:-8407 | Msa1415340:CDS |
| ATTTCTTTCAGCATTATCAA+AGG | 0.545451 | tig0024203:-8192 | Msa1415340:intron |
| TTCACTTCTTCATATGGTGG+AGG | 0.545910 | tig0024203:+4618 | None:intergenic |
| GCCCTTAAGAGCAATGGTGA+TGG | 0.546031 | tig0024203:-5387 | Msa1415340:CDS |
| GGGAACTTACTAAAAGCTCT+TGG | 0.551243 | tig0024203:-7768 | Msa1415340:CDS |
| GGACCAGGTCCTTGCAAGCA+AGG | 0.553869 | tig0024203:-4071 | Msa1415340:CDS |
| GTCAAACAATGGATGGGCTG+AGG | 0.554397 | tig0024203:-4146 | Msa1415340:CDS |
| TGGGCTGAGGGTGAATGCAA+AGG | 0.554437 | tig0024203:-4133 | Msa1415340:CDS |
| CTTTACATATCCACACGTGC+AGG | 0.554567 | tig0024203:-8310 | Msa1415340:CDS |
| GGATTATATTGTCATTCGAA+AGG | 0.558804 | tig0024203:-4383 | Msa1415340:intron |
| ACTAGAAACCGTGTTGGTGG+TGG | 0.562391 | tig0024203:-9172 | Msa1415340:five_prime_UTR |
| GCGACAGGATGCTGAAGCCC+AGG | 0.562762 | tig0024203:-5315 | Msa1415340:intron |
| ACTCCAGCGTCTTATAGCTA+TGG | 0.563682 | tig0024203:-4975 | Msa1415340:intron |
| ACTTCAGACTCAGCATGATA+GGG | 0.565386 | tig0024203:+4427 | None:intergenic |
| ACGTTATGACAGAATGCGAC+AGG | 0.570308 | tig0024203:-5330 | Msa1415340:CDS |
| TGCAGAGCCCTTAAGAGCAA+TGG | 0.574125 | tig0024203:-5393 | Msa1415340:CDS |
| AGTAACCTTTCCTGCACGTG+TGG | 0.574166 | tig0024203:+8300 | None:intergenic |
| TCTTGATAACGTGCTACCAC+TGG | 0.575621 | tig0024203:+7839 | None:intergenic |
| ATCTACACTAGGTGTAGGTG+GGG | 0.575722 | tig0024203:+4656 | None:intergenic |
| TCAAACAATGGATGGGCTGA+GGG | 0.578585 | tig0024203:-4145 | Msa1415340:CDS |
| TATGAACACCTCCAATGCAA+TGG | 0.578677 | tig0024203:+3858 | None:intergenic |
| GAACACATTCACAATCCCTA+TGG | 0.586341 | tig0024203:+4011 | None:intergenic |
| CCACCATATGAAGAAGTGAA+TGG | 0.586782 | tig0024203:-4615 | Msa1415340:CDS |
| CCATTCACTTCTTCATATGG+TGG | 0.591442 | tig0024203:+4615 | None:intergenic |
| TTATGTTGAAAGAAGGGACC+AGG | 0.597893 | tig0024203:-4086 | Msa1415340:CDS |
| CTTAATAACCTAAGAACACA+AGG | 0.598861 | tig0024203:+3820 | None:intergenic |
| AAACATGGCCATATTGGGGA+AGG | 0.604010 | tig0024203:-5047 | Msa1415340:CDS |
| ACTAAAAGCTCTTGGCACAC+AGG | 0.606319 | tig0024203:-7760 | Msa1415340:intron |
| AATGCAAAGGGAAAGCAGGT+TGG | 0.608458 | tig0024203:-4120 | Msa1415340:CDS |
| TCTATCGATCGATAATCGCA+TGG | 0.614516 | tig0024203:+3907 | None:intergenic |
| TATGGGTTACTTCTTAGGAG+AGG | 0.616229 | tig0024203:-4553 | Msa1415340:intron |
| ATGTTATTTAATAGGAACAA+AGG | 0.619754 | tig0024203:-7904 | Msa1415340:intron |
| CAAAGAAACAAGACAAACAG+AGG | 0.624976 | tig0024203:+9205 | None:intergenic |
| CCAAGACCTGAAGTCAAACA+TGG | 0.625705 | tig0024203:-5062 | Msa1415340:CDS |
| TAAACGCCAGGCAAAAGTAA+GGG | 0.626804 | tig0024203:-5140 | Msa1415340:CDS |
| GCACAAATGGAGAAAGAACG+TGG | 0.633748 | tig0024203:-7789 | Msa1415340:CDS |
| TCAGAAAATACTTGTACCAG+TGG | 0.634478 | tig0024203:-7855 | Msa1415340:CDS |
| CAATGTAACCTTCTACTCCA+CGG | 0.635038 | tig0024203:+8161 | None:intergenic |
| AGCTGCAGCAATGACAGCTG+TGG | 0.636461 | tig0024203:-5020 | Msa1415340:CDS |
| AGTCAAACATGGCCATATTG+GGG | 0.637825 | tig0024203:-5051 | Msa1415340:CDS |
| ATACCATAGCTATAAGACGC+TGG | 0.640354 | tig0024203:+4972 | None:intergenic |
| AATGGCATAACTGACAGTAT+GGG | 0.640455 | tig0024203:-4570 | Msa1415340:CDS |
| AGATGCCTAGCATCCTCCAA+AGG | 0.642878 | tig0024203:+5359 | None:intergenic |
| GGTACAACTAGAAACCGTGT+TGG | 0.644367 | tig0024203:-9178 | Msa1415340:five_prime_UTR |
| TATCAAAGGGATATTGTCCG+TGG | 0.648998 | tig0024203:-8178 | Msa1415340:CDS |
| ACAACTAGAAACCGTGTTGG+TGG | 0.651132 | tig0024203:-9175 | Msa1415340:five_prime_UTR |
| GGCATGCTGTTATCTACACT+AGG | 0.651577 | tig0024203:+4645 | None:intergenic |
| ACAGGTGTCAAACAATGGAT+GGG | 0.661310 | tig0024203:-4152 | Msa1415340:intron |
| CCAAGACTCCACCACCAACA+CGG | 0.661774 | tig0024203:+9164 | None:intergenic |
| AATGATAGATGATATCAGAA+CGG | 0.667024 | tig0024203:-4692 | Msa1415340:intron |
| GGATAATATGGTTACTGACG+AGG | 0.675143 | tig0024203:-8365 | Msa1415340:CDS |
| AAAGAAACAAGACAAACAGA+GGG | 0.676607 | tig0024203:+9206 | None:intergenic |
| CCAGGTCCTTGCAAGCAAGG+TGG | 0.677427 | tig0024203:-4068 | Msa1415340:CDS |
| GCAAAAGTAAGGGAAACACC+AGG | 0.682366 | tig0024203:-5130 | Msa1415340:CDS |
| TAGCACCATATAATTACTGG+AGG | 0.687741 | tig0024203:+3767 | None:intergenic |
| CACAAATGGAGAAAGAACGT+GGG | 0.696312 | tig0024203:-7788 | Msa1415340:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTTTATGATAAAAATAAAT+CGG | + | tig0024203:5690-5709 | None:intergenic | 10.0% |
| !!! | TTATTTATTTTTTGAAAACT+TGG | - | tig0024203:6505-6524 | Msa1415340:intron | 10.0% |
| !! | AAAAGAAAAAATAAAAAAAC+TGG | + | tig0024203:7665-7684 | None:intergenic | 10.0% |
| !!! | GTTTTTTTATTTTTTCTTTT+TGG | - | tig0024203:7665-7684 | Msa1415340:intron | 10.0% |
| !! | TTGAATTAAATTGAATTGAA+TGG | - | tig0024203:3859-3878 | Msa1415340:three_prime_UTR | 15.0% |
| !!! | TTCTATACATGTTATTTAAT+AGG | - | tig0024203:5015-5034 | Msa1415340:CDS | 15.0% |
| !!! | TTGTTTTCTATTTTTGTTTT+TGG | - | tig0024203:5421-5440 | Msa1415340:intron | 15.0% |
| !! | TTGTGATATTGATAAAATAT+TGG | + | tig0024203:5864-5883 | None:intergenic | 15.0% |
| !!! | TTATTTTTAAACTTGTCTTT+TGG | - | tig0024203:6732-6751 | Msa1415340:intron | 15.0% |
| !! | TTGAAATTGGTAAAAAATAT+TGG | + | tig0024203:7025-7044 | None:intergenic | 15.0% |
| !! | ATCAAAAAGAAAACAATATT+GGG | + | tig0024203:7057-7076 | None:intergenic | 15.0% |
| !! | TATCAAAAAGAAAACAATAT+TGG | + | tig0024203:7058-7077 | None:intergenic | 15.0% |
| !!! | TTTCTATTTTAAAATGATCT+GGG | - | tig0024203:7091-7110 | Msa1415340:intron | 15.0% |
| !!! | TTGTTCGTAATTTATTTTTT+CGG | - | tig0024203:8714-8733 | Msa1415340:intron | 15.0% |
| !! | TTCAATTTAATTCAAAAGAG+AGG | + | tig0024203:3854-3873 | None:intergenic | 20.0% |
| !! | AGATAATACCAATAATAAGT+TGG | - | tig0024203:4104-4123 | Msa1415340:CDS | 20.0% |
| !!! | TAACTTCATTTTAGAAATGA+GGG | + | tig0024203:4380-4399 | None:intergenic | 20.0% |
| !! | TTGAAATAGGTTAGTAATAT+TGG | - | tig0024203:4807-4826 | Msa1415340:CDS | 20.0% |
| !! | ATAAGATATTAGAAATAGAG+AGG | + | tig0024203:4929-4948 | None:intergenic | 20.0% |
| !! | AATATCTTATATTCATGCAT+TGG | - | tig0024203:4939-4958 | Msa1415340:intron | 20.0% |
| !! | AAATTCAATGACAATATGAT+AGG | + | tig0024203:4991-5010 | None:intergenic | 20.0% |
| !!! | ATGTTATTTAATAGGAACAA+AGG | - | tig0024203:5023-5042 | Msa1415340:CDS | 20.0% |
| !! | ATGATAATTTAACATTACAG+TGG | + | tig0024203:5304-5323 | None:intergenic | 20.0% |
| !! | AATGTTAAATTATCATTGCT+TGG | - | tig0024203:5308-5327 | Msa1415340:intron | 20.0% |
| !!! | GAAAAAACAGTTTTAAAATC+TGG | + | tig0024203:5737-5756 | None:intergenic | 20.0% |
| !!! | TTAAACAAGTTCTAGAAAAT+TGG | + | tig0024203:5806-5825 | None:intergenic | 20.0% |
| !!! | CTTTATTTTCCTACATTTTT+GGG | + | tig0024203:5904-5923 | None:intergenic | 20.0% |
| !! | TATAATAGTTAATTACACAG+AGG | - | tig0024203:6308-6327 | Msa1415340:intron | 20.0% |
| !! | GAATTAAATCAATAATGCAA+TGG | + | tig0024203:6366-6385 | None:intergenic | 20.0% |
| !!! | TTTATTGGTGTATATCTTTT+GGG | - | tig0024203:6765-6784 | Msa1415340:intron | 20.0% |
| !! | TATATTTGTTTAAAAACCTC+AGG | - | tig0024203:6795-6814 | Msa1415340:intron | 20.0% |
| !!! | CTGATTTTAAAAACAAAAAC+CGG | - | tig0024203:6818-6837 | Msa1415340:intron | 20.0% |
| !! | TTGATTTATGAAAAACAAAC+CGG | - | tig0024203:6848-6867 | Msa1415340:intron | 20.0% |
| !!! | TTTTTTACCAATTTCAAATG+TGG | - | tig0024203:7028-7047 | Msa1415340:intron | 20.0% |
| !!! | TTTTTACCAATTTCAAATGT+GGG | - | tig0024203:7029-7048 | Msa1415340:intron | 20.0% |
| !!! | TATTGTTTTCTTTTTGATAC+AGG | - | tig0024203:7059-7078 | Msa1415340:intron | 20.0% |
| !!! | GTTTCTATTTTAAAATGATC+TGG | - | tig0024203:7090-7109 | Msa1415340:intron | 20.0% |
| !! | AAATTGAAACAATTCAACAA+GGG | + | tig0024203:7320-7339 | None:intergenic | 20.0% |
| !! | AAAATTGAAACAATTCAACA+AGG | + | tig0024203:7321-7340 | None:intergenic | 20.0% |
| !! | TACTCAGTTAGATTTAATAT+TGG | + | tig0024203:7386-7405 | None:intergenic | 20.0% |
| !! | TTATTTGAACATTGAAGTAT+TGG | - | tig0024203:7498-7517 | Msa1415340:intron | 20.0% |
| !!! | ATAGATTGCTATTTTTAAGT+GGG | + | tig0024203:8054-8073 | None:intergenic | 20.0% |
| !!! | AATAGATTGCTATTTTTAAG+TGG | + | tig0024203:8055-8074 | None:intergenic | 20.0% |
| !! | CTTGATATCAAAAGATAATT+CGG | + | tig0024203:8189-8208 | None:intergenic | 20.0% |
| !! | ATTTGTAACCTTAAAAGAAA+TGG | + | tig0024203:8405-8424 | None:intergenic | 20.0% |
| !! | CAAGTAAAAAATAGAAAAGA+GGG | + | tig0024203:8659-8678 | None:intergenic | 20.0% |
| !!! | TGTTCGTAATTTATTTTTTC+GGG | - | tig0024203:8715-8734 | Msa1415340:intron | 20.0% |
| !! | AAATCACAATCATATTTGTT+AGG | + | tig0024203:8753-8772 | None:intergenic | 20.0% |
| !!! | AGAAAATTGATTTGTGATTT+AGG | - | tig0024203:8985-9004 | Msa1415340:intron | 20.0% |
| !!! | ATAATTGACAAAATTAGCTT+TGG | - | tig0024203:9208-9227 | Msa1415340:five_prime_UTR | 20.0% |
| !!! | TTTGTCTTGTTTCTTTGTTT+TGG | - | tig0024203:3728-3747 | Msa1415340:three_prime_UTR | 25.0% |
| ! | ATAAAATCACGAGTACAAAA+AGG | + | tig0024203:4011-4030 | None:intergenic | 25.0% |
| ! | ATTGGTATTATCTACGATTT+AGG | + | tig0024203:4097-4116 | None:intergenic | 25.0% |
| ! | CTCAAAATCCAACTTATTAT+TGG | + | tig0024203:4115-4134 | None:intergenic | 25.0% |
| ! | CTTAACAAGTGTTTATATGT+GGG | - | tig0024203:4310-4329 | Msa1415340:intron | 25.0% |
| ! | TTAACAAGTGTTTATATGTG+GGG | - | tig0024203:4311-4330 | Msa1415340:intron | 25.0% |
| !!! | GTAACTTCATTTTAGAAATG+AGG | + | tig0024203:4381-4400 | None:intergenic | 25.0% |
| ! | AGTAAGAAAAAATTGAGAAG+TGG | + | tig0024203:4445-4464 | None:intergenic | 25.0% |
| ! | GTGATTAATTATTAACACCA+CGG | + | tig0024203:4485-4504 | None:intergenic | 25.0% |
| ! | AATCACAATTGTTGTGATTT+AGG | - | tig0024203:4499-4518 | Msa1415340:intron | 25.0% |
| ! | ATTTCTTTCAGCATTATCAA+AGG | - | tig0024203:4735-4754 | Msa1415340:intron | 25.0% |
| ! | TTTCTTTCAGCATTATCAAA+GGG | - | tig0024203:4736-4755 | Msa1415340:intron | 25.0% |
| ! | AATAGGTTAGTAATATTGGT+TGG | - | tig0024203:4811-4830 | Msa1415340:CDS | 25.0% |
| ! | AGTGGAAATCTACATTATTT+CGG | + | tig0024203:5279-5298 | None:intergenic | 25.0% |
| ! | TTAAATTATCATTGCTTGGA+TGG | - | tig0024203:5312-5331 | Msa1415340:intron | 25.0% |
| ! | GAAAGTCGAAATTTAAGTAT+TGG | - | tig0024203:5479-5498 | Msa1415340:intron | 25.0% |
| ! | TAGACTATTCATTATCTGAA+AGG | - | tig0024203:5547-5566 | Msa1415340:intron | 25.0% |
| ! | AGACTATTCATTATCTGAAA+GGG | - | tig0024203:5548-5567 | Msa1415340:intron | 25.0% |
| !! | GAAGTGATAGAAAATTTTGA+TGG | - | tig0024203:5572-5591 | Msa1415340:intron | 25.0% |
| !!! | TAGAAAATTTTGATGGTGTA+TGG | - | tig0024203:5579-5598 | Msa1415340:intron | 25.0% |
| ! | ATATTTATAGGGTGGAAATT+AGG | + | tig0024203:5629-5648 | None:intergenic | 25.0% |
| ! | TAATTTCCACCCTATAAATA+TGG | - | tig0024203:5628-5647 | Msa1415340:intron | 25.0% |
| ! | TTCCAAATCTGATTAAAAAC+TGG | - | tig0024203:5754-5773 | Msa1415340:intron | 25.0% |
| !! | TACCAGTTTTTAATCAGATT+TGG | + | tig0024203:5759-5778 | None:intergenic | 25.0% |
| !!! | GCTTTATTTTCCTACATTTT+TGG | + | tig0024203:5905-5924 | None:intergenic | 25.0% |
| ! | TTGATACTTATATCCTTTGT+AGG | + | tig0024203:5994-6013 | None:intergenic | 25.0% |
| !! | AAATTATGATCGCTTTGAAT+TGG | + | tig0024203:6130-6149 | None:intergenic | 25.0% |
| ! | GTTAACACTAAAATTACACA+TGG | - | tig0024203:6221-6240 | Msa1415340:intron | 25.0% |
| ! | ATCAATAATGCAATGGTTAT+TGG | + | tig0024203:6359-6378 | None:intergenic | 25.0% |
| !!! | TTTGGTCTTTTGTTGTTTAT+TGG | - | tig0024203:6750-6769 | Msa1415340:intron | 25.0% |
| !! | GTTTATTGGTGTATATCTTT+TGG | - | tig0024203:6764-6783 | Msa1415340:intron | 25.0% |
| ! | TTCATAAATCAATTCAGAAC+CGG | + | tig0024203:6840-6859 | None:intergenic | 25.0% |
| !!! | GAATCACAAAAACCATTTTT+AGG | - | tig0024203:6990-7009 | Msa1415340:intron | 25.0% |
| !!! | ACAAAAACCATTTTTAGGTT+TGG | - | tig0024203:6995-7014 | Msa1415340:intron | 25.0% |
| !!! | CAAAAACCATTTTTAGGTTT+GGG | - | tig0024203:6996-7015 | Msa1415340:intron | 25.0% |
| !! | TTTTCTTTTTGATACAGGTA+AGG | - | tig0024203:7064-7083 | Msa1415340:intron | 25.0% |
| ! | ATACATGTAAACGTAATTCT+TGG | - | tig0024203:7219-7238 | Msa1415340:intron | 25.0% |
| ! | AATTGAAACAATTCAACAAG+GGG | + | tig0024203:7319-7338 | None:intergenic | 25.0% |
| ! | GTTAGATTTAATATTGGACT+TGG | + | tig0024203:7380-7399 | None:intergenic | 25.0% |
| ! | AAATGAAAATCAAGATACCT+GGG | + | tig0024203:7632-7651 | None:intergenic | 25.0% |
| ! | AAAATGAAAATCAAGATACC+TGG | + | tig0024203:7633-7652 | None:intergenic | 25.0% |
| ! | TGCTGAAAATATTATGAAAC+TGG | - | tig0024203:7823-7842 | Msa1415340:CDS | 25.0% |
| !!! | CAATCTATTTCTGATTATGA+AGG | - | tig0024203:8066-8085 | Msa1415340:intron | 25.0% |
| ! | AATGATAGATGATATCAGAA+CGG | - | tig0024203:8235-8254 | Msa1415340:intron | 25.0% |
| ! | AGAAAGTAAAGTAAGCTAAA+CGG | + | tig0024203:8449-8468 | None:intergenic | 25.0% |
| ! | TTGAACTGAATTTATCAGTT+GGG | - | tig0024203:8522-8541 | Msa1415340:intron | 25.0% |
| ! | GCAAGTAAAAAATAGAAAAG+AGG | + | tig0024203:8660-8679 | None:intergenic | 25.0% |
| !!! | AATATGATTGTGATTTTGAC+AGG | - | tig0024203:8757-8776 | Msa1415340:intron | 25.0% |
| ! | ATTTGGTTATGTTGAAAGAA+GGG | - | tig0024203:8835-8854 | Msa1415340:intron | 25.0% |
| ! | ATATTCCTCCAGTAATTATA+TGG | - | tig0024203:9155-9174 | Msa1415340:five_prime_UTR | 25.0% |
| AAAGAAACAAGACAAACAGA+GGG | + | tig0024203:3724-3743 | None:intergenic | 30.0% | |
| AATCGAATTGAAAGCGAAAT+AGG | + | tig0024203:3980-3999 | None:intergenic | 30.0% | |
| ATTGTTTCATAACAGCAACA+AGG | + | tig0024203:4036-4055 | None:intergenic | 30.0% | |
| !! | TATGTTTTGGATACTAAAGC+AGG | + | tig0024203:4212-4231 | None:intergenic | 30.0% |
| ! | TGTTGGATGAATCTATGTTT+TGG | + | tig0024203:4225-4244 | None:intergenic | 30.0% |
| AACATAGATTCATCCAACAA+AGG | - | tig0024203:4226-4245 | Msa1415340:intron | 30.0% | |
| TCTTTGTATTAAGCCTTTGT+TGG | + | tig0024203:4242-4261 | None:intergenic | 30.0% | |
| !!! | CAATTTTTTGTTGTCCTAAG+CGG | - | tig0024203:4264-4283 | Msa1415340:intron | 30.0% |
| ! | CCACATATAAACACTTGTTA+AGG | + | tig0024203:4312-4331 | None:intergenic | 30.0% |
| CCTTAACAAGTGTTTATATG+TGG | - | tig0024203:4309-4328 | Msa1415340:intron | 30.0% | |
| TAACAAGTGTTTATATGTGG+GGG | - | tig0024203:4312-4331 | Msa1415340:intron | 30.0% | |
| CATTATCAGTAATGAAGGAA+GGG | + | tig0024203:4705-4724 | None:intergenic | 30.0% | |
| TCATTATCAGTAATGAAGGA+AGG | + | tig0024203:4706-4725 | None:intergenic | 30.0% | |
| CATGTCATTATCAGTAATGA+AGG | + | tig0024203:4710-4729 | None:intergenic | 30.0% | |
| AATGACAATATGATAGGAAC+TGG | + | tig0024203:4985-5004 | None:intergenic | 30.0% | |
| !! | GTAAGTATTGATGTCAAACT+TGG | + | tig0024203:5247-5266 | None:intergenic | 30.0% |
| CTTGTGATTATAATCTAGCA+TGG | + | tig0024203:5390-5409 | None:intergenic | 30.0% | |
| CAGACTATTGTAGAAGATTT+CGG | + | tig0024203:5452-5471 | None:intergenic | 30.0% | |
| ! | GTATTGGTATCTATTCGATT+TGG | - | tig0024203:5495-5514 | Msa1415340:intron | 30.0% |
| !!! | AAAATTTTGATGGTGTATGG+TGG | - | tig0024203:5582-5601 | Msa1415340:intron | 30.0% |
| TATGCAACGCCATATTTATA+GGG | + | tig0024203:5640-5659 | None:intergenic | 30.0% | |
| TTTGTAGGACAGCTAAATAT+AGG | + | tig0024203:5979-5998 | None:intergenic | 30.0% | |
| TATATTTAGCTGTCCTACAA+AGG | - | tig0024203:5978-5997 | Msa1415340:intron | 30.0% | |
| ! | ATGCTTTTATAACTCTCAGA+AGG | - | tig0024203:6038-6057 | Msa1415340:intron | 30.0% |
| ! | TGCTTTTATAACTCTCAGAA+GGG | - | tig0024203:6039-6058 | Msa1415340:intron | 30.0% |
| TCAAAGCGATCATAATTTGA+TGG | - | tig0024203:6132-6151 | Msa1415340:intron | 30.0% | |
| !!! | TTGTTTTTAAAATCAGCCTG+AGG | + | tig0024203:6814-6833 | None:intergenic | 30.0% |
| TTCAAAAAAGCAATCTGGTT+TGG | - | tig0024203:6872-6891 | Msa1415340:intron | 30.0% | |
| TGAAATCACACAATTACAAG+TGG | + | tig0024203:7181-7200 | None:intergenic | 30.0% | |
| ACTTGTAATTGTGTGATTTC+AGG | - | tig0024203:7180-7199 | Msa1415340:intron | 30.0% | |
| CTTGTAATTGTGTGATTTCA+GGG | - | tig0024203:7181-7200 | Msa1415340:intron | 30.0% | |
| AAACATAACTCACGTAAATC+TGG | + | tig0024203:7288-7307 | None:intergenic | 30.0% | |
| AGATTTACGTGAGTTATGTT+TGG | - | tig0024203:7287-7306 | Msa1415340:intron | 30.0% | |
| ATTGAAACAATTCAACAAGG+GGG | + | tig0024203:7318-7337 | None:intergenic | 30.0% | |
| ATCCATATACATTCATGAGT+TGG | - | tig0024203:7416-7435 | Msa1415340:intron | 30.0% | |
| !! | TGAAGTATTGGCTGATATTT+AGG | - | tig0024203:7510-7529 | Msa1415340:intron | 30.0% |
| ! | ATAATATTTTCAGCATTGCC+TGG | + | tig0024203:7818-7837 | None:intergenic | 30.0% |
| CAAATACTTGATCATCTTGA+GGG | - | tig0024203:8124-8143 | Msa1415340:intron | 30.0% | |
| ! | AGGTTAGACCATTTCTTTTA+AGG | - | tig0024203:8394-8413 | Msa1415340:CDS | 30.0% |
| ! | GTTTAGCTTACTTTACTTTC+TGG | - | tig0024203:8448-8467 | Msa1415340:intron | 30.0% |
| GTTGAACTGAATTTATCAGT+TGG | - | tig0024203:8521-8540 | Msa1415340:intron | 30.0% | |
| TGAACTGAATTTATCAGTTG+GGG | - | tig0024203:8523-8542 | Msa1415340:intron | 30.0% | |
| GGATTATATTGTCATTCGAA+AGG | - | tig0024203:8544-8563 | Msa1415340:intron | 30.0% | |
| AAAAATAGAAAAGAGGGAGA+GGG | + | tig0024203:8653-8672 | None:intergenic | 30.0% | |
| AAAAAATAGAAAAGAGGGAG+AGG | + | tig0024203:8654-8673 | None:intergenic | 30.0% | |
| CTTCTTTCAACATAACCAAA+TGG | + | tig0024203:8836-8855 | None:intergenic | 30.0% | |
| CATTTGGTTATGTTGAAAGA+AGG | - | tig0024203:8834-8853 | Msa1415340:intron | 30.0% | |
| CTTAATAACCTAAGAACACA+AGG | + | tig0024203:9110-9129 | None:intergenic | 30.0% | |
| TTACTGGAGGAATATATTCT+TGG | + | tig0024203:9150-9169 | None:intergenic | 30.0% | |
| CAATAGCACCATATAATTAC+TGG | + | tig0024203:9166-9185 | None:intergenic | 30.0% | |
| CAAAGAAACAAGACAAACAG+AGG | + | tig0024203:3725-3744 | None:intergenic | 35.0% | |
| TTCAAACTCGACTAGTAGAT+TGG | - | tig0024203:4139-4158 | Msa1415340:CDS | 35.0% | |
| ACTAAAGCAGGTCATATACA+AGG | + | tig0024203:4200-4219 | None:intergenic | 35.0% | |
| AATTATTAACACCACGGTAG+AGG | + | tig0024203:4479-4498 | None:intergenic | 35.0% | |
| ATATGGAGGTTCGGATAATA+TGG | - | tig0024203:4550-4569 | Msa1415340:intron | 35.0% | |
| ACACAGCAAAATTAGAGGAT+TGG | + | tig0024203:4666-4685 | None:intergenic | 35.0% | |
| GAGAAACACAGCAAAATTAG+AGG | + | tig0024203:4671-4690 | None:intergenic | 35.0% | |
| GTAGAAGGTTACATTGTTAC+TGG | - | tig0024203:4773-4792 | Msa1415340:intron | 35.0% | |
| ! | GGATCAAAGCAAGTTGAAAT+AGG | - | tig0024203:4794-4813 | Msa1415340:CDS | 35.0% |
| !! | AGGAACTGGTATTGATACTA+CGG | + | tig0024203:4971-4990 | None:intergenic | 35.0% |
| TCAGAAGATAGCAGGAAATA+TGG | - | tig0024203:5048-5067 | Msa1415340:CDS | 35.0% | |
| TCAGAAAATACTTGTACCAG+TGG | - | tig0024203:5072-5091 | Msa1415340:CDS | 35.0% | |
| ACACACATCATAGGGTTATT+TGG | - | tig0024203:5221-5240 | Msa1415340:intron | 35.0% | |
| TTTAACATTACAGTGGTCAG+TGG | + | tig0024203:5297-5316 | None:intergenic | 35.0% | |
| !! | TTATGTTCCTCTTTAGCTTG+TGG | - | tig0024203:5342-5361 | Msa1415340:CDS | 35.0% |
| AAATAAGCCACAAGCTAAAG+AGG | + | tig0024203:5352-5371 | None:intergenic | 35.0% | |
| CTATGCAACGCCATATTTAT+AGG | + | tig0024203:5641-5660 | None:intergenic | 35.0% | |
| CTATAAATATGGCGTTGCAT+AGG | - | tig0024203:5639-5658 | Msa1415340:intron | 35.0% | |
| !! | CCTACATTTTTGGGAAATAG+TGG | + | tig0024203:5895-5914 | None:intergenic | 35.0% |
| CCACTATTTCCCAAAAATGT+AGG | - | tig0024203:5892-5911 | Msa1415340:intron | 35.0% | |
| ! | GCTTTTATAACTCTCAGAAG+GGG | - | tig0024203:6040-6059 | Msa1415340:intron | 35.0% |
| TTGGTGTAACAATGCAAGTT+GGG | + | tig0024203:6111-6130 | None:intergenic | 35.0% | |
| ATTGGTGTAACAATGCAAGT+TGG | + | tig0024203:6112-6131 | None:intergenic | 35.0% | |
| !! | TGATGGAATTCAAAGCATTG+AGG | - | tig0024203:6149-6168 | Msa1415340:intron | 35.0% |
| ACACTAAAATTACACATGGC+CGG | - | tig0024203:6225-6244 | Msa1415340:intron | 35.0% | |
| !!! | TATCTGCAGATTGTTTTTGC+CGG | + | tig0024203:6247-6266 | None:intergenic | 35.0% |
| TGTATAGGCTGAAGATTATG+AGG | + | tig0024203:6281-6300 | None:intergenic | 35.0% | |
| TCATAATCTTCAGCCTATAC+AGG | - | tig0024203:6280-6299 | Msa1415340:intron | 35.0% | |
| CTATTATACTGCACCTGTAT+AGG | + | tig0024203:6296-6315 | None:intergenic | 35.0% | |
| AAAATTCAAAGCCTGTTCTC+TGG | - | tig0024203:6471-6490 | Msa1415340:intron | 35.0% | |
| AATAAACATGAACCCCCATT+TGG | + | tig0024203:6717-6736 | None:intergenic | 35.0% | |
| !!! | CCAGATTGCTTTTTTGAAAC+CGG | + | tig0024203:6870-6889 | None:intergenic | 35.0% |
| ! | CTTTTTGATACAGGTAAGGT+TGG | - | tig0024203:7068-7087 | Msa1415340:intron | 35.0% |
| ATGGCTCATGTATAGAACTA+AGG | + | tig0024203:7148-7167 | None:intergenic | 35.0% | |
| ! | TAGTTCTATACATGAGCCAT+CGG | - | tig0024203:7148-7167 | Msa1415340:intron | 35.0% |
| TAGTTATGTACATCCAACTC+AGG | + | tig0024203:7252-7271 | None:intergenic | 35.0% | |
| GTCAATATTTACTCACAGTC+AGG | + | tig0024203:7350-7369 | None:intergenic | 35.0% | |
| TGTGAGTAAATATTGACGCT+AGG | - | tig0024203:7353-7372 | Msa1415340:intron | 35.0% | |
| GACCAACTCATGAATGTATA+TGG | + | tig0024203:7421-7440 | None:intergenic | 35.0% | |
| !! | TCTGTCTTTGAAACCTATAC+AGG | - | tig0024203:7751-7770 | Msa1415340:intron | 35.0% |
| GAAACTTCAATAGCCTGTAT+AGG | + | tig0024203:7767-7786 | None:intergenic | 35.0% | |
| TATTGAAGTTTCTAAACGCC+AGG | - | tig0024203:7775-7794 | Msa1415340:CDS | 35.0% | |
| AAGTCAAACATGGCCATATT+GGG | - | tig0024203:7875-7894 | Msa1415340:CDS | 35.0% | |
| GGTATTACAGTTTCACCATA+TGG | - | tig0024203:7973-7992 | Msa1415340:intron | 35.0% | |
| !!! | GATTGCTATTTTTAAGTGGG+AGG | + | tig0024203:8051-8070 | None:intergenic | 35.0% |
| CCTCAAGATGATCAAGTATT+TGG | + | tig0024203:8126-8145 | None:intergenic | 35.0% | |
| CCAAATACTTGATCATCTTG+AGG | - | tig0024203:8123-8142 | Msa1415340:intron | 35.0% | |
| ACACCATTCACTTCTTCATA+TGG | + | tig0024203:8318-8337 | None:intergenic | 35.0% | |
| TATGCTTCTCAGGAACATAA+TGG | - | tig0024203:8339-8358 | Msa1415340:CDS | 35.0% | |
| TAATGGCATAACTGACAGTA+TGG | - | tig0024203:8356-8375 | Msa1415340:CDS | 35.0% | |
| AATGGCATAACTGACAGTAT+GGG | - | tig0024203:8357-8376 | Msa1415340:CDS | 35.0% | |
| GAAAGGTTTGCGATGATTTA+CGG | - | tig0024203:8561-8580 | Msa1415340:intron | 35.0% | |
| ! | TTTTGACAGGTGTCAAACAA+TGG | - | tig0024203:8770-8789 | Msa1415340:intron | 35.0% |
| !!! | AGTGTTTTGAAGTTTCCAGT+TGG | - | tig0024203:8886-8905 | Msa1415340:intron | 35.0% |
| ! | TTGTGAATGTGTTCGTGTTT+TGG | - | tig0024203:8925-8944 | Msa1415340:intron | 35.0% |
| TCATAACTCTTCCATTGCAT+TGG | - | tig0024203:9058-9077 | Msa1415340:exon | 35.0% | |
| TAGCACCATATAATTACTGG+AGG | + | tig0024203:9163-9182 | None:intergenic | 35.0% | |
| GGACGACTATCATCCAATAT+GGG | + | tig0024203:4291-4310 | None:intergenic | 40.0% | |
| AGGACGACTATCATCCAATA+TGG | + | tig0024203:4292-4311 | None:intergenic | 40.0% | |
| ATAACTCAACCCCACATAAC+CGG | + | tig0024203:4356-4375 | None:intergenic | 40.0% | |
| GGATAATATGGTTACTGACG+AGG | - | tig0024203:4562-4581 | Msa1415340:CDS | 40.0% | |
| ! | CAGTAATGAAGGAAGGGTAT+AGG | + | tig0024203:4699-4718 | None:intergenic | 40.0% |
| TATCAAAGGGATATTGTCCG+TGG | - | tig0024203:4749-4768 | Msa1415340:intron | 40.0% | |
| CAATGTAACCTTCTACTCCA+CGG | + | tig0024203:4769-4788 | None:intergenic | 40.0% | |
| TTCTTTCTCCATTTGTGCAC+GGG | + | tig0024203:5136-5155 | None:intergenic | 40.0% | |
| GTTCTTTCTCCATTTGTGCA+CGG | + | tig0024203:5137-5156 | None:intergenic | 40.0% | |
| CACAAATGGAGAAAGAACGT+GGG | - | tig0024203:5139-5158 | Msa1415340:CDS | 40.0% | |
| GGGAACTTACTAAAAGCTCT+TGG | - | tig0024203:5159-5178 | Msa1415340:intron | 40.0% | |
| TAATCTAGCATGGTGAAGCT+TGG | + | tig0024203:5380-5399 | None:intergenic | 40.0% | |
| !!! | TTTTGATGGTGTATGGTGGA+AGG | - | tig0024203:5586-5605 | Msa1415340:intron | 40.0% |
| ATTTCAAATGTCCGTAGTGC+TGG | + | tig0024203:5955-5974 | None:intergenic | 40.0% | |
| AAACAATCTGCAGATAGCCT+TGG | - | tig0024203:6251-6270 | Msa1415340:intron | 40.0% | |
| AACAATCTGCAGATAGCCTT+GGG | - | tig0024203:6252-6271 | Msa1415340:intron | 40.0% | |
| GAAGATTATGAGGTTTCCCA+AGG | + | tig0024203:6271-6290 | None:intergenic | 40.0% | |
| GCACATCCAAAACATTCTAG+TGG | - | tig0024203:6416-6435 | Msa1415340:intron | 40.0% | |
| ! | TCAGCACCACTAGAATGTTT+TGG | + | tig0024203:6425-6444 | None:intergenic | 40.0% |
| !! | TGCTGAGAAGATTGGTTTCA+AGG | - | tig0024203:6439-6458 | Msa1415340:intron | 40.0% |
| ATAAACATGAGCCAGAGAAC+AGG | + | tig0024203:6485-6504 | None:intergenic | 40.0% | |
| AAAACTTGGTATCCAGTCCA+AGG | - | tig0024203:6519-6538 | Msa1415340:intron | 40.0% | |
| GAGCAAGCTCTGTCTTTAAA+TGG | + | tig0024203:6595-6614 | None:intergenic | 40.0% | |
| CCGGTTTCAAAAAAGCAATC+TGG | - | tig0024203:6867-6886 | Msa1415340:intron | 40.0% | |
| AGGCAATCACAAAAATCCCA+CGG | + | tig0024203:6955-6974 | None:intergenic | 40.0% | |
| ! | GATTTTTGTGATTGCCTGAG+AGG | - | tig0024203:6958-6977 | Msa1415340:intron | 40.0% |
| TGGCTACCCAAACCTAAAAA+TGG | + | tig0024203:7005-7024 | None:intergenic | 40.0% | |
| ! | TGGGTACCCACATTTGAAAT+TGG | + | tig0024203:7038-7057 | None:intergenic | 40.0% |
| GGGATTTGACTATACTGCAT+TGG | - | tig0024203:7111-7130 | Msa1415340:intron | 40.0% | |
| TCTTGGATTTCTTCCTGAGT+TGG | - | tig0024203:7236-7255 | Msa1415340:intron | 40.0% | |
| TAAACGCCAGGCAAAAGTAA+GGG | - | tig0024203:7787-7806 | Msa1415340:CDS | 40.0% | |
| ! | ATATGGCCATGTTTGACTTC+AGG | + | tig0024203:7874-7893 | None:intergenic | 40.0% |
| GAAGTCAAACATGGCCATAT+TGG | - | tig0024203:7874-7893 | Msa1415340:CDS | 40.0% | |
| AGTCAAACATGGCCATATTG+GGG | - | tig0024203:7876-7895 | Msa1415340:CDS | 40.0% | |
| ATACCATAGCTATAAGACGC+TGG | + | tig0024203:7958-7977 | None:intergenic | 40.0% | |
| CTAAATACTGCAGCACCATA+TGG | + | tig0024203:7991-8010 | None:intergenic | 40.0% | |
| ! | TTGGAGCACTCTTTGATGAT+AGG | + | tig0024203:8107-8126 | None:intergenic | 40.0% |
| TATCTACACTAGGTGTAGGT+GGG | + | tig0024203:8275-8294 | None:intergenic | 40.0% | |
| TTATCTACACTAGGTGTAGG+TGG | + | tig0024203:8276-8295 | None:intergenic | 40.0% | |
| CTGTTATCTACACTAGGTGT+AGG | + | tig0024203:8279-8298 | None:intergenic | 40.0% | |
| TTCACTTCTTCATATGGTGG+AGG | + | tig0024203:8312-8331 | None:intergenic | 40.0% | |
| CCATTCACTTCTTCATATGG+TGG | + | tig0024203:8315-8334 | None:intergenic | 40.0% | |
| CCACCATATGAAGAAGTGAA+TGG | - | tig0024203:8312-8331 | Msa1415340:CDS | 40.0% | |
| ! | GACAGTATGGGTTACTTCTT+AGG | - | tig0024203:8369-8388 | Msa1415340:CDS | 40.0% |
| ! | TATGGGTTACTTCTTAGGAG+AGG | - | tig0024203:8374-8393 | Msa1415340:CDS | 40.0% |
| ACTTCAGACTCAGCATGATA+GGG | + | tig0024203:8503-8522 | None:intergenic | 40.0% | |
| AACTTCAGACTCAGCATGAT+AGG | + | tig0024203:8504-8523 | None:intergenic | 40.0% | |
| ACAGGTGTCAAACAATGGAT+GGG | - | tig0024203:8775-8794 | Msa1415340:intron | 40.0% | |
| !! | AAAGCAGGTTGGTTTCCATT+TGG | - | tig0024203:8818-8837 | Msa1415340:intron | 40.0% |
| TTATGTTGAAAGAAGGGACC+AGG | - | tig0024203:8841-8860 | Msa1415340:intron | 40.0% | |
| GAACACATTCACAATCCCTA+TGG | + | tig0024203:8919-8938 | None:intergenic | 40.0% | |
| TCTATCGATCGATAATCGCA+TGG | + | tig0024203:9023-9042 | None:intergenic | 40.0% | |
| TAACTCTTCCATTGCATTGG+AGG | - | tig0024203:9061-9080 | Msa1415340:exon | 40.0% | |
| TATGAACACCTCCAATGCAA+TGG | + | tig0024203:9072-9091 | None:intergenic | 40.0% | |
| GGTACAACTAGAAACCGTGT+TGG | - | tig0024203:3749-3768 | Msa1415340:three_prime_UTR | 45.0% | |
| ACAACTAGAAACCGTGTTGG+TGG | - | tig0024203:3752-3771 | Msa1415340:three_prime_UTR | 45.0% | |
| !! | CTTGGAGGCTTGTTTTCTGA+TGG | + | tig0024203:3888-3907 | None:intergenic | 45.0% |
| ! | TTTACTAGCTTCCTCTACCG+TGG | - | tig0024203:4465-4484 | Msa1415340:intron | 45.0% |
| TAGGCTGTGCTGAAACAGTT+TGG | - | tig0024203:4518-4537 | Msa1415340:intron | 45.0% | |
| AGGCTGTGCTGAAACAGTTT+GGG | - | tig0024203:4519-4538 | Msa1415340:intron | 45.0% | |
| CTTTACATATCCACACGTGC+AGG | - | tig0024203:4617-4636 | Msa1415340:CDS | 45.0% | |
| GATATTGTCCGTGGAGTAGA+AGG | - | tig0024203:4758-4777 | Msa1415340:intron | 45.0% | |
| CTTAGTACACGATGAACCTC+TGG | - | tig0024203:4875-4894 | Msa1415340:intron | 45.0% | |
| !! | CAAAGGTGTCAGAAGATAGC+AGG | - | tig0024203:5040-5059 | Msa1415340:CDS | 45.0% |
| !! | TCTTGATAACGTGCTACCAC+TGG | + | tig0024203:5091-5110 | None:intergenic | 45.0% |
| GCACAAATGGAGAAAGAACG+TGG | - | tig0024203:5138-5157 | Msa1415340:CDS | 45.0% | |
| ACTAAAAGCTCTTGGCACAC+AGG | - | tig0024203:5167-5186 | Msa1415340:intron | 45.0% | |
| GCAACGCCATATTTATAGGG+TGG | + | tig0024203:5637-5656 | None:intergenic | 45.0% | |
| TCAAAAACCACACCATGCAC+AGG | + | tig0024203:5665-5684 | None:intergenic | 45.0% | |
| ! | TGGCCTTTTTGTCAAAGTGC+GGG | + | tig0024203:5935-5954 | None:intergenic | 45.0% |
| !! | CTGGCCTTTTTGTCAAAGTG+CGG | + | tig0024203:5936-5955 | None:intergenic | 45.0% |
| TGACAAAAAGGCCAGCACTA+CGG | - | tig0024203:5941-5960 | Msa1415340:intron | 45.0% | |
| ! | TCCTTTAGGGATAGAGTGAC+AGG | + | tig0024203:6086-6105 | None:intergenic | 45.0% |
| ! | TGCAAGTTGGGACTCCTTTA+GGG | + | tig0024203:6099-6118 | None:intergenic | 45.0% |
| ! | ATGCAAGTTGGGACTCCTTT+AGG | + | tig0024203:6100-6119 | None:intergenic | 45.0% |
| GCATTGAGGTTATCAAAGCC+TGG | - | tig0024203:6163-6182 | Msa1415340:intron | 45.0% | |
| GAGGTTATCAAAGCCTGGAA+CGG | - | tig0024203:6168-6187 | Msa1415340:intron | 45.0% | |
| ! | TCTAGTGGTGCTGAGAAGAT+TGG | - | tig0024203:6431-6450 | Msa1415340:intron | 45.0% |
| !! | ATTGGTCCCCTTGGATTAGT+CGG | + | tig0024203:6546-6565 | None:intergenic | 45.0% |
| ! | AAGACAGAGCTTGCTCTGTA+TGG | - | tig0024203:6599-6618 | Msa1415340:intron | 45.0% |
| !! | ATGGACTAGCCCACCTAAAT+TGG | - | tig0024203:6618-6637 | Msa1415340:intron | 45.0% |
| ! | ATTCCCTCTGGTGCCAATTT+AGG | + | tig0024203:6634-6653 | None:intergenic | 45.0% |
| TAGTTAACCACACCATGCAG+CGG | - | tig0024203:6929-6948 | Msa1415340:intron | 45.0% | |
| GATTCTTGTCTGAACCTCTC+AGG | + | tig0024203:6975-6994 | None:intergenic | 45.0% | |
| ATGCCAACATATCCTGTGCA+TGG | - | tig0024203:7462-7481 | Msa1415340:intron | 45.0% | |
| CAACCATGCACAGGATATGT+TGG | + | tig0024203:7468-7487 | None:intergenic | 45.0% | |
| GAAAACAAGCAACCATGCAC+AGG | + | tig0024203:7477-7496 | None:intergenic | 45.0% | |
| CCCATCACCATTGCTCTTAA+GGG | + | tig0024203:7544-7563 | None:intergenic | 45.0% | |
| CCCTTAAGAGCAATGGTGAT+GGG | - | tig0024203:7541-7560 | Msa1415340:intron | 45.0% | |
| ACCCATCACCATTGCTCTTA+AGG | + | tig0024203:7545-7564 | None:intergenic | 45.0% | |
| ACGTTATGACAGAATGCGAC+AGG | - | tig0024203:7597-7616 | Msa1415340:intron | 45.0% | |
| CTAAACGCCAGGCAAAAGTA+AGG | - | tig0024203:7786-7805 | Msa1415340:CDS | 45.0% | |
| !! | GTGTTTCCCTTACTTTTGCC+TGG | + | tig0024203:7796-7815 | None:intergenic | 45.0% |
| GCAAAAGTAAGGGAAACACC+AGG | - | tig0024203:7797-7816 | Msa1415340:CDS | 45.0% | |
| ! | CCATGTTTGACTTCAGGTCT+TGG | + | tig0024203:7868-7887 | None:intergenic | 45.0% |
| CCAAGACCTGAAGTCAAACA+TGG | - | tig0024203:7865-7884 | Msa1415340:CDS | 45.0% | |
| AAACATGGCCATATTGGGGA+AGG | - | tig0024203:7880-7899 | Msa1415340:CDS | 45.0% | |
| ACTCCAGCGTCTTATAGCTA+TGG | - | tig0024203:7952-7971 | Msa1415340:intron | 45.0% | |
| ACTTGATCATCTTGAGGGAG+AGG | - | tig0024203:8129-8148 | Msa1415340:intron | 45.0% | |
| ATCTACACTAGGTGTAGGTG+GGG | + | tig0024203:8274-8293 | None:intergenic | 45.0% | |
| GGCATGCTGTTATCTACACT+AGG | + | tig0024203:8285-8304 | None:intergenic | 45.0% | |
| ! | ACTTCTTCATATGGTGGAGG+TGG | + | tig0024203:8309-8328 | None:intergenic | 45.0% |
| GAATGGTGTCTATGCTTCTC+AGG | - | tig0024203:8329-8348 | Msa1415340:CDS | 45.0% | |
| ! | GGTGTGCATTTTACTCATGC+AGG | - | tig0024203:8469-8488 | Msa1415340:intron | 45.0% |
| GACAGGTGTCAAACAATGGA+TGG | - | tig0024203:8774-8793 | Msa1415340:intron | 45.0% | |
| !! | TCAAACAATGGATGGGCTGA+GGG | - | tig0024203:8782-8801 | Msa1415340:intron | 45.0% |
| AATGCAAAGGGAAAGCAGGT+TGG | - | tig0024203:8807-8826 | Msa1415340:intron | 45.0% | |
| ! | TCCAGTTGGTTTCTTGCCAT+AGG | - | tig0024203:8900-8919 | Msa1415340:intron | 45.0% |
| ! | CCAGTTGGTTTCTTGCCATA+GGG | - | tig0024203:8901-8920 | Msa1415340:intron | 45.0% |
| CTTTCGCACCTTGTGTTCTT+AGG | - | tig0024203:9099-9118 | Msa1415340:five_prime_UTR | 45.0% | |
| ! | ACTAGAAACCGTGTTGGTGG+TGG | - | tig0024203:3755-3774 | Msa1415340:three_prime_UTR | 50.0% |
| ! | GACTTGTTCTCTGAGCTTGG+AGG | + | tig0024203:3903-3922 | None:intergenic | 50.0% |
| ! | AGCGACTTGTTCTCTGAGCT+TGG | + | tig0024203:3906-3925 | None:intergenic | 50.0% |
| AGAGAGAGAGAGAGAGAGAG+GGG | + | tig0024203:3949-3968 | None:intergenic | 50.0% | |
| GAGAGAGAGAGAGAGAGAGA+GGG | + | tig0024203:3950-3969 | None:intergenic | 50.0% | |
| TGAGAGAGAGAGAGAGAGAG+AGG | + | tig0024203:3951-3970 | None:intergenic | 50.0% | |
| TGTCCTAAGCGGTCCCATAT+TGG | - | tig0024203:4275-4294 | Msa1415340:intron | 50.0% | |
| CATCCAATATGGGACCGCTT+AGG | + | tig0024203:4281-4300 | None:intergenic | 50.0% | |
| GGCTGTGCTGAAACAGTTTG+GGG | - | tig0024203:4520-4539 | Msa1415340:intron | 50.0% | |
| ! | TGCTGAAACAGTTTGGGGCT+GGG | - | tig0024203:4525-4544 | Msa1415340:intron | 50.0% |
| CATATCCACACGTGCAGGAA+AGG | - | tig0024203:4622-4641 | Msa1415340:CDS | 50.0% | |
| AGTAACCTTTCCTGCACGTG+TGG | + | tig0024203:4630-4649 | None:intergenic | 50.0% | |
| GATGAACCTCTGGCAAGCTA+GGG | - | tig0024203:4885-4904 | Msa1415340:intron | 50.0% | |
| GTGTGCGGGCGCATATATTT+GGG | + | tig0024203:5201-5220 | None:intergenic | 50.0% | |
| TGTGTGCGGGCGCATATATT+TGG | + | tig0024203:5202-5221 | None:intergenic | 50.0% | |
| CCTATGATGTGTGTGTGTGC+GGG | + | tig0024203:5215-5234 | None:intergenic | 50.0% | |
| CCCTATGATGTGTGTGTGTG+CGG | + | tig0024203:5216-5235 | None:intergenic | 50.0% | |
| CCGCACACACACACATCATA+GGG | - | tig0024203:5213-5232 | Msa1415340:intron | 50.0% | |
| ! | TGATGGTGTATGGTGGAAGG+TGG | - | tig0024203:5589-5608 | Msa1415340:intron | 50.0% |
| GTCCCCGCACTTTGACAAAA+AGG | - | tig0024203:5929-5948 | Msa1415340:intron | 50.0% | |
| ! | GGCCTTTTTGTCAAAGTGCG+GGG | + | tig0024203:5934-5953 | None:intergenic | 50.0% |
| GCCTGTCACTCTATCCCTAA+AGG | - | tig0024203:6082-6101 | Msa1415340:intron | 50.0% | |
| CTTCTGTCACTAACCGTTCC+AGG | + | tig0024203:6184-6203 | None:intergenic | 50.0% | |
| TCCAAGGACCGACTAATCCA+AGG | - | tig0024203:6535-6554 | Msa1415340:intron | 50.0% | |
| CCAAGGACCGACTAATCCAA+GGG | - | tig0024203:6536-6555 | Msa1415340:intron | 50.0% | |
| CAAGGACCGACTAATCCAAG+GGG | - | tig0024203:6537-6556 | Msa1415340:intron | 50.0% | |
| ! | CCTCTGGTGCCAATTTAGGT+GGG | + | tig0024203:6630-6649 | None:intergenic | 50.0% |
| CCACCTAAATTGGCACCAGA+GGG | - | tig0024203:6628-6647 | Msa1415340:intron | 50.0% | |
| ATCGAACCAGAGACCTTGAG+AGG | - | tig0024203:6652-6671 | Msa1415340:intron | 50.0% | |
| TTTGCTCCTCTCAAGGTCTC+TGG | + | tig0024203:6661-6680 | None:intergenic | 50.0% | |
| ! | CTTGGAGTTTGCTCCTCTCA+AGG | + | tig0024203:6668-6687 | None:intergenic | 50.0% |
| !! | TAGTGGTTGGCTTGGGATCT+TGG | + | tig0024203:6686-6705 | None:intergenic | 50.0% |
| AAGATCCCAAGCCAACCACT+AGG | - | tig0024203:6685-6704 | Msa1415340:intron | 50.0% | |
| ! | TTTGGAGTTGGCCTAGTGGT+TGG | + | tig0024203:6699-6718 | None:intergenic | 50.0% |
| ACCACTAGGCCAACTCCAAA+TGG | - | tig0024203:6699-6718 | Msa1415340:intron | 50.0% | |
| CCACTAGGCCAACTCCAAAT+GGG | - | tig0024203:6700-6719 | Msa1415340:intron | 50.0% | |
| CACTAGGCCAACTCCAAATG+GGG | - | tig0024203:6701-6720 | Msa1415340:intron | 50.0% | |
| ACTAGGCCAACTCCAAATGG+GGG | - | tig0024203:6702-6721 | Msa1415340:intron | 50.0% | |
| ! | CATGAACCCCCATTTGGAGT+TGG | + | tig0024203:6711-6730 | None:intergenic | 50.0% |
| TACAAGTGGTGACTGTCCGA+TGG | + | tig0024203:7167-7186 | None:intergenic | 50.0% | |
| TGCAGAGCCCTTAAGAGCAA+TGG | - | tig0024203:7534-7553 | Msa1415340:intron | 50.0% | |
| GCCCTTAAGAGCAATGGTGA+TGG | - | tig0024203:7540-7559 | Msa1415340:intron | 50.0% | |
| !! | AATGGTGATGGGTGCTCCTT+TGG | - | tig0024203:7552-7571 | Msa1415340:intron | 50.0% |
| AGATGCCTAGCATCCTCCAA+AGG | + | tig0024203:7571-7590 | None:intergenic | 50.0% | |
| AGCTGCTTCCTTCCCCAATA+TGG | + | tig0024203:7891-7910 | None:intergenic | 50.0% | |
| ATCAGAACGGCAGCGTATTG+AGG | - | tig0024203:8248-8267 | Msa1415340:intron | 50.0% | |
| ! | TCTTCATATGGTGGAGGTGG+TGG | + | tig0024203:8306-8325 | None:intergenic | 50.0% |
| !! | GTCAAACAATGGATGGGCTG+AGG | - | tig0024203:8781-8800 | Msa1415340:intron | 50.0% |
| GGTGAATGCAAAGGGAAAGC+AGG | - | tig0024203:8803-8822 | Msa1415340:intron | 50.0% | |
| CCCTATGGCAAGAAACCAAC+TGG | + | tig0024203:8904-8923 | None:intergenic | 50.0% | |
| CCAAGACTCCACCACCAACA+CGG | + | tig0024203:3766-3785 | None:intergenic | 55.0% | |
| ACAAGTCGCTCGCCAACAAC+AGG | - | tig0024203:3916-3935 | Msa1415340:three_prime_UTR | 55.0% | |
| AGGGGAAGGGAACCTGTTGT+TGG | + | tig0024203:3931-3950 | None:intergenic | 55.0% | |
| GAGAGAGAGAGAGAGGGGAA+GGG | + | tig0024203:3944-3963 | None:intergenic | 55.0% | |
| AGAGAGAGAGAGAGAGGGGA+AGG | + | tig0024203:3945-3964 | None:intergenic | 55.0% | |
| ACCTCACAGGCCGGTTATGT+GGG | - | tig0024203:4343-4362 | Msa1415340:intron | 55.0% | |
| ! | GTGCTGAAACAGTTTGGGGC+TGG | - | tig0024203:4524-4543 | Msa1415340:intron | 55.0% |
| ! | GCTGAAACAGTTTGGGGCTG+GGG | - | tig0024203:4526-4545 | Msa1415340:intron | 55.0% |
| ! | CTGAAACAGTTTGGGGCTGG+GGG | - | tig0024203:4527-4546 | Msa1415340:intron | 55.0% |
| CGATGAACCTCTGGCAAGCT+AGG | - | tig0024203:4884-4903 | Msa1415340:intron | 55.0% | |
| ! | TACACTCCCTAGCTTGCCAG+AGG | + | tig0024203:4894-4913 | None:intergenic | 55.0% |
| TGCACATGCCCGTGCACAAA+TGG | - | tig0024203:5125-5144 | Msa1415340:CDS | 55.0% | |
| CCCGCACACACACACATCAT+AGG | - | tig0024203:5212-5231 | Msa1415340:intron | 55.0% | |
| !! | GGATTAGTCGGTCCTTGGAC+TGG | + | tig0024203:6534-6553 | None:intergenic | 55.0% |
| !! | CCCTTGGATTAGTCGGTCCT+TGG | + | tig0024203:6539-6558 | None:intergenic | 55.0% |
| CCCACCTAAATTGGCACCAG+AGG | - | tig0024203:6627-6646 | Msa1415340:intron | 55.0% | |
| ! | CCCTCTGGTGCCAATTTAGG+TGG | + | tig0024203:6631-6650 | None:intergenic | 55.0% |
| ! | GTCTCTGGTTCGATTCCCTC+TGG | + | tig0024203:6646-6665 | None:intergenic | 55.0% |
| !! | GTTGGCCTAGTGGTTGGCTT+GGG | + | tig0024203:6693-6712 | None:intergenic | 55.0% |
| ! | AGTTGGCCTAGTGGTTGGCT+TGG | + | tig0024203:6694-6713 | None:intergenic | 55.0% |
| ! | CCCATTTGGAGTTGGCCTAG+TGG | + | tig0024203:6703-6722 | None:intergenic | 55.0% |
| ! | GTGCTCCTTTGGAGGATGCT+AGG | - | tig0024203:7563-7582 | Msa1415340:intron | 55.0% |
| AGCTGCAGCAATGACAGCTG+TGG | - | tig0024203:7907-7926 | Msa1415340:intron | 55.0% | |
| TGGGCTGAGGGTGAATGCAA+AGG | - | tig0024203:8794-8813 | Msa1415340:intron | 55.0% | |
| GGGCTGAGGGTGAATGCAAA+GGG | - | tig0024203:8795-8814 | Msa1415340:intron | 55.0% | |
| !! | CCGTGTTGGTGGTGGAGTCT+TGG | - | tig0024203:3763-3782 | Msa1415340:three_prime_UTR | 60.0% |
| CATAACCGGCCTGTGAGGTG+AGG | + | tig0024203:4342-4361 | None:intergenic | 60.0% | |
| CACCTCACAGGCCGGTTATG+TGG | - | tig0024203:4342-4361 | Msa1415340:intron | 60.0% | |
| CCTCACAGGCCGGTTATGTG+GGG | - | tig0024203:4344-4363 | Msa1415340:intron | 60.0% | |
| ! | CAGTTTGGGGCTGGGGGATA+TGG | - | tig0024203:4533-4552 | Msa1415340:intron | 60.0% |
| ! | TTTGGGGCTGGGGGATATGG+AGG | - | tig0024203:4536-4555 | Msa1415340:intron | 60.0% |
| GGCTGGGGGATATGGAGGTT+CGG | - | tig0024203:4541-4560 | Msa1415340:intron | 60.0% | |
| GCGTTGCATAGGCCTGTGCA+TGG | - | tig0024203:5650-5669 | Msa1415340:intron | 60.0% | |
| GCATAGGCCTGTGCATGGTG+TGG | - | tig0024203:5655-5674 | Msa1415340:intron | 60.0% | |
| CCAATCCCATCGCCCACTTG+CGG | - | tig0024203:6561-6580 | Msa1415340:intron | 60.0% | |
| AAAATCCCACGGCCGCTGCA+TGG | + | tig0024203:6944-6963 | None:intergenic | 60.0% | |
| !! | GGTGATGGGTGCTCCTTTGG+AGG | - | tig0024203:7555-7574 | Msa1415340:intron | 60.0% |
| ! | CTGTGGAAGCACAGCAGCAG+AGG | - | tig0024203:7924-7943 | Msa1415340:intron | 60.0% |
| GGACCAGGTCCTTGCAAGCA+AGG | - | tig0024203:8856-8875 | Msa1415340:intron | 60.0% | |
| CCACCTTGCTTGCAAGGACC+TGG | + | tig0024203:8862-8881 | None:intergenic | 60.0% | |
| CCAGGTCCTTGCAAGCAAGG+TGG | - | tig0024203:8859-8878 | Msa1415340:intron | 60.0% | |
| GGTCCTTGCAAGCAAGGTGG+CGG | - | tig0024203:8862-8881 | Msa1415340:intron | 60.0% | |
| CTTCCGCCACCTTGCTTGCA+AGG | + | tig0024203:8868-8887 | None:intergenic | 60.0% | |
| GCAGTCCTCACCTCACAGGC+CGG | - | tig0024203:4334-4353 | Msa1415340:intron | 65.0% | |
| CCCCACATAACCGGCCTGTG+AGG | + | tig0024203:4347-4366 | None:intergenic | 65.0% | |
| !! | GGCGATGGGATTGGTCCCCT+TGG | + | tig0024203:6555-6574 | None:intergenic | 65.0% |
| CCGCAAGTGGGCGATGGGAT+TGG | + | tig0024203:6564-6583 | None:intergenic | 65.0% | |
| ATGGAGCCCCTGCCGCAAGT+GGG | + | tig0024203:6576-6595 | None:intergenic | 65.0% | |
| AATGGAGCCCCTGCCGCAAG+TGG | + | tig0024203:6577-6596 | None:intergenic | 65.0% | |
| GCGACAGGATGCTGAAGCCC+AGG | - | tig0024203:7612-7631 | Msa1415340:intron | 65.0% | |
| GGGGGCAGTCCTCACCTCAC+AGG | - | tig0024203:4330-4349 | Msa1415340:intron | 70.0% | |
| TCCCATCGCCCACTTGCGGC+AGG | - | tig0024203:6565-6584 | Msa1415340:intron | 70.0% | |
| CCCTGCCGCAAGTGGGCGAT+GGG | + | tig0024203:6569-6588 | None:intergenic | 70.0% | |
| CCCATCGCCCACTTGCGGCA+GGG | - | tig0024203:6566-6585 | Msa1415340:intron | 70.0% | |
| CCATCGCCCACTTGCGGCAG+GGG | - | tig0024203:6567-6586 | Msa1415340:intron | 70.0% | |
| ACCACACCATGCAGCGGCCG+TGG | - | tig0024203:6935-6954 | Msa1415340:intron | 70.0% | |
| CCACACCATGCAGCGGCCGT+GGG | - | tig0024203:6936-6955 | Msa1415340:intron | 70.0% | |
| CCCCTGCCGCAAGTGGGCGA+TGG | + | tig0024203:6570-6589 | None:intergenic | 75.0% | |
| CCCACGGCCGCTGCATGGTG+TGG | + | tig0024203:6939-6958 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0024203 | gene | 3709 | 9240 | 3709 | ID=Msa1415340;Name=Msa1415340 |
| tig0024203 | mRNA | 3709 | 9240 | 3709 | ID=Msa1415340-mRNA-1;Parent=Msa1415340;Name=Msa1415340-mRNA-1;_AED=0.20;_eAED=0.20;_QI=169|0.63|0.75|1|0.90|1|12|345|379 |
| tig0024203 | exon | 3709 | 4170 | 3709 | ID=Msa1415340-mRNA-1:exon:22381;Parent=Msa1415340-mRNA-1 |
| tig0024203 | exon | 4384 | 4458 | 4384 | ID=Msa1415340-mRNA-1:exon:22380;Parent=Msa1415340-mRNA-1 |
| tig0024203 | exon | 4554 | 4706 | 4554 | ID=Msa1415340-mRNA-1:exon:22379;Parent=Msa1415340-mRNA-1 |
| tig0024203 | exon | 4790 | 4861 | 4790 | ID=Msa1415340-mRNA-1:exon:22378;Parent=Msa1415340-mRNA-1 |
| tig0024203 | exon | 4976 | 5176 | 4976 | ID=Msa1415340-mRNA-1:exon:22377;Parent=Msa1415340-mRNA-1 |
| tig0024203 | exon | 5316 | 5417 | 5316 | ID=Msa1415340-mRNA-1:exon:22376;Parent=Msa1415340-mRNA-1 |
| tig0024203 | exon | 5655 | 5660 | 5655 | ID=Msa1415340-mRNA-1:exon:22375;Parent=Msa1415340-mRNA-1 |
| tig0024203 | exon | 5860 | 5868 | 5860 | ID=Msa1415340-mRNA-1:exon:22374;Parent=Msa1415340-mRNA-1 |
| tig0024203 | exon | 7761 | 7912 | 7761 | ID=Msa1415340-mRNA-1:exon:22373;Parent=Msa1415340-mRNA-1 |
| tig0024203 | exon | 8134 | 8203 | 8134 | ID=Msa1415340-mRNA-1:exon:22372;Parent=Msa1415340-mRNA-1 |
| tig0024203 | exon | 8306 | 8428 | 8306 | ID=Msa1415340-mRNA-1:exon:22371;Parent=Msa1415340-mRNA-1 |
| tig0024203 | exon | 9012 | 9240 | 9012 | ID=Msa1415340-mRNA-1:exon:22370;Parent=Msa1415340-mRNA-1 |
| tig0024203 | five_prime_UTR | 9072 | 9240 | 9072 | ID=Msa1415340-mRNA-1:five_prime_utr;Parent=Msa1415340-mRNA-1 |
| tig0024203 | CDS | 9012 | 9071 | 9012 | ID=Msa1415340-mRNA-1:cds;Parent=Msa1415340-mRNA-1 |
| tig0024203 | CDS | 8306 | 8428 | 8306 | ID=Msa1415340-mRNA-1:cds;Parent=Msa1415340-mRNA-1 |
| tig0024203 | CDS | 8134 | 8203 | 8134 | ID=Msa1415340-mRNA-1:cds;Parent=Msa1415340-mRNA-1 |
| tig0024203 | CDS | 7761 | 7912 | 7761 | ID=Msa1415340-mRNA-1:cds;Parent=Msa1415340-mRNA-1 |
| tig0024203 | CDS | 5860 | 5868 | 5860 | ID=Msa1415340-mRNA-1:cds;Parent=Msa1415340-mRNA-1 |
| tig0024203 | CDS | 5655 | 5660 | 5655 | ID=Msa1415340-mRNA-1:cds;Parent=Msa1415340-mRNA-1 |
| tig0024203 | CDS | 5316 | 5417 | 5316 | ID=Msa1415340-mRNA-1:cds;Parent=Msa1415340-mRNA-1 |
| tig0024203 | CDS | 4976 | 5176 | 4976 | ID=Msa1415340-mRNA-1:cds;Parent=Msa1415340-mRNA-1 |
| tig0024203 | CDS | 4790 | 4861 | 4790 | ID=Msa1415340-mRNA-1:cds;Parent=Msa1415340-mRNA-1 |
| tig0024203 | CDS | 4554 | 4706 | 4554 | ID=Msa1415340-mRNA-1:cds;Parent=Msa1415340-mRNA-1 |
| tig0024203 | CDS | 4384 | 4458 | 4384 | ID=Msa1415340-mRNA-1:cds;Parent=Msa1415340-mRNA-1 |
| tig0024203 | CDS | 4054 | 4170 | 4054 | ID=Msa1415340-mRNA-1:cds;Parent=Msa1415340-mRNA-1 |
| tig0024203 | three_prime_UTR | 3709 | 4053 | 3709 | ID=Msa1415340-mRNA-1:three_prime_utr;Parent=Msa1415340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
