AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1419960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1419960 MtrunA17_Chr5g0413951 94.421 233 12 1 7 238 118 350 4.96e-149 419
Msa1419960 MtrunA17_Chr5g0413941 87.124 233 29 1 7 238 118 350 5.41e-139 394
Msa1419960 MtrunA17_Chr5g0413931 71.983 232 64 1 7 237 117 348 7.65e-120 345
Msa1419960 MtrunA17_Chr5g0413921 73.246 228 57 1 7 234 118 341 7.18e-118 340
Msa1419960 MtrunA17_Chr4g0059311 44.348 230 125 1 7 233 123 352 4.59e-58 187
Msa1419960 MtrunA17_Chr3g0126101 40.086 232 137 2 7 238 116 345 1.71e-51 170
Msa1419960 MtrunA17_Chr7g0227921 41.949 236 129 3 7 237 122 354 2.34e-51 171
Msa1419960 MtrunA17_Chr6g0451211 41.810 232 126 4 8 234 126 353 2.56e-48 162
Msa1419960 MtrunA17_Chr5g0413961 41.202 233 127 4 7 234 124 351 5.86e-48 161
Msa1419960 MtrunA17_Chr6g0451191 38.158 228 133 3 10 233 1 224 8.48e-48 157
Msa1419960 MtrunA17_Chr1g0150151 37.131 237 132 4 7 231 123 354 1.46e-47 160
Msa1419960 MtrunA17_Chr6g0451201 42.672 232 125 3 6 233 120 347 2.19e-47 160
Msa1419960 MtrunA17_Chr6g0451251 43.568 241 112 5 8 235 125 354 6.19e-45 154
Msa1419960 MtrunA17_Chr7g0255561 37.209 215 125 3 7 214 125 336 1.58e-41 145
Msa1419960 MtrunA17_Chr7g0255581 37.209 215 125 3 7 214 125 336 1.58e-41 145
Msa1419960 MtrunA17_Chr6g0451171 38.696 230 133 3 8 233 124 349 3.69e-41 144
Msa1419960 MtrunA17_Chr6g0451261 39.796 196 114 3 1 195 118 310 1.24e-40 148
Msa1419960 MtrunA17_Chr3g0114731 35.909 220 139 2 7 226 129 346 3.08e-38 137
Msa1419960 MtrunA17_Chr3g0081511 33.929 224 133 4 1 215 121 338 7.16e-38 136
Msa1419960 MtrunA17_Chr3g0126091 32.877 219 142 3 7 221 125 342 2.25e-36 131
Msa1419960 MtrunA17_Chr6g0483401 30.508 236 150 5 9 237 123 351 3.23e-36 131
Msa1419960 MtrunA17_Chr3g0081421 31.799 239 139 6 4 230 127 353 5.49e-36 131
Msa1419960 MtrunA17_Chr8g0354121 31.839 223 142 5 1 215 117 337 2.99e-34 126
Msa1419960 MtrunA17_Chr3g0114691 30.435 230 158 1 8 235 132 361 7.10e-34 125
Msa1419960 MtrunA17_Chr1g0164831 32.110 218 142 2 10 221 115 332 1.20e-33 124
Msa1419960 MtrunA17_Chr8g0383731 32.719 217 136 2 7 215 116 330 1.52e-33 124
Msa1419960 MtrunA17_Chr2g0290611 32.057 209 140 1 8 214 124 332 2.47e-33 123
Msa1419960 MtrunA17_Chr3g0129601 31.111 225 151 2 7 227 140 364 2.15e-32 121
Msa1419960 MtrunA17_Chr1g0160171 33.803 213 139 2 7 218 127 338 2.24e-32 121
Msa1419960 MtrunA17_Chr1g0186571 31.944 216 130 3 8 215 125 331 1.02e-30 116
Msa1419960 MtrunA17_Chr1g0186641 30.556 216 141 4 4 215 121 331 1.19e-30 116
Msa1419960 MtrunA17_Chr4g0050881 31.600 250 130 6 8 232 120 353 1.43e-30 115
Msa1419960 MtrunA17_Chr1g0160181 31.963 219 132 4 7 215 129 340 1.68e-30 116
Msa1419960 MtrunA17_Chr2g0278551 31.532 222 148 2 8 227 124 343 1.94e-30 116
Msa1419960 MtrunA17_Chr1g0182291 29.565 230 155 4 7 233 126 351 2.70e-30 115
Msa1419960 MtrunA17_Chr4g0050891 32.367 207 135 2 8 209 125 331 4.51e-30 114
Msa1419960 MtrunA17_Chr1g0184221 28.704 216 149 2 8 222 142 353 6.61e-30 114
Msa1419960 MtrunA17_Chr3g0142131 28.216 241 157 4 7 233 131 369 1.33e-29 114
Msa1419960 MtrunA17_Chr5g0404811 29.032 217 146 3 9 220 6 219 2.26e-29 110
Msa1419960 MtrunA17_Chr1g0186611 29.245 212 141 4 9 216 129 335 2.61e-29 112
Msa1419960 MtrunA17_Chr2g0278561 30.045 223 151 3 10 229 129 349 3.00e-29 113
Msa1419960 MtrunA17_Chr1g0155761 27.500 240 154 3 7 227 132 370 3.70e-29 113
Msa1419960 MtrunA17_Chr7g0263101 31.963 219 138 5 7 219 124 337 3.72e-29 112
Msa1419960 MtrunA17_Chr2g0284261 29.665 209 141 2 8 214 120 324 8.37e-29 111
Msa1419960 MtrunA17_Chr4g0051021 30.804 224 145 4 8 225 126 345 8.59e-29 111
Msa1419960 MtrunA17_Chr4g0073241 30.328 244 149 4 7 235 122 359 4.05e-28 109
Msa1419960 MtrunA17_Chr4g0050931 30.415 217 140 5 7 214 84 298 6.79e-28 108
Msa1419960 MtrunA17_Chr4g0050941 31.200 250 147 6 9 235 126 373 8.81e-28 108
Msa1419960 MtrunA17_Chr3g0114711 30.000 270 149 6 7 238 125 392 1.10e-27 108
Msa1419960 MtrunA17_Chr1g0160111 31.163 215 140 3 7 214 118 331 1.76e-27 108
Msa1419960 MtrunA17_Chr1g0171301 30.622 209 144 1 9 216 129 337 1.90e-27 107
Msa1419960 MtrunA17_Chr7g0271561 29.302 215 145 2 7 214 118 332 3.92e-27 107
Msa1419960 MtrunA17_Chr6g0463971 31.754 211 141 2 7 214 126 336 9.79e-27 105
Msa1419960 MtrunA17_Chr2g0310441 28.155 206 145 2 10 214 126 329 1.54e-26 105
Msa1419960 MtrunA17_Chr3g0129591 31.019 216 137 3 7 214 118 329 4.37e-26 103
Msa1419960 MtrunA17_Chr1g0186561 31.132 212 138 3 9 216 129 336 6.52e-26 103
Msa1419960 MtrunA17_Chr1g0186601 28.384 229 147 3 9 229 129 348 6.97e-26 103
Msa1419960 MtrunA17_Chr2g0278021 30.222 225 150 2 10 227 1 225 1.31e-25 101
Msa1419960 MtrunA17_Chr5g0408041 30.242 248 153 6 7 235 122 368 1.69e-25 102
Msa1419960 MtrunA17_Chr8g0334761 29.327 208 143 2 9 214 124 329 2.00e-25 102
Msa1419960 MtrunA17_Chr5g0407991 28.455 246 158 4 7 235 120 364 2.49e-25 102
Msa1419960 MtrunA17_Chr2g0332001 29.150 247 151 5 8 238 150 388 2.64e-25 102
Msa1419960 MtrunA17_Chr8g0369841 28.017 232 151 3 11 227 124 354 2.86e-25 102
Msa1419960 MtrunA17_Chr5g0408031 28.821 229 145 4 7 218 121 348 3.07e-25 102
Msa1419960 MtrunA17_Chr2g0278541 28.972 214 140 3 11 214 127 338 3.39e-25 102
Msa1419960 MtrunA17_Chr3g0114701 32.701 211 139 2 7 214 120 330 4.44e-25 101
Msa1419960 MtrunA17_Chr3g0129571 28.378 222 151 3 7 222 120 339 4.60e-25 101
Msa1419960 MtrunA17_Chr8g0334751 27.778 234 160 3 10 235 126 358 5.64e-25 100
Msa1419960 MtrunA17_Chr5g0407971 27.074 229 147 5 7 218 122 347 1.65e-24 100
Msa1419960 MtrunA17_Chr3g0084091 29.167 216 148 4 1 214 37 249 2.86e-24 98.2
Msa1419960 MtrunA17_Chr6g0451241 50.000 94 44 1 143 233 8 101 5.19e-23 90.1
Msa1419960 MtrunA17_Chr8g0334771 26.887 212 155 0 10 221 125 336 7.76e-23 95.5
Msa1419960 MtrunA17_Chr5g0408001 27.869 244 154 5 7 231 121 361 8.28e-23 95.5
Msa1419960 MtrunA17_Chr5g0429001 28.700 223 144 5 1 214 58 274 9.54e-23 94.4
Msa1419960 MtrunA17_Chr5g0441761 25.561 223 161 1 7 229 125 342 1.53e-22 94.4
Msa1419960 MtrunA17_Chr5g0428881 28.837 215 142 4 7 214 129 339 1.81e-22 94.4
Msa1419960 MtrunA17_Chr3g0129581 28.505 214 145 3 7 214 118 329 5.46e-20 87.4
Msa1419960 MtrunA17_Chr8g0334721 31.655 139 83 1 107 233 2 140 3.00e-19 81.6
Msa1419960 MtrunA17_Chr1g0211801 32.432 148 99 1 8 154 121 268 3.00e-17 78.6
Msa1419960 MtrunA17_Chr5g0399281 25.974 231 162 5 8 231 120 348 1.73e-16 77.4
Msa1419960 MtrunA17_Chr4g0051001 27.807 187 132 2 9 192 144 330 4.83e-16 75.9
Msa1419960 MtrunA17_Chr4g0056081 24.658 219 161 3 7 221 126 344 1.81e-15 74.7
Msa1419960 MtrunA17_Chr1g0177221 30.216 139 95 2 7 144 129 266 1.68e-14 70.9
Msa1419960 MtrunA17_Chr1g0172891 32.432 74 50 0 142 215 6 79 1.08e-13 65.5
Msa1419960 MtrunA17_Chr1g0177231 32.432 74 50 0 148 221 34 107 8.31e-13 63.5
Msa1419960 MtrunA17_Chr1g0182261 30.645 124 83 3 96 216 89 212 3.14e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1419960 AT3G28050.1 42.400 250 118 6 7 237 122 364 3.79e-57 186
Msa1419960 AT5G40230.1 41.250 240 132 3 3 237 127 362 1.15e-55 182
Msa1419960 AT5G40240.1 40.598 234 130 3 3 231 126 355 2.58e-55 181
Msa1419960 AT5G40240.3 40.598 234 130 3 3 231 126 355 2.58e-55 181
Msa1419960 AT5G40240.2 40.598 234 130 3 3 231 140 369 6.92e-55 181
Msa1419960 AT3G28070.2 39.506 243 124 6 7 237 35 266 1.12e-46 156
Msa1419960 AT4G15540.1 43.868 212 109 1 8 219 128 329 3.15e-46 157
Msa1419960 AT4G15540.2 43.868 212 109 1 8 219 128 329 3.15e-46 157
Msa1419960 AT3G28070.1 39.506 243 124 6 7 237 127 358 8.11e-46 156
Msa1419960 AT3G28080.5 35.802 243 136 4 6 237 34 267 1.17e-45 153
Msa1419960 AT3G28080.7 35.802 243 136 4 6 237 34 267 1.17e-45 153
Msa1419960 AT3G28080.8 35.802 243 136 4 6 237 34 267 1.17e-45 153
Msa1419960 AT3G28080.6 35.802 243 136 4 6 237 34 267 1.17e-45 153
Msa1419960 AT3G28080.2 35.802 243 136 4 6 237 115 348 1.20e-44 153
Msa1419960 AT3G28080.1 35.802 243 136 4 6 237 123 356 1.27e-44 153
Msa1419960 AT3G28070.5 38.750 240 124 6 10 237 1 229 1.87e-44 149
Msa1419960 AT3G28080.9 35.146 239 135 4 10 237 1 230 1.48e-43 147
Msa1419960 AT5G40210.1 39.394 231 119 4 7 233 123 336 2.25e-43 149
Msa1419960 AT3G28100.1 38.136 236 130 4 7 233 124 352 3.21e-42 147
Msa1419960 AT3G28130.5 36.325 234 143 4 7 237 37 267 1.56e-41 143
Msa1419960 AT3G28130.1 36.325 234 143 4 7 237 37 267 1.56e-41 143
Msa1419960 AT3G28130.2 36.325 234 143 4 7 237 123 353 8.95e-41 143
Msa1419960 AT3G28130.3 35.498 231 143 4 10 237 1 228 1.92e-39 136
Msa1419960 AT1G21890.1 32.301 226 140 3 7 221 121 344 1.42e-37 135
Msa1419960 AT2G39510.1 35.648 216 134 3 7 219 118 331 6.15e-37 133
Msa1419960 AT4G08300.1 33.051 236 152 5 7 238 121 354 7.30e-37 133
Msa1419960 AT1G44800.1 30.870 230 154 4 7 233 121 348 3.40e-35 129
Msa1419960 AT5G07050.1 33.182 220 139 3 7 218 128 347 7.80e-35 128
Msa1419960 AT3G18200.1 31.193 218 144 3 6 221 14 227 7.99e-35 125
Msa1419960 AT3G28070.3 38.462 195 104 4 7 192 127 314 8.66e-35 126
Msa1419960 AT3G18200.2 31.193 218 144 3 6 221 144 357 1.30e-33 125
Msa1419960 AT3G30340.1 31.455 213 139 2 7 215 121 330 5.95e-32 120
Msa1419960 AT5G13670.1 28.837 215 146 4 6 215 117 329 3.47e-31 118
Msa1419960 AT4G08290.1 28.390 236 163 3 7 237 123 357 4.99e-31 118
Msa1419960 AT4G28040.1 31.481 216 131 5 10 222 123 324 8.77e-31 117
Msa1419960 AT4G28040.5 31.481 216 131 5 10 222 123 324 8.77e-31 117
Msa1419960 AT4G28040.3 31.481 216 131 5 10 222 123 324 8.77e-31 117
Msa1419960 AT4G28040.4 31.481 216 131 5 10 222 123 324 8.77e-31 117
Msa1419960 AT4G28040.2 31.481 216 131 5 10 222 123 324 8.77e-31 117
Msa1419960 AT1G09380.1 30.986 213 137 3 6 211 117 326 5.79e-30 115
Msa1419960 AT2G40900.1 30.275 218 144 3 7 221 121 333 9.85e-30 114
Msa1419960 AT4G01440.5 27.189 217 158 0 7 223 12 228 2.66e-29 110
Msa1419960 AT4G01440.2 27.189 217 158 0 7 223 12 228 2.66e-29 110
Msa1419960 AT1G70260.1 31.193 218 138 4 13 221 131 345 9.78e-29 112
Msa1419960 AT1G43650.1 30.476 210 143 2 7 216 117 323 1.68e-28 110
Msa1419960 AT4G30420.1 29.756 205 142 2 11 214 116 319 1.85e-28 111
Msa1419960 AT4G30420.2 29.756 205 142 2 11 214 126 329 2.50e-28 110
Msa1419960 AT4G01440.1 27.189 217 158 0 7 223 120 336 2.63e-28 110
Msa1419960 AT2G37460.1 30.263 228 155 4 7 232 125 350 4.54e-28 110
Msa1419960 AT1G21890.2 32.487 197 120 3 7 192 121 315 1.19e-27 108
Msa1419960 AT3G28080.4 31.818 242 93 5 6 237 34 213 1.48e-27 105
Msa1419960 AT5G64700.1 27.477 222 154 1 7 221 118 339 4.80e-27 107
Msa1419960 AT5G45370.1 30.734 218 140 3 11 227 134 341 8.37e-27 106
Msa1419960 AT3G28080.3 31.818 242 93 5 6 237 123 302 9.81e-27 105
Msa1419960 AT5G45370.6 29.614 233 147 5 11 227 32 263 2.13e-26 103
Msa1419960 AT5G45370.5 29.614 233 147 5 11 227 32 263 2.13e-26 103
Msa1419960 AT5G45370.3 29.461 241 151 6 5 227 66 305 3.42e-26 103
Msa1419960 AT4G19185.2 26.721 247 160 3 11 237 57 302 3.77e-26 103
Msa1419960 AT1G75500.1 26.606 218 151 3 6 215 129 345 5.35e-26 104
Msa1419960 AT1G75500.2 26.606 218 151 3 6 215 129 345 5.35e-26 104
Msa1419960 AT5G45370.2 29.614 233 147 5 11 227 134 365 8.97e-26 103
Msa1419960 AT5G45370.4 29.614 233 147 5 11 227 134 365 8.97e-26 103
Msa1419960 AT4G19185.1 26.721 247 160 3 11 237 135 380 9.42e-26 103
Msa1419960 AT3G45870.5 28.704 216 142 3 5 209 45 259 1.08e-25 102
Msa1419960 AT1G25270.1 30.290 241 150 5 7 238 113 344 1.27e-25 103
Msa1419960 AT3G53210.2 26.638 229 152 3 10 228 66 288 3.35e-25 101
Msa1419960 AT1G68170.1 29.098 244 150 3 6 238 112 343 9.88e-25 100
Msa1419960 AT1G68170.2 29.098 244 150 3 6 238 122 353 1.01e-24 100
Msa1419960 AT3G53210.1 26.638 229 152 3 10 228 123 345 1.03e-24 100
Msa1419960 AT3G56620.1 29.612 206 135 3 9 211 123 321 2.11e-24 100
Msa1419960 AT2G37450.3 30.603 232 158 2 7 237 26 255 4.89e-24 97.1
Msa1419960 AT3G45870.1 28.505 214 141 3 7 209 122 334 1.21e-23 98.2
Msa1419960 AT4G01440.3 28.042 189 136 0 7 195 120 308 1.71e-23 96.7
Msa1419960 AT2G37450.2 30.603 232 158 2 7 237 98 327 2.09e-23 96.7
Msa1419960 AT1G01070.2 29.204 226 146 5 7 225 79 297 4.77e-23 95.5
Msa1419960 AT1G01070.1 29.279 222 151 4 7 225 126 344 1.05e-22 95.5
Msa1419960 AT2G37450.1 30.588 170 117 1 69 237 119 288 3.55e-22 92.8
Msa1419960 AT4G01430.1 26.106 226 161 4 7 227 119 343 4.98e-22 93.6
Msa1419960 AT5G47470.1 27.753 227 154 4 10 232 144 364 5.14e-20 87.8
Msa1419960 AT5G47470.2 27.753 227 154 4 10 232 172 392 6.27e-20 87.8
Msa1419960 AT3G45870.6 27.273 198 132 3 6 192 46 242 2.44e-19 84.3
Msa1419960 AT3G45870.7 27.273 198 132 3 6 192 46 242 2.44e-19 84.3
Msa1419960 AT3G28060.1 37.815 119 58 4 82 192 44 154 3.57e-19 81.6
Msa1419960 AT4G01430.3 24.757 206 150 3 25 226 1 205 3.96e-19 83.2
Msa1419960 AT1G11450.1 25.359 209 154 2 7 214 34 241 4.04e-19 84.0
Msa1419960 AT1G11450.2 25.359 209 154 2 7 214 75 282 1.11e-18 83.6
Msa1419960 AT1G11450.5 25.359 209 154 2 7 214 82 289 1.14e-18 83.6
Msa1419960 AT5G47470.3 26.512 215 150 3 10 222 172 380 1.79e-18 83.6
Msa1419960 AT1G11450.3 25.359 209 154 2 7 214 126 333 1.97e-18 83.2
Msa1419960 AT1G60050.1 24.762 210 150 2 13 215 133 341 7.26e-18 82.0
Msa1419960 AT1G11460.1 23.923 209 158 1 7 214 126 334 1.15e-17 80.9
Msa1419960 AT3G45870.2 28.859 149 105 1 61 209 36 183 1.25e-17 79.3
Msa1419960 AT3G45870.8 26.943 193 129 3 11 192 126 317 1.33e-17 80.9
Msa1419960 AT4G08290.2 32.374 139 90 2 7 142 123 260 3.70e-17 79.0
Msa1419960 AT3G30340.2 33.099 142 88 2 7 144 121 259 1.75e-16 77.0
Msa1419960 AT4G01430.2 26.943 193 131 5 7 192 119 308 3.68e-14 70.9
Msa1419960 AT4G01450.2 28.365 208 145 1 7 214 120 323 8.11e-14 70.1
Msa1419960 AT3G28100.3 33.566 143 80 3 7 140 124 260 1.06e-13 68.9
Msa1419960 AT4G01440.4 28.986 138 98 0 7 144 120 257 1.37e-13 68.9
Msa1419960 AT4G01450.1 27.419 186 131 1 7 192 120 301 4.32e-13 68.2
Msa1419960 AT3G28130.4 31.618 136 90 2 7 139 123 258 1.56e-12 65.9
Msa1419960 AT1G11450.4 24.064 187 140 2 7 192 126 311 7.69e-12 64.3
Msa1419960 AT1G43650.2 30.070 143 97 2 7 149 117 256 1.42e-11 63.2
Msa1419960 AT4G01450.4 29.252 147 97 2 7 150 120 262 9.19e-11 60.8
Msa1419960 AT3G53210.3 26.761 142 91 2 10 144 123 258 9.45e-11 60.8

Find 36 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGAAATCAGATTGGATAAT+TGG 0.197562 tig0024733:+57010 Msa1419960:CDS
ACTTATTGGTGCAGCATTAT+TGG 0.203191 tig0024733:+58275 Msa1419960:intron
TCCAATCTGATTTCCCTAAA+AGG 0.218236 tig0024733:-57003 Msa1419960:intergenic
GGAGCTGCTATCATAGTTAT+TGG 0.234600 tig0024733:+58296 Msa1419960:CDS
AGTGCAATGACCACTCTTAA+AGG 0.236929 tig0024733:-58115 Msa1419960:intergenic
GTGTTTATCACTAGCTCTTC+TGG 0.247926 tig0024733:-57491 Msa1419960:intergenic
GGCACAGTGGTCTCTATTGC+AGG 0.308068 tig0024733:+56896 Msa1419960:CDS
AGCAGCCAGGCAAAAGTTAT+TGG 0.314638 tig0024733:+56875 Msa1419960:CDS
TTGAACATAGCTACATATAT+TGG 0.334507 tig0024733:-58091 Msa1419960:intergenic
TTGGGAGACAATCTTTATCT+TGG 0.387204 tig0024733:+58157 Msa1419960:CDS
CAAAAGCATGGATATATAGA+AGG 0.420278 tig0024733:+58409 Msa1419960:exon
ATATACAGACTTGGATTGTC+AGG 0.424821 tig0024733:+57462 Msa1419960:intron
ACAGATAGCAACTCTTTATC+AGG 0.429389 tig0024733:-57596 Msa1419960:intergenic
CAGAGGGAAATTCAAATGCT+TGG 0.454003 tig0024733:+57564 Msa1419960:CDS
TTAATGGCATCATTAATCAA+TGG 0.480091 tig0024733:-56950 Msa1419960:intergenic
TACCACAAAACAGCAACAAA+TGG 0.500109 tig0024733:-57513 Msa1419960:intergenic
AGTGGTCATTGCACTTAGCA+TGG 0.527230 tig0024733:+58123 Msa1419960:CDS
AATATAGAAATGGGAGCAAG+TGG 0.531385 tig0024733:+56974 Msa1419960:CDS
GAGACAATCTTTATCTTGGA+AGG 0.532255 tig0024733:+58161 Msa1419960:CDS
GTGGTCATTGCACTTAGCAT+GGG 0.547313 tig0024733:+58124 Msa1419960:CDS
TCTATTGTCAAACAAAAGCA+TGG 0.559816 tig0024733:+58397 Msa1419960:CDS
ACATGGGCATGTCGTAAGAA+AGG 0.565963 tig0024733:+58067 Msa1419960:CDS
GCACAGTGGTCTCTATTGCA+GGG 0.571242 tig0024733:+56897 Msa1419960:CDS
AGCATGGATATATAGAAGGA+TGG 0.583125 tig0024733:+58413 Msa1419960:exon
CACAGTGGTCTCTATTGCAG+GGG 0.584216 tig0024733:+56898 Msa1419960:CDS
TATACAGACTTGGATTGTCA+GGG 0.590593 tig0024733:+57463 Msa1419960:intron
TATGTTCAAACCTTTAAGAG+TGG 0.597273 tig0024733:+58105 Msa1419960:CDS
CTCTGCAATGAGAGCTACAG+TGG 0.603942 tig0024733:-57546 Msa1419960:intergenic
TGAAGAATGTTATACTCACA+TGG 0.605157 tig0024733:+58050 Msa1419960:CDS
CACTGTAGCTCTCATTGCAG+AGG 0.605688 tig0024733:+57547 Msa1419960:CDS
ACTGTAGCTCTCATTGCAGA+GGG 0.612952 tig0024733:+57548 Msa1419960:CDS
GATATGGGCACAAGCTCAAG+AGG 0.617122 tig0024733:+58331 Msa1419960:CDS
TGGTCATTGCACTTAGCATG+GGG 0.620952 tig0024733:+58125 Msa1419960:CDS
GAAGAATGTTATACTCACAT+GGG 0.641061 tig0024733:+58051 Msa1419960:CDS
GGCAAAAGTTATTGGCACAG+TGG 0.705210 tig0024733:+56883 Msa1419960:CDS
GGTCATTGCACTTAGCATGG+GGG 0.733530 tig0024733:+58126 Msa1419960:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATTTTTATAATTAAAAA+TGG + tig0024733:58248-58267 Msa1419960:intron 0.0%
!!! TTAATTTTTATAATTAAAAA+TGG + tig0024733:58248-58267 Msa1419960:intron 0.0%
!!! ATAATATTTCTAAAACTAAA+AGG - tig0024733:57941-57960 Msa1419960:intergenic 10.0%
!! TAAAAATTAATCAATAATCT+TGG - tig0024733:58238-58257 Msa1419960:intergenic 10.0%
!!! CATATATTTTTTTATCATAA+AGG + tig0024733:58518-58537 Msa1419960:three_prime_UTR 10.0%
!!! ATAATATTTCTAAAACTAAA+AGG - tig0024733:57941-57960 Msa1419960:intergenic 10.0%
!! TAAAAATTAATCAATAATCT+TGG - tig0024733:58238-58257 Msa1419960:intergenic 10.0%
!!! CATATATTTTTTTATCATAA+AGG + tig0024733:58518-58537 Msa1419960:three_prime_UTR 10.0%
!!! GATTTGTTATTCTTATTATT+AGG + tig0024733:57639-57658 Msa1419960:intron 15.0%
!!! ATAATTTTTCACAAATTTGT+TGG - tig0024733:58199-58218 Msa1419960:intergenic 15.0%
!!! TTAAAAATGGTTTAACTTAT+TGG + tig0024733:58261-58280 Msa1419960:intron 15.0%
!!! GATTTGTTATTCTTATTATT+AGG + tig0024733:57639-57658 Msa1419960:intron 15.0%
!!! ATAATTTTTCACAAATTTGT+TGG - tig0024733:58199-58218 Msa1419960:intergenic 15.0%
!!! TTAAAAATGGTTTAACTTAT+TGG + tig0024733:58261-58280 Msa1419960:intron 15.0%
!!! TATTTTTTCTTGTATTTGCA+AGG - tig0024733:56794-56813 Msa0196920:intergenic 20.0%
!!! TTAGTTGTGACATTTTATAA+AGG + tig0024733:56923-56942 Msa1419960:CDS 20.0%
!!! TAGTTGTGACATTTTATAAA+GGG + tig0024733:56924-56943 Msa1419960:CDS 20.0%
!! TGCCATTAAAAATATAGAAA+TGG + tig0024733:56964-56983 Msa1419960:CDS 20.0%
!! GCCATTAAAAATATAGAAAT+GGG + tig0024733:56965-56984 Msa1419960:CDS 20.0%
!!! TCCCATTTCTATATTTTTAA+TGG - tig0024733:56969-56988 Msa1419960:intergenic 20.0%
!!! AATTGTAGCTGTTTAAATTT+TGG + tig0024733:57962-57981 Msa1419960:intron 20.0%
!!! TATTTTTTCTTGTATTTGCA+AGG - tig0024733:56794-56813 Msa1419960:intergenic 20.0%
!!! TTAGTTGTGACATTTTATAA+AGG + tig0024733:56923-56942 Msa1419960:CDS 20.0%
!!! TAGTTGTGACATTTTATAAA+GGG + tig0024733:56924-56943 Msa1419960:CDS 20.0%
!! TGCCATTAAAAATATAGAAA+TGG + tig0024733:56964-56983 Msa1419960:CDS 20.0%
!! GCCATTAAAAATATAGAAAT+GGG + tig0024733:56965-56984 Msa1419960:CDS 20.0%
!!! TCCCATTTCTATATTTTTAA+TGG - tig0024733:56969-56988 Msa1419960:intergenic 20.0%
!!! AATTGTAGCTGTTTAAATTT+TGG + tig0024733:57962-57981 Msa1419960:intron 20.0%
! TTAATGGCATCATTAATCAA+TGG - tig0024733:56953-56972 Msa1419960:intergenic 25.0%
!!! ATACTAATAGTTTGTTTACC+TGG - tig0024733:57087-57106 Msa1419960:intergenic 25.0%
!!! TTTTTTGTCAAGTAGTTTAG+TGG - tig0024733:57815-57834 Msa1419960:intergenic 25.0%
!!! CTGTTTAAATTTTGGTTTTG+TGG + tig0024733:57970-57989 Msa1419960:intron 25.0%
! TGTGGTTATTCATTTAATCA+TGG + tig0024733:57988-58007 Msa1419960:intron 25.0%
! AGTTGCCTATAAATGATTAA+AGG - tig0024733:58017-58036 Msa1419960:intergenic 25.0%
! TTGAACATAGCTACATATAT+TGG - tig0024733:58094-58113 Msa1419960:intergenic 25.0%
! TTAATGGCATCATTAATCAA+TGG - tig0024733:56953-56972 Msa1419960:intergenic 25.0%
!!! ATACTAATAGTTTGTTTACC+TGG - tig0024733:57087-57106 Msa1419960:intergenic 25.0%
!!! TTTTTTGTCAAGTAGTTTAG+TGG - tig0024733:57815-57834 Msa1419960:intergenic 25.0%
!!! CTGTTTAAATTTTGGTTTTG+TGG + tig0024733:57970-57989 Msa1419960:intron 25.0%
! TGTGGTTATTCATTTAATCA+TGG + tig0024733:57988-58007 Msa1419960:intron 25.0%
! AGTTGCCTATAAATGATTAA+AGG - tig0024733:58017-58036 Msa1419960:intergenic 25.0%
! TTGAACATAGCTACATATAT+TGG - tig0024733:58094-58113 Msa1419960:intergenic 25.0%
!! TTCTCTTTTGTTTATTGTCC+AGG + tig0024733:57066-57085 Msa1419960:CDS 30.0%
GATATGATAAAGCATGTTTC+CGG - tig0024733:57406-57425 Msa1419960:intergenic 30.0%
ACATGCTTTATCATATCGAT+AGG + tig0024733:57409-57428 Msa1419960:intron 30.0%
CATGCTTTATCATATCGATA+GGG + tig0024733:57410-57429 Msa1419960:intron 30.0%
ATGCTTTATCATATCGATAG+GGG + tig0024733:57411-57430 Msa1419960:intron 30.0%
! TAAGCTAACGTAGACTTTTA+AGG + tig0024733:57911-57930 Msa1419960:intron 30.0%
! AAGCTAACGTAGACTTTTAA+GGG + tig0024733:57912-57931 Msa1419960:intron 30.0%
! TCATTTATAGGCAACTTTTG+TGG + tig0024733:58021-58040 Msa1419960:intron 30.0%
TGAAGAATGTTATACTCACA+TGG + tig0024733:58050-58069 Msa1419960:CDS 30.0%
GAAGAATGTTATACTCACAT+GGG + tig0024733:58051-58070 Msa1419960:CDS 30.0%
! TATGTTCAAACCTTTAAGAG+TGG + tig0024733:58105-58124 Msa1419960:CDS 30.0%
! TTGGATTTTATGCTGTGATA+TGG + tig0024733:58315-58334 Msa1419960:CDS 30.0%
! TGGATTTTATGCTGTGATAT+GGG + tig0024733:58316-58335 Msa1419960:CDS 30.0%
!! TGCTTTTGTTTGACAATAGA+GGG - tig0024733:58397-58416 Msa1419960:intergenic 30.0%
!! ATGCTTTTGTTTGACAATAG+AGG - tig0024733:58398-58417 Msa1419960:intergenic 30.0%
TCTATTGTCAAACAAAAGCA+TGG + tig0024733:58397-58416 Msa1419960:CDS 30.0%
! CAAAAGCATGGATATATAGA+AGG + tig0024733:58409-58428 Msa1419960:exon 30.0%
!! TTCTCTTTTGTTTATTGTCC+AGG + tig0024733:57066-57085 Msa1419960:CDS 30.0%
GATATGATAAAGCATGTTTC+CGG - tig0024733:57406-57425 Msa1419960:intergenic 30.0%
ACATGCTTTATCATATCGAT+AGG + tig0024733:57409-57428 Msa1419960:intron 30.0%
CATGCTTTATCATATCGATA+GGG + tig0024733:57410-57429 Msa1419960:intron 30.0%
ATGCTTTATCATATCGATAG+GGG + tig0024733:57411-57430 Msa1419960:intron 30.0%
! TAAGCTAACGTAGACTTTTA+AGG + tig0024733:57911-57930 Msa1419960:intron 30.0%
! AAGCTAACGTAGACTTTTAA+GGG + tig0024733:57912-57931 Msa1419960:intron 30.0%
! TCATTTATAGGCAACTTTTG+TGG + tig0024733:58021-58040 Msa1419960:intron 30.0%
TGAAGAATGTTATACTCACA+TGG + tig0024733:58050-58069 Msa1419960:CDS 30.0%
GAAGAATGTTATACTCACAT+GGG + tig0024733:58051-58070 Msa1419960:CDS 30.0%
! TATGTTCAAACCTTTAAGAG+TGG + tig0024733:58105-58124 Msa1419960:CDS 30.0%
! TTGGATTTTATGCTGTGATA+TGG + tig0024733:58315-58334 Msa1419960:CDS 30.0%
! TGGATTTTATGCTGTGATAT+GGG + tig0024733:58316-58335 Msa1419960:CDS 30.0%
!! TGCTTTTGTTTGACAATAGA+GGG - tig0024733:58397-58416 Msa1419960:intergenic 30.0%
!! ATGCTTTTGTTTGACAATAG+AGG - tig0024733:58398-58417 Msa1419960:intergenic 30.0%
TCTATTGTCAAACAAAAGCA+TGG + tig0024733:58397-58416 Msa1419960:CDS 30.0%
! CAAAAGCATGGATATATAGA+AGG + tig0024733:58409-58428 Msa1419960:exon 30.0%
! ATACTGTGATGTGCATTTTC+AGG + tig0024733:56825-56844 Msa1419960:CDS 35.0%
AATATAGAAATGGGAGCAAG+TGG + tig0024733:56974-56993 Msa1419960:CDS 35.0%
! CAAGTGGAGTTTTCCTTTTA+GGG + tig0024733:56990-57009 Msa1419960:CDS 35.0%
!! TCCTTTTAGGGAAATCAGAT+TGG + tig0024733:57002-57021 Msa1419960:CDS 35.0%
TCCAATCTGATTTCCCTAAA+AGG - tig0024733:57006-57025 Msa1419960:intergenic 35.0%
GGGAAATCAGATTGGATAAT+TGG + tig0024733:57010-57029 Msa1419960:CDS 35.0%
AAGAGAACCACAAGTAAATG+TGG + tig0024733:57150-57169 Msa1419960:intron 35.0%
GACCATAATTAAATCCGCAT+CGG - tig0024733:57176-57195 Msa1419960:intergenic 35.0%
CAAAATCGTAGTTGCAATTG+CGG + tig0024733:57238-57257 Msa1419960:intron 35.0%
TGAATGTTGCCACAAAACAA+TGG + tig0024733:57348-57367 Msa1419960:intron 35.0%
! CACAACGTGTAATTTAGAAC+CGG + tig0024733:57384-57403 Msa1419960:intron 35.0%
CAAGTCTGTATATACATCGA+TGG - tig0024733:57455-57474 Msa1419960:intergenic 35.0%
CATCGATGTATATACAGACT+TGG + tig0024733:57453-57472 Msa1419960:intron 35.0%
ATATACAGACTTGGATTGTC+AGG + tig0024733:57462-57481 Msa1419960:intron 35.0%
TATACAGACTTGGATTGTCA+GGG + tig0024733:57463-57482 Msa1419960:intron 35.0%
TACCACAAAACAGCAACAAA+TGG - tig0024733:57516-57535 Msa1419960:intergenic 35.0%
ACAGATAGCAACTCTTTATC+AGG - tig0024733:57599-57618 Msa1419960:intergenic 35.0%
GACGTTGCATATTATATGCA+GGG + tig0024733:57732-57751 Msa1419960:intron 35.0%
CATTTAAATGTGGAGAAGTG+AGG - tig0024733:57780-57799 Msa1419960:intergenic 35.0%
AGAGCTCACACATTTAAATG+TGG - tig0024733:57790-57809 Msa1419960:intergenic 35.0%
GGCTGCCTTTAATCATTTAT+AGG + tig0024733:58009-58028 Msa1419960:intron 35.0%
! TAGCATGGGGGTAATATTTT+TGG + tig0024733:58138-58157 Msa1419960:CDS 35.0%
! AGCATGGGGGTAATATTTTT+GGG + tig0024733:58139-58158 Msa1419960:CDS 35.0%
TTGGGAGACAATCTTTATCT+TGG + tig0024733:58157-58176 Msa1419960:CDS 35.0%
GAGACAATCTTTATCTTGGA+AGG + tig0024733:58161-58180 Msa1419960:CDS 35.0%
ACTTATTGGTGCAGCATTAT+TGG + tig0024733:58275-58294 Msa1419960:intron 35.0%
!! GCTTTTGTTTGACAATAGAG+GGG - tig0024733:58396-58415 Msa1419960:intergenic 35.0%
AGCATGGATATATAGAAGGA+TGG + tig0024733:58413-58432 Msa1419960:exon 35.0%
!!! CTTTTCTAAGGTGGTAAACA+TGG + tig0024733:58444-58463 Msa1419960:three_prime_UTR 35.0%
! ATACTGTGATGTGCATTTTC+AGG + tig0024733:56825-56844 Msa1419960:CDS 35.0%
AATATAGAAATGGGAGCAAG+TGG + tig0024733:56974-56993 Msa1419960:CDS 35.0%
! CAAGTGGAGTTTTCCTTTTA+GGG + tig0024733:56990-57009 Msa1419960:CDS 35.0%
!! TCCTTTTAGGGAAATCAGAT+TGG + tig0024733:57002-57021 Msa1419960:CDS 35.0%
TCCAATCTGATTTCCCTAAA+AGG - tig0024733:57006-57025 Msa1419960:intergenic 35.0%
GGGAAATCAGATTGGATAAT+TGG + tig0024733:57010-57029 Msa1419960:CDS 35.0%
AAGAGAACCACAAGTAAATG+TGG + tig0024733:57150-57169 Msa1419960:intron 35.0%
GACCATAATTAAATCCGCAT+CGG - tig0024733:57176-57195 Msa1419960:intergenic 35.0%
CAAAATCGTAGTTGCAATTG+CGG + tig0024733:57238-57257 Msa1419960:intron 35.0%
TGAATGTTGCCACAAAACAA+TGG + tig0024733:57348-57367 Msa1419960:intron 35.0%
! CACAACGTGTAATTTAGAAC+CGG + tig0024733:57384-57403 Msa1419960:intron 35.0%
CAAGTCTGTATATACATCGA+TGG - tig0024733:57455-57474 Msa1419960:intergenic 35.0%
CATCGATGTATATACAGACT+TGG + tig0024733:57453-57472 Msa1419960:intron 35.0%
ATATACAGACTTGGATTGTC+AGG + tig0024733:57462-57481 Msa1419960:intron 35.0%
TATACAGACTTGGATTGTCA+GGG + tig0024733:57463-57482 Msa1419960:intron 35.0%
TACCACAAAACAGCAACAAA+TGG - tig0024733:57516-57535 Msa1419960:intergenic 35.0%
ACAGATAGCAACTCTTTATC+AGG - tig0024733:57599-57618 Msa1419960:intergenic 35.0%
GACGTTGCATATTATATGCA+GGG + tig0024733:57732-57751 Msa1419960:intron 35.0%
CATTTAAATGTGGAGAAGTG+AGG - tig0024733:57780-57799 Msa1419960:intergenic 35.0%
AGAGCTCACACATTTAAATG+TGG - tig0024733:57790-57809 Msa1419960:intergenic 35.0%
GGCTGCCTTTAATCATTTAT+AGG + tig0024733:58009-58028 Msa1419960:intron 35.0%
! TAGCATGGGGGTAATATTTT+TGG + tig0024733:58138-58157 Msa1419960:CDS 35.0%
! AGCATGGGGGTAATATTTTT+GGG + tig0024733:58139-58158 Msa1419960:CDS 35.0%
TTGGGAGACAATCTTTATCT+TGG + tig0024733:58157-58176 Msa1419960:CDS 35.0%
GAGACAATCTTTATCTTGGA+AGG + tig0024733:58161-58180 Msa1419960:CDS 35.0%
ACTTATTGGTGCAGCATTAT+TGG + tig0024733:58275-58294 Msa1419960:intron 35.0%
!! GCTTTTGTTTGACAATAGAG+GGG - tig0024733:58396-58415 Msa1419960:intergenic 35.0%
AGCATGGATATATAGAAGGA+TGG + tig0024733:58413-58432 Msa1419960:exon 35.0%
!!! CTTTTCTAAGGTGGTAAACA+TGG + tig0024733:58444-58463 Msa1419960:three_prime_UTR 35.0%
!! TGTGATGTGCATTTTCAGGA+TGG + tig0024733:56829-56848 Msa1419960:CDS 40.0%
! TATGAAAAAGCATAGCAGCC+AGG + tig0024733:56862-56881 Msa1419960:CDS 40.0%
! GCAAGTGGAGTTTTCCTTTT+AGG + tig0024733:56989-57008 Msa1419960:CDS 40.0%
GCGGATTTAATTATGGTCGT+AGG + tig0024733:57178-57197 Msa1419960:intron 40.0%
AACCGTAATAGCTGTTGCAT+TGG + tig0024733:57314-57333 Msa1419960:intron 40.0%
AGCCAATGCAACAGCTATTA+CGG - tig0024733:57319-57338 Msa1419960:intergenic 40.0%
!! TGTTGCGAACCATTGTTTTG+TGG - tig0024733:57360-57379 Msa1419960:intergenic 40.0%
! GTGTTTATCACTAGCTCTTC+TGG - tig0024733:57494-57513 Msa1419960:intergenic 40.0%
!!! CACCATTTGTTGCTGTTTTG+TGG + tig0024733:57511-57530 Msa1419960:CDS 40.0%
CAGAGGGAAATTCAAATGCT+TGG + tig0024733:57564-57583 Msa1419960:CDS 40.0%
GGACGTTGCATATTATATGC+AGG + tig0024733:57731-57750 Msa1419960:intron 40.0%
TGCATATTATATGCAGGGAC+CGG + tig0024733:57737-57756 Msa1419960:intron 40.0%
AGTGCAATGACCACTCTTAA+AGG - tig0024733:58118-58137 Msa1419960:intergenic 40.0%
GGAGCTGCTATCATAGTTAT+TGG + tig0024733:58296-58315 Msa1419960:CDS 40.0%
!! ATGGAGACTCTGCTTTTCTA+AGG + tig0024733:58432-58451 Msa1419960:three_prime_UTR 40.0%
!! TGTGATGTGCATTTTCAGGA+TGG + tig0024733:56829-56848 Msa1419960:CDS 40.0%
! TATGAAAAAGCATAGCAGCC+AGG + tig0024733:56862-56881 Msa1419960:CDS 40.0%
! GCAAGTGGAGTTTTCCTTTT+AGG + tig0024733:56989-57008 Msa1419960:CDS 40.0%
GCGGATTTAATTATGGTCGT+AGG + tig0024733:57178-57197 Msa1419960:intron 40.0%
AACCGTAATAGCTGTTGCAT+TGG + tig0024733:57314-57333 Msa1419960:intron 40.0%
AGCCAATGCAACAGCTATTA+CGG - tig0024733:57319-57338 Msa1419960:intergenic 40.0%
!! TGTTGCGAACCATTGTTTTG+TGG - tig0024733:57360-57379 Msa1419960:intergenic 40.0%
! GTGTTTATCACTAGCTCTTC+TGG - tig0024733:57494-57513 Msa1419960:intergenic 40.0%
!!! CACCATTTGTTGCTGTTTTG+TGG + tig0024733:57511-57530 Msa1419960:CDS 40.0%
CAGAGGGAAATTCAAATGCT+TGG + tig0024733:57564-57583 Msa1419960:CDS 40.0%
GGACGTTGCATATTATATGC+AGG + tig0024733:57731-57750 Msa1419960:intron 40.0%
TGCATATTATATGCAGGGAC+CGG + tig0024733:57737-57756 Msa1419960:intron 40.0%
AGTGCAATGACCACTCTTAA+AGG - tig0024733:58118-58137 Msa1419960:intergenic 40.0%
GGAGCTGCTATCATAGTTAT+TGG + tig0024733:58296-58315 Msa1419960:CDS 40.0%
!! ATGGAGACTCTGCTTTTCTA+AGG + tig0024733:58432-58451 Msa1419960:three_prime_UTR 40.0%
AGCAGCCAGGCAAAAGTTAT+TGG + tig0024733:56875-56894 Msa1419960:CDS 45.0%
! CTGTGCCAATAACTTTTGCC+TGG - tig0024733:56883-56902 Msa1419960:intergenic 45.0%
GGCAAAAGTTATTGGCACAG+TGG + tig0024733:56883-56902 Msa1419960:CDS 45.0%
! GGTGCTTTTCTTCTTGCAGT+TGG + tig0024733:57031-57050 Msa1419960:CDS 45.0%
ACAAGTAAATGTGGCCGATG+CGG + tig0024733:57159-57178 Msa1419960:intron 45.0%
GGCCGATGCGGATTTAATTA+TGG + tig0024733:57171-57190 Msa1419960:intron 45.0%
GCAATTGCGGCGCAATATAA+AGG + tig0024733:57251-57270 Msa1419960:intron 45.0%
ACTGTAGCTCTCATTGCAGA+GGG + tig0024733:57548-57567 Msa1419960:CDS 45.0%
TACCAACTGAGCTAAGCTCA+CGG - tig0024733:57710-57729 Msa1419960:intergenic 45.0%
! TGAGCTTAGCTCAGTTGGTA+GGG + tig0024733:57710-57729 Msa1419960:intron 45.0%
ACATGGGCATGTCGTAAGAA+AGG + tig0024733:58067-58086 Msa1419960:CDS 45.0%
AGTGGTCATTGCACTTAGCA+TGG + tig0024733:58123-58142 Msa1419960:CDS 45.0%
GTGGTCATTGCACTTAGCAT+GGG + tig0024733:58124-58143 Msa1419960:CDS 45.0%
TGGTCATTGCACTTAGCATG+GGG + tig0024733:58125-58144 Msa1419960:CDS 45.0%
!! GAGACTCTGCTTTTCTAAGG+TGG + tig0024733:58435-58454 Msa1419960:three_prime_UTR 45.0%
AGCAGCCAGGCAAAAGTTAT+TGG + tig0024733:56875-56894 Msa1419960:CDS 45.0%
! CTGTGCCAATAACTTTTGCC+TGG - tig0024733:56883-56902 Msa1419960:intergenic 45.0%
GGCAAAAGTTATTGGCACAG+TGG + tig0024733:56883-56902 Msa1419960:CDS 45.0%
! GGTGCTTTTCTTCTTGCAGT+TGG + tig0024733:57031-57050 Msa1419960:CDS 45.0%
ACAAGTAAATGTGGCCGATG+CGG + tig0024733:57159-57178 Msa1419960:intron 45.0%
GGCCGATGCGGATTTAATTA+TGG + tig0024733:57171-57190 Msa1419960:intron 45.0%
GCAATTGCGGCGCAATATAA+AGG + tig0024733:57251-57270 Msa1419960:intron 45.0%
ACTGTAGCTCTCATTGCAGA+GGG + tig0024733:57548-57567 Msa1419960:CDS 45.0%
TACCAACTGAGCTAAGCTCA+CGG - tig0024733:57710-57729 Msa1419960:intergenic 45.0%
! TGAGCTTAGCTCAGTTGGTA+GGG + tig0024733:57710-57729 Msa1419960:intron 45.0%
ACATGGGCATGTCGTAAGAA+AGG + tig0024733:58067-58086 Msa1419960:CDS 45.0%
AGTGGTCATTGCACTTAGCA+TGG + tig0024733:58123-58142 Msa1419960:CDS 45.0%
GTGGTCATTGCACTTAGCAT+GGG + tig0024733:58124-58143 Msa1419960:CDS 45.0%
TGGTCATTGCACTTAGCATG+GGG + tig0024733:58125-58144 Msa1419960:CDS 45.0%
!! GAGACTCTGCTTTTCTAAGG+TGG + tig0024733:58435-58454 Msa1419960:three_prime_UTR 45.0%
!! AAAAAAAAATTGTATATTAA+TGG + tig0024733:58541-58560 Msa1419960:three_prime_UTR 5.0%
!! AAAAAAAAATTGTATATTAA+TGG + tig0024733:58541-58560 Msa1419960:three_prime_UTR 5.0%
GCACAGTGGTCTCTATTGCA+GGG + tig0024733:56897-56916 Msa1419960:CDS 50.0%
CACAGTGGTCTCTATTGCAG+GGG + tig0024733:56898-56917 Msa1419960:CDS 50.0%
! GCATCGGCCACATTTACTTG+TGG - tig0024733:57160-57179 Msa1419960:intergenic 50.0%
CTCTGCAATGAGAGCTACAG+TGG - tig0024733:57549-57568 Msa1419960:intergenic 50.0%
CACTGTAGCTCTCATTGCAG+AGG + tig0024733:57547-57566 Msa1419960:CDS 50.0%
ACCAACTGAGCTAAGCTCAC+GGG - tig0024733:57709-57728 Msa1419960:intergenic 50.0%
GTGAGCTTAGCTCAGTTGGT+AGG + tig0024733:57709-57728 Msa1419960:intron 50.0%
! ATGTGGAGAAGTGAGGTGTC+CGG - tig0024733:57773-57792 Msa1419960:intergenic 50.0%
GGTCATTGCACTTAGCATGG+GGG + tig0024733:58126-58145 Msa1419960:CDS 50.0%
GATATGGGCACAAGCTCAAG+AGG + tig0024733:58331-58350 Msa1419960:CDS 50.0%
GCACAGTGGTCTCTATTGCA+GGG + tig0024733:56897-56916 Msa1419960:CDS 50.0%
CACAGTGGTCTCTATTGCAG+GGG + tig0024733:56898-56917 Msa1419960:CDS 50.0%
! GCATCGGCCACATTTACTTG+TGG - tig0024733:57160-57179 Msa1419960:intergenic 50.0%
CTCTGCAATGAGAGCTACAG+TGG - tig0024733:57549-57568 Msa1419960:intergenic 50.0%
CACTGTAGCTCTCATTGCAG+AGG + tig0024733:57547-57566 Msa1419960:CDS 50.0%
ACCAACTGAGCTAAGCTCAC+GGG - tig0024733:57709-57728 Msa1419960:intergenic 50.0%
GTGAGCTTAGCTCAGTTGGT+AGG + tig0024733:57709-57728 Msa1419960:intron 50.0%
! ATGTGGAGAAGTGAGGTGTC+CGG - tig0024733:57773-57792 Msa1419960:intergenic 50.0%
GGTCATTGCACTTAGCATGG+GGG + tig0024733:58126-58145 Msa1419960:CDS 50.0%
GATATGGGCACAAGCTCAAG+AGG + tig0024733:58331-58350 Msa1419960:CDS 50.0%
GGCACAGTGGTCTCTATTGC+AGG + tig0024733:56896-56915 Msa1419960:CDS 55.0%
TCCCGTGAGCTTAGCTCAGT+TGG + tig0024733:57705-57724 Msa1419960:intron 55.0%
AGGGACCGGTGTTTGAACTC+CGG + tig0024733:57751-57770 Msa1419960:intron 55.0%
GGTGTCCGGAGTTCAAACAC+CGG - tig0024733:57759-57778 Msa1419960:intergenic 55.0%
GGCACAGTGGTCTCTATTGC+AGG + tig0024733:56896-56915 Msa1419960:CDS 55.0%
TCCCGTGAGCTTAGCTCAGT+TGG + tig0024733:57705-57724 Msa1419960:intron 55.0%
AGGGACCGGTGTTTGAACTC+CGG + tig0024733:57751-57770 Msa1419960:intron 55.0%
GGTGTCCGGAGTTCAAACAC+CGG - tig0024733:57759-57778 Msa1419960:intergenic 55.0%
Chromosome Type Strat End Strand Name
tig0024733 gene 56774 58575 56774 ID=Msa1419960;Name=Msa1419960
tig0024733 mRNA 56774 58575 56774 ID=Msa1419960-mRNA-1;Parent=Msa1419960;Name=Msa1419960-mRNA-1;_AED=0.35;_eAED=0.35;_QI=47|0.66|0.5|1|1|1|4|148|238
tig0024733 exon 56774 57087 56774 ID=Msa1419960-mRNA-1:exon:1193;Parent=Msa1419960-mRNA-1
tig0024733 exon 57470 57628 57470 ID=Msa1419960-mRNA-1:exon:1194;Parent=Msa1419960-mRNA-1
tig0024733 exon 58031 58182 58031 ID=Msa1419960-mRNA-1:exon:1195;Parent=Msa1419960-mRNA-1
tig0024733 exon 58289 58575 58289 ID=Msa1419960-mRNA-1:exon:1196;Parent=Msa1419960-mRNA-1
tig0024733 five_prime_UTR 56774 56820 56774 ID=Msa1419960-mRNA-1:five_prime_utr;Parent=Msa1419960-mRNA-1
tig0024733 CDS 56821 57087 56821 ID=Msa1419960-mRNA-1:cds;Parent=Msa1419960-mRNA-1
tig0024733 CDS 57470 57628 57470 ID=Msa1419960-mRNA-1:cds;Parent=Msa1419960-mRNA-1
tig0024733 CDS 58031 58182 58031 ID=Msa1419960-mRNA-1:cds;Parent=Msa1419960-mRNA-1
tig0024733 CDS 58289 58427 58289 ID=Msa1419960-mRNA-1:cds;Parent=Msa1419960-mRNA-1
tig0024733 three_prime_UTR 58428 58575 58428 ID=Msa1419960-mRNA-1:three_prime_utr;Parent=Msa1419960-mRNA-1
Gene Sequence

>Msa1419960

ATGAATACTGTGATGTGCATTTTCAGGATGGAAGTTCTAAATATGAAAAAGCATAGCAGCCAGGCAAAAGTTATTGGCACAGTGGTCTCTATTGCAGGGGCATTAGTTGTGACATTTTATAAAGGGATACCATTGATTAATGATGCCATTAAAAATATAGAAATGGGAGCAAGTGGAGTTTTCCTTTTAGGGAAATCAGATTGGATAATTGGTGCTTTTCTTCTTGCAGTTGGTAGCTTTTGTCTTTCTCTTTTGTTTATTGTCCAGACTTGGATTGTCAGGGATTATCCAGAAGAGCTAGTGATAAACACCATTTGTTGCTGTTTTGTGGTAATCATATCTACCACTGTAGCTCTCATTGCAGAGGGAAATTCAAATGCTTGGAGACTCAGACCTGATAAAGAGTTGCTATCTGTGTGTTACTCAGCAACTTTTGTGGAATCAGTGAAGAATGTTATACTCACATGGGCATGTCGTAAGAAAGGACCAATATATGTAGCTATGTTCAAACCTTTAAGAGTGGTCATTGCACTTAGCATGGGGGTAATATTTTTGGGAGACAATCTTTATCTTGGAAGCATTATTGGAGCTGCTATCATAGTTATTGGATTTTATGCTGTGATATGGGCACAAGCTCAAGAGGAACACACAACAAGTGAAAACTTGTTGTCATCTTCTTCAGCCCCTCTATTGTCAAACAAAAGCATGGATATATAG

Protein sequence

>Msa1419960

MNTVMCIFRMEVLNMKKHSSQAKVIGTVVSIAGALVVTFYKGIPLINDAIKNIEMGASGVFLLGKSDWIIGAFLLAVGSFCLSLLFIVQTWIVRDYPEELVINTICCCFVVIISTTVALIAEGNSNAWRLRPDKELLSVCYSATFVESVKNVILTWACRKKGPIYVAMFKPLRVVIALSMGVIFLGDNLYLGSIIGAAIIVIGFYAVIWAQAQEEHTTSENLLSSSSAPLLSNKSMDI*