Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475930 | XP_003603992.1 | 83.372 | 433 | 10 | 3 | 1 | 433 | 1 | 371 | 0.0 | 709 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475930 | sp|Q8VWF1|SH3P2_ARATH | 65.820 | 433 | 83 | 4 | 1 | 433 | 1 | 368 | 0.0 | 558 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475930 | G7J7R7 | 83.372 | 433 | 10 | 3 | 1 | 433 | 1 | 371 | 0.0 | 709 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032470 | Msa0475930 | 0.821587 | 3.730763e-53 | -8.615850e-47 |
| Msa0042550 | Msa0475930 | 0.852976 | 3.241200e-61 | -8.615850e-47 |
| Msa0043500 | Msa0475930 | 0.817808 | 2.720961e-52 | -8.615850e-47 |
| Msa0043650 | Msa0475930 | 0.816218 | 6.195024e-52 | -8.615850e-47 |
| Msa0045550 | Msa0475930 | 0.836043 | 1.179355e-56 | -8.615850e-47 |
| Msa0052860 | Msa0475930 | 0.803121 | 4.055391e-49 | -8.615850e-47 |
| Msa0055070 | Msa0475930 | 0.802141 | 6.459562e-49 | -8.615850e-47 |
| Msa0077030 | Msa0475930 | 0.824084 | 9.775212e-54 | -8.615850e-47 |
| Msa0124550 | Msa0475930 | 0.801445 | 8.972772e-49 | -8.615850e-47 |
| Msa0138020 | Msa0475930 | 0.825773 | 3.904198e-54 | -8.615850e-47 |
| Msa0175540 | Msa0475930 | 0.814215 | 1.725529e-51 | -8.615850e-47 |
| Msa0178510 | Msa0475930 | 0.827864 | 1.236222e-54 | -8.615850e-47 |
| Msa0185510 | Msa0475930 | 0.808530 | 2.960463e-50 | -8.615850e-47 |
| Msa0187490 | Msa0475930 | 0.803570 | 3.273009e-49 | -8.615850e-47 |
| Msa0200620 | Msa0475930 | 0.811783 | 5.890401e-51 | -8.615850e-47 |
| Msa0223120 | Msa0475930 | 0.818552 | 1.846759e-52 | -8.615850e-47 |
| Msa0236070 | Msa0475930 | 0.800240 | 1.581629e-48 | -8.615850e-47 |
| Msa0378970 | Msa0475930 | 0.808046 | 3.753678e-50 | -8.615850e-47 |
| Msa0387050 | Msa0475930 | 0.814300 | 1.653127e-51 | -8.615850e-47 |
| Msa0392270 | Msa0475930 | 0.804494 | 2.102365e-49 | -8.615850e-47 |
| Msa0417330 | Msa0475930 | 0.805408 | 1.354609e-49 | -8.615850e-47 |
| Msa0422180 | Msa0475930 | 0.831927 | 1.264825e-55 | -8.615850e-47 |
| Msa0428580 | Msa0475930 | 0.800950 | 1.132908e-48 | -8.615850e-47 |
| Msa0437400 | Msa0475930 | 0.810126 | 1.346164e-50 | -8.615850e-47 |
| Msa0468320 | Msa0475930 | 0.817137 | 3.854252e-52 | -8.615850e-47 |
| Msa0474940 | Msa0475930 | 0.803469 | 3.434296e-49 | -8.615850e-47 |
| Msa0475930 | Msa0485490 | 0.834570 | 2.776375e-56 | -8.615850e-47 |
| Msa0475930 | Msa0514610 | 0.824131 | 9.532036e-54 | -8.615850e-47 |
| Msa0475930 | Msa0518380 | 0.804419 | 2.180022e-49 | -8.615850e-47 |
| Msa0475930 | Msa0518440 | 0.850055 | 2.173855e-60 | -8.615850e-47 |
| Msa0475930 | Msa0523910 | 0.968512 | 8.777109e-129 | -8.615850e-47 |
| Msa0475930 | Msa0532980 | 0.800842 | 1.192112e-48 | -8.615850e-47 |
| Msa0475930 | Msa0618950 | 0.803177 | 3.947771e-49 | -8.615850e-47 |
| Msa0475930 | Msa0618970 | 0.806173 | 9.352851e-50 | -8.615850e-47 |
| Msa0475930 | Msa0620330 | 0.802850 | 4.613694e-49 | -8.615850e-47 |
| Msa0475930 | Msa0680640 | 0.894631 | 2.055745e-75 | -8.615850e-47 |
| Msa0475930 | Msa0682090 | 0.800824 | 1.202035e-48 | -8.615850e-47 |
| Msa0475930 | Msa0695870 | 0.813923 | 2.002174e-51 | -8.615850e-47 |
| Msa0475930 | Msa0716960 | 0.825172 | 5.417339e-54 | -8.615850e-47 |
| Msa0475930 | Msa0717010 | 0.823226 | 1.552271e-53 | -8.615850e-47 |
| Msa0475930 | Msa0721340 | 0.840389 | 8.955432e-58 | -8.615850e-47 |
| Msa0475930 | Msa0741070 | 0.819386 | 1.193336e-52 | -8.615850e-47 |
| Msa0475930 | Msa0741160 | 0.801523 | 8.648172e-49 | -8.615850e-47 |
| Msa0475930 | Msa0749440 | 0.820058 | 8.383639e-53 | -8.615850e-47 |
| Msa0475930 | Msa0751850 | 0.802191 | 6.307231e-49 | -8.615850e-47 |
| Msa0475930 | Msa0797250 | 0.820414 | 6.946416e-53 | -8.615850e-47 |
| Msa0475930 | Msa0801730 | 0.805425 | 1.343263e-49 | -8.615850e-47 |
| Msa0475930 | Msa0809140 | 0.810944 | 8.960478e-51 | -8.615850e-47 |
| Msa0475930 | Msa0821190 | 0.812823 | 3.492113e-51 | -8.615850e-47 |
| Msa0475930 | Msa0831150 | 0.803277 | 3.764933e-49 | -8.615850e-47 |
| Msa0475930 | Msa0831850 | 0.812444 | 4.226329e-51 | -8.615850e-47 |
| Msa0475930 | Msa0847470 | 0.802124 | 6.509848e-49 | -8.615850e-47 |
| Msa0475930 | Msa0862500 | 0.802623 | 5.138559e-49 | -8.615850e-47 |
| Msa0475930 | Msa0866400 | 0.800615 | 1.326202e-48 | -8.615850e-47 |
| Msa0475930 | Msa0992600 | 0.810667 | 1.028496e-50 | -8.615850e-47 |
| Msa0475930 | Msa1016910 | 0.801269 | 9.750672e-49 | -8.615850e-47 |
| Msa0475930 | Msa1026410 | 0.805947 | 1.043866e-49 | -8.615850e-47 |
| Msa0475930 | Msa1031770 | 0.805209 | 1.491083e-49 | -8.615850e-47 |
| Msa0475930 | Msa1058170 | 0.805845 | 1.096704e-49 | -8.615850e-47 |
| Msa0475930 | Msa1063420 | 0.811543 | 6.641221e-51 | -8.615850e-47 |
| Msa0475930 | Msa1077340 | 0.822153 | 2.758034e-53 | -8.615850e-47 |
| Msa0475930 | Msa1080330 | -0.800216 | 1.599178e-48 | -8.615850e-47 |
| Msa0475930 | Msa1102790 | 0.816808 | 4.568378e-52 | -8.615850e-47 |
| Msa0475930 | Msa1115280 | 0.807539 | 4.811573e-50 | -8.615850e-47 |
| Msa0475930 | Msa1132390 | 0.802130 | 6.490462e-49 | -8.615850e-47 |
| Msa0475930 | Msa1143020 | 0.835487 | 1.630605e-56 | -8.615850e-47 |
| Msa0475930 | Msa1156150 | -0.801144 | 1.034061e-48 | -8.615850e-47 |
| Msa0475930 | Msa1207310 | 0.828009 | 1.140973e-54 | -8.615850e-47 |
| Msa0475930 | Msa1270660 | 0.808260 | 3.380066e-50 | -8.615850e-47 |
| Msa0475930 | Msa1270730 | 0.801497 | 8.755690e-49 | -8.615850e-47 |
| Msa0475930 | Msa1285260 | 0.809181 | 2.148001e-50 | -8.615850e-47 |
| Msa0475930 | Msa1331320 | 0.801307 | 9.578559e-49 | -8.615850e-47 |
| Msa0475930 | Msa1332050 | 0.803276 | 3.766740e-49 | -8.615850e-47 |
| Msa0475930 | Msa1337480 | 0.822078 | 2.871571e-53 | -8.615850e-47 |
| Msa0475930 | Msa1371940 | 0.820629 | 6.199027e-53 | -8.615850e-47 |
| Msa0475930 | Msa1372150 | 0.839604 | 1.434931e-57 | -8.615850e-47 |
| Msa0475930 | Msa1376130 | 0.805576 | 1.248592e-49 | -8.615850e-47 |
| Msa0475930 | Msa1377570 | 0.802477 | 5.507624e-49 | -8.615850e-47 |
| Msa0475930 | Msa1382790 | 0.804141 | 2.491294e-49 | -8.615850e-47 |
| Msa0475930 | Msa1389880 | 0.801472 | 8.861462e-49 | -8.615850e-47 |
| Msa0475930 | Msa1400120 | 0.816206 | 6.231273e-52 | -8.615850e-47 |
| Msa0475930 | Msa1401990 | 0.805340 | 1.399804e-49 | -8.615850e-47 |
| Msa0475930 | Msa1404300 | 0.800711 | 1.267802e-48 | -8.615850e-47 |
| Msa0475930 | Msa1406110 | -0.807437 | 5.058086e-50 | -8.615850e-47 |
| Msa0475930 | Msa1407190 | 0.826444 | 2.703939e-54 | -8.615850e-47 |
| Msa0475930 | Msa1407470 | 0.802250 | 6.132771e-49 | -8.615850e-47 |
| Msa0475930 | Msa1415340 | 0.892902 | 1.033844e-74 | -8.615850e-47 |
| Msa0475930 | Msa1426570 | 0.802663 | 5.041121e-49 | -8.615850e-47 |
| Msa0475930 | Msa1428780 | 0.802982 | 4.331844e-49 | -8.615850e-47 |
| Msa0475930 | Msa1432130 | 0.823085 | 1.674304e-53 | -8.615850e-47 |
| Msa0475930 | Msa1444260 | 0.815110 | 1.093164e-51 | -8.615850e-47 |
| Msa0240270 | Msa0475930 | 0.805139 | 1.541988e-49 | -8.615850e-47 |
| Msa0262370 | Msa0475930 | 0.826949 | 2.048160e-54 | -8.615850e-47 |
| Msa0281480 | Msa0475930 | 0.805706 | 1.172926e-49 | -8.615850e-47 |
| Msa0284450 | Msa0475930 | 0.812007 | 5.264167e-51 | -8.615850e-47 |
| Msa0300150 | Msa0475930 | 0.807711 | 4.422847e-50 | -8.615850e-47 |
| Msa0307310 | Msa0475930 | 0.817143 | 3.841709e-52 | -8.615850e-47 |
| Msa0337590 | Msa0475930 | 0.800259 | 1.567413e-48 | -8.615850e-47 |
| Msa0347950 | Msa0475930 | 0.800510 | 1.393613e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475930 | MtrunA17_Chr3g0145091 | 83.372 | 433 | 10 | 3 | 1 | 433 | 1 | 371 | 0.0 | 709 |
| Msa0475930 | MtrunA17_Chr4g0035851 | 76.322 | 435 | 38 | 6 | 1 | 433 | 1 | 372 | 0.0 | 596 |
| Msa0475930 | MtrunA17_Chr8g0380121 | 44.009 | 434 | 156 | 13 | 1 | 433 | 1 | 348 | 9.71e-101 | 304 |
| Msa0475930 | MtrunA17_Chr5g0408971 | 42.334 | 437 | 175 | 11 | 1 | 431 | 1 | 366 | 9.39e-99 | 300 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475930 | AT4G34660.1 | 65.820 | 433 | 83 | 4 | 1 | 433 | 1 | 368 | 0.0 | 558 |
| Msa0475930 | AT4G34660.2 | 62.587 | 433 | 74 | 4 | 1 | 433 | 1 | 345 | 0.0 | 530 |
| Msa0475930 | AT4G34660.3 | 56.582 | 433 | 72 | 6 | 1 | 433 | 1 | 317 | 9.70e-155 | 441 |
| Msa0475930 | AT4G18060.1 | 45.392 | 434 | 153 | 11 | 1 | 433 | 1 | 351 | 5.26e-113 | 336 |
| Msa0475930 | AT1G31440.1 | 37.705 | 305 | 119 | 5 | 195 | 431 | 132 | 433 | 8.78e-59 | 199 |
| Msa0475930 | AT1G31440.1 | 55.396 | 139 | 58 | 2 | 1 | 139 | 1 | 135 | 1.79e-36 | 139 |
| Msa0475930 | AT4G39020.1 | 68.235 | 85 | 27 | 0 | 349 | 433 | 85 | 169 | 5.08e-37 | 133 |
Find 154 sgRNAs with CRISPR-Local
Find 412 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAAATTGATTTGTGATTT+AGG | 0.163304 | 3_3:+79637495 | Msa0475930:three_prime_UTR |
| CCTCAAGATGATCAAGTATT+TGG | 0.207462 | 3_3:-79636633 | None:intergenic |
| CTTTCGCACCTTGTGTTCTT+AGG | 0.209218 | 3_3:+79637609 | Msa0475930:three_prime_UTR |
| TGCTGAAACAGTTTGGGGCT+GGG | 0.217852 | 3_3:+79632937 | Msa0475930:CDS |
| ATGCAAGTTGGGACTCCTTT+AGG | 0.223909 | 3_3:-79634606 | None:intergenic |
| GTGCTGAAACAGTTTGGGGC+TGG | 0.250806 | 3_3:+79632936 | Msa0475930:CDS |
| TGTGTGCGCGCGCATGTATT+TGG | 0.270497 | 3_3:-79633611 | None:intergenic |
| TTTGTCTTGTTTCTTTGTTT+TGG | 0.281231 | 3_3:+79632216 | Msa0475930:five_prime_UTR |
| TGCAAGTTGGGACTCCTTTA+GGG | 0.301402 | 3_3:-79634605 | None:intergenic |
| TAATGGCATAACTGACAGTA+TGG | 0.305114 | 3_3:+79636866 | Msa0475930:CDS |
| ACCCATCACCATTGCTCTTA+AGG | 0.311073 | 3_3:-79636052 | None:intergenic |
| GTAGAAGGTTACATTGTTAC+TGG | 0.311388 | 3_3:+79633185 | Msa0475930:CDS |
| ATATGGAGGTTCGGATAATA+TGG | 0.313809 | 3_3:+79632962 | Msa0475930:CDS |
| AGGCTGTGCTGAAACAGTTT+GGG | 0.315561 | 3_3:+79632931 | Msa0475930:intron |
| GAAGTCAAACATGGCCATAT+TGG | 0.316099 | 3_3:+79636384 | Msa0475930:CDS |
| TGCTGAAAATATTATGAAAC+TGG | 0.318785 | 3_3:+79636333 | Msa0475930:CDS |
| GACAGTATGGGTTACTTCTT+AGG | 0.321074 | 3_3:+79636879 | Msa0475930:CDS |
| CTTCTGTCACTAACCGTTCC+AGG | 0.327519 | 3_3:-79634690 | None:intergenic |
| AAGTCAAACATGGCCATATT+GGG | 0.328488 | 3_3:+79636385 | Msa0475930:CDS |
| CCATGTTTGACTTCAGGTCT+TGG | 0.331661 | 3_3:-79636375 | None:intergenic |
| TTGTGAATGTGTTCGTGTTT+TGG | 0.333490 | 3_3:+79637435 | Msa0475930:three_prime_UTR |
| TAGGCTGTGCTGAAACAGTT+TGG | 0.335056 | 3_3:+79632930 | Msa0475930:intron |
| TTACTGGAGGAATATATTCT+TGG | 0.341447 | 3_3:-79637657 | None:intergenic |
| GGATCAAAGCAAGTTGAAAT+AGG | 0.341883 | 3_3:+79633206 | Msa0475930:CDS |
| ATATGGCCATGTTTGACTTC+AGG | 0.342498 | 3_3:-79636381 | None:intergenic |
| GCTGAAACAGTTTGGGGCTG+GGG | 0.344123 | 3_3:+79632938 | Msa0475930:CDS |
| AATGGTGATGGGTGCTCCTT+TGG | 0.360393 | 3_3:+79636062 | Msa0475930:CDS |
| AGCTGCTTCCTTCCCCAATA+TGG | 0.361155 | 3_3:-79636398 | None:intergenic |
| ATATTCCTCCAGTAATTATA+TGG | 0.361319 | 3_3:+79637665 | Msa0475930:three_prime_UTR |
| CAATAGCACCATATAATTAC+TGG | 0.364454 | 3_3:-79637673 | None:intergenic |
| TCAGAAGATAGCAGGAAATA+TGG | 0.369835 | 3_3:+79633460 | Msa0475930:CDS |
| AAATTATGATCGCTTTGAAT+TGG | 0.370108 | 3_3:-79634636 | None:intergenic |
| CCCATCACCATTGCTCTTAA+GGG | 0.378074 | 3_3:-79636051 | None:intergenic |
| CGCGCGCACACACACATCAT+AGG | 0.380559 | 3_3:+79633622 | Msa0475930:CDS |
| AACTTCAGACTCAGCATGAT+AGG | 0.393217 | 3_3:-79637011 | None:intergenic |
| ATAATTGACAAAATTAGCTT+TGG | 0.394974 | 3_3:+79637718 | Msa0475930:three_prime_UTR |
| TCAAAGCGATCATAATTTGA+TGG | 0.396396 | 3_3:+79634641 | Msa0475930:CDS |
| AGCGACTTGTTCTCTGAGCT+TGG | 0.399794 | 3_3:-79632381 | None:intergenic |
| TTGGAGCACTCTTTGATGAT+AGG | 0.401284 | 3_3:-79636614 | None:intergenic |
| TAACTCTTCCATTGCATTGG+AGG | 0.406254 | 3_3:+79637571 | Msa0475930:three_prime_UTR |
| TTGAACTGAATTTATCAGTT+GGG | 0.407755 | 3_3:+79637032 | Msa0475930:CDS |
| GATATTGTCCGTGGAGTAGA+AGG | 0.411921 | 3_3:+79633170 | Msa0475930:CDS |
| CCCTATGGCAAGAAACCAAC+TGG | 0.418105 | 3_3:-79637411 | None:intergenic |
| GTGTGCGCGCGCATGTATTT+GGG | 0.418125 | 3_3:-79633610 | None:intergenic |
| ACACCATTCACTTCTTCATA+TGG | 0.418813 | 3_3:-79636825 | None:intergenic |
| TGCACATGCCCGTGCACAAA+TGG | 0.428414 | 3_3:+79633537 | Msa0475930:CDS |
| ACAAGTCGCTCGCCAACAAC+AGG | 0.429620 | 3_3:+79632394 | Msa0475930:CDS |
| CCACCTTGCTTGCAAGGACC+TGG | 0.436876 | 3_3:-79637369 | None:intergenic |
| AAAGCAGGTTGGTTTCCATT+TGG | 0.437998 | 3_3:+79637328 | Msa0475930:CDS |
| TCTTCATATGGTGGAGGTGG+TGG | 0.441768 | 3_3:-79636813 | None:intergenic |
| CCAGTTGGTTTCTTGCCATA+GGG | 0.447327 | 3_3:+79637411 | Msa0475930:three_prime_UTR |
| CATTTGGTTATGTTGAAAGA+AGG | 0.450802 | 3_3:+79637344 | Msa0475930:CDS |
| TCATAACTCTTCCATTGCAT+TGG | 0.457106 | 3_3:+79637568 | Msa0475930:three_prime_UTR |
| GAATGGTGTCTATGCTTCTC+AGG | 0.460161 | 3_3:+79636839 | Msa0475930:CDS |
| CTAAACGCCAGGCAAAAGTA+AGG | 0.465429 | 3_3:+79636296 | Msa0475930:CDS |
| TATGCTTCTCAGGAACATAA+TGG | 0.468519 | 3_3:+79636849 | Msa0475930:CDS |
| GACAGGTGTCAAACAATGGA+TGG | 0.474962 | 3_3:+79637284 | Msa0475930:intron |
| CTTCCGCCACCTTGCTTGCA+AGG | 0.475894 | 3_3:-79637375 | None:intergenic |
| TTCTTTCTCCATTTGTGCAC+GGG | 0.480707 | 3_3:-79633545 | None:intergenic |
| TCCAGTTGGTTTCTTGCCAT+AGG | 0.483850 | 3_3:+79637410 | Msa0475930:three_prime_UTR |
| CAAATACTTGATCATCTTGA+GGG | 0.487070 | 3_3:+79636634 | Msa0475930:CDS |
| CTTCTTTCAACATAACCAAA+TGG | 0.487119 | 3_3:-79637343 | None:intergenic |
| GGTGATGGGTGCTCCTTTGG+AGG | 0.492968 | 3_3:+79636065 | Msa0475930:CDS |
| ACTTCTTCATATGGTGGAGG+TGG | 0.493280 | 3_3:-79636816 | None:intergenic |
| TCCTTTAGGGATAGAGTGAC+AGG | 0.498762 | 3_3:-79634592 | None:intergenic |
| GGGCTGAGGGTGAATGCAAA+GGG | 0.500360 | 3_3:+79637305 | Msa0475930:CDS |
| GGAAGCAGCTGCAGCAATGA+CGG | 0.500902 | 3_3:+79636411 | Msa0475930:CDS |
| CCGTGTTGGTGGTGGAGTCT+TGG | 0.503254 | 3_3:+79632251 | Msa0475930:five_prime_UTR |
| GTTCTTTCTCCATTTGTGCA+CGG | 0.505811 | 3_3:-79633546 | None:intergenic |
| GTGCTCCTTTGGAGGATGCT+AGG | 0.510304 | 3_3:+79636073 | Msa0475930:CDS |
| TTTCTTTCAGCATTATCAAA+GGG | 0.513025 | 3_3:+79633148 | Msa0475930:intron |
| TATTGAAGTTTCTAAACGCC+AGG | 0.513265 | 3_3:+79636285 | Msa0475930:CDS |
| GTTGAACTGAATTTATCAGT+TGG | 0.517089 | 3_3:+79637031 | Msa0475930:CDS |
| ATTTGGTTATGTTGAAAGAA+GGG | 0.517567 | 3_3:+79637345 | Msa0475930:CDS |
| GACTTGTTCTCTGAGCTTGG+AGG | 0.518509 | 3_3:-79632378 | None:intergenic |
| TATCTACACTAGGTGTAGGT+GGG | 0.518680 | 3_3:-79636782 | None:intergenic |
| GCCTGTCACTCTATCCCTAA+AGG | 0.520063 | 3_3:+79634591 | Msa0475930:CDS |
| CCCTTAAGAGCAATGGTGAT+GGG | 0.520874 | 3_3:+79636051 | Msa0475930:CDS |
| TTGGTGTAACAATGCAAGTT+GGG | 0.523464 | 3_3:-79634617 | None:intergenic |
| TTATCTACACTAGGTGTAGG+TGG | 0.524126 | 3_3:-79636783 | None:intergenic |
| CTGTTATCTACACTAGGTGT+AGG | 0.524825 | 3_3:-79636786 | None:intergenic |
| TTCCATTCAATTCAAAAGAG+AGG | 0.527113 | 3_3:-79632339 | None:intergenic |
| AGGGGAAGGGAACCTGTTGT+TGG | 0.530921 | 3_3:-79632406 | None:intergenic |
| TGAACTGAATTTATCAGTTG+GGG | 0.532330 | 3_3:+79637033 | Msa0475930:CDS |
| CATATCCACACGTGCAGGAA+AGG | 0.533423 | 3_3:+79633034 | Msa0475930:CDS |
| GGTCCTTGCAAGCAAGGTGG+CGG | 0.537462 | 3_3:+79637372 | Msa0475930:CDS |
| CTGAAACAGTTTGGGGCTGG+GGG | 0.538217 | 3_3:+79632939 | Msa0475930:CDS |
| CAAAGGTGTCAGAAGATAGC+AGG | 0.539497 | 3_3:+79633452 | Msa0475930:CDS |
| ACTTGATCATCTTGAGGGAG+AGG | 0.539980 | 3_3:+79636639 | Msa0475930:CDS |
| ATCAGAACGGCAGCGTATTG+AGG | 0.541345 | 3_3:+79636758 | Msa0475930:CDS |
| GGTGAATGCAAAGGGAAAGC+AGG | 0.542608 | 3_3:+79637313 | Msa0475930:CDS |
| AGCTGCAGCAATGACGGCTG+TGG | 0.542761 | 3_3:+79636417 | Msa0475930:CDS |
| TGATGGAATTCAAAGCATTG+AGG | 0.543213 | 3_3:+79634658 | Msa0475930:CDS |
| CCAAATACTTGATCATCTTG+AGG | 0.543542 | 3_3:+79636633 | Msa0475930:CDS |
| GGCTGTGCTGAAACAGTTTG+GGG | 0.543764 | 3_3:+79632932 | Msa0475930:intron |
| ATTTCTTTCAGCATTATCAA+AGG | 0.545451 | 3_3:+79633147 | Msa0475930:intron |
| GCATTGAGGTTATCAAAGCC+TGG | 0.545460 | 3_3:+79634672 | Msa0475930:CDS |
| TTCACTTCTTCATATGGTGG+AGG | 0.545910 | 3_3:-79636819 | None:intergenic |
| GCCCTTAAGAGCAATGGTGA+TGG | 0.546031 | 3_3:+79636050 | Msa0475930:CDS |
| GGGAACTTACTAAAAGCTCT+TGG | 0.551243 | 3_3:+79633571 | Msa0475930:CDS |
| GGACCAGGTCCTTGCAAGCA+AGG | 0.553869 | 3_3:+79637366 | Msa0475930:CDS |
| GTCAAACAATGGATGGGCTG+AGG | 0.554397 | 3_3:+79637291 | Msa0475930:CDS |
| TGGGCTGAGGGTGAATGCAA+AGG | 0.554437 | 3_3:+79637304 | Msa0475930:CDS |
| CTTTACATATCCACACGTGC+AGG | 0.554567 | 3_3:+79633029 | Msa0475930:CDS |
| GGATTATATTGTCATTCGAA+AGG | 0.558804 | 3_3:+79637054 | Msa0475930:CDS |
| ACTAGAAACCGTGTTGGTGG+TGG | 0.562391 | 3_3:+79632243 | Msa0475930:five_prime_UTR |
| GCGACAGGATGCTGAAGCCC+AGG | 0.562762 | 3_3:+79636122 | Msa0475930:CDS |
| ACTCCAGCGTCTTATAGCTA+TGG | 0.563682 | 3_3:+79636462 | Msa0475930:CDS |
| ACTTCAGACTCAGCATGATA+GGG | 0.565386 | 3_3:-79637010 | None:intergenic |
| CTGTGGAAGCACAGCAGCAG+AGG | 0.569999 | 3_3:+79636434 | Msa0475930:CDS |
| ACGTTATGACAGAATGCGAC+AGG | 0.570308 | 3_3:+79636107 | Msa0475930:CDS |
| TGCAGAGCCCTTAAGAGCAA+TGG | 0.574125 | 3_3:+79636044 | Msa0475930:CDS |
| AGTAACCTTTCCTGCACGTG+TGG | 0.574166 | 3_3:-79633039 | None:intergenic |
| TCTTGATAACGTGCTACCAC+TGG | 0.575621 | 3_3:-79633500 | None:intergenic |
| ATCTACACTAGGTGTAGGTG+GGG | 0.575722 | 3_3:-79636781 | None:intergenic |
| TCAAACAATGGATGGGCTGA+GGG | 0.578585 | 3_3:+79637292 | Msa0475930:CDS |
| TATGAACACCTCCAATGCAA+TGG | 0.578677 | 3_3:-79637579 | None:intergenic |
| GAACACATTCACAATCCCTA+TGG | 0.586341 | 3_3:-79637426 | None:intergenic |
| CCACCATATGAAGAAGTGAA+TGG | 0.586782 | 3_3:+79636822 | Msa0475930:CDS |
| GCGCGCACACACACATCATA+GGG | 0.588701 | 3_3:+79633623 | Msa0475930:CDS |
| CCATTCACTTCTTCATATGG+TGG | 0.591442 | 3_3:-79636822 | None:intergenic |
| TTATGTTGAAAGAAGGGACC+AGG | 0.597893 | 3_3:+79637351 | Msa0475930:CDS |
| GAGGTTATCAAAGCCTGGAA+CGG | 0.598790 | 3_3:+79634677 | Msa0475930:CDS |
| CTTAATAACCTAAGAACACA+AGG | 0.598861 | 3_3:-79637617 | None:intergenic |
| ATTGGTGTAACAATGCAAGT+TGG | 0.603908 | 3_3:-79634618 | None:intergenic |
| AAACATGGCCATATTGGGGA+AGG | 0.604010 | 3_3:+79636390 | Msa0475930:CDS |
| ACTAAAAGCTCTTGGCACAC+AGG | 0.606319 | 3_3:+79633579 | Msa0475930:CDS |
| AATGCAAAGGGAAAGCAGGT+TGG | 0.608458 | 3_3:+79637317 | Msa0475930:CDS |
| TCTATCGATCGATAATCGCA+TGG | 0.614516 | 3_3:-79637530 | None:intergenic |
| TATGGGTTACTTCTTAGGAG+AGG | 0.616229 | 3_3:+79636884 | Msa0475930:CDS |
| ATGTTATTTAATAGGAACAA+AGG | 0.619754 | 3_3:+79633435 | Msa0475930:intron |
| CAAAGAAACAAGACAAACAG+AGG | 0.624976 | 3_3:-79632210 | None:intergenic |
| CCAAGACCTGAAGTCAAACA+TGG | 0.625705 | 3_3:+79636375 | Msa0475930:CDS |
| TAAACGCCAGGCAAAAGTAA+GGG | 0.626804 | 3_3:+79636297 | Msa0475930:CDS |
| GCACAAATGGAGAAAGAACG+TGG | 0.633748 | 3_3:+79633550 | Msa0475930:CDS |
| TCAGAAAATACTTGTACCAG+TGG | 0.634478 | 3_3:+79633484 | Msa0475930:CDS |
| CAATGTAACCTTCTACTCCA+CGG | 0.635038 | 3_3:-79633178 | None:intergenic |
| AGTCAAACATGGCCATATTG+GGG | 0.637825 | 3_3:+79636386 | Msa0475930:CDS |
| ATACCATAGCTATAAGACGC+TGG | 0.640354 | 3_3:-79636465 | None:intergenic |
| AATGGCATAACTGACAGTAT+GGG | 0.640455 | 3_3:+79636867 | Msa0475930:CDS |
| AGATGCCTAGCATCCTCCAA+AGG | 0.642878 | 3_3:-79636078 | None:intergenic |
| GGTACAACTAGAAACCGTGT+TGG | 0.644367 | 3_3:+79632237 | Msa0475930:five_prime_UTR |
| TATCAAAGGGATATTGTCCG+TGG | 0.648998 | 3_3:+79633161 | Msa0475930:CDS |
| ACAACTAGAAACCGTGTTGG+TGG | 0.651132 | 3_3:+79632240 | Msa0475930:five_prime_UTR |
| GGCATGCTGTTATCTACACT+AGG | 0.651577 | 3_3:-79636792 | None:intergenic |
| ACAGGTGTCAAACAATGGAT+GGG | 0.661310 | 3_3:+79637285 | Msa0475930:intron |
| CCAAGACTCCACCACCAACA+CGG | 0.661774 | 3_3:-79632251 | None:intergenic |
| AATGATAGATGATATCAGAA+CGG | 0.667024 | 3_3:+79636745 | Msa0475930:intron |
| GGATAATATGGTTACTGACG+AGG | 0.675143 | 3_3:+79632974 | Msa0475930:CDS |
| AAAGAAACAAGACAAACAGA+GGG | 0.676607 | 3_3:-79632209 | None:intergenic |
| CCAGGTCCTTGCAAGCAAGG+TGG | 0.677427 | 3_3:+79637369 | Msa0475930:CDS |
| GCAAAAGTAAGGGAAACACC+AGG | 0.682366 | 3_3:+79636307 | Msa0475930:CDS |
| TAGCACCATATAATTACTGG+AGG | 0.687741 | 3_3:-79637670 | None:intergenic |
| CACAAATGGAGAAAGAACGT+GGG | 0.696312 | 3_3:+79633551 | Msa0475930:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTTTATGATAAAAATAAAT+CGG | - | chr3_3:79634100-79634119 | None:intergenic | 10.0% |
| !!! | TTATTTATTTTTTGAAAACT+TGG | + | chr3_3:79635014-79635033 | Msa0475930:intron | 10.0% |
| !! | AAAAGAAAAAATAAAAAAAC+TGG | - | chr3_3:79636175-79636194 | None:intergenic | 10.0% |
| !!! | GTTTTTTTATTTTTTCTTTT+TGG | + | chr3_3:79636175-79636194 | Msa0475930:intron | 10.0% |
| !!! | TTCTATACATGTTATTTAAT+AGG | + | chr3_3:79633427-79633446 | Msa0475930:intron | 15.0% |
| !!! | TTGTTTTCTATTTTTGTTTT+TGG | + | chr3_3:79633831-79633850 | Msa0475930:intron | 15.0% |
| !! | TTGTGATATTGATAAAATAT+TGG | - | chr3_3:79634273-79634292 | None:intergenic | 15.0% |
| !!! | NNNNNTTTTCCTACATTTTT+GGG | - | chr3_3:79634313-79634332 | None:intergenic | 15.0% |
| !!! | NNNNNNTTTTCCTACATTTT+TGG | - | chr3_3:79634314-79634333 | None:intergenic | 15.0% |
| !!! | TTATTTTTAAACTTGTCTTT+TGG | + | chr3_3:79635241-79635260 | Msa0475930:intron | 15.0% |
| !! | TTGAAATTGGTAAAAAATAT+TGG | - | chr3_3:79635535-79635554 | None:intergenic | 15.0% |
| !! | ATCAAAAAGAAAACAATATT+GGG | - | chr3_3:79635567-79635586 | None:intergenic | 15.0% |
| !! | TATCAAAAAGAAAACAATAT+TGG | - | chr3_3:79635568-79635587 | None:intergenic | 15.0% |
| !!! | TTTCTATTTTAAAATGATCT+GGG | + | chr3_3:79635601-79635620 | Msa0475930:intron | 15.0% |
| !!! | TTGTTCGTAATTTATTTTTT+CGG | + | chr3_3:79637224-79637243 | Msa0475930:intron | 15.0% |
| !! | AGATAATACCAATAATAAGT+TGG | + | chr3_3:79632574-79632593 | Msa0475930:intron | 20.0% |
| !!! | TTAGATATAAACACTTGTTA+AGG | - | chr3_3:79632782-79632801 | None:intergenic | 20.0% |
| !! | TTGAAATAGGTTAGTAATAT+TGG | + | chr3_3:79633219-79633238 | Msa0475930:intron | 20.0% |
| !! | ATAAGATATTAGAAATAGAG+AGG | - | chr3_3:79633341-79633360 | None:intergenic | 20.0% |
| !! | AATATCTTATATTCATGCAT+TGG | + | chr3_3:79633351-79633370 | Msa0475930:intron | 20.0% |
| !! | AAATTCAATGACAATATGAT+AGG | - | chr3_3:79633403-79633422 | None:intergenic | 20.0% |
| !!! | ATGTTATTTAATAGGAACAA+AGG | + | chr3_3:79633435-79633454 | Msa0475930:intron | 20.0% |
| !! | ATGATAATTTAACATTACAG+TGG | - | chr3_3:79633714-79633733 | None:intergenic | 20.0% |
| !! | AATGTTAAATTATCATTGCT+TGG | + | chr3_3:79633718-79633737 | Msa0475930:intron | 20.0% |
| !! | TAGACTATTTATTATCTGAA+AGG | + | chr3_3:79633957-79633976 | Msa0475930:intron | 20.0% |
| !! | AGACTATTTATTATCTGAAA+GGG | + | chr3_3:79633958-79633977 | Msa0475930:intron | 20.0% |
| !! | ATATTTATAGGGTGAAAATT+AGG | - | chr3_3:79634039-79634058 | None:intergenic | 20.0% |
| !!! | TAATTTTCACCCTATAAATA+TGG | + | chr3_3:79634038-79634057 | Msa0475930:intron | 20.0% |
| !!! | GAAAAAACAGTTTTAAAATC+TGG | - | chr3_3:79634146-79634165 | None:intergenic | 20.0% |
| !!! | TTAAACAAGTTCTAGAAAAT+TGG | - | chr3_3:79634215-79634234 | None:intergenic | 20.0% |
| !! | TATAATAGTTAATTACACAG+AGG | + | chr3_3:79634817-79634836 | Msa0475930:intron | 20.0% |
| !! | GAATTAAATCAATAATGCAA+TGG | - | chr3_3:79634875-79634894 | None:intergenic | 20.0% |
| !!! | TTTATTGGTGTATATCTTTT+GGG | + | chr3_3:79635274-79635293 | Msa0475930:intron | 20.0% |
| !! | TATATTTGTTTAAAAACCTC+AGG | + | chr3_3:79635305-79635324 | Msa0475930:intron | 20.0% |
| !!! | CTGATTTTAAAAACAAAAAC+CGG | + | chr3_3:79635328-79635347 | Msa0475930:intron | 20.0% |
| !! | TTGATTTATGAAAAACAAAC+CGG | + | chr3_3:79635358-79635377 | Msa0475930:intron | 20.0% |
| !!! | GAATTACAAAAACCATTTTT+AGG | + | chr3_3:79635500-79635519 | Msa0475930:intron | 20.0% |
| !!! | TTTTTTACCAATTTCAAATG+TGG | + | chr3_3:79635538-79635557 | Msa0475930:intron | 20.0% |
| !!! | TTTTTACCAATTTCAAATGT+GGG | + | chr3_3:79635539-79635558 | Msa0475930:intron | 20.0% |
| !!! | TATTGTTTTCTTTTTGATAC+AGG | + | chr3_3:79635569-79635588 | Msa0475930:intron | 20.0% |
| !!! | GTTTCTATTTTAAAATGATC+TGG | + | chr3_3:79635600-79635619 | Msa0475930:intron | 20.0% |
| !! | AAATTGAAACAATTCAACAA+GGG | - | chr3_3:79635830-79635849 | None:intergenic | 20.0% |
| !! | AAAATTGAAACAATTCAACA+AGG | - | chr3_3:79635831-79635850 | None:intergenic | 20.0% |
| !! | TACTCAGTTAGATTTAATAT+TGG | - | chr3_3:79635896-79635915 | None:intergenic | 20.0% |
| !! | TTATTTGAACATTGAAGTAT+TGG | + | chr3_3:79636008-79636027 | Msa0475930:intron | 20.0% |
| !!! | ATAGATTGCTATTTTTAAGT+GGG | - | chr3_3:79636564-79636583 | None:intergenic | 20.0% |
| !!! | AATAGATTGCTATTTTTAAG+TGG | - | chr3_3:79636565-79636584 | None:intergenic | 20.0% |
| !! | CTTGATATCAAAAGATAATT+CGG | - | chr3_3:79636699-79636718 | None:intergenic | 20.0% |
| !! | ATTTGTAACCTTAAAAGAAA+TGG | - | chr3_3:79636915-79636934 | None:intergenic | 20.0% |
| !! | CAAGTAAAAAATAGAAAAGA+GGG | - | chr3_3:79637169-79637188 | None:intergenic | 20.0% |
| !!! | TGTTCGTAATTTATTTTTTC+GGG | + | chr3_3:79637225-79637244 | Msa0475930:intron | 20.0% |
| !! | AAATCACAATCATATTTGTT+AGG | - | chr3_3:79637263-79637282 | None:intergenic | 20.0% |
| !!! | AGAAAATTGATTTGTGATTT+AGG | + | chr3_3:79637495-79637514 | Msa0475930:three_prime_UTR | 20.0% |
| !!! | ATAATTGACAAAATTAGCTT+TGG | + | chr3_3:79637718-79637737 | Msa0475930:three_prime_UTR | 20.0% |
| !!! | TTTGTCTTGTTTCTTTGTTT+TGG | + | chr3_3:79632216-79632235 | Msa0475930:five_prime_UTR | 25.0% |
| ! | ATAAAATCACGAGTACAAAA+AGG | - | chr3_3:79632481-79632500 | None:intergenic | 25.0% |
| ! | ATTGGTATTATCTACGATTT+AGG | - | chr3_3:79632567-79632586 | None:intergenic | 25.0% |
| ! | CTCAAAATCCAACTTATTAT+TGG | - | chr3_3:79632585-79632604 | None:intergenic | 25.0% |
| ! | AGTAAGAAAAAATTGAGAAG+TGG | - | chr3_3:79632857-79632876 | None:intergenic | 25.0% |
| ! | GTGATTAATTATTAACACCA+CGG | - | chr3_3:79632897-79632916 | None:intergenic | 25.0% |
| ! | AATCACAATTGTTGTGATTT+AGG | + | chr3_3:79632911-79632930 | Msa0475930:intron | 25.0% |
| ! | ATTTCTTTCAGCATTATCAA+AGG | + | chr3_3:79633147-79633166 | Msa0475930:intron | 25.0% |
| ! | TTTCTTTCAGCATTATCAAA+GGG | + | chr3_3:79633148-79633167 | Msa0475930:intron | 25.0% |
| ! | AATAGGTTAGTAATATTGGT+TGG | + | chr3_3:79633223-79633242 | Msa0475930:intron | 25.0% |
| ! | AGTGGAAATCTACATTATTT+CGG | - | chr3_3:79633689-79633708 | None:intergenic | 25.0% |
| ! | TTAAATTATCATTGCTTGGA+TGG | + | chr3_3:79633722-79633741 | Msa0475930:intron | 25.0% |
| ! | GAAAGTCGAAATTTAAGTAT+TGG | + | chr3_3:79633889-79633908 | Msa0475930:intron | 25.0% |
| !! | GAAGTGATAGAAAATTTTGA+TGG | + | chr3_3:79633982-79634001 | Msa0475930:intron | 25.0% |
| !!! | TAGAAAATTTTGATGGTGTT+TGG | + | chr3_3:79633989-79634008 | Msa0475930:intron | 25.0% |
| ! | TTCCAAATCTGATTAAAAAC+TGG | + | chr3_3:79634163-79634182 | Msa0475930:intron | 25.0% |
| !! | TACCAGTTTTTAATCAGATT+TGG | - | chr3_3:79634168-79634187 | None:intergenic | 25.0% |
| ! | TTGATACTTATATCCTTTGT+AGG | - | chr3_3:79634503-79634522 | None:intergenic | 25.0% |
| !! | AAATTATGATCGCTTTGAAT+TGG | - | chr3_3:79634639-79634658 | None:intergenic | 25.0% |
| ! | GTTAACACTAAAATTACACA+TGG | + | chr3_3:79634730-79634749 | Msa0475930:intron | 25.0% |
| ! | ATCAATAATGCAATGGTTAT+TGG | - | chr3_3:79634868-79634887 | None:intergenic | 25.0% |
| !!! | TTTGGTCTTTTGTTGTTTAT+TGG | + | chr3_3:79635259-79635278 | Msa0475930:intron | 25.0% |
| !! | GTTTATTGGTGTATATCTTT+TGG | + | chr3_3:79635273-79635292 | Msa0475930:intron | 25.0% |
| ! | TTCATAAATCAATTCAGAAC+CGG | - | chr3_3:79635350-79635369 | None:intergenic | 25.0% |
| !!! | ACAAAAACCATTTTTAGGTT+TGG | + | chr3_3:79635505-79635524 | Msa0475930:intron | 25.0% |
| !!! | CAAAAACCATTTTTAGGTTT+GGG | + | chr3_3:79635506-79635525 | Msa0475930:intron | 25.0% |
| !! | TTTTCTTTTTGATACAGGTA+AGG | + | chr3_3:79635574-79635593 | Msa0475930:intron | 25.0% |
| ! | GTACATGTAAATGTAATTCT+TGG | + | chr3_3:79635729-79635748 | Msa0475930:intron | 25.0% |
| ! | AATTGAAACAATTCAACAAG+GGG | - | chr3_3:79635829-79635848 | None:intergenic | 25.0% |
| ! | GTTAGATTTAATATTGGACT+TGG | - | chr3_3:79635890-79635909 | None:intergenic | 25.0% |
| ! | AAATGAAAATCAAGATACCT+GGG | - | chr3_3:79636142-79636161 | None:intergenic | 25.0% |
| ! | AAAATGAAAATCAAGATACC+TGG | - | chr3_3:79636143-79636162 | None:intergenic | 25.0% |
| ! | TGCTGAAAATATTATGAAAC+TGG | + | chr3_3:79636333-79636352 | Msa0475930:CDS | 25.0% |
| !!! | CAATCTATTTCTGATTATGA+AGG | + | chr3_3:79636576-79636595 | Msa0475930:intron | 25.0% |
| ! | AATGATAGATGATATCAGAA+CGG | + | chr3_3:79636745-79636764 | Msa0475930:intron | 25.0% |
| ! | AGAAAGTAAAGTAAGCTAAA+CGG | - | chr3_3:79636959-79636978 | None:intergenic | 25.0% |
| ! | TTGAACTGAATTTATCAGTT+GGG | + | chr3_3:79637032-79637051 | Msa0475930:CDS | 25.0% |
| ! | GCAAGTAAAAAATAGAAAAG+AGG | - | chr3_3:79637170-79637189 | None:intergenic | 25.0% |
| !!! | AATATGATTGTGATTTTGAC+AGG | + | chr3_3:79637267-79637286 | Msa0475930:intron | 25.0% |
| ! | ATTTGGTTATGTTGAAAGAA+GGG | + | chr3_3:79637345-79637364 | Msa0475930:CDS | 25.0% |
| ! | ATATTCCTCCAGTAATTATA+TGG | + | chr3_3:79637665-79637684 | Msa0475930:three_prime_UTR | 25.0% |
| AAAGAAACAAGACAAACAGA+GGG | - | chr3_3:79632212-79632231 | None:intergenic | 30.0% | |
| ! | TTCCTCTCTTTTGAATTGAA+TGG | + | chr3_3:79632337-79632356 | Msa0475930:exon | 30.0% |
| TTCCATTCAATTCAAAAGAG+AGG | - | chr3_3:79632342-79632361 | None:intergenic | 30.0% | |
| AATCGAATTGAAAGCGAAAT+AGG | - | chr3_3:79632450-79632469 | None:intergenic | 30.0% | |
| ATTGTTTCATAACAGCAACA+AGG | - | chr3_3:79632506-79632525 | None:intergenic | 30.0% | |
| !! | TATGTTTTGGATACTAAAGC+AGG | - | chr3_3:79632682-79632701 | None:intergenic | 30.0% |
| ! | TGTTGGATGAATCTATGTTT+TGG | - | chr3_3:79632695-79632714 | None:intergenic | 30.0% |
| AACATAGATTCATCCAACAA+AGG | + | chr3_3:79632696-79632715 | Msa0475930:intron | 30.0% | |
| TCTTTGTATTAAGCCTTTGT+TGG | - | chr3_3:79632712-79632731 | None:intergenic | 30.0% | |
| CATTATCAGTAATGAAGGAA+GGG | - | chr3_3:79633117-79633136 | None:intergenic | 30.0% | |
| TCATTATCAGTAATGAAGGA+AGG | - | chr3_3:79633118-79633137 | None:intergenic | 30.0% | |
| CATGTCATTATCAGTAATGA+AGG | - | chr3_3:79633122-79633141 | None:intergenic | 30.0% | |
| AATGACAATATGATAGGAAC+TGG | - | chr3_3:79633397-79633416 | None:intergenic | 30.0% | |
| !! | GTAAGTATTGATGTCAAACT+TGG | - | chr3_3:79633657-79633676 | None:intergenic | 30.0% |
| CTTGTGATTATAATCTAGCA+TGG | - | chr3_3:79633800-79633819 | None:intergenic | 30.0% | |
| CAGACTATTGTAGAAGATTT+CGG | - | chr3_3:79633862-79633881 | None:intergenic | 30.0% | |
| ! | GTATTGGTATCTATTCGATT+TGG | + | chr3_3:79633905-79633924 | Msa0475930:intron | 30.0% |
| !!! | AAAATTTTGATGGTGTTTGG+TGG | + | chr3_3:79633992-79634011 | Msa0475930:intron | 30.0% |
| TATGCAACGCCATATTTATA+GGG | - | chr3_3:79634050-79634069 | None:intergenic | 30.0% | |
| TTTGTAGGACAGCTAAATAT+AGG | - | chr3_3:79634488-79634507 | None:intergenic | 30.0% | |
| TATATTTAGCTGTCCTACAA+AGG | + | chr3_3:79634487-79634506 | Msa0475930:intron | 30.0% | |
| ! | ATGCTTTTATAACTCTCAGA+AGG | + | chr3_3:79634547-79634566 | Msa0475930:intron | 30.0% |
| ! | TGCTTTTATAACTCTCAGAA+GGG | + | chr3_3:79634548-79634567 | Msa0475930:intron | 30.0% |
| TCAAAGCGATCATAATTTGA+TGG | + | chr3_3:79634641-79634660 | Msa0475930:CDS | 30.0% | |
| !!! | TTGTTTTTAAAATCAGCCTG+AGG | - | chr3_3:79635324-79635343 | None:intergenic | 30.0% |
| TTCAAAAAAGCAATCTGGTT+TGG | + | chr3_3:79635382-79635401 | Msa0475930:intron | 30.0% | |
| TGAAATCACACAATTACAAG+TGG | - | chr3_3:79635691-79635710 | None:intergenic | 30.0% | |
| ACTTGTAATTGTGTGATTTC+AGG | + | chr3_3:79635690-79635709 | Msa0475930:intron | 30.0% | |
| CTTGTAATTGTGTGATTTCA+GGG | + | chr3_3:79635691-79635710 | Msa0475930:intron | 30.0% | |
| AAACATAACTCACGTAAATC+TGG | - | chr3_3:79635798-79635817 | None:intergenic | 30.0% | |
| AGATTTACGTGAGTTATGTT+TGG | + | chr3_3:79635797-79635816 | Msa0475930:intron | 30.0% | |
| ATTGAAACAATTCAACAAGG+GGG | - | chr3_3:79635828-79635847 | None:intergenic | 30.0% | |
| ATCCATATACATTCATGAGT+TGG | + | chr3_3:79635926-79635945 | Msa0475930:intron | 30.0% | |
| !! | TGAAGTATTGGCTGATATTT+AGG | + | chr3_3:79636020-79636039 | Msa0475930:intron | 30.0% |
| ! | ATAATATTTTCAGCATTGCC+TGG | - | chr3_3:79636328-79636347 | None:intergenic | 30.0% |
| CAAATACTTGATCATCTTGA+GGG | + | chr3_3:79636634-79636653 | Msa0475930:CDS | 30.0% | |
| ! | AGGTTAGACCATTTCTTTTA+AGG | + | chr3_3:79636904-79636923 | Msa0475930:intron | 30.0% |
| ! | GTTTAGCTTACTTTACTTTC+TGG | + | chr3_3:79636958-79636977 | Msa0475930:intron | 30.0% |
| GTTGAACTGAATTTATCAGT+TGG | + | chr3_3:79637031-79637050 | Msa0475930:CDS | 30.0% | |
| TGAACTGAATTTATCAGTTG+GGG | + | chr3_3:79637033-79637052 | Msa0475930:CDS | 30.0% | |
| GGATTATATTGTCATTCGAA+AGG | + | chr3_3:79637054-79637073 | Msa0475930:CDS | 30.0% | |
| GAAAGGTTTGTGATGATTTA+CGG | + | chr3_3:79637071-79637090 | Msa0475930:intron | 30.0% | |
| AAAAATAGAAAAGAGGGAGA+GGG | - | chr3_3:79637163-79637182 | None:intergenic | 30.0% | |
| AAAAAATAGAAAAGAGGGAG+AGG | - | chr3_3:79637164-79637183 | None:intergenic | 30.0% | |
| CTTCTTTCAACATAACCAAA+TGG | - | chr3_3:79637346-79637365 | None:intergenic | 30.0% | |
| CATTTGGTTATGTTGAAAGA+AGG | + | chr3_3:79637344-79637363 | Msa0475930:CDS | 30.0% | |
| CTTAATAACCTAAGAACACA+AGG | - | chr3_3:79637620-79637639 | None:intergenic | 30.0% | |
| TTACTGGAGGAATATATTCT+TGG | - | chr3_3:79637660-79637679 | None:intergenic | 30.0% | |
| CAATAGCACCATATAATTAC+TGG | - | chr3_3:79637676-79637695 | None:intergenic | 30.0% | |
| CAAAGAAACAAGACAAACAG+AGG | - | chr3_3:79632213-79632232 | None:intergenic | 35.0% | |
| TTCAAACTCGACTAGTAGAT+TGG | + | chr3_3:79632609-79632628 | Msa0475930:intron | 35.0% | |
| ACTAAAGCAGGTCATATACA+AGG | - | chr3_3:79632670-79632689 | None:intergenic | 35.0% | |
| AATTATTAACACCACGGTAG+AGG | - | chr3_3:79632891-79632910 | None:intergenic | 35.0% | |
| ATATGGAGGTTCGGATAATA+TGG | + | chr3_3:79632962-79632981 | Msa0475930:CDS | 35.0% | |
| ACACAGCAAAATTAGAGGAT+TGG | - | chr3_3:79633078-79633097 | None:intergenic | 35.0% | |
| GAGAAACACAGCAAAATTAG+AGG | - | chr3_3:79633083-79633102 | None:intergenic | 35.0% | |
| GTAGAAGGTTACATTGTTAC+TGG | + | chr3_3:79633185-79633204 | Msa0475930:CDS | 35.0% | |
| ! | GGATCAAAGCAAGTTGAAAT+AGG | + | chr3_3:79633206-79633225 | Msa0475930:CDS | 35.0% |
| TCAGAAGATAGCAGGAAATA+TGG | + | chr3_3:79633460-79633479 | Msa0475930:CDS | 35.0% | |
| TCAGAAAATACTTGTACCAG+TGG | + | chr3_3:79633484-79633503 | Msa0475930:CDS | 35.0% | |
| ACACACATCATAGGGTTATT+TGG | + | chr3_3:79633631-79633650 | Msa0475930:intron | 35.0% | |
| TTTAACATTACAGTGGTCAG+TGG | - | chr3_3:79633707-79633726 | None:intergenic | 35.0% | |
| !! | TTATGTTCCTCTTTAGCTTG+TGG | + | chr3_3:79633752-79633771 | Msa0475930:intron | 35.0% |
| AAATAAGCCACAAGCTAAAG+AGG | - | chr3_3:79633762-79633781 | None:intergenic | 35.0% | |
| CTATGCAACGCCATATTTAT+AGG | - | chr3_3:79634051-79634070 | None:intergenic | 35.0% | |
| CTATAAATATGGCGTTGCAT+AGG | + | chr3_3:79634049-79634068 | Msa0475930:intron | 35.0% | |
| !! | CCTACATTTTTGGGAAATAG+TGG | - | chr3_3:79634304-79634323 | None:intergenic | 35.0% |
| CCACTATTTCCCAAAAATGT+AGG | + | chr3_3:79634301-79634320 | Msa0475930:intron | 35.0% | |
| ATTTCAAATGTCCATAGTGC+TGG | - | chr3_3:79634464-79634483 | None:intergenic | 35.0% | |
| ! | GCTTTTATAACTCTCAGAAG+GGG | + | chr3_3:79634549-79634568 | Msa0475930:intron | 35.0% |
| TTGGTGTAACAATGCAAGTT+GGG | - | chr3_3:79634620-79634639 | None:intergenic | 35.0% | |
| ATTGGTGTAACAATGCAAGT+TGG | - | chr3_3:79634621-79634640 | None:intergenic | 35.0% | |
| !! | TGATGGAATTCAAAGCATTG+AGG | + | chr3_3:79634658-79634677 | Msa0475930:CDS | 35.0% |
| ACACTAAAATTACACATGGC+CGG | + | chr3_3:79634734-79634753 | Msa0475930:intron | 35.0% | |
| !!! | TATCTGCAGATTGTTTTTGC+CGG | - | chr3_3:79634756-79634775 | None:intergenic | 35.0% |
| TGTATAGGCTGAAGATTATG+AGG | - | chr3_3:79634790-79634809 | None:intergenic | 35.0% | |
| TCATAATCTTCAGCCTATAC+AGG | + | chr3_3:79634789-79634808 | Msa0475930:intron | 35.0% | |
| CTATTATACTGCACCTGTAT+AGG | - | chr3_3:79634805-79634824 | None:intergenic | 35.0% | |
| AAAATTCAAAGCCTGTTCTC+TGG | + | chr3_3:79634980-79634999 | Msa0475930:intron | 35.0% | |
| AATAAACATGAACCCCCATT+TGG | - | chr3_3:79635226-79635245 | None:intergenic | 35.0% | |
| !!! | CCAGATTGCTTTTTTGAAAC+CGG | - | chr3_3:79635380-79635399 | None:intergenic | 35.0% |
| ! | CTTTTTGATACAGGTAAGGT+TGG | + | chr3_3:79635578-79635597 | Msa0475930:intron | 35.0% |
| ATGGCTCATGTATAGAACTA+AGG | - | chr3_3:79635658-79635677 | None:intergenic | 35.0% | |
| ! | TAGTTCTATACATGAGCCAT+CGG | + | chr3_3:79635658-79635677 | Msa0475930:intron | 35.0% |
| TAGTTATGTACATCCAACTC+AGG | - | chr3_3:79635762-79635781 | None:intergenic | 35.0% | |
| GTCAATATTTACTCACAGTC+AGG | - | chr3_3:79635860-79635879 | None:intergenic | 35.0% | |
| TGTGAGTAAATATTGACGCT+AGG | + | chr3_3:79635863-79635882 | Msa0475930:intron | 35.0% | |
| GACCAACTCATGAATGTATA+TGG | - | chr3_3:79635931-79635950 | None:intergenic | 35.0% | |
| !! | TCTGTCTTTGAAACCTATAC+AGG | + | chr3_3:79636261-79636280 | Msa0475930:intron | 35.0% |
| GAAACTTCAATAGCCTGTAT+AGG | - | chr3_3:79636277-79636296 | None:intergenic | 35.0% | |
| TATTGAAGTTTCTAAACGCC+AGG | + | chr3_3:79636285-79636304 | Msa0475930:CDS | 35.0% | |
| AAGTCAAACATGGCCATATT+GGG | + | chr3_3:79636385-79636404 | Msa0475930:CDS | 35.0% | |
| GGTATTACAGTTTCACCATA+TGG | + | chr3_3:79636483-79636502 | Msa0475930:intron | 35.0% | |
| !!! | GATTGCTATTTTTAAGTGGG+AGG | - | chr3_3:79636561-79636580 | None:intergenic | 35.0% |
| CCTCAAGATGATCAAGTATT+TGG | - | chr3_3:79636636-79636655 | None:intergenic | 35.0% | |
| CCAAATACTTGATCATCTTG+AGG | + | chr3_3:79636633-79636652 | Msa0475930:CDS | 35.0% | |
| ACACCATTCACTTCTTCATA+TGG | - | chr3_3:79636828-79636847 | None:intergenic | 35.0% | |
| TATGCTTCTCAGGAACATAA+TGG | + | chr3_3:79636849-79636868 | Msa0475930:CDS | 35.0% | |
| TAATGGCATAACTGACAGTA+TGG | + | chr3_3:79636866-79636885 | Msa0475930:CDS | 35.0% | |
| AATGGCATAACTGACAGTAT+GGG | + | chr3_3:79636867-79636886 | Msa0475930:CDS | 35.0% | |
| ! | TTTTGACAGGTGTCAAACAA+TGG | + | chr3_3:79637280-79637299 | Msa0475930:intron | 35.0% |
| !!! | AGTGTTTTGAAGTTTCCAGT+TGG | + | chr3_3:79637396-79637415 | Msa0475930:exon | 35.0% |
| ! | TTGTGAATGTGTTCGTGTTT+TGG | + | chr3_3:79637435-79637454 | Msa0475930:three_prime_UTR | 35.0% |
| TCATAACTCTTCCATTGCAT+TGG | + | chr3_3:79637568-79637587 | Msa0475930:three_prime_UTR | 35.0% | |
| TAGCACCATATAATTACTGG+AGG | - | chr3_3:79637673-79637692 | None:intergenic | 35.0% | |
| ! | TTTTGTTGAGAGAGAGAGAG+GGG | - | chr3_3:79632427-79632446 | None:intergenic | 40.0% |
| !! | GTTTTGTTGAGAGAGAGAGA+GGG | - | chr3_3:79632428-79632447 | None:intergenic | 40.0% |
| GACTATCATCCAATATGGGA+CGG | - | chr3_3:79632757-79632776 | None:intergenic | 40.0% | |
| GGACGACTATCATCCAATAT+GGG | - | chr3_3:79632761-79632780 | None:intergenic | 40.0% | |
| AGGACGACTATCATCCAATA+TGG | - | chr3_3:79632762-79632781 | None:intergenic | 40.0% | |
| GGATAATATGGTTACTGACG+AGG | + | chr3_3:79632974-79632993 | Msa0475930:CDS | 40.0% | |
| ! | CAGTAATGAAGGAAGGGTAT+AGG | - | chr3_3:79633111-79633130 | None:intergenic | 40.0% |
| TATCAAAGGGATATTGTCCG+TGG | + | chr3_3:79633161-79633180 | Msa0475930:CDS | 40.0% | |
| CAATGTAACCTTCTACTCCA+CGG | - | chr3_3:79633181-79633200 | None:intergenic | 40.0% | |
| !! | AGGAACTGGTATTGATACTG+CGG | - | chr3_3:79633383-79633402 | None:intergenic | 40.0% |
| TTCTTTCTCCATTTGTGCAC+GGG | - | chr3_3:79633548-79633567 | None:intergenic | 40.0% | |
| GTTCTTTCTCCATTTGTGCA+CGG | - | chr3_3:79633549-79633568 | None:intergenic | 40.0% | |
| CACAAATGGAGAAAGAACGT+GGG | + | chr3_3:79633551-79633570 | Msa0475930:CDS | 40.0% | |
| GGGAACTTACTAAAAGCTCT+TGG | + | chr3_3:79633571-79633590 | Msa0475930:CDS | 40.0% | |
| TAATCTAGCATGGTGAAGCT+TGG | - | chr3_3:79633790-79633809 | None:intergenic | 40.0% | |
| !!! | TTTTGATGGTGTTTGGTGGA+AGG | + | chr3_3:79633996-79634015 | Msa0475930:intron | 40.0% |
| ! | TGGCCTTTTTGTCAAAGTGT+GGG | - | chr3_3:79634444-79634463 | None:intergenic | 40.0% |
| AAACAATCTGCAGATAGCCT+TGG | + | chr3_3:79634760-79634779 | Msa0475930:intron | 40.0% | |
| AACAATCTGCAGATAGCCTT+GGG | + | chr3_3:79634761-79634780 | Msa0475930:intron | 40.0% | |
| GAAGATTATGAGGTTTCCCA+AGG | - | chr3_3:79634780-79634799 | None:intergenic | 40.0% | |
| GCACATCCAAAACATTCTAG+TGG | + | chr3_3:79634925-79634944 | Msa0475930:intron | 40.0% | |
| ! | TCAGCACCACTAGAATGTTT+TGG | - | chr3_3:79634934-79634953 | None:intergenic | 40.0% |
| !! | TGCTGAGAAGATTGGTTTCA+AGG | + | chr3_3:79634948-79634967 | Msa0475930:intron | 40.0% |
| ATAAACATGAGCCAGAGAAC+AGG | - | chr3_3:79634994-79635013 | None:intergenic | 40.0% | |
| AAAACTTGGTATCCAGTCCA+AGG | + | chr3_3:79635028-79635047 | Msa0475930:intron | 40.0% | |
| GAGCAAGCTCTGTCTTTAAA+TGG | - | chr3_3:79635104-79635123 | None:intergenic | 40.0% | |
| CCGGTTTCAAAAAAGCAATC+TGG | + | chr3_3:79635377-79635396 | Msa0475930:intron | 40.0% | |
| AGGCAATCACAAAAATCCCA+CGG | - | chr3_3:79635465-79635484 | None:intergenic | 40.0% | |
| ! | GATTTTTGTGATTGCCTGAG+AGG | + | chr3_3:79635468-79635487 | Msa0475930:intron | 40.0% |
| AATTCTTGTCTGAACCTCTC+AGG | - | chr3_3:79635485-79635504 | None:intergenic | 40.0% | |
| TGGCTACCCAAACCTAAAAA+TGG | - | chr3_3:79635515-79635534 | None:intergenic | 40.0% | |
| ! | TGGGTACCCACATTTGAAAT+TGG | - | chr3_3:79635548-79635567 | None:intergenic | 40.0% |
| GGGATTTGACTATACTGCAT+TGG | + | chr3_3:79635621-79635640 | Msa0475930:intron | 40.0% | |
| TCTTGGATTTCTTCCTGAGT+TGG | + | chr3_3:79635746-79635765 | Msa0475930:intron | 40.0% | |
| TAAACGCCAGGCAAAAGTAA+GGG | + | chr3_3:79636297-79636316 | Msa0475930:CDS | 40.0% | |
| ! | ATATGGCCATGTTTGACTTC+AGG | - | chr3_3:79636384-79636403 | None:intergenic | 40.0% |
| GAAGTCAAACATGGCCATAT+TGG | + | chr3_3:79636384-79636403 | Msa0475930:CDS | 40.0% | |
| AGTCAAACATGGCCATATTG+GGG | + | chr3_3:79636386-79636405 | Msa0475930:CDS | 40.0% | |
| ATACCATAGCTATAAGACGC+TGG | - | chr3_3:79636468-79636487 | None:intergenic | 40.0% | |
| CTAAATACTGCAGCACCATA+TGG | - | chr3_3:79636501-79636520 | None:intergenic | 40.0% | |
| ! | TTGGAGCACTCTTTGATGAT+AGG | - | chr3_3:79636617-79636636 | None:intergenic | 40.0% |
| TATCTACACTAGGTGTAGGT+GGG | - | chr3_3:79636785-79636804 | None:intergenic | 40.0% | |
| TTATCTACACTAGGTGTAGG+TGG | - | chr3_3:79636786-79636805 | None:intergenic | 40.0% | |
| CTGTTATCTACACTAGGTGT+AGG | - | chr3_3:79636789-79636808 | None:intergenic | 40.0% | |
| TTCACTTCTTCATATGGTGG+AGG | - | chr3_3:79636822-79636841 | None:intergenic | 40.0% | |
| CCATTCACTTCTTCATATGG+TGG | - | chr3_3:79636825-79636844 | None:intergenic | 40.0% | |
| CCACCATATGAAGAAGTGAA+TGG | + | chr3_3:79636822-79636841 | Msa0475930:CDS | 40.0% | |
| ! | GACAGTATGGGTTACTTCTT+AGG | + | chr3_3:79636879-79636898 | Msa0475930:CDS | 40.0% |
| ! | TATGGGTTACTTCTTAGGAG+AGG | + | chr3_3:79636884-79636903 | Msa0475930:CDS | 40.0% |
| ACTTCAGACTCAGCATGATA+GGG | - | chr3_3:79637013-79637032 | None:intergenic | 40.0% | |
| AACTTCAGACTCAGCATGAT+AGG | - | chr3_3:79637014-79637033 | None:intergenic | 40.0% | |
| ACAGGTGTCAAACAATGGAT+GGG | + | chr3_3:79637285-79637304 | Msa0475930:intron | 40.0% | |
| !! | AAAGCAGGTTGGTTTCCATT+TGG | + | chr3_3:79637328-79637347 | Msa0475930:CDS | 40.0% |
| TTATGTTGAAAGAAGGGACC+AGG | + | chr3_3:79637351-79637370 | Msa0475930:CDS | 40.0% | |
| GAACACATTCACAATCCCTA+TGG | - | chr3_3:79637429-79637448 | None:intergenic | 40.0% | |
| TCTATCGATCGATAATCGCA+TGG | - | chr3_3:79637533-79637552 | None:intergenic | 40.0% | |
| TAACTCTTCCATTGCATTGG+AGG | + | chr3_3:79637571-79637590 | Msa0475930:three_prime_UTR | 40.0% | |
| TATGAACACCTCCAATGCAA+TGG | - | chr3_3:79637582-79637601 | None:intergenic | 40.0% | |
| GGTACAACTAGAAACCGTGT+TGG | + | chr3_3:79632237-79632256 | Msa0475930:five_prime_UTR | 45.0% | |
| ACAACTAGAAACCGTGTTGG+TGG | + | chr3_3:79632240-79632259 | Msa0475930:five_prime_UTR | 45.0% | |
| !! | CTTGGAGGCTTGTTTTCTGA+TGG | - | chr3_3:79632366-79632385 | None:intergenic | 45.0% |
| !!! | GGTTTTGTTGAGAGAGAGAG+AGG | - | chr3_3:79632429-79632448 | None:intergenic | 45.0% |
| ! | TTTACTAGCTTCCTCTACCG+TGG | + | chr3_3:79632877-79632896 | Msa0475930:intron | 45.0% |
| TAGGCTGTGCTGAAACAGTT+TGG | + | chr3_3:79632930-79632949 | Msa0475930:intron | 45.0% | |
| AGGCTGTGCTGAAACAGTTT+GGG | + | chr3_3:79632931-79632950 | Msa0475930:intron | 45.0% | |
| CTTTACATATCCACACGTGC+AGG | + | chr3_3:79633029-79633048 | Msa0475930:CDS | 45.0% | |
| GATATTGTCCGTGGAGTAGA+AGG | + | chr3_3:79633170-79633189 | Msa0475930:CDS | 45.0% | |
| CTTAGTACACGATGAACCTC+TGG | + | chr3_3:79633287-79633306 | Msa0475930:intron | 45.0% | |
| !! | CAAAGGTGTCAGAAGATAGC+AGG | + | chr3_3:79633452-79633471 | Msa0475930:CDS | 45.0% |
| !! | TCTTGATAACGTGCTACCAC+TGG | - | chr3_3:79633503-79633522 | None:intergenic | 45.0% |
| GCACAAATGGAGAAAGAACG+TGG | + | chr3_3:79633550-79633569 | Msa0475930:CDS | 45.0% | |
| ACTAAAAGCTCTTGGCACAC+AGG | + | chr3_3:79633579-79633598 | Msa0475930:CDS | 45.0% | |
| TCAAAAACCACACCATGCAC+AGG | - | chr3_3:79634075-79634094 | None:intergenic | 45.0% | |
| GTCCCCACACTTTGACAAAA+AGG | + | chr3_3:79634438-79634457 | Msa0475930:intron | 45.0% | |
| ! | GGCCTTTTTGTCAAAGTGTG+GGG | - | chr3_3:79634443-79634462 | None:intergenic | 45.0% |
| !! | CTGGCCTTTTTGTCAAAGTG+TGG | - | chr3_3:79634445-79634464 | None:intergenic | 45.0% |
| TGACAAAAAGGCCAGCACTA+TGG | + | chr3_3:79634450-79634469 | Msa0475930:intron | 45.0% | |
| ! | TCCTTTAGGGATAGAGTGAC+AGG | - | chr3_3:79634595-79634614 | None:intergenic | 45.0% |
| ! | TGCAAGTTGGGACTCCTTTA+GGG | - | chr3_3:79634608-79634627 | None:intergenic | 45.0% |
| ! | ATGCAAGTTGGGACTCCTTT+AGG | - | chr3_3:79634609-79634628 | None:intergenic | 45.0% |
| GCATTGAGGTTATCAAAGCC+TGG | + | chr3_3:79634672-79634691 | Msa0475930:CDS | 45.0% | |
| GAGGTTATCAAAGCCTGGAA+CGG | + | chr3_3:79634677-79634696 | Msa0475930:CDS | 45.0% | |
| ! | TCTAGTGGTGCTGAGAAGAT+TGG | + | chr3_3:79634940-79634959 | Msa0475930:intron | 45.0% |
| !! | ATTGGTCCCCTTGGATTAGT+CGG | - | chr3_3:79635055-79635074 | None:intergenic | 45.0% |
| ! | AAGACAGAGCTTGCTCTGTA+TGG | + | chr3_3:79635108-79635127 | Msa0475930:intron | 45.0% |
| !! | ATGGACTAGCCCACCTAAAT+TGG | + | chr3_3:79635127-79635146 | Msa0475930:intron | 45.0% |
| ! | ATTCCCTCTGGTGCCAATTT+AGG | - | chr3_3:79635143-79635162 | None:intergenic | 45.0% |
| TAGTTAACCACACCATGCAG+CGG | + | chr3_3:79635439-79635458 | Msa0475930:intron | 45.0% | |
| ATGCCAACATATCCTGTGCA+TGG | + | chr3_3:79635972-79635991 | Msa0475930:intron | 45.0% | |
| CAACCATGCACAGGATATGT+TGG | - | chr3_3:79635978-79635997 | None:intergenic | 45.0% | |
| CCCATCACCATTGCTCTTAA+GGG | - | chr3_3:79636054-79636073 | None:intergenic | 45.0% | |
| CCCTTAAGAGCAATGGTGAT+GGG | + | chr3_3:79636051-79636070 | Msa0475930:CDS | 45.0% | |
| ACCCATCACCATTGCTCTTA+AGG | - | chr3_3:79636055-79636074 | None:intergenic | 45.0% | |
| ACGTTATGACAGAATGCGAC+AGG | + | chr3_3:79636107-79636126 | Msa0475930:CDS | 45.0% | |
| CTAAACGCCAGGCAAAAGTA+AGG | + | chr3_3:79636296-79636315 | Msa0475930:CDS | 45.0% | |
| !! | GTGTTTCCCTTACTTTTGCC+TGG | - | chr3_3:79636306-79636325 | None:intergenic | 45.0% |
| GCAAAAGTAAGGGAAACACC+AGG | + | chr3_3:79636307-79636326 | Msa0475930:CDS | 45.0% | |
| ! | CCATGTTTGACTTCAGGTCT+TGG | - | chr3_3:79636378-79636397 | None:intergenic | 45.0% |
| CCAAGACCTGAAGTCAAACA+TGG | + | chr3_3:79636375-79636394 | Msa0475930:CDS | 45.0% | |
| AAACATGGCCATATTGGGGA+AGG | + | chr3_3:79636390-79636409 | Msa0475930:CDS | 45.0% | |
| ACTCCAGCGTCTTATAGCTA+TGG | + | chr3_3:79636462-79636481 | Msa0475930:CDS | 45.0% | |
| ACTTGATCATCTTGAGGGAG+AGG | + | chr3_3:79636639-79636658 | Msa0475930:CDS | 45.0% | |
| ATCTACACTAGGTGTAGGTG+GGG | - | chr3_3:79636784-79636803 | None:intergenic | 45.0% | |
| GGCATGCTGTTATCTACACT+AGG | - | chr3_3:79636795-79636814 | None:intergenic | 45.0% | |
| ! | ACTTCTTCATATGGTGGAGG+TGG | - | chr3_3:79636819-79636838 | None:intergenic | 45.0% |
| GAATGGTGTCTATGCTTCTC+AGG | + | chr3_3:79636839-79636858 | Msa0475930:CDS | 45.0% | |
| ! | GGTGTGCATTTTACTCATGC+AGG | + | chr3_3:79636979-79636998 | Msa0475930:intron | 45.0% |
| GACAGGTGTCAAACAATGGA+TGG | + | chr3_3:79637284-79637303 | Msa0475930:intron | 45.0% | |
| !! | TCAAACAATGGATGGGCTGA+GGG | + | chr3_3:79637292-79637311 | Msa0475930:CDS | 45.0% |
| AATGCAAAGGGAAAGCAGGT+TGG | + | chr3_3:79637317-79637336 | Msa0475930:CDS | 45.0% | |
| ! | TCCAGTTGGTTTCTTGCCAT+AGG | + | chr3_3:79637410-79637429 | Msa0475930:three_prime_UTR | 45.0% |
| ! | CCAGTTGGTTTCTTGCCATA+GGG | + | chr3_3:79637411-79637430 | Msa0475930:three_prime_UTR | 45.0% |
| CTTTCGCACCTTGTGTTCTT+AGG | + | chr3_3:79637609-79637628 | Msa0475930:three_prime_UTR | 45.0% | |
| ! | ACTAGAAACCGTGTTGGTGG+TGG | + | chr3_3:79632243-79632262 | Msa0475930:five_prime_UTR | 50.0% |
| ! | GACTTGTTCTCTGAGCTTGG+AGG | - | chr3_3:79632381-79632400 | None:intergenic | 50.0% |
| ! | AGCGACTTGTTCTCTGAGCT+TGG | - | chr3_3:79632384-79632403 | None:intergenic | 50.0% |
| TTGAGAGAGAGAGAGGGGAA+GGG | - | chr3_3:79632422-79632441 | None:intergenic | 50.0% | |
| TGTCCTAAGCCGTCCCATAT+TGG | + | chr3_3:79632745-79632764 | Msa0475930:intron | 50.0% | |
| CATCCAATATGGGACGGCTT+AGG | - | chr3_3:79632751-79632770 | None:intergenic | 50.0% | |
| GGCTGTGCTGAAACAGTTTG+GGG | + | chr3_3:79632932-79632951 | Msa0475930:intron | 50.0% | |
| ! | TGCTGAAACAGTTTGGGGCT+GGG | + | chr3_3:79632937-79632956 | Msa0475930:CDS | 50.0% |
| CATATCCACACGTGCAGGAA+AGG | + | chr3_3:79633034-79633053 | Msa0475930:CDS | 50.0% | |
| AGTAACCTTTCCTGCACGTG+TGG | - | chr3_3:79633042-79633061 | None:intergenic | 50.0% | |
| GATGAACCTCTGGCAAGCTA+GGG | + | chr3_3:79633297-79633316 | Msa0475930:intron | 50.0% | |
| ! | TGATGGTGTTTGGTGGAAGG+TGG | + | chr3_3:79633999-79634018 | Msa0475930:intron | 50.0% |
| GCCTGTCACTCTATCCCTAA+AGG | + | chr3_3:79634591-79634610 | Msa0475930:CDS | 50.0% | |
| CTTCTGTCACTAACCGTTCC+AGG | - | chr3_3:79634693-79634712 | None:intergenic | 50.0% | |
| TCCAAGGACCGACTAATCCA+AGG | + | chr3_3:79635044-79635063 | Msa0475930:intron | 50.0% | |
| CCAAGGACCGACTAATCCAA+GGG | + | chr3_3:79635045-79635064 | Msa0475930:intron | 50.0% | |
| CAAGGACCGACTAATCCAAG+GGG | + | chr3_3:79635046-79635065 | Msa0475930:intron | 50.0% | |
| ! | CCTCTGGTGCCAATTTAGGT+GGG | - | chr3_3:79635139-79635158 | None:intergenic | 50.0% |
| CCACCTAAATTGGCACCAGA+GGG | + | chr3_3:79635137-79635156 | Msa0475930:intron | 50.0% | |
| ATCGAACCAGAGACCTTGAG+AGG | + | chr3_3:79635161-79635180 | Msa0475930:intron | 50.0% | |
| TTTGCTCCTCTCAAGGTCTC+TGG | - | chr3_3:79635170-79635189 | None:intergenic | 50.0% | |
| ! | CTTGGAGTTTGCTCCTCTCA+AGG | - | chr3_3:79635177-79635196 | None:intergenic | 50.0% |
| !! | TAGTGGTTGGCTTGGGATCT+TGG | - | chr3_3:79635195-79635214 | None:intergenic | 50.0% |
| AAGATCCCAAGCCAACCACT+AGG | + | chr3_3:79635194-79635213 | Msa0475930:intron | 50.0% | |
| ! | TTTGGAGTTGGCCTAGTGGT+TGG | - | chr3_3:79635208-79635227 | None:intergenic | 50.0% |
| ACCACTAGGCCAACTCCAAA+TGG | + | chr3_3:79635208-79635227 | Msa0475930:intron | 50.0% | |
| CCACTAGGCCAACTCCAAAT+GGG | + | chr3_3:79635209-79635228 | Msa0475930:intron | 50.0% | |
| CACTAGGCCAACTCCAAATG+GGG | + | chr3_3:79635210-79635229 | Msa0475930:intron | 50.0% | |
| ACTAGGCCAACTCCAAATGG+GGG | + | chr3_3:79635211-79635230 | Msa0475930:intron | 50.0% | |
| ! | CATGAACCCCCATTTGGAGT+TGG | - | chr3_3:79635220-79635239 | None:intergenic | 50.0% |
| TACAAGTGGTGACTGTCCGA+TGG | - | chr3_3:79635677-79635696 | None:intergenic | 50.0% | |
| GACAACAAGCAACCATGCAC+AGG | - | chr3_3:79635987-79636006 | None:intergenic | 50.0% | |
| TGCAGAGCCCTTAAGAGCAA+TGG | + | chr3_3:79636044-79636063 | Msa0475930:CDS | 50.0% | |
| GCCCTTAAGAGCAATGGTGA+TGG | + | chr3_3:79636050-79636069 | Msa0475930:CDS | 50.0% | |
| !! | AATGGTGATGGGTGCTCCTT+TGG | + | chr3_3:79636062-79636081 | Msa0475930:CDS | 50.0% |
| AGATGCCTAGCATCCTCCAA+AGG | - | chr3_3:79636081-79636100 | None:intergenic | 50.0% | |
| AGCTGCTTCCTTCCCCAATA+TGG | - | chr3_3:79636401-79636420 | None:intergenic | 50.0% | |
| ATCAGAACGGCAGCGTATTG+AGG | + | chr3_3:79636758-79636777 | Msa0475930:CDS | 50.0% | |
| ! | TCTTCATATGGTGGAGGTGG+TGG | - | chr3_3:79636816-79636835 | None:intergenic | 50.0% |
| !! | GTCAAACAATGGATGGGCTG+AGG | + | chr3_3:79637291-79637310 | Msa0475930:CDS | 50.0% |
| GGTGAATGCAAAGGGAAAGC+AGG | + | chr3_3:79637313-79637332 | Msa0475930:CDS | 50.0% | |
| CCCTATGGCAAGAAACCAAC+TGG | - | chr3_3:79637414-79637433 | None:intergenic | 50.0% | |
| CCAAGACTCCACCACCAACA+CGG | - | chr3_3:79632254-79632273 | None:intergenic | 55.0% | |
| ACAAGTCGCTCGCCAACAAC+AGG | + | chr3_3:79632394-79632413 | Msa0475930:CDS | 55.0% | |
| AGGGGAAGGGAACCTGTTGT+TGG | - | chr3_3:79632409-79632428 | None:intergenic | 55.0% | |
| GTTGAGAGAGAGAGAGGGGA+AGG | - | chr3_3:79632423-79632442 | None:intergenic | 55.0% | |
| ! | GTGCTGAAACAGTTTGGGGC+TGG | + | chr3_3:79632936-79632955 | Msa0475930:CDS | 55.0% |
| ! | GCTGAAACAGTTTGGGGCTG+GGG | + | chr3_3:79632938-79632957 | Msa0475930:CDS | 55.0% |
| ! | CTGAAACAGTTTGGGGCTGG+GGG | + | chr3_3:79632939-79632958 | Msa0475930:CDS | 55.0% |
| CGATGAACCTCTGGCAAGCT+AGG | + | chr3_3:79633296-79633315 | Msa0475930:intron | 55.0% | |
| ! | TACACTCCCTAGCTTGCCAG+AGG | - | chr3_3:79633306-79633325 | None:intergenic | 55.0% |
| TGCACATGCCCGTGCACAAA+TGG | + | chr3_3:79633537-79633556 | Msa0475930:CDS | 55.0% | |
| GTGTGCGCGCGCATGTATTT+GGG | - | chr3_3:79633613-79633632 | None:intergenic | 55.0% | |
| TGTGTGCGCGCGCATGTATT+TGG | - | chr3_3:79633614-79633633 | None:intergenic | 55.0% | |
| GCGCGCACACACACATCATA+GGG | + | chr3_3:79633623-79633642 | Msa0475930:CDS | 55.0% | |
| !! | GGATTAGTCGGTCCTTGGAC+TGG | - | chr3_3:79635043-79635062 | None:intergenic | 55.0% |
| !! | CCCTTGGATTAGTCGGTCCT+TGG | - | chr3_3:79635048-79635067 | None:intergenic | 55.0% |
| CCCACCTAAATTGGCACCAG+AGG | + | chr3_3:79635136-79635155 | Msa0475930:intron | 55.0% | |
| ! | CCCTCTGGTGCCAATTTAGG+TGG | - | chr3_3:79635140-79635159 | None:intergenic | 55.0% |
| ! | GTCTCTGGTTCGATTCCCTC+TGG | - | chr3_3:79635155-79635174 | None:intergenic | 55.0% |
| !! | GTTGGCCTAGTGGTTGGCTT+GGG | - | chr3_3:79635202-79635221 | None:intergenic | 55.0% |
| ! | AGTTGGCCTAGTGGTTGGCT+TGG | - | chr3_3:79635203-79635222 | None:intergenic | 55.0% |
| ! | CCCATTTGGAGTTGGCCTAG+TGG | - | chr3_3:79635212-79635231 | None:intergenic | 55.0% |
| ! | GTGCTCCTTTGGAGGATGCT+AGG | + | chr3_3:79636073-79636092 | Msa0475930:CDS | 55.0% |
| GGAAGCAGCTGCAGCAATGA+CGG | + | chr3_3:79636411-79636430 | Msa0475930:CDS | 55.0% | |
| TGGGCTGAGGGTGAATGCAA+AGG | + | chr3_3:79637304-79637323 | Msa0475930:CDS | 55.0% | |
| GGGCTGAGGGTGAATGCAAA+GGG | + | chr3_3:79637305-79637324 | Msa0475930:CDS | 55.0% | |
| !! | CCGTGTTGGTGGTGGAGTCT+TGG | + | chr3_3:79632251-79632270 | Msa0475930:five_prime_UTR | 60.0% |
| ! | CAGTTTGGGGCTGGGGGATA+TGG | + | chr3_3:79632945-79632964 | Msa0475930:CDS | 60.0% |
| ! | TTTGGGGCTGGGGGATATGG+AGG | + | chr3_3:79632948-79632967 | Msa0475930:CDS | 60.0% |
| GGCTGGGGGATATGGAGGTT+CGG | + | chr3_3:79632953-79632972 | Msa0475930:CDS | 60.0% | |
| CGCGCGCACACACACATCAT+AGG | + | chr3_3:79633622-79633641 | Msa0475930:CDS | 60.0% | |
| GCGTTGCATAGGCCTGTGCA+TGG | + | chr3_3:79634060-79634079 | Msa0475930:intron | 60.0% | |
| GCATAGGCCTGTGCATGGTG+TGG | + | chr3_3:79634065-79634084 | Msa0475930:intron | 60.0% | |
| AAAATCCCACGGCCGCTGCA+TGG | - | chr3_3:79635454-79635473 | None:intergenic | 60.0% | |
| !! | GGTGATGGGTGCTCCTTTGG+AGG | + | chr3_3:79636065-79636084 | Msa0475930:CDS | 60.0% |
| AGCTGCAGCAATGACGGCTG+TGG | + | chr3_3:79636417-79636436 | Msa0475930:CDS | 60.0% | |
| ! | CTGTGGAAGCACAGCAGCAG+AGG | + | chr3_3:79636434-79636453 | Msa0475930:CDS | 60.0% |
| GGACCAGGTCCTTGCAAGCA+AGG | + | chr3_3:79637366-79637385 | Msa0475930:CDS | 60.0% | |
| CCACCTTGCTTGCAAGGACC+TGG | - | chr3_3:79637372-79637391 | None:intergenic | 60.0% | |
| CCAGGTCCTTGCAAGCAAGG+TGG | + | chr3_3:79637369-79637388 | Msa0475930:CDS | 60.0% | |
| GGTCCTTGCAAGCAAGGTGG+CGG | + | chr3_3:79637372-79637391 | Msa0475930:CDS | 60.0% | |
| CTTCCGCCACCTTGCTTGCA+AGG | - | chr3_3:79637378-79637397 | None:intergenic | 60.0% | |
| CCAATCCCACCGCCCACTTG+CGG | + | chr3_3:79635070-79635089 | Msa0475930:intron | 65.0% | |
| GCGACAGGATGCTGAAGCCC+AGG | + | chr3_3:79636122-79636141 | Msa0475930:CDS | 65.0% | |
| !! | GGCGGTGGGATTGGTCCCCT+TGG | - | chr3_3:79635064-79635083 | None:intergenic | 70.0% |
| CCGCAAGTGGGCGGTGGGAT+TGG | - | chr3_3:79635073-79635092 | None:intergenic | 70.0% | |
| ATCCCACCGCCCACTTGCGG+CGG | + | chr3_3:79635073-79635092 | Msa0475930:intron | 70.0% | |
| ATGGAGCCCCCGCCGCAAGT+GGG | - | chr3_3:79635085-79635104 | None:intergenic | 70.0% | |
| AATGGAGCCCCCGCCGCAAG+TGG | - | chr3_3:79635086-79635105 | None:intergenic | 70.0% | |
| ACCACACCATGCAGCGGCCG+TGG | + | chr3_3:79635445-79635464 | Msa0475930:intron | 70.0% | |
| CCACACCATGCAGCGGCCGT+GGG | + | chr3_3:79635446-79635465 | Msa0475930:intron | 70.0% | |
| TCCCACCGCCCACTTGCGGC+GGG | + | chr3_3:79635074-79635093 | Msa0475930:intron | 75.0% | |
| CCCACGGCCGCTGCATGGTG+TGG | - | chr3_3:79635449-79635468 | None:intergenic | 75.0% | |
| ! | CCCCGCCGCAAGTGGGCGGT+GGG | - | chr3_3:79635078-79635097 | None:intergenic | 80.0% |
| ! | CCCACCGCCCACTTGCGGCG+GGG | + | chr3_3:79635075-79635094 | Msa0475930:intron | 80.0% |
| ! | CCACCGCCCACTTGCGGCGG+GGG | + | chr3_3:79635076-79635095 | Msa0475930:intron | 80.0% |
| ! | GAGCCCCCGCCGCAAGTGGG+CGG | - | chr3_3:79635082-79635101 | None:intergenic | 80.0% |
| ! | CCCCCGCCGCAAGTGGGCGG+TGG | - | chr3_3:79635079-79635098 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 79632197 | 79637750 | 79632197 | ID=Msa0475930;Name=Msa0475930 |
| chr3_3 | mRNA | 79632197 | 79637750 | 79632197 | ID=Msa0475930-mRNA-1;Parent=Msa0475930;Name=Msa0475930-mRNA-1;_AED=0.25;_eAED=0.25;_QI=159|0.7|0.72|0.90|0.9|0.90|11|345|433 |
| chr3_3 | exon | 79632197 | 79632415 | 79632197 | ID=Msa0475930-mRNA-1:exon:21592;Parent=Msa0475930-mRNA-1 |
| chr3_3 | exon | 79632933 | 79633055 | 79632933 | ID=Msa0475930-mRNA-1:exon:21593;Parent=Msa0475930-mRNA-1 |
| chr3_3 | exon | 79633158 | 79633227 | 79633158 | ID=Msa0475930-mRNA-1:exon:21594;Parent=Msa0475930-mRNA-1 |
| chr3_3 | exon | 79633449 | 79633644 | 79633449 | ID=Msa0475930-mRNA-1:exon:21595;Parent=Msa0475930-mRNA-1 |
| chr3_3 | exon | 79634566 | 79634698 | 79634566 | ID=Msa0475930-mRNA-1:exon:21596;Parent=Msa0475930-mRNA-1 |
| chr3_3 | exon | 79636042 | 79636143 | 79636042 | ID=Msa0475930-mRNA-1:exon:21597;Parent=Msa0475930-mRNA-1 |
| chr3_3 | exon | 79636283 | 79636483 | 79636283 | ID=Msa0475930-mRNA-1:exon:21598;Parent=Msa0475930-mRNA-1 |
| chr3_3 | exon | 79636598 | 79636669 | 79636598 | ID=Msa0475930-mRNA-1:exon:21599;Parent=Msa0475930-mRNA-1 |
| chr3_3 | exon | 79636753 | 79636905 | 79636753 | ID=Msa0475930-mRNA-1:exon:21600;Parent=Msa0475930-mRNA-1 |
| chr3_3 | exon | 79637001 | 79637075 | 79637001 | ID=Msa0475930-mRNA-1:exon:21601;Parent=Msa0475930-mRNA-1 |
| chr3_3 | exon | 79637289 | 79637750 | 79637289 | ID=Msa0475930-mRNA-1:exon:21602;Parent=Msa0475930-mRNA-1 |
| chr3_3 | five_prime_UTR | 79632197 | 79632355 | 79632197 | ID=Msa0475930-mRNA-1:five_prime_utr;Parent=Msa0475930-mRNA-1 |
| chr3_3 | CDS | 79632356 | 79632415 | 79632356 | ID=Msa0475930-mRNA-1:cds;Parent=Msa0475930-mRNA-1 |
| chr3_3 | CDS | 79632933 | 79633055 | 79632933 | ID=Msa0475930-mRNA-1:cds;Parent=Msa0475930-mRNA-1 |
| chr3_3 | CDS | 79633158 | 79633227 | 79633158 | ID=Msa0475930-mRNA-1:cds;Parent=Msa0475930-mRNA-1 |
| chr3_3 | CDS | 79633449 | 79633644 | 79633449 | ID=Msa0475930-mRNA-1:cds;Parent=Msa0475930-mRNA-1 |
| chr3_3 | CDS | 79634566 | 79634698 | 79634566 | ID=Msa0475930-mRNA-1:cds;Parent=Msa0475930-mRNA-1 |
| chr3_3 | CDS | 79636042 | 79636143 | 79636042 | ID=Msa0475930-mRNA-1:cds;Parent=Msa0475930-mRNA-1 |
| chr3_3 | CDS | 79636283 | 79636483 | 79636283 | ID=Msa0475930-mRNA-1:cds;Parent=Msa0475930-mRNA-1 |
| chr3_3 | CDS | 79636598 | 79636669 | 79636598 | ID=Msa0475930-mRNA-1:cds;Parent=Msa0475930-mRNA-1 |
| chr3_3 | CDS | 79636753 | 79636905 | 79636753 | ID=Msa0475930-mRNA-1:cds;Parent=Msa0475930-mRNA-1 |
| chr3_3 | CDS | 79637001 | 79637075 | 79637001 | ID=Msa0475930-mRNA-1:cds;Parent=Msa0475930-mRNA-1 |
| chr3_3 | CDS | 79637289 | 79637405 | 79637289 | ID=Msa0475930-mRNA-1:cds;Parent=Msa0475930-mRNA-1 |
| chr3_3 | three_prime_UTR | 79637406 | 79637750 | 79637406 | ID=Msa0475930-mRNA-1:three_prime_utr;Parent=Msa0475930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
