Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0672520 | XP_024636352.2 | 92.746 | 386 | 28 | 0 | 1 | 386 | 110 | 495 | 0.0 | 758 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0672520 | sp|Q39152|FACR1_ARATH | 49.871 | 387 | 187 | 4 | 1 | 386 | 110 | 490 | 1.49e-139 | 409 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0672520 | G7JJM2 | 92.746 | 386 | 28 | 0 | 1 | 386 | 110 | 495 | 0.0 | 758 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0672520 | Msa0680750 | 0.994950 | 1.196208e-211 | -8.615850e-47 |
Msa0672520 | Msa0680760 | 0.801132 | 1.039963e-48 | -8.615850e-47 |
Msa0672520 | Msa1352380 | 0.948735 | 5.225669e-107 | -8.615850e-47 |
Msa0672520 | Msa1359280 | 0.805827 | 1.106349e-49 | -8.615850e-47 |
Msa0672520 | Msa1420060 | 0.818226 | 2.189015e-52 | -8.615850e-47 |
Msa0219190 | Msa0672520 | 0.804984 | 1.661279e-49 | -8.615850e-47 |
Msa0413930 | Msa0672520 | 0.807924 | 3.986084e-50 | -8.615850e-47 |
Msa0298240 | Msa0672520 | 0.803137 | 4.024410e-49 | -8.615850e-47 |
Msa0545840 | Msa0672520 | 0.951878 | 8.031704e-110 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0672520 | MtrunA17_Chr4g0026711 | 92.746 | 386 | 28 | 0 | 1 | 386 | 110 | 495 | 0.0 | 758 |
Msa0672520 | MtrunA17_Chr4g0026771 | 72.093 | 387 | 106 | 2 | 1 | 386 | 107 | 492 | 0.0 | 563 |
Msa0672520 | MtrunA17_Chr4g0026691 | 50.653 | 383 | 185 | 2 | 4 | 386 | 113 | 491 | 4.49e-138 | 402 |
Msa0672520 | MtrunA17_Chr2g0321201 | 49.608 | 383 | 188 | 4 | 4 | 386 | 115 | 492 | 3.51e-136 | 398 |
Msa0672520 | MtrunA17_Chr4g0026701 | 48.964 | 386 | 193 | 2 | 1 | 386 | 111 | 492 | 2.71e-135 | 395 |
Msa0672520 | MtrunA17_Chr2g0321181 | 48.303 | 383 | 194 | 2 | 4 | 386 | 113 | 491 | 3.82e-132 | 387 |
Msa0672520 | MtrunA17_Chr5g0419501 | 64.626 | 294 | 49 | 4 | 1 | 294 | 110 | 348 | 5.51e-121 | 354 |
Msa0672520 | MtrunA17_Chr6g0465391 | 48.187 | 386 | 165 | 6 | 1 | 386 | 110 | 460 | 5.95e-120 | 355 |
Msa0672520 | MtrunA17_Chr4g0026911 | 69.730 | 185 | 54 | 2 | 204 | 386 | 3 | 187 | 1.16e-90 | 271 |
Msa0672520 | MtrunA17_Chr1g0176054 | 35.516 | 397 | 230 | 9 | 3 | 386 | 225 | 608 | 7.44e-81 | 259 |
Msa0672520 | MtrunA17_Chr5g0431281 | 63.587 | 184 | 65 | 2 | 204 | 386 | 28 | 210 | 8.97e-76 | 233 |
Msa0672520 | MtrunA17_Chr5g0431251 | 75.781 | 128 | 31 | 0 | 77 | 204 | 3 | 130 | 1.88e-68 | 213 |
Msa0672520 | MtrunA17_Chr5g0419491 | 89.362 | 94 | 10 | 0 | 293 | 386 | 7 | 100 | 9.10e-56 | 178 |
Msa0672520 | MtrunA17_Chr4g0026891 | 68.293 | 123 | 37 | 2 | 1 | 122 | 107 | 228 | 2.36e-51 | 173 |
Msa0672520 | MtrunA17_Chr5g0431261 | 59.341 | 91 | 37 | 0 | 204 | 294 | 3 | 93 | 1.29e-32 | 117 |
Msa0672520 | MtrunA17_Chr4g0026901 | 86.207 | 58 | 8 | 0 | 122 | 179 | 16 | 73 | 9.59e-32 | 115 |
Msa0672520 | MtrunA17_Chr6g0465381 | 49.640 | 139 | 70 | 0 | 138 | 276 | 1 | 139 | 1.15e-31 | 118 |
Msa0672520 | MtrunA17_Chr5g0431271 | 73.134 | 67 | 18 | 0 | 138 | 204 | 1 | 67 | 1.57e-29 | 110 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0672520 | AT5G22500.1 | 49.871 | 387 | 187 | 4 | 1 | 386 | 110 | 490 | 1.51e-140 | 409 |
Msa0672520 | AT3G44540.1 | 50.904 | 387 | 185 | 4 | 1 | 386 | 110 | 492 | 1.74e-140 | 409 |
Msa0672520 | AT3G44550.2 | 48.586 | 389 | 194 | 2 | 1 | 386 | 1 | 386 | 1.45e-132 | 385 |
Msa0672520 | AT3G44550.1 | 48.586 | 389 | 194 | 2 | 1 | 386 | 110 | 495 | 2.33e-131 | 386 |
Msa0672520 | AT4G33790.2 | 46.214 | 383 | 201 | 4 | 1 | 383 | 1 | 378 | 8.43e-129 | 375 |
Msa0672520 | AT4G33790.1 | 46.214 | 383 | 201 | 4 | 1 | 383 | 114 | 491 | 1.29e-127 | 376 |
Msa0672520 | AT3G44560.1 | 48.586 | 389 | 194 | 2 | 1 | 386 | 110 | 495 | 6.24e-125 | 370 |
Msa0672520 | AT5G22420.4 | 46.113 | 373 | 194 | 6 | 1 | 373 | 1 | 366 | 3.89e-119 | 350 |
Msa0672520 | AT5G22420.1 | 44.142 | 367 | 198 | 6 | 7 | 373 | 43 | 402 | 3.02e-110 | 329 |
Msa0672520 | AT5G22420.3 | 45.070 | 355 | 188 | 6 | 19 | 373 | 3 | 350 | 6.06e-109 | 324 |
Msa0672520 | AT5G22420.6 | 45.070 | 355 | 188 | 6 | 19 | 373 | 3 | 350 | 6.06e-109 | 324 |
Msa0672520 | AT5G22500.2 | 50.680 | 294 | 139 | 3 | 1 | 294 | 110 | 397 | 4.35e-108 | 323 |
Msa0672520 | AT3G44560.3 | 48.961 | 337 | 169 | 1 | 1 | 337 | 110 | 443 | 1.50e-106 | 321 |
Msa0672520 | AT3G44560.2 | 50.169 | 295 | 144 | 1 | 1 | 295 | 110 | 401 | 1.79e-95 | 291 |
Msa0672520 | AT5G22420.5 | 44.062 | 320 | 172 | 6 | 54 | 373 | 3 | 315 | 8.77e-92 | 279 |
Msa0672520 | AT5G22420.2 | 43.771 | 297 | 164 | 3 | 77 | 373 | 3 | 296 | 6.56e-88 | 268 |
Msa0672520 | AT5G22420.7 | 43.771 | 297 | 164 | 3 | 77 | 373 | 3 | 296 | 6.56e-88 | 268 |
Msa0672520 | AT3G11980.1 | 37.940 | 398 | 220 | 10 | 3 | 386 | 229 | 613 | 2.79e-80 | 258 |
Msa0672520 | AT3G44540.2 | 55.825 | 206 | 87 | 2 | 1 | 206 | 110 | 311 | 7.09e-80 | 248 |
Msa0672520 | AT3G44540.3 | 55.825 | 206 | 87 | 2 | 1 | 206 | 110 | 311 | 7.09e-80 | 248 |
Msa0672520 | AT3G56700.2 | 33.681 | 383 | 226 | 8 | 3 | 382 | 182 | 539 | 2.88e-64 | 214 |
Msa0672520 | AT3G56700.1 | 31.593 | 383 | 213 | 9 | 3 | 382 | 182 | 518 | 3.80e-53 | 184 |
Find 86 sgRNAs with CRISPR-Local
Find 358 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATAGAAATTTCCAGCCATTT+TGG | 0.174184 | 4_4:-17592004 | None:intergenic |
TATATTCAAGGTCTTAAATT+TGG | 0.180226 | 4_4:+17591588 | Msa0672520:intron |
ACACTTCATATTTGGATAAT+AGG | 0.192277 | 4_4:-17592080 | None:intergenic |
ATGTTTCTACACTTCATATT+TGG | 0.201055 | 4_4:-17592088 | None:intergenic |
GTGGACAAGGACCTTCATTT+TGG | 0.201357 | 4_4:-17585723 | None:intergenic |
TTGACCCGATTAGCATTAAT+TGG | 0.205325 | 4_4:+17591904 | Msa0672520:CDS |
TAATCACCTTTCATCAAAAT+TGG | 0.225214 | 4_4:-17585299 | None:intergenic |
ATACGAACACGGAAAATTTA+AGG | 0.283879 | 4_4:+17591838 | Msa0672520:CDS |
TGTTTCAAAAGTATTTAAAA+AGG | 0.290161 | 4_4:+17592132 | Msa0672520:three_prime_UTR |
TGTTTGAAAAGTATTCAAAA+TGG | 0.294267 | 4_4:+17592038 | Msa0672520:three_prime_UTR |
CTGGGATTACCAAGAAAATA+TGG | 0.306717 | 4_4:-17590213 | None:intergenic |
TTTGTCCAATTAATGCTAAT+CGG | 0.324881 | 4_4:-17591909 | None:intergenic |
AATTATTTACTACCCCAAAA+TGG | 0.331678 | 4_4:+17591990 | Msa0672520:three_prime_UTR |
TATGTAGATACCTGCAGATT+TGG | 0.336833 | 4_4:+17590724 | Msa0672520:intron |
ATTCCCTTGGAAACGACTAT+TGG | 0.353883 | 4_4:-17590914 | None:intergenic |
CCGTTTCCTGGTTGGATTGA+AGG | 0.357677 | 4_4:+17589312 | Msa0672520:CDS |
ATGTCTTAAACATCGCAAAA+AGG | 0.363896 | 4_4:+17585696 | Msa0672520:CDS |
ACAAGCAAAGATCCGTTTCC+TGG | 0.377539 | 4_4:+17589300 | Msa0672520:CDS |
TTGGCTTCCCATCTTTGTTT+AGG | 0.410010 | 4_4:-17590895 | None:intergenic |
GGGAATTGCCTTGAAAAGTA+TGG | 0.413041 | 4_4:+17590931 | Msa0672520:CDS |
TACGATATCTAAAATTGTCC+TGG | 0.424094 | 4_4:-17590232 | None:intergenic |
TTTGTGAATACATATGTGTT+TGG | 0.427147 | 4_4:-17589198 | None:intergenic |
AGTTATCATCATAAACATCT+TGG | 0.434245 | 4_4:-17591636 | None:intergenic |
TAATTCTAGCTTATGTGTGC+GGG | 0.446461 | 4_4:+17588851 | Msa0672520:intron |
ATGATGAATACGCACATTCC+TGG | 0.447431 | 4_4:+17591936 | Msa0672520:CDS |
ACACACAGAAATGAATTTGC+TGG | 0.449134 | 4_4:+17588960 | Msa0672520:CDS |
TTAGAGCAAATTTGCATGGT+TGG | 0.450318 | 4_4:+17589175 | Msa0672520:intron |
CATAAACATCTTGGAAGGAA+TGG | 0.454109 | 4_4:-17591627 | None:intergenic |
ACTCCTTGCCTAAACAAAGA+TGG | 0.462744 | 4_4:+17590887 | Msa0672520:CDS |
TGATATGTGCCTATGGTAAA+GGG | 0.463507 | 4_4:+17590184 | Msa0672520:CDS |
ATTTACTACCCCAAAATGGC+TGG | 0.464914 | 4_4:+17591994 | Msa0672520:three_prime_UTR |
TTCCCATCTTTGTTTAGGCA+AGG | 0.468942 | 4_4:-17590890 | None:intergenic |
TTGTCCAATTAATGCTAATC+GGG | 0.470692 | 4_4:-17591908 | None:intergenic |
GATTGACGACCCATCTCAAA+TGG | 0.474980 | 4_4:-17588910 | None:intergenic |
ATGATATGTGCCTATGGTAA+AGG | 0.478427 | 4_4:+17590183 | Msa0672520:CDS |
TTATGTGTGCGGGGAGACTA+AGG | 0.481843 | 4_4:+17588861 | Msa0672520:CDS |
CTGGTTGGATTGAAGGTCAA+AGG | 0.485153 | 4_4:+17589319 | Msa0672520:CDS |
CAAGAGAAACCATTTGAGAT+GGG | 0.491438 | 4_4:+17588901 | Msa0672520:CDS |
TCAAGAGAAACCATTTGAGA+TGG | 0.493054 | 4_4:+17588900 | Msa0672520:CDS |
CTCCTTGCCTAAACAAAGAT+GGG | 0.493790 | 4_4:+17590888 | Msa0672520:CDS |
GTCCTTGTCCACATATCTAC+AGG | 0.498156 | 4_4:+17585734 | Msa0672520:CDS |
CTACAGATTTGACATCTCAA+TGG | 0.499005 | 4_4:+17585649 | Msa0672520:intron |
TCAATGGGTGTTAATACAAT+GGG | 0.499396 | 4_4:+17585665 | Msa0672520:CDS |
CTTGTACTAGTTACCATCGT+TGG | 0.503449 | 4_4:-17589282 | None:intergenic |
GCAAAGATCCGTTTCCTGGT+TGG | 0.504628 | 4_4:+17589304 | Msa0672520:CDS |
TATGTATTCACAAAAGCAAT+GGG | 0.505601 | 4_4:+17589207 | Msa0672520:CDS |
CTCAATGGGTGTTAATACAA+TGG | 0.505733 | 4_4:+17585664 | Msa0672520:CDS |
AAGGGCTATAACATGGAGAA+TGG | 0.506365 | 4_4:+17591870 | Msa0672520:CDS |
TTGCAGCGGAATGGACAATA+AGG | 0.506628 | 4_4:-17585273 | None:intergenic |
TACAGATTTGACATCTCAAT+GGG | 0.511926 | 4_4:+17585650 | Msa0672520:intron |
TGGCAATTTCCCTTTACCAT+AGG | 0.514404 | 4_4:-17590193 | None:intergenic |
AAATTTAAGGAGGGCAACAA+AGG | 0.516552 | 4_4:+17591851 | Msa0672520:CDS |
AATTGGTAGTTGCAGCGGAA+TGG | 0.527290 | 4_4:-17585282 | None:intergenic |
ATCAAAATTGGTAGTTGCAG+CGG | 0.535053 | 4_4:-17585287 | None:intergenic |
CCTTCAATCCAACCAGGAAA+CGG | 0.537673 | 4_4:-17589312 | None:intergenic |
ATTGCATACTTGACGAGACC+AGG | 0.540387 | 4_4:-17591954 | None:intergenic |
GTTGGACGTATAATGATCAA+TGG | 0.544672 | 4_4:-17589264 | None:intergenic |
TTAATTCTAGCTTATGTGTG+CGG | 0.546785 | 4_4:+17588850 | Msa0672520:intron |
TCGATATGTCCTGCCACTTG+AGG | 0.547266 | 4_4:+17590979 | Msa0672520:CDS |
AAAATTAGAGCAAATTTGCA+TGG | 0.552835 | 4_4:+17589171 | Msa0672520:intron |
GATAGTATGATATGTGCCTA+TGG | 0.564664 | 4_4:+17590177 | Msa0672520:CDS |
ACGATATCTAAAATTGTCCT+GGG | 0.565879 | 4_4:-17590231 | None:intergenic |
TGGGTCGTCAATCTCTAGAA+AGG | 0.568466 | 4_4:+17588920 | Msa0672520:CDS |
TCTAACAAACCTCAAGTGGC+AGG | 0.578523 | 4_4:-17590988 | None:intergenic |
GATACTTACCTGTAGATATG+TGG | 0.578543 | 4_4:-17585742 | None:intergenic |
AATTTAAGGAGGGCAACAAA+GGG | 0.581635 | 4_4:+17591852 | Msa0672520:CDS |
GGCAACAAAGGGCTATAACA+TGG | 0.581652 | 4_4:+17591863 | Msa0672520:CDS |
CAATTGATGACCAAATCTGC+AGG | 0.583208 | 4_4:-17590734 | None:intergenic |
ATCATCATAAACATCTTGGA+AGG | 0.583944 | 4_4:-17591632 | None:intergenic |
ATATGTATTCACAAAAGCAA+TGG | 0.587895 | 4_4:+17589206 | Msa0672520:CDS |
CTTTGACCTTCAATCCAACC+AGG | 0.590282 | 4_4:-17589318 | None:intergenic |
GAAGCCAATAGTCGTTTCCA+AGG | 0.596362 | 4_4:+17590910 | Msa0672520:CDS |
CGGGGAGACTAAGGAAGGAA+AGG | 0.602288 | 4_4:+17588870 | Msa0672520:CDS |
TCGGTCTAACAAACCTCAAG+TGG | 0.615541 | 4_4:-17590992 | None:intergenic |
AATATTGATGGGAAATGCTG+TGG | 0.630210 | 4_4:-17590856 | None:intergenic |
TGAATTACAAGCAATGAATG+TGG | 0.639826 | 4_4:+17588996 | Msa0672520:CDS |
CGAACACGGAAAATTTAAGG+AGG | 0.646321 | 4_4:+17591841 | Msa0672520:CDS |
TAACTACAAGAAAATACGAA+TGG | 0.647002 | 4_4:+17591654 | Msa0672520:CDS |
TTCTTAATGAAGAAGAAACA+TGG | 0.655254 | 4_4:-17590811 | None:intergenic |
AATTCTAGCTTATGTGTGCG+GGG | 0.658485 | 4_4:+17588852 | Msa0672520:intron |
TAGCTTTGATGATACGAACA+CGG | 0.658725 | 4_4:+17591827 | Msa0672520:intron |
GTGTGCGGGGAGACTAAGGA+AGG | 0.662909 | 4_4:+17588865 | Msa0672520:CDS |
GATCATTATACGTCCAACGA+TGG | 0.666558 | 4_4:+17589269 | Msa0672520:CDS |
TACCTGTAGATATGTGGACA+AGG | 0.671648 | 4_4:-17585736 | None:intergenic |
AAGCCAATAGTCGTTTCCAA+GGG | 0.679107 | 4_4:+17590911 | Msa0672520:CDS |
GAACACGGAAAATTTAAGGA+GGG | 0.691082 | 4_4:+17591842 | Msa0672520:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AATTATTATTTTTAAATTAA+TGG | - | chr4_4:17586849-17586868 | None:intergenic | 0.0% |
!!! | TAATTATATTTTATATATAA+TGG | + | chr4_4:17590115-17590134 | Msa0672520:intron | 0.0% |
!!! | TTTTTTTTTTTTTTGACAAA+AGG | - | chr4_4:17586192-17586211 | None:intergenic | 10.0% |
!! | TTAAAAAATTTAAGAGTTTA+AGG | + | chr4_4:17586619-17586638 | Msa0672520:intron | 10.0% |
!!! | ATAAGTAAATTTTTTTTTGT+AGG | + | chr4_4:17586680-17586699 | Msa0672520:intron | 10.0% |
!!! | TAAGTAAATTTTTTTTTGTA+GGG | + | chr4_4:17586681-17586700 | Msa0672520:intron | 10.0% |
!!! | TTTTAAATTAATGGTAAAAT+TGG | - | chr4_4:17586840-17586859 | None:intergenic | 10.0% |
!! | TTATGCTTATATATTAAAAT+AGG | + | chr4_4:17588725-17588744 | Msa0672520:intron | 10.0% |
!! | TAACAAAAAAAATTAAAAAC+TGG | + | chr4_4:17588760-17588779 | Msa0672520:intron | 10.0% |
!!! | TTTTTAATAAAAGATTGATA+TGG | + | chr4_4:17589437-17589456 | Msa0672520:intron | 10.0% |
!! | CATTTATGAATAATTTATTT+GGG | - | chr4_4:17589536-17589555 | None:intergenic | 10.0% |
!! | ACATTTATGAATAATTTATT+TGG | - | chr4_4:17589537-17589556 | None:intergenic | 10.0% |
!! | TTGATAAAAAAAAAAATATG+AGG | + | chr4_4:17589932-17589951 | Msa0672520:intron | 10.0% |
!! | CTATATCAAAATTTAAATTA+AGG | + | chr4_4:17590000-17590019 | Msa0672520:intron | 10.0% |
!!! | GATATTTTCATAAAAAATAA+TGG | - | chr4_4:17590462-17590481 | None:intergenic | 10.0% |
!!! | TTAATCCTTTTAATATTTTT+TGG | + | chr4_4:17591563-17591582 | Msa0672520:intron | 10.0% |
!!! | ATGAAAATATGAATTATTTT+TGG | + | chr4_4:17591801-17591820 | Msa0672520:intron | 10.0% |
!!! | TAAGCAAAAATTCATATTTT+AGG | - | chr4_4:17585509-17585528 | None:intergenic | 15.0% |
!!! | ATGATCAATTTAATTTAACA+TGG | - | chr4_4:17585602-17585621 | None:intergenic | 15.0% |
!!! | TAATTTTTTTTCACAAGTAT+AGG | - | chr4_4:17585919-17585938 | None:intergenic | 15.0% |
!! | TACTTCTATATTATTTGTTT+CGG | - | chr4_4:17585948-17585967 | None:intergenic | 15.0% |
!! | AAAGCTATTAAAATTAAGTA+AGG | - | chr4_4:17586710-17586729 | None:intergenic | 15.0% |
!! | AAGCATAAATTAAACAAATT+TGG | - | chr4_4:17586369-17586388 | None:intergenic | 15.0% |
!!! | AATTTTTGCGATATTTTTTT+CGG | - | chr4_4:17586453-17586472 | None:intergenic | 15.0% |
!! | AAAGCTATTAAAATTAAGTA+AGG | + | chr4_4:17586710-17586729 | Msa0672520:intron | 15.0% |
!! | TAGATATGTAAGAATAAAAT+TGG | - | chr4_4:17588632-17588651 | None:intergenic | 15.0% |
!! | AAAAAAAATTAAAAACTGGA+AGG | + | chr4_4:17588764-17588783 | Msa0672520:intron | 15.0% |
!! | ACTGTATAAAATAAAAAGTA+AGG | - | chr4_4:17589100-17589119 | None:intergenic | 15.0% |
!!! | TTATTTAAGAGTTTTAAACT+TGG | - | chr4_4:17589604-17589623 | None:intergenic | 15.0% |
!! | AACTCTTAAATAATGTTATT+AGG | + | chr4_4:17589611-17589630 | Msa0672520:intron | 15.0% |
!! | ACTCTTAAATAATGTTATTA+GGG | + | chr4_4:17589612-17589631 | Msa0672520:intron | 15.0% |
!!! | ATTTTTTTTGATAGAAATGA+GGG | - | chr4_4:17589677-17589696 | None:intergenic | 15.0% |
!!! | AATTTTTTTTGATAGAAATG+AGG | - | chr4_4:17589678-17589697 | None:intergenic | 15.0% |
!! | AATATATTAAAGATAGTATG+AGG | + | chr4_4:17589854-17589873 | Msa0672520:intron | 15.0% |
!!! | ACACAAAATATTATTTTGTT+GGG | + | chr4_4:17589968-17589987 | Msa0672520:intron | 15.0% |
!! | ATATAATTAGCAACTAAAAT+AGG | - | chr4_4:17590104-17590123 | None:intergenic | 15.0% |
!! | CTTTAATCCAAAATTTAAAT+AGG | - | chr4_4:17590391-17590410 | None:intergenic | 15.0% |
!! | GCAAGTTATTTAAAAATTTA+AGG | - | chr4_4:17590590-17590609 | None:intergenic | 15.0% |
!!! | ATAAAGTAATTTTCTACATT+CGG | + | chr4_4:17591096-17591115 | Msa0672520:intron | 15.0% |
!! | TAGTGAATTAAATAATATGT+TGG | - | chr4_4:17591373-17591392 | None:intergenic | 15.0% |
!! | AAAAGGATTAATTAGTAAAA+GGG | - | chr4_4:17591554-17591573 | None:intergenic | 15.0% |
!! | TAAAAGGATTAATTAGTAAA+AGG | - | chr4_4:17591555-17591574 | None:intergenic | 15.0% |
!! | ATATGCCAAAAAATATTAAA+AGG | - | chr4_4:17591571-17591590 | None:intergenic | 15.0% |
!!! | AATTCATATTTTCATGAATA+TGG | - | chr4_4:17591796-17591815 | None:intergenic | 15.0% |
!!! | TGTTTCAAAAGTATTTAAAA+AGG | + | chr4_4:17592132-17592151 | Msa0672520:three_prime_UTR | 15.0% |
!! | CATTCAATAAATGATGTATA+CGG | + | chr4_4:17585445-17585464 | Msa0672520:intron | 20.0% |
!!! | TTTTTGCTTATAATTGTAAC+CGG | + | chr4_4:17585519-17585538 | Msa0672520:intron | 20.0% |
!!! | GTTATTTTTTTTTTCTGTCA+AGG | - | chr4_4:17585825-17585844 | None:intergenic | 20.0% |
!!! | TTTTTTTTTTTGACAAAAGG+TGG | - | chr4_4:17586189-17586208 | None:intergenic | 20.0% |
!! | TTAACCCAAAAAACATTATA+AGG | - | chr4_4:17586230-17586249 | None:intergenic | 20.0% |
!!! | TTTTGGGTTAATTATGTTTT+TGG | + | chr4_4:17586239-17586258 | Msa0672520:intron | 20.0% |
!!! | GTTTTTCAACAATTTTTTAC+AGG | + | chr4_4:17586399-17586418 | Msa0672520:intron | 20.0% |
!!! | TAACCAAAATTTATTTTAGC+AGG | + | chr4_4:17586647-17586666 | Msa0672520:intron | 20.0% |
!!! | AACCAAAATTTATTTTAGCA+GGG | + | chr4_4:17586648-17586667 | Msa0672520:intron | 20.0% |
!!! | TTTCAGCTAATTTATTTTGA+AGG | + | chr4_4:17586991-17587010 | Msa0672520:intron | 20.0% |
!! | AGTCAAAAGAAACATATATA+AGG | - | chr4_4:17587313-17587332 | None:intergenic | 20.0% |
!!! | ATCCAATTTTGATTAAAGAA+GGG | - | chr4_4:17587461-17587480 | None:intergenic | 20.0% |
!!! | AATCCAATTTTGATTAAAGA+AGG | - | chr4_4:17587462-17587481 | None:intergenic | 20.0% |
!! | AACATATATTTCTTCAACAA+CGG | - | chr4_4:17587513-17587532 | None:intergenic | 20.0% |
!! | TTCATCAATGAGAATAATTA+AGG | + | chr4_4:17587598-17587617 | Msa0672520:intron | 20.0% |
!! | ACAAATTCAATCAATGATTT+GGG | - | chr4_4:17587966-17587985 | None:intergenic | 20.0% |
!! | TACAAATTCAATCAATGATT+TGG | - | chr4_4:17587967-17587986 | None:intergenic | 20.0% |
!! | TTTCTTTCAATCTAAATAAG+TGG | - | chr4_4:17588141-17588160 | None:intergenic | 20.0% |
!! | TATTTAGATTGAAAGAAAAG+AGG | + | chr4_4:17588143-17588162 | Msa0672520:intron | 20.0% |
!! | TACTCTATTTATGTATTGTT+CGG | - | chr4_4:17588698-17588717 | None:intergenic | 20.0% |
!! | TGCTTATATATTAAAATAGG+AGG | + | chr4_4:17588728-17588747 | Msa0672520:intron | 20.0% |
!! | GCTTATATATTAAAATAGGA+GGG | + | chr4_4:17588729-17588748 | Msa0672520:intron | 20.0% |
!! | TGAAAAATTATGGAATTGAA+AGG | + | chr4_4:17589043-17589062 | Msa0672520:CDS | 20.0% |
!! | AGTAAGGAAAAAAATAAGTA+TGG | - | chr4_4:17589084-17589103 | None:intergenic | 20.0% |
!!! | AGTAACATCTTTTTTTATAG+AGG | - | chr4_4:17589510-17589529 | None:intergenic | 20.0% |
!!! | CAAATACATTGTCTTTTTTT+TGG | + | chr4_4:17589645-17589664 | Msa0672520:intron | 20.0% |
!!! | TTTTTTTTTGTCAAATAGTC+TGG | + | chr4_4:17589705-17589724 | Msa0672520:intron | 20.0% |
!! | AGCAATTAAATTAAAAACAC+AGG | - | chr4_4:17589913-17589932 | None:intergenic | 20.0% |
!!! | GACACAAAATATTATTTTGT+TGG | + | chr4_4:17589967-17589986 | Msa0672520:intron | 20.0% |
!! | AAAGAAAAATGAACTATCAA+AGG | - | chr4_4:17590333-17590352 | None:intergenic | 20.0% |
!!! | ATTGAGACCTATTTAAATTT+TGG | + | chr4_4:17590381-17590400 | Msa0672520:intron | 20.0% |
!!! | AGTTTTCATGAAATATTGAT+GGG | - | chr4_4:17590870-17590889 | None:intergenic | 20.0% |
!! | GTTGCTTCTTTAAATATTAA+TGG | + | chr4_4:17591023-17591042 | Msa0672520:intron | 20.0% |
!!! | TAAAGTAATTTTCTACATTC+GGG | + | chr4_4:17591097-17591116 | Msa0672520:intron | 20.0% |
!!! | TATTTTTTGGCATATATTCA+AGG | + | chr4_4:17591576-17591595 | Msa0672520:intron | 20.0% |
!! | TATATTCAAGGTCTTAAATT+TGG | + | chr4_4:17591588-17591607 | Msa0672520:intron | 20.0% |
!! | TAACATCTAGTAAATAGAAA+AGG | - | chr4_4:17591745-17591764 | None:intergenic | 20.0% |
!!! | TGTTTGAAAAGTATTCAAAA+TGG | + | chr4_4:17592038-17592057 | Msa0672520:three_prime_UTR | 20.0% |
! | TAATCACCTTTCATCAAAAT+TGG | - | chr4_4:17585302-17585321 | None:intergenic | 25.0% |
! | GAAAGGTGATTAAAGAATTA+AGG | + | chr4_4:17585310-17585329 | Msa0672520:intron | 25.0% |
!!! | CTCGTTTTGAAAAAAAAACA+AGG | - | chr4_4:17585351-17585370 | None:intergenic | 25.0% |
! | TATAATATATGCAAGGTTTG+AGG | - | chr4_4:17585381-17585400 | None:intergenic | 25.0% |
!!! | TACCACCTTATAATGTTTTT+TGG | + | chr4_4:17586222-17586241 | Msa0672520:intron | 25.0% |
!!! | ACCACCTTATAATGTTTTTT+GGG | + | chr4_4:17586223-17586242 | Msa0672520:intron | 25.0% |
! | AAACAAATTTGGATTGAGTA+AGG | - | chr4_4:17586358-17586377 | None:intergenic | 25.0% |
! | GTGTTAAGAACGTTATTAAA+AGG | + | chr4_4:17586423-17586442 | Msa0672520:intron | 25.0% |
! | TTTAGTAAATGAACCTTTCA+TGG | + | chr4_4:17586569-17586588 | Msa0672520:intron | 25.0% |
!! | TTAGAAGGTCACAATTTTAT+AGG | + | chr4_4:17586740-17586759 | Msa0672520:intron | 25.0% |
!! | TAGAAGGTCACAATTTTATA+GGG | + | chr4_4:17586741-17586760 | Msa0672520:intron | 25.0% |
!!! | ACATGGGTTAAATATGTTTT+TGG | - | chr4_4:17586768-17586787 | None:intergenic | 25.0% |
!! | GTAACTTGTCAAAAAAACAT+GGG | - | chr4_4:17586784-17586803 | None:intergenic | 25.0% |
!! | AGTAACTTGTCAAAAAAACA+TGG | - | chr4_4:17586785-17586804 | None:intergenic | 25.0% |
!! | TAATCTAGCTCAAAACTAAA+AGG | + | chr4_4:17586941-17586960 | Msa0672520:intron | 25.0% |
! | GTTAATAAAGAACAAGTTTG+TGG | - | chr4_4:17586971-17586990 | None:intergenic | 25.0% |
! | TACCCTTCTTTAATCAAAAT+TGG | + | chr4_4:17587456-17587475 | Msa0672520:intron | 25.0% |
! | AGGAAAGTTTATTCTAACTT+TGG | - | chr4_4:17587639-17587658 | None:intergenic | 25.0% |
! | AATGACTATTATCTCAAAGA+AGG | - | chr4_4:17587659-17587678 | None:intergenic | 25.0% |
! | AAACATCGTTAAAAACGTAA+AGG | + | chr4_4:17587817-17587836 | Msa0672520:intron | 25.0% |
! | ACGAAATCACAAAAATACAA+AGG | + | chr4_4:17588092-17588111 | Msa0672520:intron | 25.0% |
! | CGAAATCACAAAAATACAAA+GGG | + | chr4_4:17588093-17588112 | Msa0672520:intron | 25.0% |
! | AAAATAAATTCAGTTACAGC+CGG | - | chr4_4:17588291-17588310 | None:intergenic | 25.0% |
! | AAAACTTTGCATCAAGATTA+AGG | - | chr4_4:17588342-17588361 | None:intergenic | 25.0% |
! | TGTGCAGAAAATATAAGTAT+AGG | - | chr4_4:17588516-17588535 | None:intergenic | 25.0% |
! | AAGTATGCGATGAAAAATTA+TGG | + | chr4_4:17589033-17589052 | Msa0672520:CDS | 25.0% |
! | AAAATTAGAGCAAATTTGCA+TGG | + | chr4_4:17589171-17589190 | Msa0672520:intron | 25.0% |
! | TTTGTGAATACATATGTGTT+TGG | - | chr4_4:17589201-17589220 | None:intergenic | 25.0% |
! | ATATGTATTCACAAAAGCAA+TGG | + | chr4_4:17589206-17589225 | Msa0672520:CDS | 25.0% |
! | TATGTATTCACAAAAGCAAT+GGG | + | chr4_4:17589207-17589226 | Msa0672520:CDS | 25.0% |
! | AAAAGAAAACATGAACATGA+TGG | - | chr4_4:17589415-17589434 | None:intergenic | 25.0% |
! | AATGTTCAATACTTTCTTAG+AGG | + | chr4_4:17589552-17589571 | Msa0672520:intron | 25.0% |
!! | AATAATGTTATTAGGGTACT+TGG | + | chr4_4:17589619-17589638 | Msa0672520:intron | 25.0% |
! | CTTCATTTATTCATCTTAAG+AGG | - | chr4_4:17589745-17589764 | None:intergenic | 25.0% |
!! | GAGTTTGAATTCTTTTTATG+TGG | + | chr4_4:17589876-17589895 | Msa0672520:intron | 25.0% |
! | CCAAAGAGTGATAAAAAAAA+AGG | - | chr4_4:17590304-17590323 | None:intergenic | 25.0% |
!!! | CCTTTTTTTTTATCACTCTT+TGG | + | chr4_4:17590301-17590320 | Msa0672520:intron | 25.0% |
!! | ATATGCACTAGTTATTTCAA+CGG | + | chr4_4:17590655-17590674 | Msa0672520:intron | 25.0% |
!! | ACATGGTAGATGAAATTTTT+AGG | - | chr4_4:17590797-17590816 | None:intergenic | 25.0% |
! | TTCTTAATGAAGAAGAAACA+TGG | - | chr4_4:17590814-17590833 | None:intergenic | 25.0% |
!! | GAGTTTTCATGAAATATTGA+TGG | - | chr4_4:17590871-17590890 | None:intergenic | 25.0% |
! | AAAGAAGCAACTAAATCAAT+CGG | - | chr4_4:17591014-17591033 | None:intergenic | 25.0% |
!! | AAGAAAGTTCATTGGTAATT+TGG | - | chr4_4:17591339-17591358 | None:intergenic | 25.0% |
! | CTGTAAAAAAGAAAGTTCAT+TGG | - | chr4_4:17591347-17591366 | None:intergenic | 25.0% |
!!! | TTCAACACATATTTTCTAGT+TGG | + | chr4_4:17591395-17591414 | Msa0672520:intron | 25.0% |
! | TGTTTCTCACTAAATTTATG+TGG | + | chr4_4:17591430-17591449 | Msa0672520:intron | 25.0% |
!!! | TCTCAAACACACATTTTAAT+TGG | - | chr4_4:17591492-17591511 | None:intergenic | 25.0% |
! | AGTTATCATCATAAACATCT+TGG | - | chr4_4:17591639-17591658 | None:intergenic | 25.0% |
! | TAACTACAAGAAAATACGAA+TGG | + | chr4_4:17591654-17591673 | Msa0672520:CDS | 25.0% |
! | ATGAATATGGAGAAGAAAAA+TGG | - | chr4_4:17591783-17591802 | None:intergenic | 25.0% |
! | TTTGTCCAATTAATGCTAAT+CGG | - | chr4_4:17591912-17591931 | None:intergenic | 25.0% |
! | AATTATTTACTACCCCAAAA+TGG | + | chr4_4:17591990-17592009 | Msa0672520:three_prime_UTR | 25.0% |
! | ACACTTCATATTTGGATAAT+AGG | - | chr4_4:17592083-17592102 | None:intergenic | 25.0% |
!! | ATGTTTCTACACTTCATATT+TGG | - | chr4_4:17592091-17592110 | None:intergenic | 25.0% |
!! | CAACTACCAATTTTGATGAA+AGG | + | chr4_4:17585293-17585312 | Msa0672520:CDS | 30.0% |
! | GAGAGTGTATAATATATGCA+AGG | - | chr4_4:17585388-17585407 | None:intergenic | 30.0% |
TGCATATATTATACACTCTC+TGG | + | chr4_4:17585388-17585407 | Msa0672520:intron | 30.0% | |
TACAGATTTGACATCTCAAT+GGG | + | chr4_4:17585650-17585669 | Msa0672520:intron | 30.0% | |
TCAATGGGTGTTAATACAAT+GGG | + | chr4_4:17585665-17585684 | Msa0672520:CDS | 30.0% | |
ATGTCTTAAACATCGCAAAA+AGG | + | chr4_4:17585696-17585715 | Msa0672520:CDS | 30.0% | |
! | TTTTTCACAAGTATAGGACA+AGG | - | chr4_4:17585913-17585932 | None:intergenic | 30.0% |
ACCCAAAAAACATTATAAGG+TGG | - | chr4_4:17586227-17586246 | None:intergenic | 30.0% | |
AAGTAAGGACTAAACTTACA+AGG | - | chr4_4:17586282-17586301 | None:intergenic | 30.0% | |
!!! | GAGTGCAGAAATTTTTTGTA+GGG | - | chr4_4:17586326-17586345 | None:intergenic | 30.0% |
!!! | TGAGTGCAGAAATTTTTTGT+AGG | - | chr4_4:17586327-17586346 | None:intergenic | 30.0% |
!!! | TTTTGCGATATTTTTTTCGG+AGG | - | chr4_4:17586450-17586469 | None:intergenic | 30.0% |
! | GTCCCTGCTAAAATAAATTT+TGG | - | chr4_4:17586653-17586672 | None:intergenic | 30.0% |
AAGTAAGGACTAAACTTAGA+AGG | + | chr4_4:17586725-17586744 | Msa0672520:intron | 30.0% | |
TTTGAAGGTGAGAAAAACAT+AGG | + | chr4_4:17587006-17587025 | Msa0672520:intron | 30.0% | |
GAACAAGGATAAACTATATG+CGG | - | chr4_4:17587117-17587136 | None:intergenic | 30.0% | |
TATTGTAATCCCAGATTGTA+GGG | - | chr4_4:17587141-17587160 | None:intergenic | 30.0% | |
TTATTGTAATCCCAGATTGT+AGG | - | chr4_4:17587142-17587161 | None:intergenic | 30.0% | |
TAAATCTCTGCATTGAGATT+AGG | - | chr4_4:17587204-17587223 | None:intergenic | 30.0% | |
ATAGTGTTTGCACAAATTGT+AGG | + | chr4_4:17587245-17587264 | Msa0672520:intron | 30.0% | |
TGAATGTTGAGATATCTTAG+AGG | + | chr4_4:17587547-17587566 | Msa0672520:intron | 30.0% | |
GTTTATTCTAACTTTGGCAA+GGG | - | chr4_4:17587633-17587652 | None:intergenic | 30.0% | |
AGTTTATTCTAACTTTGGCA+AGG | - | chr4_4:17587634-17587653 | None:intergenic | 30.0% | |
GTCGTTGTATGATATTAACT+TGG | - | chr4_4:17587870-17587889 | None:intergenic | 30.0% | |
AAGAGGAAAAAAAGATGTAG+AGG | + | chr4_4:17588160-17588179 | Msa0672520:intron | 30.0% | |
AGAGGAAAAAAAGATGTAGA+GGG | + | chr4_4:17588161-17588180 | Msa0672520:intron | 30.0% | |
AAGAAAGTTTAGAGAGAGAT+TGG | + | chr4_4:17588240-17588259 | Msa0672520:intron | 30.0% | |
ATCAAGATTAAGGTCAATTG+AGG | - | chr4_4:17588332-17588351 | None:intergenic | 30.0% | |
TTAAGAGCTTTCAAACACTT+AGG | + | chr4_4:17588393-17588412 | Msa0672520:intron | 30.0% | |
TAAGAGCTTTCAAACACTTA+GGG | + | chr4_4:17588394-17588413 | Msa0672520:intron | 30.0% | |
AAGCATGATTGAGAACAATT+AGG | - | chr4_4:17588561-17588580 | None:intergenic | 30.0% | |
!! | TTAATTCTAGCTTATGTGTG+CGG | + | chr4_4:17588850-17588869 | Msa0672520:intron | 30.0% |
TGAATTACAAGCAATGAATG+TGG | + | chr4_4:17588996-17589015 | Msa0672520:CDS | 30.0% | |
! | GATTGAATATTTTCTCTGCT+TGG | + | chr4_4:17589382-17589401 | Msa0672520:intron | 30.0% |
! | CTTTCTTAGAGGTCTATTTT+TGG | + | chr4_4:17589563-17589582 | Msa0672520:intron | 30.0% |
!!! | TTTTTTGTCAAATAGTCTGG+TGG | + | chr4_4:17589708-17589727 | Msa0672520:intron | 30.0% |
! | TTTTTGTCAAATAGTCTGGT+GGG | + | chr4_4:17589709-17589728 | Msa0672520:intron | 30.0% |
! | GAATTCTTTTTATGTGGTTC+AGG | + | chr4_4:17589882-17589901 | Msa0672520:intron | 30.0% |
! | ACGATATCTAAAATTGTCCT+GGG | - | chr4_4:17590234-17590253 | None:intergenic | 30.0% |
! | TACGATATCTAAAATTGTCC+TGG | - | chr4_4:17590235-17590254 | None:intergenic | 30.0% |
AAATAGGTCTCAATTTACGT+GGG | - | chr4_4:17590375-17590394 | None:intergenic | 30.0% | |
TAAATAGGTCTCAATTTACG+TGG | - | chr4_4:17590376-17590395 | None:intergenic | 30.0% | |
AAGGATTGAGCTTCTTAAAT+TGG | - | chr4_4:17590571-17590590 | None:intergenic | 30.0% | |
! | TATGCACTAGTTATTTCAAC+GGG | + | chr4_4:17590656-17590675 | Msa0672520:intron | 30.0% |
! | TAATTTTCTACATTCGGGAT+AGG | + | chr4_4:17591102-17591121 | Msa0672520:intron | 30.0% |
TTTCTCCGATTTCAAAATCT+GGG | - | chr4_4:17591179-17591198 | None:intergenic | 30.0% | |
! | TTTTCTCCGATTTCAAAATC+TGG | - | chr4_4:17591180-17591199 | None:intergenic | 30.0% |
! | AGACGAAGTGGATATATTTT+TGG | + | chr4_4:17591299-17591318 | Msa0672520:intron | 30.0% |
ATCATCATAAACATCTTGGA+AGG | - | chr4_4:17591635-17591654 | None:intergenic | 30.0% | |
!! | ACTGCTTTAAAAAACACGTA+AGG | - | chr4_4:17591706-17591725 | None:intergenic | 30.0% |
ATACGAACACGGAAAATTTA+AGG | + | chr4_4:17591838-17591857 | Msa0672520:CDS | 30.0% | |
TTGTCCAATTAATGCTAATC+GGG | - | chr4_4:17591911-17591930 | None:intergenic | 30.0% | |
!! | TAGAAATTTCCAGCCATTTT+GGG | - | chr4_4:17592006-17592025 | None:intergenic | 30.0% |
! | ATAGAAATTTCCAGCCATTT+TGG | - | chr4_4:17592007-17592026 | None:intergenic | 30.0% |
! | ATCAAAATTGGTAGTTGCAG+CGG | - | chr4_4:17585290-17585309 | None:intergenic | 35.0% |
TTGCTTATAATTGTAACCGG+AGG | + | chr4_4:17585522-17585541 | Msa0672520:intron | 35.0% | |
TGCTTATAATTGTAACCGGA+GGG | + | chr4_4:17585523-17585542 | Msa0672520:intron | 35.0% | |
! | TGGAAAAGTATGAGTTGTCT+TGG | - | chr4_4:17585582-17585601 | None:intergenic | 35.0% |
CATTGAGATGTCAAATCTGT+AGG | - | chr4_4:17585651-17585670 | None:intergenic | 35.0% | |
CTACAGATTTGACATCTCAA+TGG | + | chr4_4:17585649-17585668 | Msa0672520:intron | 35.0% | |
CTCAATGGGTGTTAATACAA+TGG | + | chr4_4:17585664-17585683 | Msa0672520:CDS | 35.0% | |
!! | AAAAAGGTGTCCCAAAATGA+AGG | + | chr4_4:17585712-17585731 | Msa0672520:CDS | 35.0% |
GATACTTACCTGTAGATATG+TGG | - | chr4_4:17585745-17585764 | None:intergenic | 35.0% | |
! | TATCAATTTTTCCTCGCGAT+TGG | + | chr4_4:17586147-17586166 | Msa0672520:intron | 35.0% |
! | ATCAATTTTTCCTCGCGATT+GGG | + | chr4_4:17586148-17586167 | Msa0672520:intron | 35.0% |
! | TACAAGGTCGCAATTTTGTA+GGG | - | chr4_4:17586266-17586285 | None:intergenic | 35.0% |
! | TTACAAGGTCGCAATTTTGT+AGG | - | chr4_4:17586267-17586286 | None:intergenic | 35.0% |
! | CAAGTTTAGAACACCATGAA+AGG | - | chr4_4:17586585-17586604 | None:intergenic | 35.0% |
!!! | CTTTTGACTTTTGCTAGACA+AGG | + | chr4_4:17587324-17587343 | Msa0672520:intron | 35.0% |
TGTAAATACGTGTGTATGCT+TGG | + | chr4_4:17587414-17587433 | Msa0672520:intron | 35.0% | |
GTAAATACGTGTGTATGCTT+GGG | + | chr4_4:17587415-17587434 | Msa0672520:intron | 35.0% | |
AGATATCTCAACATTCACTC+AGG | - | chr4_4:17587544-17587563 | None:intergenic | 35.0% | |
ACTGAAGTCGATCTTTCAAT+AGG | + | chr4_4:17587991-17588010 | Msa0672520:intron | 35.0% | |
GAGGAAAAAAAGATGTAGAG+GGG | + | chr4_4:17588162-17588181 | Msa0672520:intron | 35.0% | |
ATTATCACTAGTAACAGCCA+CGG | - | chr4_4:17588814-17588833 | None:intergenic | 35.0% | |
!! | TAATTCTAGCTTATGTGTGC+GGG | + | chr4_4:17588851-17588870 | Msa0672520:intron | 35.0% |
TCAAGAGAAACCATTTGAGA+TGG | + | chr4_4:17588900-17588919 | Msa0672520:CDS | 35.0% | |
! | CAAGAGAAACCATTTGAGAT+GGG | + | chr4_4:17588901-17588920 | Msa0672520:CDS | 35.0% |
ACACACAGAAATGAATTTGC+TGG | + | chr4_4:17588960-17588979 | Msa0672520:CDS | 35.0% | |
TTAGAGCAAATTTGCATGGT+TGG | + | chr4_4:17589175-17589194 | Msa0672520:intron | 35.0% | |
GTTGGACGTATAATGATCAA+TGG | - | chr4_4:17589267-17589286 | None:intergenic | 35.0% | |
ATAGCTTAGCTTAGCTATCA+GGG | - | chr4_4:17589807-17589826 | None:intergenic | 35.0% | |
TATAGCTTAGCTTAGCTATC+AGG | - | chr4_4:17589808-17589827 | None:intergenic | 35.0% | |
GATAGTATGATATGTGCCTA+TGG | + | chr4_4:17590177-17590196 | Msa0672520:CDS | 35.0% | |
ATGATATGTGCCTATGGTAA+AGG | + | chr4_4:17590183-17590202 | Msa0672520:CDS | 35.0% | |
TGATATGTGCCTATGGTAAA+GGG | + | chr4_4:17590184-17590203 | Msa0672520:CDS | 35.0% | |
! | GGGAAATTGCCATATTTTCT+TGG | + | chr4_4:17590204-17590223 | Msa0672520:CDS | 35.0% |
CTGGGATTACCAAGAAAATA+TGG | - | chr4_4:17590216-17590235 | None:intergenic | 35.0% | |
!! | CATATTTTCTTGGTAATCCC+AGG | + | chr4_4:17590214-17590233 | Msa0672520:CDS | 35.0% |
! | ATGCACTAGTTATTTCAACG+GGG | + | chr4_4:17590657-17590676 | Msa0672520:intron | 35.0% |
TATGTAGATACCTGCAGATT+TGG | + | chr4_4:17590724-17590743 | Msa0672520:intron | 35.0% | |
! | TGGACATCAGAAATTTTGAG+AGG | - | chr4_4:17590839-17590858 | None:intergenic | 35.0% |
AATATTGATGGGAAATGCTG+TGG | - | chr4_4:17590859-17590878 | None:intergenic | 35.0% | |
! | AAAAGCAGCCATACTTTTCA+AGG | - | chr4_4:17590942-17590961 | None:intergenic | 35.0% |
CGATTTCAAAATCTGGGTAT+GGG | - | chr4_4:17591173-17591192 | None:intergenic | 35.0% | |
!!! | CCATACCCAGATTTTGAAAT+CGG | + | chr4_4:17591171-17591190 | Msa0672520:intron | 35.0% |
! | TTTTCATTGGGTTTGGGTAT+GGG | - | chr4_4:17591209-17591228 | None:intergenic | 35.0% |
! | ATTTTCATTGGGTTTGGGTA+TGG | - | chr4_4:17591210-17591229 | None:intergenic | 35.0% |
ATACCCAAACCCAATGAAAA+TGG | + | chr4_4:17591209-17591228 | Msa0672520:intron | 35.0% | |
TACCCAAACCCAATGAAAAT+GGG | + | chr4_4:17591210-17591229 | Msa0672520:intron | 35.0% | |
CATAAACATCTTGGAAGGAA+TGG | - | chr4_4:17591630-17591649 | None:intergenic | 35.0% | |
!! | TAGCTTTGATGATACGAACA+CGG | + | chr4_4:17591827-17591846 | Msa0672520:intron | 35.0% |
GAACACGGAAAATTTAAGGA+GGG | + | chr4_4:17591842-17591861 | Msa0672520:CDS | 35.0% | |
AAATTTAAGGAGGGCAACAA+AGG | + | chr4_4:17591851-17591870 | Msa0672520:CDS | 35.0% | |
AATTTAAGGAGGGCAACAAA+GGG | + | chr4_4:17591852-17591871 | Msa0672520:CDS | 35.0% | |
TTGACCCGATTAGCATTAAT+TGG | + | chr4_4:17591904-17591923 | Msa0672520:CDS | 35.0% | |
!! | AGAAATTTCCAGCCATTTTG+GGG | - | chr4_4:17592005-17592024 | None:intergenic | 35.0% |
! | TGGACAAGGACCTTCATTTT+GGG | - | chr4_4:17585725-17585744 | None:intergenic | 40.0% |
TACCTGTAGATATGTGGACA+AGG | - | chr4_4:17585739-17585758 | None:intergenic | 40.0% | |
TTGAGATTAGGAAGTCCTCT+AGG | - | chr4_4:17587192-17587211 | None:intergenic | 40.0% | |
GTGATTTCGTCGTCAAATTG+TGG | - | chr4_4:17588082-17588101 | None:intergenic | 40.0% | |
! | AGATGTAGAGGGGTGATTTT+AGG | + | chr4_4:17588172-17588191 | Msa0672520:intron | 40.0% |
! | CATCGAAGAAGAGTGGTTTT+AGG | - | chr4_4:17588209-17588228 | None:intergenic | 40.0% |
CTAAAACCACTCTTCTTCGA+TGG | + | chr4_4:17588207-17588226 | Msa0672520:intron | 40.0% | |
TCTCACTAGAAAACTAGAGC+CGG | + | chr4_4:17588269-17588288 | Msa0672520:intron | 40.0% | |
GAGCTATGTGTCATGGATAA+AGG | - | chr4_4:17588366-17588385 | None:intergenic | 40.0% | |
!! | AGGACTTTGACTTGTTACAG+AGG | + | chr4_4:17588474-17588493 | Msa0672520:intron | 40.0% |
GGTACAAAGTAGCAGATAGT+TGG | - | chr4_4:17588677-17588696 | None:intergenic | 40.0% | |
TTATCACTAGTAACAGCCAC+GGG | - | chr4_4:17588813-17588832 | None:intergenic | 40.0% | |
!! | AATTCTAGCTTATGTGTGCG+GGG | + | chr4_4:17588852-17588871 | Msa0672520:intron | 40.0% |
GATCATTATACGTCCAACGA+TGG | + | chr4_4:17589269-17589288 | Msa0672520:CDS | 40.0% | |
CTTGTACTAGTTACCATCGT+TGG | - | chr4_4:17589285-17589304 | None:intergenic | 40.0% | |
GTGAATACGAGTAGAGTTCA+AGG | + | chr4_4:17589461-17589480 | Msa0672520:intron | 40.0% | |
TGGCAATTTCCCTTTACCAT+AGG | - | chr4_4:17590196-17590215 | None:intergenic | 40.0% | |
!! | ATTTACGTGGGTGTTGAGTA+CGG | - | chr4_4:17590363-17590382 | None:intergenic | 40.0% |
! | CAATTGATGACCAAATCTGC+AGG | - | chr4_4:17590737-17590756 | None:intergenic | 40.0% |
ACTCCTTGCCTAAACAAAGA+TGG | + | chr4_4:17590887-17590906 | Msa0672520:CDS | 40.0% | |
CTCCTTGCCTAAACAAAGAT+GGG | + | chr4_4:17590888-17590907 | Msa0672520:CDS | 40.0% | |
! | TTCCCATCTTTGTTTAGGCA+AGG | - | chr4_4:17590893-17590912 | None:intergenic | 40.0% |
! | TTGGCTTCCCATCTTTGTTT+AGG | - | chr4_4:17590898-17590917 | None:intergenic | 40.0% |
AAGCCAATAGTCGTTTCCAA+GGG | + | chr4_4:17590911-17590930 | Msa0672520:CDS | 40.0% | |
ATTCCCTTGGAAACGACTAT+TGG | - | chr4_4:17590917-17590936 | None:intergenic | 40.0% | |
!! | ACTTTTCAAGGCAATTCCCT+TGG | - | chr4_4:17590930-17590949 | None:intergenic | 40.0% |
GGGAATTGCCTTGAAAAGTA+TGG | + | chr4_4:17590931-17590950 | Msa0672520:CDS | 40.0% | |
ATTCGGGATAGGTTTGAGTA+TGG | + | chr4_4:17591113-17591132 | Msa0672520:intron | 40.0% | |
TTCGGGATAGGTTTGAGTAT+GGG | + | chr4_4:17591114-17591133 | Msa0672520:intron | 40.0% | |
GATAGGTTTGAGTATGGGTT+CGG | + | chr4_4:17591119-17591138 | Msa0672520:intron | 40.0% | |
ATAGGTTTGAGTATGGGTTC+GGG | + | chr4_4:17591120-17591139 | Msa0672520:intron | 40.0% | |
CCGATTTCAAAATCTGGGTA+TGG | - | chr4_4:17591174-17591193 | None:intergenic | 40.0% | |
ACCCAAACCCAATGAAAATG+GGG | + | chr4_4:17591211-17591230 | Msa0672520:intron | 40.0% | |
! | TCCCCATTTTCATTGGGTTT+GGG | - | chr4_4:17591215-17591234 | None:intergenic | 40.0% |
! | TTCCCCATTTTCATTGGGTT+TGG | - | chr4_4:17591216-17591235 | None:intergenic | 40.0% |
! | GGGTTTTCCCCATTTTCATT+GGG | - | chr4_4:17591221-17591240 | None:intergenic | 40.0% |
AAAACCCGTCAAATTGGGTT+TGG | + | chr4_4:17591234-17591253 | Msa0672520:intron | 40.0% | |
ATATCCACTTCGTCTAAGCA+TGG | - | chr4_4:17591294-17591313 | None:intergenic | 40.0% | |
! | GTGTTTGAGAGTGCATTGAT+AGG | + | chr4_4:17591502-17591521 | Msa0672520:intron | 40.0% |
CGAACACGGAAAATTTAAGG+AGG | + | chr4_4:17591841-17591860 | Msa0672520:CDS | 40.0% | |
AAGGGCTATAACATGGAGAA+TGG | + | chr4_4:17591870-17591889 | Msa0672520:CDS | 40.0% | |
ATGATGAATACGCACATTCC+TGG | + | chr4_4:17591936-17591955 | Msa0672520:CDS | 40.0% | |
ATTTACTACCCCAAAATGGC+TGG | + | chr4_4:17591994-17592013 | Msa0672520:three_prime_UTR | 40.0% | |
TTGCAGCGGAATGGACAATA+AGG | - | chr4_4:17585276-17585295 | None:intergenic | 45.0% | |
! | AATTGGTAGTTGCAGCGGAA+TGG | - | chr4_4:17585285-17585304 | None:intergenic | 45.0% |
CAGTAACAATGTACACCCTC+CGG | - | chr4_4:17585541-17585560 | None:intergenic | 45.0% | |
! | GTGGACAAGGACCTTCATTT+TGG | - | chr4_4:17585726-17585745 | None:intergenic | 45.0% |
GTCCTTGTCCACATATCTAC+AGG | + | chr4_4:17585734-17585753 | Msa0672520:CDS | 45.0% | |
ATGTTATAAGCCCAATCGCG+AGG | - | chr4_4:17586161-17586180 | None:intergenic | 45.0% | |
TCCTTGTTCACCCTACAATC+TGG | + | chr4_4:17587128-17587147 | Msa0672520:intron | 45.0% | |
CCTTGTTCACCCTACAATCT+GGG | + | chr4_4:17587129-17587148 | Msa0672520:intron | 45.0% | |
GAGTCAAATGCTTGACACAG+TGG | + | chr4_4:17587702-17587721 | Msa0672520:intron | 45.0% | |
TTTGAATTCGCGTCTTGTCG+CGG | - | chr4_4:17588030-17588049 | None:intergenic | 45.0% | |
! | GTGTTGTTAGTCGTCTTGTG+CGG | - | chr4_4:17588055-17588074 | None:intergenic | 45.0% |
CTTCATCCATCGAAGAAGAG+TGG | - | chr4_4:17588216-17588235 | None:intergenic | 45.0% | |
CACTCTTCTTCGATGGATGA+AGG | + | chr4_4:17588214-17588233 | Msa0672520:intron | 45.0% | |
CCTTAACGAGCTATGTGTCA+TGG | - | chr4_4:17588373-17588392 | None:intergenic | 45.0% | |
CCATGACACATAGCTCGTTA+AGG | + | chr4_4:17588370-17588389 | Msa0672520:intron | 45.0% | |
! | CACAAGCTTAGAGCTTTGAC+CGG | + | chr4_4:17588427-17588446 | Msa0672520:intron | 45.0% |
AAGTCAAAGCTCTGCACTAC+CGG | - | chr4_4:17588449-17588468 | None:intergenic | 45.0% | |
!! | GCAGAGCTTTGACTTGGTTT+AGG | + | chr4_4:17588454-17588473 | Msa0672520:intron | 45.0% |
TATCACTAGTAACAGCCACG+GGG | - | chr4_4:17588812-17588831 | None:intergenic | 45.0% | |
GATTGACGACCCATCTCAAA+TGG | - | chr4_4:17588913-17588932 | None:intergenic | 45.0% | |
! | TGGGTCGTCAATCTCTAGAA+AGG | + | chr4_4:17588920-17588939 | Msa0672520:CDS | 45.0% |
ACAAGCAAAGATCCGTTTCC+TGG | + | chr4_4:17589300-17589319 | Msa0672520:CDS | 45.0% | |
CCTTCAATCCAACCAGGAAA+CGG | - | chr4_4:17589315-17589334 | None:intergenic | 45.0% | |
CTTTGACCTTCAATCCAACC+AGG | - | chr4_4:17589321-17589340 | None:intergenic | 45.0% | |
CTGGTTGGATTGAAGGTCAA+AGG | + | chr4_4:17589319-17589338 | Msa0672520:CDS | 45.0% | |
GAAGCCAATAGTCGTTTCCA+AGG | + | chr4_4:17590910-17590929 | Msa0672520:CDS | 45.0% | |
TCTAACAAACCTCAAGTGGC+AGG | - | chr4_4:17590991-17591010 | None:intergenic | 45.0% | |
TCGGTCTAACAAACCTCAAG+TGG | - | chr4_4:17590995-17591014 | None:intergenic | 45.0% | |
TAGGTTTGAGTATGGGTTCG+GGG | + | chr4_4:17591121-17591140 | Msa0672520:intron | 45.0% | |
! | CGGGTTTTCCCCATTTTCAT+TGG | - | chr4_4:17591222-17591241 | None:intergenic | 45.0% |
ATGGGGAAAACCCGTCAAAT+TGG | + | chr4_4:17591228-17591247 | Msa0672520:intron | 45.0% | |
TGGGGAAAACCCGTCAAATT+GGG | + | chr4_4:17591229-17591248 | Msa0672520:intron | 45.0% | |
CGAACCAAACCCAATTTGAC+GGG | - | chr4_4:17591241-17591260 | None:intergenic | 45.0% | |
CCGAACCAAACCCAATTTGA+CGG | - | chr4_4:17591242-17591261 | None:intergenic | 45.0% | |
! | CCGTCAAATTGGGTTTGGTT+CGG | + | chr4_4:17591239-17591258 | Msa0672520:intron | 45.0% |
! | CGTCAAATTGGGTTTGGTTC+GGG | + | chr4_4:17591240-17591259 | Msa0672520:intron | 45.0% |
!! | AAATTGGGTTTGGTTCGGGT+AGG | + | chr4_4:17591244-17591263 | Msa0672520:intron | 45.0% |
GGCAACAAAGGGCTATAACA+TGG | + | chr4_4:17591863-17591882 | Msa0672520:CDS | 45.0% | |
ATTGCATACTTGACGAGACC+AGG | - | chr4_4:17591957-17591976 | None:intergenic | 45.0% | |
!!! | ATTTTTTTTATTTTTTTTCT+GGG | - | chr4_4:17585767-17585786 | None:intergenic | 5.0% |
!!! | TATTTTTTTTATTTTTTTTC+TGG | - | chr4_4:17585768-17585787 | None:intergenic | 5.0% |
!!! | TAGATTATAAATATTTTTTT+TGG | - | chr4_4:17586928-17586947 | None:intergenic | 5.0% |
!! | TATATCAAAATTTAAATTAA+GGG | + | chr4_4:17590001-17590020 | Msa0672520:intron | 5.0% |
CCCAGATTGTAGGGTGAACA+AGG | - | chr4_4:17587132-17587151 | None:intergenic | 50.0% | |
! | CAACCTAGTTCTCGACCTAG+AGG | + | chr4_4:17587174-17587193 | Msa0672520:intron | 50.0% |
AGTCCTCTAGGTCGAGAACT+AGG | - | chr4_4:17587180-17587199 | None:intergenic | 50.0% | |
GTGTATGCTTGGGTGTTCGT+AGG | + | chr4_4:17587425-17587444 | Msa0672520:intron | 50.0% | |
CACAGTGGATCTCACTAGAG+AGG | + | chr4_4:17587717-17587736 | Msa0672520:intron | 50.0% | |
! | ATCCGGAAGCATGGGCATTT+CGG | - | chr4_4:17587929-17587948 | None:intergenic | 50.0% |
! | GGTAGTGCAGAGCTTTGACT+TGG | + | chr4_4:17588448-17588467 | Msa0672520:intron | 50.0% |
TTATGTGTGCGGGGAGACTA+AGG | + | chr4_4:17588861-17588880 | Msa0672520:CDS | 50.0% | |
GCAAAGATCCGTTTCCTGGT+TGG | + | chr4_4:17589304-17589323 | Msa0672520:CDS | 50.0% | |
CCGTTTCCTGGTTGGATTGA+AGG | + | chr4_4:17589312-17589331 | Msa0672520:CDS | 50.0% | |
! | TCGATATGTCCTGCCACTTG+AGG | + | chr4_4:17590979-17590998 | Msa0672520:CDS | 50.0% |
TTTGAGTATGGGTTCGGGGT+GGG | + | chr4_4:17591125-17591144 | Msa0672520:intron | 50.0% | |
!! | TTGGTTCGGGTAGGTAACCA+CGG | + | chr4_4:17591253-17591272 | Msa0672520:intron | 50.0% |
GGCAACAAAACTCATACCCG+TGG | - | chr4_4:17591273-17591292 | None:intergenic | 50.0% | |
GTTGCCATGCTTAGACGAAG+TGG | + | chr4_4:17591287-17591306 | Msa0672520:intron | 50.0% | |
CACCGAAATGCCCATGCTTC+CGG | + | chr4_4:17587924-17587943 | Msa0672520:intron | 55.0% | |
! | CGTTGCAGATCCGGAAGCAT+GGG | - | chr4_4:17587937-17587956 | None:intergenic | 55.0% |
ACGTTGCAGATCCGGAAGCA+TGG | - | chr4_4:17587938-17587957 | None:intergenic | 55.0% | |
GGGCATCAACGTTGCAGATC+CGG | - | chr4_4:17587946-17587965 | None:intergenic | 55.0% | |
ATTTCACCTTCCCATCCCCG+TGG | + | chr4_4:17588794-17588813 | Msa0672520:intron | 55.0% | |
CTAGTAACAGCCACGGGGAT+GGG | - | chr4_4:17588807-17588826 | None:intergenic | 55.0% | |
ACTAGTAACAGCCACGGGGA+TGG | - | chr4_4:17588808-17588827 | None:intergenic | 55.0% | |
CGGGGAGACTAAGGAAGGAA+AGG | + | chr4_4:17588870-17588889 | Msa0672520:CDS | 55.0% | |
GTTTGAGTATGGGTTCGGGG+TGG | + | chr4_4:17591124-17591143 | Msa0672520:intron | 55.0% | |
CTGGGTATGGGACGAGTAAC+AGG | - | chr4_4:17591161-17591180 | None:intergenic | 55.0% | |
! | TGGTTCGGGTAGGTAACCAC+GGG | + | chr4_4:17591254-17591273 | Msa0672520:intron | 55.0% |
TAACAGCCACGGGGATGGGA+AGG | - | chr4_4:17588803-17588822 | None:intergenic | 60.0% | |
GTGTGCGGGGAGACTAAGGA+AGG | + | chr4_4:17588865-17588884 | Msa0672520:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_4 | gene | 17585254 | 17592193 | 17585254 | ID=Msa0672520;Name=Msa0672520 |
chr4_4 | mRNA | 17585254 | 17592193 | 17585254 | ID=Msa0672520-mRNA-1;Parent=Msa0672520;Name=Msa0672520-mRNA-1;_AED=0.08;_eAED=0.08;_QI=2|1|1|1|0.71|0.62|8|210|386 |
chr4_4 | exon | 17585254 | 17585314 | 17585254 | ID=Msa0672520-mRNA-1:exon:5157;Parent=Msa0672520-mRNA-1 |
chr4_4 | exon | 17585655 | 17585755 | 17585655 | ID=Msa0672520-mRNA-1:exon:5158;Parent=Msa0672520-mRNA-1 |
chr4_4 | exon | 17588860 | 17589064 | 17588860 | ID=Msa0672520-mRNA-1:exon:5159;Parent=Msa0672520-mRNA-1 |
chr4_4 | exon | 17589179 | 17589340 | 17589179 | ID=Msa0672520-mRNA-1:exon:5160;Parent=Msa0672520-mRNA-1 |
chr4_4 | exon | 17590170 | 17590251 | 17590170 | ID=Msa0672520-mRNA-1:exon:5161;Parent=Msa0672520-mRNA-1 |
chr4_4 | exon | 17590731 | 17591000 | 17590731 | ID=Msa0672520-mRNA-1:exon:5162;Parent=Msa0672520-mRNA-1 |
chr4_4 | exon | 17591598 | 17591725 | 17591598 | ID=Msa0672520-mRNA-1:exon:5163;Parent=Msa0672520-mRNA-1 |
chr4_4 | exon | 17591830 | 17592193 | 17591830 | ID=Msa0672520-mRNA-1:exon:5164;Parent=Msa0672520-mRNA-1 |
chr4_4 | five_prime_UTR | 17585254 | 17585255 | 17585254 | ID=Msa0672520-mRNA-1:five_prime_utr;Parent=Msa0672520-mRNA-1 |
chr4_4 | CDS | 17585256 | 17585314 | 17585256 | ID=Msa0672520-mRNA-1:cds;Parent=Msa0672520-mRNA-1 |
chr4_4 | CDS | 17585655 | 17585755 | 17585655 | ID=Msa0672520-mRNA-1:cds;Parent=Msa0672520-mRNA-1 |
chr4_4 | CDS | 17588860 | 17589064 | 17588860 | ID=Msa0672520-mRNA-1:cds;Parent=Msa0672520-mRNA-1 |
chr4_4 | CDS | 17589179 | 17589340 | 17589179 | ID=Msa0672520-mRNA-1:cds;Parent=Msa0672520-mRNA-1 |
chr4_4 | CDS | 17590170 | 17590251 | 17590170 | ID=Msa0672520-mRNA-1:cds;Parent=Msa0672520-mRNA-1 |
chr4_4 | CDS | 17590731 | 17591000 | 17590731 | ID=Msa0672520-mRNA-1:cds;Parent=Msa0672520-mRNA-1 |
chr4_4 | CDS | 17591598 | 17591725 | 17591598 | ID=Msa0672520-mRNA-1:cds;Parent=Msa0672520-mRNA-1 |
chr4_4 | CDS | 17591830 | 17591983 | 17591830 | ID=Msa0672520-mRNA-1:cds;Parent=Msa0672520-mRNA-1 |
chr4_4 | three_prime_UTR | 17591984 | 17592193 | 17591984 | ID=Msa0672520-mRNA-1:three_prime_utr;Parent=Msa0672520-mRNA-1 |
Gene Sequence |
Protein sequence |