AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0672520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0672520 MtrunA17_Chr4g0026711 92.746 386 28 0 1 386 110 495 0.0 758
Msa0672520 MtrunA17_Chr4g0026771 72.093 387 106 2 1 386 107 492 0.0 563
Msa0672520 MtrunA17_Chr4g0026691 50.653 383 185 2 4 386 113 491 4.49e-138 402
Msa0672520 MtrunA17_Chr2g0321201 49.608 383 188 4 4 386 115 492 3.51e-136 398
Msa0672520 MtrunA17_Chr4g0026701 48.964 386 193 2 1 386 111 492 2.71e-135 395
Msa0672520 MtrunA17_Chr2g0321181 48.303 383 194 2 4 386 113 491 3.82e-132 387
Msa0672520 MtrunA17_Chr5g0419501 64.626 294 49 4 1 294 110 348 5.51e-121 354
Msa0672520 MtrunA17_Chr6g0465391 48.187 386 165 6 1 386 110 460 5.95e-120 355
Msa0672520 MtrunA17_Chr4g0026911 69.730 185 54 2 204 386 3 187 1.16e-90 271
Msa0672520 MtrunA17_Chr1g0176054 35.516 397 230 9 3 386 225 608 7.44e-81 259
Msa0672520 MtrunA17_Chr5g0431281 63.587 184 65 2 204 386 28 210 8.97e-76 233
Msa0672520 MtrunA17_Chr5g0431251 75.781 128 31 0 77 204 3 130 1.88e-68 213
Msa0672520 MtrunA17_Chr5g0419491 89.362 94 10 0 293 386 7 100 9.10e-56 178
Msa0672520 MtrunA17_Chr4g0026891 68.293 123 37 2 1 122 107 228 2.36e-51 173
Msa0672520 MtrunA17_Chr5g0431261 59.341 91 37 0 204 294 3 93 1.29e-32 117
Msa0672520 MtrunA17_Chr4g0026901 86.207 58 8 0 122 179 16 73 9.59e-32 115
Msa0672520 MtrunA17_Chr6g0465381 49.640 139 70 0 138 276 1 139 1.15e-31 118
Msa0672520 MtrunA17_Chr5g0431271 73.134 67 18 0 138 204 1 67 1.57e-29 110
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0672520 AT5G22500.1 49.871 387 187 4 1 386 110 490 1.51e-140 409
Msa0672520 AT3G44540.1 50.904 387 185 4 1 386 110 492 1.74e-140 409
Msa0672520 AT3G44550.2 48.586 389 194 2 1 386 1 386 1.45e-132 385
Msa0672520 AT3G44550.1 48.586 389 194 2 1 386 110 495 2.33e-131 386
Msa0672520 AT4G33790.2 46.214 383 201 4 1 383 1 378 8.43e-129 375
Msa0672520 AT4G33790.1 46.214 383 201 4 1 383 114 491 1.29e-127 376
Msa0672520 AT3G44560.1 48.586 389 194 2 1 386 110 495 6.24e-125 370
Msa0672520 AT5G22420.4 46.113 373 194 6 1 373 1 366 3.89e-119 350
Msa0672520 AT5G22420.1 44.142 367 198 6 7 373 43 402 3.02e-110 329
Msa0672520 AT5G22420.3 45.070 355 188 6 19 373 3 350 6.06e-109 324
Msa0672520 AT5G22420.6 45.070 355 188 6 19 373 3 350 6.06e-109 324
Msa0672520 AT5G22500.2 50.680 294 139 3 1 294 110 397 4.35e-108 323
Msa0672520 AT3G44560.3 48.961 337 169 1 1 337 110 443 1.50e-106 321
Msa0672520 AT3G44560.2 50.169 295 144 1 1 295 110 401 1.79e-95 291
Msa0672520 AT5G22420.5 44.062 320 172 6 54 373 3 315 8.77e-92 279
Msa0672520 AT5G22420.2 43.771 297 164 3 77 373 3 296 6.56e-88 268
Msa0672520 AT5G22420.7 43.771 297 164 3 77 373 3 296 6.56e-88 268
Msa0672520 AT3G11980.1 37.940 398 220 10 3 386 229 613 2.79e-80 258
Msa0672520 AT3G44540.2 55.825 206 87 2 1 206 110 311 7.09e-80 248
Msa0672520 AT3G44540.3 55.825 206 87 2 1 206 110 311 7.09e-80 248
Msa0672520 AT3G56700.2 33.681 383 226 8 3 382 182 539 2.88e-64 214
Msa0672520 AT3G56700.1 31.593 383 213 9 3 382 182 518 3.80e-53 184

Find 86 sgRNAs with CRISPR-Local

Find 358 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAGAAATTTCCAGCCATTT+TGG 0.174184 4_4:-17592004 None:intergenic
TATATTCAAGGTCTTAAATT+TGG 0.180226 4_4:+17591588 Msa0672520:intron
ACACTTCATATTTGGATAAT+AGG 0.192277 4_4:-17592080 None:intergenic
ATGTTTCTACACTTCATATT+TGG 0.201055 4_4:-17592088 None:intergenic
GTGGACAAGGACCTTCATTT+TGG 0.201357 4_4:-17585723 None:intergenic
TTGACCCGATTAGCATTAAT+TGG 0.205325 4_4:+17591904 Msa0672520:CDS
TAATCACCTTTCATCAAAAT+TGG 0.225214 4_4:-17585299 None:intergenic
ATACGAACACGGAAAATTTA+AGG 0.283879 4_4:+17591838 Msa0672520:CDS
TGTTTCAAAAGTATTTAAAA+AGG 0.290161 4_4:+17592132 Msa0672520:three_prime_UTR
TGTTTGAAAAGTATTCAAAA+TGG 0.294267 4_4:+17592038 Msa0672520:three_prime_UTR
CTGGGATTACCAAGAAAATA+TGG 0.306717 4_4:-17590213 None:intergenic
TTTGTCCAATTAATGCTAAT+CGG 0.324881 4_4:-17591909 None:intergenic
AATTATTTACTACCCCAAAA+TGG 0.331678 4_4:+17591990 Msa0672520:three_prime_UTR
TATGTAGATACCTGCAGATT+TGG 0.336833 4_4:+17590724 Msa0672520:intron
ATTCCCTTGGAAACGACTAT+TGG 0.353883 4_4:-17590914 None:intergenic
CCGTTTCCTGGTTGGATTGA+AGG 0.357677 4_4:+17589312 Msa0672520:CDS
ATGTCTTAAACATCGCAAAA+AGG 0.363896 4_4:+17585696 Msa0672520:CDS
ACAAGCAAAGATCCGTTTCC+TGG 0.377539 4_4:+17589300 Msa0672520:CDS
TTGGCTTCCCATCTTTGTTT+AGG 0.410010 4_4:-17590895 None:intergenic
GGGAATTGCCTTGAAAAGTA+TGG 0.413041 4_4:+17590931 Msa0672520:CDS
TACGATATCTAAAATTGTCC+TGG 0.424094 4_4:-17590232 None:intergenic
TTTGTGAATACATATGTGTT+TGG 0.427147 4_4:-17589198 None:intergenic
AGTTATCATCATAAACATCT+TGG 0.434245 4_4:-17591636 None:intergenic
TAATTCTAGCTTATGTGTGC+GGG 0.446461 4_4:+17588851 Msa0672520:intron
ATGATGAATACGCACATTCC+TGG 0.447431 4_4:+17591936 Msa0672520:CDS
ACACACAGAAATGAATTTGC+TGG 0.449134 4_4:+17588960 Msa0672520:CDS
TTAGAGCAAATTTGCATGGT+TGG 0.450318 4_4:+17589175 Msa0672520:intron
CATAAACATCTTGGAAGGAA+TGG 0.454109 4_4:-17591627 None:intergenic
ACTCCTTGCCTAAACAAAGA+TGG 0.462744 4_4:+17590887 Msa0672520:CDS
TGATATGTGCCTATGGTAAA+GGG 0.463507 4_4:+17590184 Msa0672520:CDS
ATTTACTACCCCAAAATGGC+TGG 0.464914 4_4:+17591994 Msa0672520:three_prime_UTR
TTCCCATCTTTGTTTAGGCA+AGG 0.468942 4_4:-17590890 None:intergenic
TTGTCCAATTAATGCTAATC+GGG 0.470692 4_4:-17591908 None:intergenic
GATTGACGACCCATCTCAAA+TGG 0.474980 4_4:-17588910 None:intergenic
ATGATATGTGCCTATGGTAA+AGG 0.478427 4_4:+17590183 Msa0672520:CDS
TTATGTGTGCGGGGAGACTA+AGG 0.481843 4_4:+17588861 Msa0672520:CDS
CTGGTTGGATTGAAGGTCAA+AGG 0.485153 4_4:+17589319 Msa0672520:CDS
CAAGAGAAACCATTTGAGAT+GGG 0.491438 4_4:+17588901 Msa0672520:CDS
TCAAGAGAAACCATTTGAGA+TGG 0.493054 4_4:+17588900 Msa0672520:CDS
CTCCTTGCCTAAACAAAGAT+GGG 0.493790 4_4:+17590888 Msa0672520:CDS
GTCCTTGTCCACATATCTAC+AGG 0.498156 4_4:+17585734 Msa0672520:CDS
CTACAGATTTGACATCTCAA+TGG 0.499005 4_4:+17585649 Msa0672520:intron
TCAATGGGTGTTAATACAAT+GGG 0.499396 4_4:+17585665 Msa0672520:CDS
CTTGTACTAGTTACCATCGT+TGG 0.503449 4_4:-17589282 None:intergenic
GCAAAGATCCGTTTCCTGGT+TGG 0.504628 4_4:+17589304 Msa0672520:CDS
TATGTATTCACAAAAGCAAT+GGG 0.505601 4_4:+17589207 Msa0672520:CDS
CTCAATGGGTGTTAATACAA+TGG 0.505733 4_4:+17585664 Msa0672520:CDS
AAGGGCTATAACATGGAGAA+TGG 0.506365 4_4:+17591870 Msa0672520:CDS
TTGCAGCGGAATGGACAATA+AGG 0.506628 4_4:-17585273 None:intergenic
TACAGATTTGACATCTCAAT+GGG 0.511926 4_4:+17585650 Msa0672520:intron
TGGCAATTTCCCTTTACCAT+AGG 0.514404 4_4:-17590193 None:intergenic
AAATTTAAGGAGGGCAACAA+AGG 0.516552 4_4:+17591851 Msa0672520:CDS
AATTGGTAGTTGCAGCGGAA+TGG 0.527290 4_4:-17585282 None:intergenic
ATCAAAATTGGTAGTTGCAG+CGG 0.535053 4_4:-17585287 None:intergenic
CCTTCAATCCAACCAGGAAA+CGG 0.537673 4_4:-17589312 None:intergenic
ATTGCATACTTGACGAGACC+AGG 0.540387 4_4:-17591954 None:intergenic
GTTGGACGTATAATGATCAA+TGG 0.544672 4_4:-17589264 None:intergenic
TTAATTCTAGCTTATGTGTG+CGG 0.546785 4_4:+17588850 Msa0672520:intron
TCGATATGTCCTGCCACTTG+AGG 0.547266 4_4:+17590979 Msa0672520:CDS
AAAATTAGAGCAAATTTGCA+TGG 0.552835 4_4:+17589171 Msa0672520:intron
GATAGTATGATATGTGCCTA+TGG 0.564664 4_4:+17590177 Msa0672520:CDS
ACGATATCTAAAATTGTCCT+GGG 0.565879 4_4:-17590231 None:intergenic
TGGGTCGTCAATCTCTAGAA+AGG 0.568466 4_4:+17588920 Msa0672520:CDS
TCTAACAAACCTCAAGTGGC+AGG 0.578523 4_4:-17590988 None:intergenic
GATACTTACCTGTAGATATG+TGG 0.578543 4_4:-17585742 None:intergenic
AATTTAAGGAGGGCAACAAA+GGG 0.581635 4_4:+17591852 Msa0672520:CDS
GGCAACAAAGGGCTATAACA+TGG 0.581652 4_4:+17591863 Msa0672520:CDS
CAATTGATGACCAAATCTGC+AGG 0.583208 4_4:-17590734 None:intergenic
ATCATCATAAACATCTTGGA+AGG 0.583944 4_4:-17591632 None:intergenic
ATATGTATTCACAAAAGCAA+TGG 0.587895 4_4:+17589206 Msa0672520:CDS
CTTTGACCTTCAATCCAACC+AGG 0.590282 4_4:-17589318 None:intergenic
GAAGCCAATAGTCGTTTCCA+AGG 0.596362 4_4:+17590910 Msa0672520:CDS
CGGGGAGACTAAGGAAGGAA+AGG 0.602288 4_4:+17588870 Msa0672520:CDS
TCGGTCTAACAAACCTCAAG+TGG 0.615541 4_4:-17590992 None:intergenic
AATATTGATGGGAAATGCTG+TGG 0.630210 4_4:-17590856 None:intergenic
TGAATTACAAGCAATGAATG+TGG 0.639826 4_4:+17588996 Msa0672520:CDS
CGAACACGGAAAATTTAAGG+AGG 0.646321 4_4:+17591841 Msa0672520:CDS
TAACTACAAGAAAATACGAA+TGG 0.647002 4_4:+17591654 Msa0672520:CDS
TTCTTAATGAAGAAGAAACA+TGG 0.655254 4_4:-17590811 None:intergenic
AATTCTAGCTTATGTGTGCG+GGG 0.658485 4_4:+17588852 Msa0672520:intron
TAGCTTTGATGATACGAACA+CGG 0.658725 4_4:+17591827 Msa0672520:intron
GTGTGCGGGGAGACTAAGGA+AGG 0.662909 4_4:+17588865 Msa0672520:CDS
GATCATTATACGTCCAACGA+TGG 0.666558 4_4:+17589269 Msa0672520:CDS
TACCTGTAGATATGTGGACA+AGG 0.671648 4_4:-17585736 None:intergenic
AAGCCAATAGTCGTTTCCAA+GGG 0.679107 4_4:+17590911 Msa0672520:CDS
GAACACGGAAAATTTAAGGA+GGG 0.691082 4_4:+17591842 Msa0672520:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTATTATTTTTAAATTAA+TGG - chr4_4:17586849-17586868 None:intergenic 0.0%
!!! TAATTATATTTTATATATAA+TGG + chr4_4:17590115-17590134 Msa0672520:intron 0.0%
!!! TTTTTTTTTTTTTTGACAAA+AGG - chr4_4:17586192-17586211 None:intergenic 10.0%
!! TTAAAAAATTTAAGAGTTTA+AGG + chr4_4:17586619-17586638 Msa0672520:intron 10.0%
!!! ATAAGTAAATTTTTTTTTGT+AGG + chr4_4:17586680-17586699 Msa0672520:intron 10.0%
!!! TAAGTAAATTTTTTTTTGTA+GGG + chr4_4:17586681-17586700 Msa0672520:intron 10.0%
!!! TTTTAAATTAATGGTAAAAT+TGG - chr4_4:17586840-17586859 None:intergenic 10.0%
!! TTATGCTTATATATTAAAAT+AGG + chr4_4:17588725-17588744 Msa0672520:intron 10.0%
!! TAACAAAAAAAATTAAAAAC+TGG + chr4_4:17588760-17588779 Msa0672520:intron 10.0%
!!! TTTTTAATAAAAGATTGATA+TGG + chr4_4:17589437-17589456 Msa0672520:intron 10.0%
!! CATTTATGAATAATTTATTT+GGG - chr4_4:17589536-17589555 None:intergenic 10.0%
!! ACATTTATGAATAATTTATT+TGG - chr4_4:17589537-17589556 None:intergenic 10.0%
!! TTGATAAAAAAAAAAATATG+AGG + chr4_4:17589932-17589951 Msa0672520:intron 10.0%
!! CTATATCAAAATTTAAATTA+AGG + chr4_4:17590000-17590019 Msa0672520:intron 10.0%
!!! GATATTTTCATAAAAAATAA+TGG - chr4_4:17590462-17590481 None:intergenic 10.0%
!!! TTAATCCTTTTAATATTTTT+TGG + chr4_4:17591563-17591582 Msa0672520:intron 10.0%
!!! ATGAAAATATGAATTATTTT+TGG + chr4_4:17591801-17591820 Msa0672520:intron 10.0%
!!! TAAGCAAAAATTCATATTTT+AGG - chr4_4:17585509-17585528 None:intergenic 15.0%
!!! ATGATCAATTTAATTTAACA+TGG - chr4_4:17585602-17585621 None:intergenic 15.0%
!!! TAATTTTTTTTCACAAGTAT+AGG - chr4_4:17585919-17585938 None:intergenic 15.0%
!! TACTTCTATATTATTTGTTT+CGG - chr4_4:17585948-17585967 None:intergenic 15.0%
!! AAAGCTATTAAAATTAAGTA+AGG - chr4_4:17586710-17586729 None:intergenic 15.0%
!! AAGCATAAATTAAACAAATT+TGG - chr4_4:17586369-17586388 None:intergenic 15.0%
!!! AATTTTTGCGATATTTTTTT+CGG - chr4_4:17586453-17586472 None:intergenic 15.0%
!! AAAGCTATTAAAATTAAGTA+AGG + chr4_4:17586710-17586729 Msa0672520:intron 15.0%
!! TAGATATGTAAGAATAAAAT+TGG - chr4_4:17588632-17588651 None:intergenic 15.0%
!! AAAAAAAATTAAAAACTGGA+AGG + chr4_4:17588764-17588783 Msa0672520:intron 15.0%
!! ACTGTATAAAATAAAAAGTA+AGG - chr4_4:17589100-17589119 None:intergenic 15.0%
!!! TTATTTAAGAGTTTTAAACT+TGG - chr4_4:17589604-17589623 None:intergenic 15.0%
!! AACTCTTAAATAATGTTATT+AGG + chr4_4:17589611-17589630 Msa0672520:intron 15.0%
!! ACTCTTAAATAATGTTATTA+GGG + chr4_4:17589612-17589631 Msa0672520:intron 15.0%
!!! ATTTTTTTTGATAGAAATGA+GGG - chr4_4:17589677-17589696 None:intergenic 15.0%
!!! AATTTTTTTTGATAGAAATG+AGG - chr4_4:17589678-17589697 None:intergenic 15.0%
!! AATATATTAAAGATAGTATG+AGG + chr4_4:17589854-17589873 Msa0672520:intron 15.0%
!!! ACACAAAATATTATTTTGTT+GGG + chr4_4:17589968-17589987 Msa0672520:intron 15.0%
!! ATATAATTAGCAACTAAAAT+AGG - chr4_4:17590104-17590123 None:intergenic 15.0%
!! CTTTAATCCAAAATTTAAAT+AGG - chr4_4:17590391-17590410 None:intergenic 15.0%
!! GCAAGTTATTTAAAAATTTA+AGG - chr4_4:17590590-17590609 None:intergenic 15.0%
!!! ATAAAGTAATTTTCTACATT+CGG + chr4_4:17591096-17591115 Msa0672520:intron 15.0%
!! TAGTGAATTAAATAATATGT+TGG - chr4_4:17591373-17591392 None:intergenic 15.0%
!! AAAAGGATTAATTAGTAAAA+GGG - chr4_4:17591554-17591573 None:intergenic 15.0%
!! TAAAAGGATTAATTAGTAAA+AGG - chr4_4:17591555-17591574 None:intergenic 15.0%
!! ATATGCCAAAAAATATTAAA+AGG - chr4_4:17591571-17591590 None:intergenic 15.0%
!!! AATTCATATTTTCATGAATA+TGG - chr4_4:17591796-17591815 None:intergenic 15.0%
!!! TGTTTCAAAAGTATTTAAAA+AGG + chr4_4:17592132-17592151 Msa0672520:three_prime_UTR 15.0%
!! CATTCAATAAATGATGTATA+CGG + chr4_4:17585445-17585464 Msa0672520:intron 20.0%
!!! TTTTTGCTTATAATTGTAAC+CGG + chr4_4:17585519-17585538 Msa0672520:intron 20.0%
!!! GTTATTTTTTTTTTCTGTCA+AGG - chr4_4:17585825-17585844 None:intergenic 20.0%
!!! TTTTTTTTTTTGACAAAAGG+TGG - chr4_4:17586189-17586208 None:intergenic 20.0%
!! TTAACCCAAAAAACATTATA+AGG - chr4_4:17586230-17586249 None:intergenic 20.0%
!!! TTTTGGGTTAATTATGTTTT+TGG + chr4_4:17586239-17586258 Msa0672520:intron 20.0%
!!! GTTTTTCAACAATTTTTTAC+AGG + chr4_4:17586399-17586418 Msa0672520:intron 20.0%
!!! TAACCAAAATTTATTTTAGC+AGG + chr4_4:17586647-17586666 Msa0672520:intron 20.0%
!!! AACCAAAATTTATTTTAGCA+GGG + chr4_4:17586648-17586667 Msa0672520:intron 20.0%
!!! TTTCAGCTAATTTATTTTGA+AGG + chr4_4:17586991-17587010 Msa0672520:intron 20.0%
!! AGTCAAAAGAAACATATATA+AGG - chr4_4:17587313-17587332 None:intergenic 20.0%
!!! ATCCAATTTTGATTAAAGAA+GGG - chr4_4:17587461-17587480 None:intergenic 20.0%
!!! AATCCAATTTTGATTAAAGA+AGG - chr4_4:17587462-17587481 None:intergenic 20.0%
!! AACATATATTTCTTCAACAA+CGG - chr4_4:17587513-17587532 None:intergenic 20.0%
!! TTCATCAATGAGAATAATTA+AGG + chr4_4:17587598-17587617 Msa0672520:intron 20.0%
!! ACAAATTCAATCAATGATTT+GGG - chr4_4:17587966-17587985 None:intergenic 20.0%
!! TACAAATTCAATCAATGATT+TGG - chr4_4:17587967-17587986 None:intergenic 20.0%
!! TTTCTTTCAATCTAAATAAG+TGG - chr4_4:17588141-17588160 None:intergenic 20.0%
!! TATTTAGATTGAAAGAAAAG+AGG + chr4_4:17588143-17588162 Msa0672520:intron 20.0%
!! TACTCTATTTATGTATTGTT+CGG - chr4_4:17588698-17588717 None:intergenic 20.0%
!! TGCTTATATATTAAAATAGG+AGG + chr4_4:17588728-17588747 Msa0672520:intron 20.0%
!! GCTTATATATTAAAATAGGA+GGG + chr4_4:17588729-17588748 Msa0672520:intron 20.0%
!! TGAAAAATTATGGAATTGAA+AGG + chr4_4:17589043-17589062 Msa0672520:CDS 20.0%
!! AGTAAGGAAAAAAATAAGTA+TGG - chr4_4:17589084-17589103 None:intergenic 20.0%
!!! AGTAACATCTTTTTTTATAG+AGG - chr4_4:17589510-17589529 None:intergenic 20.0%
!!! CAAATACATTGTCTTTTTTT+TGG + chr4_4:17589645-17589664 Msa0672520:intron 20.0%
!!! TTTTTTTTTGTCAAATAGTC+TGG + chr4_4:17589705-17589724 Msa0672520:intron 20.0%
!! AGCAATTAAATTAAAAACAC+AGG - chr4_4:17589913-17589932 None:intergenic 20.0%
!!! GACACAAAATATTATTTTGT+TGG + chr4_4:17589967-17589986 Msa0672520:intron 20.0%
!! AAAGAAAAATGAACTATCAA+AGG - chr4_4:17590333-17590352 None:intergenic 20.0%
!!! ATTGAGACCTATTTAAATTT+TGG + chr4_4:17590381-17590400 Msa0672520:intron 20.0%
!!! AGTTTTCATGAAATATTGAT+GGG - chr4_4:17590870-17590889 None:intergenic 20.0%
!! GTTGCTTCTTTAAATATTAA+TGG + chr4_4:17591023-17591042 Msa0672520:intron 20.0%
!!! TAAAGTAATTTTCTACATTC+GGG + chr4_4:17591097-17591116 Msa0672520:intron 20.0%
!!! TATTTTTTGGCATATATTCA+AGG + chr4_4:17591576-17591595 Msa0672520:intron 20.0%
!! TATATTCAAGGTCTTAAATT+TGG + chr4_4:17591588-17591607 Msa0672520:intron 20.0%
!! TAACATCTAGTAAATAGAAA+AGG - chr4_4:17591745-17591764 None:intergenic 20.0%
!!! TGTTTGAAAAGTATTCAAAA+TGG + chr4_4:17592038-17592057 Msa0672520:three_prime_UTR 20.0%
! TAATCACCTTTCATCAAAAT+TGG - chr4_4:17585302-17585321 None:intergenic 25.0%
! GAAAGGTGATTAAAGAATTA+AGG + chr4_4:17585310-17585329 Msa0672520:intron 25.0%
!!! CTCGTTTTGAAAAAAAAACA+AGG - chr4_4:17585351-17585370 None:intergenic 25.0%
! TATAATATATGCAAGGTTTG+AGG - chr4_4:17585381-17585400 None:intergenic 25.0%
!!! TACCACCTTATAATGTTTTT+TGG + chr4_4:17586222-17586241 Msa0672520:intron 25.0%
!!! ACCACCTTATAATGTTTTTT+GGG + chr4_4:17586223-17586242 Msa0672520:intron 25.0%
! AAACAAATTTGGATTGAGTA+AGG - chr4_4:17586358-17586377 None:intergenic 25.0%
! GTGTTAAGAACGTTATTAAA+AGG + chr4_4:17586423-17586442 Msa0672520:intron 25.0%
! TTTAGTAAATGAACCTTTCA+TGG + chr4_4:17586569-17586588 Msa0672520:intron 25.0%
!! TTAGAAGGTCACAATTTTAT+AGG + chr4_4:17586740-17586759 Msa0672520:intron 25.0%
!! TAGAAGGTCACAATTTTATA+GGG + chr4_4:17586741-17586760 Msa0672520:intron 25.0%
!!! ACATGGGTTAAATATGTTTT+TGG - chr4_4:17586768-17586787 None:intergenic 25.0%
!! GTAACTTGTCAAAAAAACAT+GGG - chr4_4:17586784-17586803 None:intergenic 25.0%
!! AGTAACTTGTCAAAAAAACA+TGG - chr4_4:17586785-17586804 None:intergenic 25.0%
!! TAATCTAGCTCAAAACTAAA+AGG + chr4_4:17586941-17586960 Msa0672520:intron 25.0%
! GTTAATAAAGAACAAGTTTG+TGG - chr4_4:17586971-17586990 None:intergenic 25.0%
! TACCCTTCTTTAATCAAAAT+TGG + chr4_4:17587456-17587475 Msa0672520:intron 25.0%
! AGGAAAGTTTATTCTAACTT+TGG - chr4_4:17587639-17587658 None:intergenic 25.0%
! AATGACTATTATCTCAAAGA+AGG - chr4_4:17587659-17587678 None:intergenic 25.0%
! AAACATCGTTAAAAACGTAA+AGG + chr4_4:17587817-17587836 Msa0672520:intron 25.0%
! ACGAAATCACAAAAATACAA+AGG + chr4_4:17588092-17588111 Msa0672520:intron 25.0%
! CGAAATCACAAAAATACAAA+GGG + chr4_4:17588093-17588112 Msa0672520:intron 25.0%
! AAAATAAATTCAGTTACAGC+CGG - chr4_4:17588291-17588310 None:intergenic 25.0%
! AAAACTTTGCATCAAGATTA+AGG - chr4_4:17588342-17588361 None:intergenic 25.0%
! TGTGCAGAAAATATAAGTAT+AGG - chr4_4:17588516-17588535 None:intergenic 25.0%
! AAGTATGCGATGAAAAATTA+TGG + chr4_4:17589033-17589052 Msa0672520:CDS 25.0%
! AAAATTAGAGCAAATTTGCA+TGG + chr4_4:17589171-17589190 Msa0672520:intron 25.0%
! TTTGTGAATACATATGTGTT+TGG - chr4_4:17589201-17589220 None:intergenic 25.0%
! ATATGTATTCACAAAAGCAA+TGG + chr4_4:17589206-17589225 Msa0672520:CDS 25.0%
! TATGTATTCACAAAAGCAAT+GGG + chr4_4:17589207-17589226 Msa0672520:CDS 25.0%
! AAAAGAAAACATGAACATGA+TGG - chr4_4:17589415-17589434 None:intergenic 25.0%
! AATGTTCAATACTTTCTTAG+AGG + chr4_4:17589552-17589571 Msa0672520:intron 25.0%
!! AATAATGTTATTAGGGTACT+TGG + chr4_4:17589619-17589638 Msa0672520:intron 25.0%
! CTTCATTTATTCATCTTAAG+AGG - chr4_4:17589745-17589764 None:intergenic 25.0%
!! GAGTTTGAATTCTTTTTATG+TGG + chr4_4:17589876-17589895 Msa0672520:intron 25.0%
! CCAAAGAGTGATAAAAAAAA+AGG - chr4_4:17590304-17590323 None:intergenic 25.0%
!!! CCTTTTTTTTTATCACTCTT+TGG + chr4_4:17590301-17590320 Msa0672520:intron 25.0%
!! ATATGCACTAGTTATTTCAA+CGG + chr4_4:17590655-17590674 Msa0672520:intron 25.0%
!! ACATGGTAGATGAAATTTTT+AGG - chr4_4:17590797-17590816 None:intergenic 25.0%
! TTCTTAATGAAGAAGAAACA+TGG - chr4_4:17590814-17590833 None:intergenic 25.0%
!! GAGTTTTCATGAAATATTGA+TGG - chr4_4:17590871-17590890 None:intergenic 25.0%
! AAAGAAGCAACTAAATCAAT+CGG - chr4_4:17591014-17591033 None:intergenic 25.0%
!! AAGAAAGTTCATTGGTAATT+TGG - chr4_4:17591339-17591358 None:intergenic 25.0%
! CTGTAAAAAAGAAAGTTCAT+TGG - chr4_4:17591347-17591366 None:intergenic 25.0%
!!! TTCAACACATATTTTCTAGT+TGG + chr4_4:17591395-17591414 Msa0672520:intron 25.0%
! TGTTTCTCACTAAATTTATG+TGG + chr4_4:17591430-17591449 Msa0672520:intron 25.0%
!!! TCTCAAACACACATTTTAAT+TGG - chr4_4:17591492-17591511 None:intergenic 25.0%
! AGTTATCATCATAAACATCT+TGG - chr4_4:17591639-17591658 None:intergenic 25.0%
! TAACTACAAGAAAATACGAA+TGG + chr4_4:17591654-17591673 Msa0672520:CDS 25.0%
! ATGAATATGGAGAAGAAAAA+TGG - chr4_4:17591783-17591802 None:intergenic 25.0%
! TTTGTCCAATTAATGCTAAT+CGG - chr4_4:17591912-17591931 None:intergenic 25.0%
! AATTATTTACTACCCCAAAA+TGG + chr4_4:17591990-17592009 Msa0672520:three_prime_UTR 25.0%
! ACACTTCATATTTGGATAAT+AGG - chr4_4:17592083-17592102 None:intergenic 25.0%
!! ATGTTTCTACACTTCATATT+TGG - chr4_4:17592091-17592110 None:intergenic 25.0%
!! CAACTACCAATTTTGATGAA+AGG + chr4_4:17585293-17585312 Msa0672520:CDS 30.0%
! GAGAGTGTATAATATATGCA+AGG - chr4_4:17585388-17585407 None:intergenic 30.0%
TGCATATATTATACACTCTC+TGG + chr4_4:17585388-17585407 Msa0672520:intron 30.0%
TACAGATTTGACATCTCAAT+GGG + chr4_4:17585650-17585669 Msa0672520:intron 30.0%
TCAATGGGTGTTAATACAAT+GGG + chr4_4:17585665-17585684 Msa0672520:CDS 30.0%
ATGTCTTAAACATCGCAAAA+AGG + chr4_4:17585696-17585715 Msa0672520:CDS 30.0%
! TTTTTCACAAGTATAGGACA+AGG - chr4_4:17585913-17585932 None:intergenic 30.0%
ACCCAAAAAACATTATAAGG+TGG - chr4_4:17586227-17586246 None:intergenic 30.0%
AAGTAAGGACTAAACTTACA+AGG - chr4_4:17586282-17586301 None:intergenic 30.0%
!!! GAGTGCAGAAATTTTTTGTA+GGG - chr4_4:17586326-17586345 None:intergenic 30.0%
!!! TGAGTGCAGAAATTTTTTGT+AGG - chr4_4:17586327-17586346 None:intergenic 30.0%
!!! TTTTGCGATATTTTTTTCGG+AGG - chr4_4:17586450-17586469 None:intergenic 30.0%
! GTCCCTGCTAAAATAAATTT+TGG - chr4_4:17586653-17586672 None:intergenic 30.0%
AAGTAAGGACTAAACTTAGA+AGG + chr4_4:17586725-17586744 Msa0672520:intron 30.0%
TTTGAAGGTGAGAAAAACAT+AGG + chr4_4:17587006-17587025 Msa0672520:intron 30.0%
GAACAAGGATAAACTATATG+CGG - chr4_4:17587117-17587136 None:intergenic 30.0%
TATTGTAATCCCAGATTGTA+GGG - chr4_4:17587141-17587160 None:intergenic 30.0%
TTATTGTAATCCCAGATTGT+AGG - chr4_4:17587142-17587161 None:intergenic 30.0%
TAAATCTCTGCATTGAGATT+AGG - chr4_4:17587204-17587223 None:intergenic 30.0%
ATAGTGTTTGCACAAATTGT+AGG + chr4_4:17587245-17587264 Msa0672520:intron 30.0%
TGAATGTTGAGATATCTTAG+AGG + chr4_4:17587547-17587566 Msa0672520:intron 30.0%
GTTTATTCTAACTTTGGCAA+GGG - chr4_4:17587633-17587652 None:intergenic 30.0%
AGTTTATTCTAACTTTGGCA+AGG - chr4_4:17587634-17587653 None:intergenic 30.0%
GTCGTTGTATGATATTAACT+TGG - chr4_4:17587870-17587889 None:intergenic 30.0%
AAGAGGAAAAAAAGATGTAG+AGG + chr4_4:17588160-17588179 Msa0672520:intron 30.0%
AGAGGAAAAAAAGATGTAGA+GGG + chr4_4:17588161-17588180 Msa0672520:intron 30.0%
AAGAAAGTTTAGAGAGAGAT+TGG + chr4_4:17588240-17588259 Msa0672520:intron 30.0%
ATCAAGATTAAGGTCAATTG+AGG - chr4_4:17588332-17588351 None:intergenic 30.0%
TTAAGAGCTTTCAAACACTT+AGG + chr4_4:17588393-17588412 Msa0672520:intron 30.0%
TAAGAGCTTTCAAACACTTA+GGG + chr4_4:17588394-17588413 Msa0672520:intron 30.0%
AAGCATGATTGAGAACAATT+AGG - chr4_4:17588561-17588580 None:intergenic 30.0%
!! TTAATTCTAGCTTATGTGTG+CGG + chr4_4:17588850-17588869 Msa0672520:intron 30.0%
TGAATTACAAGCAATGAATG+TGG + chr4_4:17588996-17589015 Msa0672520:CDS 30.0%
! GATTGAATATTTTCTCTGCT+TGG + chr4_4:17589382-17589401 Msa0672520:intron 30.0%
! CTTTCTTAGAGGTCTATTTT+TGG + chr4_4:17589563-17589582 Msa0672520:intron 30.0%
!!! TTTTTTGTCAAATAGTCTGG+TGG + chr4_4:17589708-17589727 Msa0672520:intron 30.0%
! TTTTTGTCAAATAGTCTGGT+GGG + chr4_4:17589709-17589728 Msa0672520:intron 30.0%
! GAATTCTTTTTATGTGGTTC+AGG + chr4_4:17589882-17589901 Msa0672520:intron 30.0%
! ACGATATCTAAAATTGTCCT+GGG - chr4_4:17590234-17590253 None:intergenic 30.0%
! TACGATATCTAAAATTGTCC+TGG - chr4_4:17590235-17590254 None:intergenic 30.0%
AAATAGGTCTCAATTTACGT+GGG - chr4_4:17590375-17590394 None:intergenic 30.0%
TAAATAGGTCTCAATTTACG+TGG - chr4_4:17590376-17590395 None:intergenic 30.0%
AAGGATTGAGCTTCTTAAAT+TGG - chr4_4:17590571-17590590 None:intergenic 30.0%
! TATGCACTAGTTATTTCAAC+GGG + chr4_4:17590656-17590675 Msa0672520:intron 30.0%
! TAATTTTCTACATTCGGGAT+AGG + chr4_4:17591102-17591121 Msa0672520:intron 30.0%
TTTCTCCGATTTCAAAATCT+GGG - chr4_4:17591179-17591198 None:intergenic 30.0%
! TTTTCTCCGATTTCAAAATC+TGG - chr4_4:17591180-17591199 None:intergenic 30.0%
! AGACGAAGTGGATATATTTT+TGG + chr4_4:17591299-17591318 Msa0672520:intron 30.0%
ATCATCATAAACATCTTGGA+AGG - chr4_4:17591635-17591654 None:intergenic 30.0%
!! ACTGCTTTAAAAAACACGTA+AGG - chr4_4:17591706-17591725 None:intergenic 30.0%
ATACGAACACGGAAAATTTA+AGG + chr4_4:17591838-17591857 Msa0672520:CDS 30.0%
TTGTCCAATTAATGCTAATC+GGG - chr4_4:17591911-17591930 None:intergenic 30.0%
!! TAGAAATTTCCAGCCATTTT+GGG - chr4_4:17592006-17592025 None:intergenic 30.0%
! ATAGAAATTTCCAGCCATTT+TGG - chr4_4:17592007-17592026 None:intergenic 30.0%
! ATCAAAATTGGTAGTTGCAG+CGG - chr4_4:17585290-17585309 None:intergenic 35.0%
TTGCTTATAATTGTAACCGG+AGG + chr4_4:17585522-17585541 Msa0672520:intron 35.0%
TGCTTATAATTGTAACCGGA+GGG + chr4_4:17585523-17585542 Msa0672520:intron 35.0%
! TGGAAAAGTATGAGTTGTCT+TGG - chr4_4:17585582-17585601 None:intergenic 35.0%
CATTGAGATGTCAAATCTGT+AGG - chr4_4:17585651-17585670 None:intergenic 35.0%
CTACAGATTTGACATCTCAA+TGG + chr4_4:17585649-17585668 Msa0672520:intron 35.0%
CTCAATGGGTGTTAATACAA+TGG + chr4_4:17585664-17585683 Msa0672520:CDS 35.0%
!! AAAAAGGTGTCCCAAAATGA+AGG + chr4_4:17585712-17585731 Msa0672520:CDS 35.0%
GATACTTACCTGTAGATATG+TGG - chr4_4:17585745-17585764 None:intergenic 35.0%
! TATCAATTTTTCCTCGCGAT+TGG + chr4_4:17586147-17586166 Msa0672520:intron 35.0%
! ATCAATTTTTCCTCGCGATT+GGG + chr4_4:17586148-17586167 Msa0672520:intron 35.0%
! TACAAGGTCGCAATTTTGTA+GGG - chr4_4:17586266-17586285 None:intergenic 35.0%
! TTACAAGGTCGCAATTTTGT+AGG - chr4_4:17586267-17586286 None:intergenic 35.0%
! CAAGTTTAGAACACCATGAA+AGG - chr4_4:17586585-17586604 None:intergenic 35.0%
!!! CTTTTGACTTTTGCTAGACA+AGG + chr4_4:17587324-17587343 Msa0672520:intron 35.0%
TGTAAATACGTGTGTATGCT+TGG + chr4_4:17587414-17587433 Msa0672520:intron 35.0%
GTAAATACGTGTGTATGCTT+GGG + chr4_4:17587415-17587434 Msa0672520:intron 35.0%
AGATATCTCAACATTCACTC+AGG - chr4_4:17587544-17587563 None:intergenic 35.0%
ACTGAAGTCGATCTTTCAAT+AGG + chr4_4:17587991-17588010 Msa0672520:intron 35.0%
GAGGAAAAAAAGATGTAGAG+GGG + chr4_4:17588162-17588181 Msa0672520:intron 35.0%
ATTATCACTAGTAACAGCCA+CGG - chr4_4:17588814-17588833 None:intergenic 35.0%
!! TAATTCTAGCTTATGTGTGC+GGG + chr4_4:17588851-17588870 Msa0672520:intron 35.0%
TCAAGAGAAACCATTTGAGA+TGG + chr4_4:17588900-17588919 Msa0672520:CDS 35.0%
! CAAGAGAAACCATTTGAGAT+GGG + chr4_4:17588901-17588920 Msa0672520:CDS 35.0%
ACACACAGAAATGAATTTGC+TGG + chr4_4:17588960-17588979 Msa0672520:CDS 35.0%
TTAGAGCAAATTTGCATGGT+TGG + chr4_4:17589175-17589194 Msa0672520:intron 35.0%
GTTGGACGTATAATGATCAA+TGG - chr4_4:17589267-17589286 None:intergenic 35.0%
ATAGCTTAGCTTAGCTATCA+GGG - chr4_4:17589807-17589826 None:intergenic 35.0%
TATAGCTTAGCTTAGCTATC+AGG - chr4_4:17589808-17589827 None:intergenic 35.0%
GATAGTATGATATGTGCCTA+TGG + chr4_4:17590177-17590196 Msa0672520:CDS 35.0%
ATGATATGTGCCTATGGTAA+AGG + chr4_4:17590183-17590202 Msa0672520:CDS 35.0%
TGATATGTGCCTATGGTAAA+GGG + chr4_4:17590184-17590203 Msa0672520:CDS 35.0%
! GGGAAATTGCCATATTTTCT+TGG + chr4_4:17590204-17590223 Msa0672520:CDS 35.0%
CTGGGATTACCAAGAAAATA+TGG - chr4_4:17590216-17590235 None:intergenic 35.0%
!! CATATTTTCTTGGTAATCCC+AGG + chr4_4:17590214-17590233 Msa0672520:CDS 35.0%
! ATGCACTAGTTATTTCAACG+GGG + chr4_4:17590657-17590676 Msa0672520:intron 35.0%
TATGTAGATACCTGCAGATT+TGG + chr4_4:17590724-17590743 Msa0672520:intron 35.0%
! TGGACATCAGAAATTTTGAG+AGG - chr4_4:17590839-17590858 None:intergenic 35.0%
AATATTGATGGGAAATGCTG+TGG - chr4_4:17590859-17590878 None:intergenic 35.0%
! AAAAGCAGCCATACTTTTCA+AGG - chr4_4:17590942-17590961 None:intergenic 35.0%
CGATTTCAAAATCTGGGTAT+GGG - chr4_4:17591173-17591192 None:intergenic 35.0%
!!! CCATACCCAGATTTTGAAAT+CGG + chr4_4:17591171-17591190 Msa0672520:intron 35.0%
! TTTTCATTGGGTTTGGGTAT+GGG - chr4_4:17591209-17591228 None:intergenic 35.0%
! ATTTTCATTGGGTTTGGGTA+TGG - chr4_4:17591210-17591229 None:intergenic 35.0%
ATACCCAAACCCAATGAAAA+TGG + chr4_4:17591209-17591228 Msa0672520:intron 35.0%
TACCCAAACCCAATGAAAAT+GGG + chr4_4:17591210-17591229 Msa0672520:intron 35.0%
CATAAACATCTTGGAAGGAA+TGG - chr4_4:17591630-17591649 None:intergenic 35.0%
!! TAGCTTTGATGATACGAACA+CGG + chr4_4:17591827-17591846 Msa0672520:intron 35.0%
GAACACGGAAAATTTAAGGA+GGG + chr4_4:17591842-17591861 Msa0672520:CDS 35.0%
AAATTTAAGGAGGGCAACAA+AGG + chr4_4:17591851-17591870 Msa0672520:CDS 35.0%
AATTTAAGGAGGGCAACAAA+GGG + chr4_4:17591852-17591871 Msa0672520:CDS 35.0%
TTGACCCGATTAGCATTAAT+TGG + chr4_4:17591904-17591923 Msa0672520:CDS 35.0%
!! AGAAATTTCCAGCCATTTTG+GGG - chr4_4:17592005-17592024 None:intergenic 35.0%
! TGGACAAGGACCTTCATTTT+GGG - chr4_4:17585725-17585744 None:intergenic 40.0%
TACCTGTAGATATGTGGACA+AGG - chr4_4:17585739-17585758 None:intergenic 40.0%
TTGAGATTAGGAAGTCCTCT+AGG - chr4_4:17587192-17587211 None:intergenic 40.0%
GTGATTTCGTCGTCAAATTG+TGG - chr4_4:17588082-17588101 None:intergenic 40.0%
! AGATGTAGAGGGGTGATTTT+AGG + chr4_4:17588172-17588191 Msa0672520:intron 40.0%
! CATCGAAGAAGAGTGGTTTT+AGG - chr4_4:17588209-17588228 None:intergenic 40.0%
CTAAAACCACTCTTCTTCGA+TGG + chr4_4:17588207-17588226 Msa0672520:intron 40.0%
TCTCACTAGAAAACTAGAGC+CGG + chr4_4:17588269-17588288 Msa0672520:intron 40.0%
GAGCTATGTGTCATGGATAA+AGG - chr4_4:17588366-17588385 None:intergenic 40.0%
!! AGGACTTTGACTTGTTACAG+AGG + chr4_4:17588474-17588493 Msa0672520:intron 40.0%
GGTACAAAGTAGCAGATAGT+TGG - chr4_4:17588677-17588696 None:intergenic 40.0%
TTATCACTAGTAACAGCCAC+GGG - chr4_4:17588813-17588832 None:intergenic 40.0%
!! AATTCTAGCTTATGTGTGCG+GGG + chr4_4:17588852-17588871 Msa0672520:intron 40.0%
GATCATTATACGTCCAACGA+TGG + chr4_4:17589269-17589288 Msa0672520:CDS 40.0%
CTTGTACTAGTTACCATCGT+TGG - chr4_4:17589285-17589304 None:intergenic 40.0%
GTGAATACGAGTAGAGTTCA+AGG + chr4_4:17589461-17589480 Msa0672520:intron 40.0%
TGGCAATTTCCCTTTACCAT+AGG - chr4_4:17590196-17590215 None:intergenic 40.0%
!! ATTTACGTGGGTGTTGAGTA+CGG - chr4_4:17590363-17590382 None:intergenic 40.0%
! CAATTGATGACCAAATCTGC+AGG - chr4_4:17590737-17590756 None:intergenic 40.0%
ACTCCTTGCCTAAACAAAGA+TGG + chr4_4:17590887-17590906 Msa0672520:CDS 40.0%
CTCCTTGCCTAAACAAAGAT+GGG + chr4_4:17590888-17590907 Msa0672520:CDS 40.0%
! TTCCCATCTTTGTTTAGGCA+AGG - chr4_4:17590893-17590912 None:intergenic 40.0%
! TTGGCTTCCCATCTTTGTTT+AGG - chr4_4:17590898-17590917 None:intergenic 40.0%
AAGCCAATAGTCGTTTCCAA+GGG + chr4_4:17590911-17590930 Msa0672520:CDS 40.0%
ATTCCCTTGGAAACGACTAT+TGG - chr4_4:17590917-17590936 None:intergenic 40.0%
!! ACTTTTCAAGGCAATTCCCT+TGG - chr4_4:17590930-17590949 None:intergenic 40.0%
GGGAATTGCCTTGAAAAGTA+TGG + chr4_4:17590931-17590950 Msa0672520:CDS 40.0%
ATTCGGGATAGGTTTGAGTA+TGG + chr4_4:17591113-17591132 Msa0672520:intron 40.0%
TTCGGGATAGGTTTGAGTAT+GGG + chr4_4:17591114-17591133 Msa0672520:intron 40.0%
GATAGGTTTGAGTATGGGTT+CGG + chr4_4:17591119-17591138 Msa0672520:intron 40.0%
ATAGGTTTGAGTATGGGTTC+GGG + chr4_4:17591120-17591139 Msa0672520:intron 40.0%
CCGATTTCAAAATCTGGGTA+TGG - chr4_4:17591174-17591193 None:intergenic 40.0%
ACCCAAACCCAATGAAAATG+GGG + chr4_4:17591211-17591230 Msa0672520:intron 40.0%
! TCCCCATTTTCATTGGGTTT+GGG - chr4_4:17591215-17591234 None:intergenic 40.0%
! TTCCCCATTTTCATTGGGTT+TGG - chr4_4:17591216-17591235 None:intergenic 40.0%
! GGGTTTTCCCCATTTTCATT+GGG - chr4_4:17591221-17591240 None:intergenic 40.0%
AAAACCCGTCAAATTGGGTT+TGG + chr4_4:17591234-17591253 Msa0672520:intron 40.0%
ATATCCACTTCGTCTAAGCA+TGG - chr4_4:17591294-17591313 None:intergenic 40.0%
! GTGTTTGAGAGTGCATTGAT+AGG + chr4_4:17591502-17591521 Msa0672520:intron 40.0%
CGAACACGGAAAATTTAAGG+AGG + chr4_4:17591841-17591860 Msa0672520:CDS 40.0%
AAGGGCTATAACATGGAGAA+TGG + chr4_4:17591870-17591889 Msa0672520:CDS 40.0%
ATGATGAATACGCACATTCC+TGG + chr4_4:17591936-17591955 Msa0672520:CDS 40.0%
ATTTACTACCCCAAAATGGC+TGG + chr4_4:17591994-17592013 Msa0672520:three_prime_UTR 40.0%
TTGCAGCGGAATGGACAATA+AGG - chr4_4:17585276-17585295 None:intergenic 45.0%
! AATTGGTAGTTGCAGCGGAA+TGG - chr4_4:17585285-17585304 None:intergenic 45.0%
CAGTAACAATGTACACCCTC+CGG - chr4_4:17585541-17585560 None:intergenic 45.0%
! GTGGACAAGGACCTTCATTT+TGG - chr4_4:17585726-17585745 None:intergenic 45.0%
GTCCTTGTCCACATATCTAC+AGG + chr4_4:17585734-17585753 Msa0672520:CDS 45.0%
ATGTTATAAGCCCAATCGCG+AGG - chr4_4:17586161-17586180 None:intergenic 45.0%
TCCTTGTTCACCCTACAATC+TGG + chr4_4:17587128-17587147 Msa0672520:intron 45.0%
CCTTGTTCACCCTACAATCT+GGG + chr4_4:17587129-17587148 Msa0672520:intron 45.0%
GAGTCAAATGCTTGACACAG+TGG + chr4_4:17587702-17587721 Msa0672520:intron 45.0%
TTTGAATTCGCGTCTTGTCG+CGG - chr4_4:17588030-17588049 None:intergenic 45.0%
! GTGTTGTTAGTCGTCTTGTG+CGG - chr4_4:17588055-17588074 None:intergenic 45.0%
CTTCATCCATCGAAGAAGAG+TGG - chr4_4:17588216-17588235 None:intergenic 45.0%
CACTCTTCTTCGATGGATGA+AGG + chr4_4:17588214-17588233 Msa0672520:intron 45.0%
CCTTAACGAGCTATGTGTCA+TGG - chr4_4:17588373-17588392 None:intergenic 45.0%
CCATGACACATAGCTCGTTA+AGG + chr4_4:17588370-17588389 Msa0672520:intron 45.0%
! CACAAGCTTAGAGCTTTGAC+CGG + chr4_4:17588427-17588446 Msa0672520:intron 45.0%
AAGTCAAAGCTCTGCACTAC+CGG - chr4_4:17588449-17588468 None:intergenic 45.0%
!! GCAGAGCTTTGACTTGGTTT+AGG + chr4_4:17588454-17588473 Msa0672520:intron 45.0%
TATCACTAGTAACAGCCACG+GGG - chr4_4:17588812-17588831 None:intergenic 45.0%
GATTGACGACCCATCTCAAA+TGG - chr4_4:17588913-17588932 None:intergenic 45.0%
! TGGGTCGTCAATCTCTAGAA+AGG + chr4_4:17588920-17588939 Msa0672520:CDS 45.0%
ACAAGCAAAGATCCGTTTCC+TGG + chr4_4:17589300-17589319 Msa0672520:CDS 45.0%
CCTTCAATCCAACCAGGAAA+CGG - chr4_4:17589315-17589334 None:intergenic 45.0%
CTTTGACCTTCAATCCAACC+AGG - chr4_4:17589321-17589340 None:intergenic 45.0%
CTGGTTGGATTGAAGGTCAA+AGG + chr4_4:17589319-17589338 Msa0672520:CDS 45.0%
GAAGCCAATAGTCGTTTCCA+AGG + chr4_4:17590910-17590929 Msa0672520:CDS 45.0%
TCTAACAAACCTCAAGTGGC+AGG - chr4_4:17590991-17591010 None:intergenic 45.0%
TCGGTCTAACAAACCTCAAG+TGG - chr4_4:17590995-17591014 None:intergenic 45.0%
TAGGTTTGAGTATGGGTTCG+GGG + chr4_4:17591121-17591140 Msa0672520:intron 45.0%
! CGGGTTTTCCCCATTTTCAT+TGG - chr4_4:17591222-17591241 None:intergenic 45.0%
ATGGGGAAAACCCGTCAAAT+TGG + chr4_4:17591228-17591247 Msa0672520:intron 45.0%
TGGGGAAAACCCGTCAAATT+GGG + chr4_4:17591229-17591248 Msa0672520:intron 45.0%
CGAACCAAACCCAATTTGAC+GGG - chr4_4:17591241-17591260 None:intergenic 45.0%
CCGAACCAAACCCAATTTGA+CGG - chr4_4:17591242-17591261 None:intergenic 45.0%
! CCGTCAAATTGGGTTTGGTT+CGG + chr4_4:17591239-17591258 Msa0672520:intron 45.0%
! CGTCAAATTGGGTTTGGTTC+GGG + chr4_4:17591240-17591259 Msa0672520:intron 45.0%
!! AAATTGGGTTTGGTTCGGGT+AGG + chr4_4:17591244-17591263 Msa0672520:intron 45.0%
GGCAACAAAGGGCTATAACA+TGG + chr4_4:17591863-17591882 Msa0672520:CDS 45.0%
ATTGCATACTTGACGAGACC+AGG - chr4_4:17591957-17591976 None:intergenic 45.0%
!!! ATTTTTTTTATTTTTTTTCT+GGG - chr4_4:17585767-17585786 None:intergenic 5.0%
!!! TATTTTTTTTATTTTTTTTC+TGG - chr4_4:17585768-17585787 None:intergenic 5.0%
!!! TAGATTATAAATATTTTTTT+TGG - chr4_4:17586928-17586947 None:intergenic 5.0%
!! TATATCAAAATTTAAATTAA+GGG + chr4_4:17590001-17590020 Msa0672520:intron 5.0%
CCCAGATTGTAGGGTGAACA+AGG - chr4_4:17587132-17587151 None:intergenic 50.0%
! CAACCTAGTTCTCGACCTAG+AGG + chr4_4:17587174-17587193 Msa0672520:intron 50.0%
AGTCCTCTAGGTCGAGAACT+AGG - chr4_4:17587180-17587199 None:intergenic 50.0%
GTGTATGCTTGGGTGTTCGT+AGG + chr4_4:17587425-17587444 Msa0672520:intron 50.0%
CACAGTGGATCTCACTAGAG+AGG + chr4_4:17587717-17587736 Msa0672520:intron 50.0%
! ATCCGGAAGCATGGGCATTT+CGG - chr4_4:17587929-17587948 None:intergenic 50.0%
! GGTAGTGCAGAGCTTTGACT+TGG + chr4_4:17588448-17588467 Msa0672520:intron 50.0%
TTATGTGTGCGGGGAGACTA+AGG + chr4_4:17588861-17588880 Msa0672520:CDS 50.0%
GCAAAGATCCGTTTCCTGGT+TGG + chr4_4:17589304-17589323 Msa0672520:CDS 50.0%
CCGTTTCCTGGTTGGATTGA+AGG + chr4_4:17589312-17589331 Msa0672520:CDS 50.0%
! TCGATATGTCCTGCCACTTG+AGG + chr4_4:17590979-17590998 Msa0672520:CDS 50.0%
TTTGAGTATGGGTTCGGGGT+GGG + chr4_4:17591125-17591144 Msa0672520:intron 50.0%
!! TTGGTTCGGGTAGGTAACCA+CGG + chr4_4:17591253-17591272 Msa0672520:intron 50.0%
GGCAACAAAACTCATACCCG+TGG - chr4_4:17591273-17591292 None:intergenic 50.0%
GTTGCCATGCTTAGACGAAG+TGG + chr4_4:17591287-17591306 Msa0672520:intron 50.0%
CACCGAAATGCCCATGCTTC+CGG + chr4_4:17587924-17587943 Msa0672520:intron 55.0%
! CGTTGCAGATCCGGAAGCAT+GGG - chr4_4:17587937-17587956 None:intergenic 55.0%
ACGTTGCAGATCCGGAAGCA+TGG - chr4_4:17587938-17587957 None:intergenic 55.0%
GGGCATCAACGTTGCAGATC+CGG - chr4_4:17587946-17587965 None:intergenic 55.0%
ATTTCACCTTCCCATCCCCG+TGG + chr4_4:17588794-17588813 Msa0672520:intron 55.0%
CTAGTAACAGCCACGGGGAT+GGG - chr4_4:17588807-17588826 None:intergenic 55.0%
ACTAGTAACAGCCACGGGGA+TGG - chr4_4:17588808-17588827 None:intergenic 55.0%
CGGGGAGACTAAGGAAGGAA+AGG + chr4_4:17588870-17588889 Msa0672520:CDS 55.0%
GTTTGAGTATGGGTTCGGGG+TGG + chr4_4:17591124-17591143 Msa0672520:intron 55.0%
CTGGGTATGGGACGAGTAAC+AGG - chr4_4:17591161-17591180 None:intergenic 55.0%
! TGGTTCGGGTAGGTAACCAC+GGG + chr4_4:17591254-17591273 Msa0672520:intron 55.0%
TAACAGCCACGGGGATGGGA+AGG - chr4_4:17588803-17588822 None:intergenic 60.0%
GTGTGCGGGGAGACTAAGGA+AGG + chr4_4:17588865-17588884 Msa0672520:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 17585254 17592193 17585254 ID=Msa0672520;Name=Msa0672520
chr4_4 mRNA 17585254 17592193 17585254 ID=Msa0672520-mRNA-1;Parent=Msa0672520;Name=Msa0672520-mRNA-1;_AED=0.08;_eAED=0.08;_QI=2|1|1|1|0.71|0.62|8|210|386
chr4_4 exon 17585254 17585314 17585254 ID=Msa0672520-mRNA-1:exon:5157;Parent=Msa0672520-mRNA-1
chr4_4 exon 17585655 17585755 17585655 ID=Msa0672520-mRNA-1:exon:5158;Parent=Msa0672520-mRNA-1
chr4_4 exon 17588860 17589064 17588860 ID=Msa0672520-mRNA-1:exon:5159;Parent=Msa0672520-mRNA-1
chr4_4 exon 17589179 17589340 17589179 ID=Msa0672520-mRNA-1:exon:5160;Parent=Msa0672520-mRNA-1
chr4_4 exon 17590170 17590251 17590170 ID=Msa0672520-mRNA-1:exon:5161;Parent=Msa0672520-mRNA-1
chr4_4 exon 17590731 17591000 17590731 ID=Msa0672520-mRNA-1:exon:5162;Parent=Msa0672520-mRNA-1
chr4_4 exon 17591598 17591725 17591598 ID=Msa0672520-mRNA-1:exon:5163;Parent=Msa0672520-mRNA-1
chr4_4 exon 17591830 17592193 17591830 ID=Msa0672520-mRNA-1:exon:5164;Parent=Msa0672520-mRNA-1
chr4_4 five_prime_UTR 17585254 17585255 17585254 ID=Msa0672520-mRNA-1:five_prime_utr;Parent=Msa0672520-mRNA-1
chr4_4 CDS 17585256 17585314 17585256 ID=Msa0672520-mRNA-1:cds;Parent=Msa0672520-mRNA-1
chr4_4 CDS 17585655 17585755 17585655 ID=Msa0672520-mRNA-1:cds;Parent=Msa0672520-mRNA-1
chr4_4 CDS 17588860 17589064 17588860 ID=Msa0672520-mRNA-1:cds;Parent=Msa0672520-mRNA-1
chr4_4 CDS 17589179 17589340 17589179 ID=Msa0672520-mRNA-1:cds;Parent=Msa0672520-mRNA-1
chr4_4 CDS 17590170 17590251 17590170 ID=Msa0672520-mRNA-1:cds;Parent=Msa0672520-mRNA-1
chr4_4 CDS 17590731 17591000 17590731 ID=Msa0672520-mRNA-1:cds;Parent=Msa0672520-mRNA-1
chr4_4 CDS 17591598 17591725 17591598 ID=Msa0672520-mRNA-1:cds;Parent=Msa0672520-mRNA-1
chr4_4 CDS 17591830 17591983 17591830 ID=Msa0672520-mRNA-1:cds;Parent=Msa0672520-mRNA-1
chr4_4 three_prime_UTR 17591984 17592193 17591984 ID=Msa0672520-mRNA-1:three_prime_utr;Parent=Msa0672520-mRNA-1
Gene Sequence

>Msa0672520

ATGTTTGAAGAGATAGACCTTATTGTCCATTCCGCTGCAACTACCAATTTTGATGAAAGATTTGACATCTCAATGGGTGTTAATACAATGGGAGCTTTACATGTCTTAAACATCGCAAAAAGGTGTCCCAAAATGAAGGTCCTTGTCCACATATCTACAGCTTATGTGTGCGGGGAGACTAAGGAAGGAAAGGCAATATTTCAAGAGAAACCATTTGAGATGGGTCGTCAATCTCTAGAAAGGTCTTCAAAATTAGACATACACACAGAAATGAATTTGCTGGAGAAAAAATTAGATGAATTACAAGCAATGAATGTGGATGAAAAAACACTCAAGTATGCGATGAAAAATTATGGAATTGAAAGAGCAAATTTGCATGGTTGGCCAAACACATATGTATTCACAAAAGCAATGGGAGAGATGCTTTTAGTGCATCATAAAGATAATGTACCATTGATCATTATACGTCCAACGATGGTAACTAGTACAAGCAAAGATCCGTTTCCTGGTTGGATTGAAGGTCAAAGAACTGTTGATAGTATGATATGTGCCTATGGTAAAGGGAAATTGCCATATTTTCTTGGTAATCCCAGGACAATTTTAGATATCATACCTGCAGATTTGGTCATCAATTGTGTGATTGCAGCAATTGTTATTGATTCAAATCAAGCTCCTAAAAATTTCATCTACCATGTTTCTTCTTCATTAAGAAATCCTCTCAAAATTTCTGATGTCCACAGCATTTCCCATCAATATTTCATGAAAACTCCTTGCCTAAACAAAGATGGGAAGCCAATAGTCGTTTCCAAGGGAATTGCCTTGAAAAGTATGGCTGCTTTTAACATTTATACAGAGACTCGATATGTCCTGCCACTTGAGGTCTTAAATTTGGTGAACAAACTGATTTGCCATTCCTTCCAAGATGTTTATGATGATAACTACAAGAAAATACGAATGGTGAAGCGACTTGCAAAACTATACAAACCTTACGTGTTTTTTAAAGCAGTCTTTGATGATACGAACACGGAAAATTTAAGGAGGGCAACAAAGGGCTATAACATGGAGAATGGAATGCTAGAATTTGACCCGATTAGCATTAATTGGACAAACTACATGATGAATACGCACATTCCTGGTCTCGTCAAGTATGCAATGAAATAA

Protein sequence

>Msa0672520

MFEEIDLIVHSAATTNFDERFDISMGVNTMGALHVLNIAKRCPKMKVLVHISTAYVCGETKEGKAIFQEKPFEMGRQSLERSSKLDIHTEMNLLEKKLDELQAMNVDEKTLKYAMKNYGIERANLHGWPNTYVFTKAMGEMLLVHHKDNVPLIIIRPTMVTSTSKDPFPGWIEGQRTVDSMICAYGKGKLPYFLGNPRTILDIIPADLVINCVIAAIVIDSNQAPKNFIYHVSSSLRNPLKISDVHSISHQYFMKTPCLNKDGKPIVVSKGIALKSMAAFNIYTETRYVLPLEVLNLVNKLICHSFQDVYDDNYKKIRMVKRLAKLYKPYVFFKAVFDDTNTENLRRATKGYNMENGMLEFDPISINWTNYMMNTHIPGLVKYAMK*