AlfalfaGEDB | Msa0475930

M. sativa cultivar zhongmu-4 / Msa0475930

KEGG: K11247
GO: GO:0000278 GO:0000280 GO:0000281 GO:0000910 GO:0000911 GO:0000919 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0006996 GO:0007049 GO:0008150 GO:0009504 GO:0009832 GO:0009920 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0022402 GO:0022607 GO:0031410 GO:0031982 GO:0032506 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0048285 GO:0051179 GO:0051234 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0072583 GO:0097708 GO:0098657 GO:0140014 GO:1902410 GO:1903047
PFAM: PF14604.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0475930	XP_003603992.1	83.372	433	10	3	1	433	1	371	0.0	709

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0475930	sp\|Q8VWF1\|SH3P2_ARATH	65.820	433	83	4	1	433	1	368	0.0	558

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0475930	G7J7R7	83.372	433	10	3	1	433	1	371	0.0	709

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0032470	Msa0475930	0.821587	3.730763e-53	-8.615850e-47
Msa0042550	Msa0475930	0.852976	3.241200e-61	-8.615850e-47
Msa0043500	Msa0475930	0.817808	2.720961e-52	-8.615850e-47
Msa0043650	Msa0475930	0.816218	6.195024e-52	-8.615850e-47
Msa0045550	Msa0475930	0.836043	1.179355e-56	-8.615850e-47
Msa0052860	Msa0475930	0.803121	4.055391e-49	-8.615850e-47
Msa0055070	Msa0475930	0.802141	6.459562e-49	-8.615850e-47
Msa0077030	Msa0475930	0.824084	9.775212e-54	-8.615850e-47
Msa0124550	Msa0475930	0.801445	8.972772e-49	-8.615850e-47
Msa0138020	Msa0475930	0.825773	3.904198e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0475930	MtrunA17_Chr3g0145091	83.372	433	10	3	1	433	1	371	0.0	709
Msa0475930	MtrunA17_Chr4g0035851	76.322	435	38	6	1	433	1	372	0.0	596
Msa0475930	MtrunA17_Chr8g0380121	44.009	434	156	13	1	433	1	348	9.71e-101	304
Msa0475930	MtrunA17_Chr5g0408971	42.334	437	175	11	1	431	1	366	9.39e-99	300

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0475930	AT4G34660.1	65.820	433	83	4	1	433	1	368	0.0	558
Msa0475930	AT4G34660.2	62.587	433	74	4	1	433	1	345	0.0	530
Msa0475930	AT4G34660.3	56.582	433	72	6	1	433	1	317	9.70e-155	441
Msa0475930	AT4G18060.1	45.392	434	153	11	1	433	1	351	5.26e-113	336
Msa0475930	AT1G31440.1	37.705	305	119	5	195	431	132	433	8.78e-59	199
Msa0475930	AT1G31440.1	55.396	139	58	2	1	139	1	135	1.79e-36	139
Msa0475930	AT4G39020.1	68.235	85	27	0	349	433	85	169	5.08e-37	133

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Find 154 sgRNAs with CRISPR-Local

Find 412 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATGGCCATATTGGGGA+AGG	0.604010	3_3:+79636390	Msa0475930:CDS
AAAGAAACAAGACAAACAGA+GGG	0.676607	3_3:-79632209	None:intergenic
AAAGCAGGTTGGTTTCCATT+TGG	0.437998	3_3:+79637328	Msa0475930:CDS
AAATTATGATCGCTTTGAAT+TGG	0.370108	3_3:-79634636	None:intergenic
AACTTCAGACTCAGCATGAT+AGG	0.393217	3_3:-79637011	None:intergenic
AAGTCAAACATGGCCATATT+GGG	0.328488	3_3:+79636385	Msa0475930:CDS
AATGATAGATGATATCAGAA+CGG	0.667024	3_3:+79636745	Msa0475930:intron
AATGCAAAGGGAAAGCAGGT+TGG	0.608458	3_3:+79637317	Msa0475930:CDS
AATGGCATAACTGACAGTAT+GGG	0.640455	3_3:+79636867	Msa0475930:CDS
AATGGTGATGGGTGCTCCTT+TGG	0.360393	3_3:+79636062	Msa0475930:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAAACAAGACAAACAGA+GGG	-	chr3_3:79632212-79632231	None:intergenic	30.0%
TTCCATTCAATTCAAAAGAG+AGG	-	chr3_3:79632342-79632361	None:intergenic	30.0%
AATCGAATTGAAAGCGAAAT+AGG	-	chr3_3:79632450-79632469	None:intergenic	30.0%
ATTGTTTCATAACAGCAACA+AGG	-	chr3_3:79632506-79632525	None:intergenic	30.0%
AACATAGATTCATCCAACAA+AGG	+	chr3_3:79632696-79632715	Msa0475930:intron	30.0%
TCTTTGTATTAAGCCTTTGT+TGG	-	chr3_3:79632712-79632731	None:intergenic	30.0%
CATTATCAGTAATGAAGGAA+GGG	-	chr3_3:79633117-79633136	None:intergenic	30.0%
TCATTATCAGTAATGAAGGA+AGG	-	chr3_3:79633118-79633137	None:intergenic	30.0%
CATGTCATTATCAGTAATGA+AGG	-	chr3_3:79633122-79633141	None:intergenic	30.0%
AATGACAATATGATAGGAAC+TGG	-	chr3_3:79633397-79633416	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	79632197	79637750	79632197	ID=Msa0475930;Name=Msa0475930
chr3_3	mRNA	79632197	79637750	79632197	ID=Msa0475930-mRNA-1;Parent=Msa0475930;Name=Msa0475930-mRNA-1;_AED=0.25;_eAED=0.25;_QI=159\|0.7\|0.72\|0.90\|0.9\|0.90\|11\|345\|433
chr3_3	exon	79632197	79632415	79632197	ID=Msa0475930-mRNA-1:exon:21592;Parent=Msa0475930-mRNA-1
chr3_3	exon	79632933	79633055	79632933	ID=Msa0475930-mRNA-1:exon:21593;Parent=Msa0475930-mRNA-1
chr3_3	exon	79633158	79633227	79633158	ID=Msa0475930-mRNA-1:exon:21594;Parent=Msa0475930-mRNA-1
chr3_3	exon	79633449	79633644	79633449	ID=Msa0475930-mRNA-1:exon:21595;Parent=Msa0475930-mRNA-1
chr3_3	exon	79634566	79634698	79634566	ID=Msa0475930-mRNA-1:exon:21596;Parent=Msa0475930-mRNA-1
chr3_3	exon	79636042	79636143	79636042	ID=Msa0475930-mRNA-1:exon:21597;Parent=Msa0475930-mRNA-1
chr3_3	exon	79636283	79636483	79636283	ID=Msa0475930-mRNA-1:exon:21598;Parent=Msa0475930-mRNA-1
chr3_3	exon	79636598	79636669	79636598	ID=Msa0475930-mRNA-1:exon:21599;Parent=Msa0475930-mRNA-1
chr3_3	exon	79636753	79636905	79636753	ID=Msa0475930-mRNA-1:exon:21600;Parent=Msa0475930-mRNA-1
chr3_3	exon	79637001	79637075	79637001	ID=Msa0475930-mRNA-1:exon:21601;Parent=Msa0475930-mRNA-1
chr3_3	exon	79637289	79637750	79637289	ID=Msa0475930-mRNA-1:exon:21602;Parent=Msa0475930-mRNA-1
chr3_3	five_prime_UTR	79632197	79632355	79632197	ID=Msa0475930-mRNA-1:five_prime_utr;Parent=Msa0475930-mRNA-1
chr3_3	CDS	79632356	79632415	79632356	ID=Msa0475930-mRNA-1:cds;Parent=Msa0475930-mRNA-1
chr3_3	CDS	79632933	79633055	79632933	ID=Msa0475930-mRNA-1:cds;Parent=Msa0475930-mRNA-1
chr3_3	CDS	79633158	79633227	79633158	ID=Msa0475930-mRNA-1:cds;Parent=Msa0475930-mRNA-1
chr3_3	CDS	79633449	79633644	79633449	ID=Msa0475930-mRNA-1:cds;Parent=Msa0475930-mRNA-1
chr3_3	CDS	79634566	79634698	79634566	ID=Msa0475930-mRNA-1:cds;Parent=Msa0475930-mRNA-1
chr3_3	CDS	79636042	79636143	79636042	ID=Msa0475930-mRNA-1:cds;Parent=Msa0475930-mRNA-1
chr3_3	CDS	79636283	79636483	79636283	ID=Msa0475930-mRNA-1:cds;Parent=Msa0475930-mRNA-1
chr3_3	CDS	79636598	79636669	79636598	ID=Msa0475930-mRNA-1:cds;Parent=Msa0475930-mRNA-1
chr3_3	CDS	79636753	79636905	79636753	ID=Msa0475930-mRNA-1:cds;Parent=Msa0475930-mRNA-1
chr3_3	CDS	79637001	79637075	79637001	ID=Msa0475930-mRNA-1:cds;Parent=Msa0475930-mRNA-1
chr3_3	CDS	79637289	79637405	79637289	ID=Msa0475930-mRNA-1:cds;Parent=Msa0475930-mRNA-1
chr3_3	three_prime_UTR	79637406	79637750	79637406	ID=Msa0475930-mRNA-1:three_prime_utr;Parent=Msa0475930-mRNA-1

Gene Sequence

>Msa0475930

ATGGAAGCCATCAGAAAACAAGCCTCCAAGCTCAGAGAACAAGTCGCTCGCCAACAACAGGCTGTGCTGAAACAGTTTGGGGCTGGGGGATATGGAGGTTCGGATAATATGGTTACTGACGAGGCAGAGCTTCAACAGCATCAGAAACTTGAGAAGCTTTACATATCCACACGTGCAGGAAAGCATTATCAAAGGGATATTGTCCGTGGAGTAGAAGGTTACATTGTTACTGGATCAAAGCAAGTTGAAATAGGAACAAAGGTGTCAGAAGATAGCAGGAAATATGGTTCAGAAAATACTTGTACCAGTGGTAGCACGTTATCAAGAGCTGCGCTAAATTATGCACATGCCCGTGCACAAATGGAGAAAGAACGTGGGAACTTACTAAAAGCTCTTGGCACACAGGTATCTACACCCAAATACATGCGCGCGCACACACACATCATAGGAAGGGGTAAACTCTTGTTCAGCATAGCCTGTCACTCTATCCCTAAAGGAGTCCCAACTTGCATTGTTACACCAATTCAAAGCGATCATAATTTGATGGAATTCAAAGCATTGAGGTTATCAAAGCCTGGAACGGTTGCAGAGCCCTTAAGAGCAATGGTGATGGGTGCTCCTTTGGAGGATGCTAGGCATCTTGCTCAACGTTATGACAGAATGCGACAGGATGCTGAAGCCCAGGCTATTGAAGTTTCTAAACGCCAGGCAAAAGTAAGGGAAACACCAGGCAATGCTGAAAATATTATGAAACTGGAAGCAGCTGAAACAAAGCTCCAAGACCTGAAGTCAAACATGGCCATATTGGGGAAGGAAGCAGCTGCAGCAATGACGGCTGTGGAAGCACAGCAGCAGAGGTTAACACTCCAGCGTCTTATAGCTATGGTTGAAGCAGAGCGTGCCTATCATCAAAGAGTGCTCCAAATACTTGATCATCTTGAGGGAGAGGCAAGTGATATGATATCAGAACGGCAGCGTATTGAGGCCCCACCTACACCTAGTGTAGATAACAGCATGCCACCACCTCCACCATATGAAGAAGTGAATGGTGTCTATGCTTCTCAGGAACATAATGGCATAACTGACAGTATGGGTTACTTCTTAGGAGAGGTTTTGTTTCCCTATCATGCTGAGTCTGAAGTTGAACTGAATTTATCAGTTGGGGATTATATTGTCATTCGAAAGGTGTCAAACAATGGATGGGCTGAGGGTGAATGCAAAGGGAAAGCAGGTTGGTTTCCATTTGGTTATGTTGAAAGAAGGGACCAGGTCCTTGCAAGCAAGGTGGCGGAAGTGTTTTGA

Protein sequence

>Msa0475930

MEAIRKQASKLREQVARQQQAVLKQFGAGGYGGSDNMVTDEAELQQHQKLEKLYISTRAGKHYQRDIVRGVEGYIVTGSKQVEIGTKVSEDSRKYGSENTCTSGSTLSRAALNYAHARAQMEKERGNLLKALGTQVSTPKYMRAHTHIIGRGKLLFSIACHSIPKGVPTCIVTPIQSDHNLMEFKALRLSKPGTVAEPLRAMVMGAPLEDARHLAQRYDRMRQDAEAQAIEVSKRQAKVRETPGNAENIMKLEAAETKLQDLKSNMAILGKEAAAAMTAVEAQQQRLTLQRLIAMVEAERAYHQRVLQILDHLEGEASDMISERQRIEAPPTPSVDNSMPPPPPYEEVNGVYASQEHNGITDSMGYFLGEVLFPYHAESEVELNLSVGDYIVIRKVSNNGWAEGECKGKAGWFPFGYVERRDQVLASKVAEVF*