Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0682660 | XP_013456002.1 | 98.854 | 698 | 7 | 1 | 1 | 697 | 1 | 698 | 0.0 | 1428 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0682660 | sp|Q653H7|ARFR_ORYSJ | 57.082 | 706 | 244 | 12 | 2 | 669 | 14 | 698 | 0.0 | 774 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0682660 | A0A072ULT3 | 98.854 | 698 | 7 | 1 | 1 | 697 | 1 | 698 | 0.0 | 1428 |
Gene ID | Type | Classification |
---|---|---|
Msa0682660 | TF | B3-ARF |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0649980 | Msa0682660 | 0.858706 | 6.854567e-63 | -8.615850e-47 |
Msa0547140 | Msa0682660 | 0.840181 | 1.014972e-57 | -8.615850e-47 |
Msa0601850 | Msa0682660 | 0.843863 | 1.078583e-58 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0682660 | MtrunA17_Chr4g0028971 | 98.854 | 698 | 7 | 1 | 1 | 697 | 1 | 698 | 0.0 | 1428 |
Msa0682660 | MtrunA17_Chr2g0326761 | 71.034 | 725 | 156 | 20 | 1 | 697 | 1 | 699 | 0.0 | 978 |
Msa0682660 | MtrunA17_Chr1g0181211 | 58.874 | 693 | 219 | 14 | 9 | 664 | 24 | 687 | 0.0 | 763 |
Msa0682660 | MtrunA17_Chr1g0199681 | 58.957 | 575 | 204 | 14 | 1 | 554 | 83 | 646 | 0.0 | 597 |
Msa0682660 | MtrunA17_Chr7g0264171 | 55.453 | 541 | 214 | 13 | 9 | 536 | 28 | 554 | 0.0 | 570 |
Msa0682660 | MtrunA17_Chr3g0115271 | 41.786 | 560 | 295 | 13 | 9 | 558 | 16 | 554 | 2.57e-122 | 377 |
Msa0682660 | MtrunA17_Chr7g0264161 | 53.623 | 345 | 112 | 6 | 21 | 361 | 1 | 301 | 1.02e-118 | 357 |
Msa0682660 | MtrunA17_Chr5g0424931 | 39.920 | 501 | 233 | 16 | 12 | 493 | 19 | 470 | 1.84e-97 | 310 |
Msa0682660 | MtrunA17_Chr5g0417281 | 37.372 | 487 | 215 | 13 | 4 | 464 | 3 | 425 | 5.60e-86 | 280 |
Msa0682660 | MtrunA17_Chr5g0436761 | 38.174 | 482 | 210 | 14 | 1 | 463 | 1 | 413 | 3.16e-84 | 273 |
Msa0682660 | MtrunA17_Chr2g0285461 | 38.926 | 447 | 205 | 10 | 2 | 436 | 13 | 403 | 3.67e-83 | 281 |
Msa0682660 | MtrunA17_Chr8g0376771 | 39.013 | 446 | 205 | 10 | 2 | 436 | 13 | 402 | 1.19e-82 | 280 |
Msa0682660 | MtrunA17_Chr5g0433301 | 39.186 | 393 | 186 | 7 | 5 | 388 | 17 | 365 | 1.71e-79 | 270 |
Msa0682660 | MtrunA17_Chr2g0289221 | 40.541 | 370 | 138 | 9 | 9 | 361 | 17 | 321 | 1.58e-77 | 252 |
Msa0682660 | MtrunA17_Chr1g0156321 | 40.731 | 383 | 171 | 8 | 9 | 381 | 40 | 376 | 1.87e-77 | 265 |
Msa0682660 | MtrunA17_Chr2g0277461 | 35.463 | 454 | 211 | 11 | 3 | 447 | 4 | 384 | 3.96e-77 | 254 |
Msa0682660 | MtrunA17_Chr4g0046371 | 40.104 | 384 | 171 | 9 | 12 | 381 | 38 | 376 | 6.46e-77 | 260 |
Msa0682660 | MtrunA17_Chr8g0385791 | 38.847 | 399 | 185 | 7 | 12 | 399 | 59 | 409 | 1.43e-76 | 262 |
Msa0682660 | MtrunA17_Chr3g0109391 | 37.740 | 416 | 204 | 8 | 6 | 412 | 20 | 389 | 3.60e-76 | 261 |
Msa0682660 | MtrunA17_Chr1g0178011 | 36.946 | 406 | 186 | 10 | 9 | 401 | 9 | 357 | 5.20e-73 | 243 |
Msa0682660 | MtrunA17_Chr8g0346711 | 30.769 | 715 | 364 | 22 | 3 | 670 | 16 | 646 | 6.41e-73 | 249 |
Msa0682660 | MtrunA17_Chr4g0070181 | 38.015 | 413 | 193 | 10 | 3 | 404 | 14 | 374 | 4.58e-72 | 253 |
Msa0682660 | MtrunA17_Chr5g0417211 | 37.563 | 394 | 170 | 8 | 9 | 391 | 9 | 337 | 6.26e-72 | 239 |
Msa0682660 | MtrunA17_Chr2g0301251 | 38.010 | 392 | 184 | 7 | 3 | 383 | 14 | 357 | 2.30e-71 | 251 |
Msa0682660 | MtrunA17_Chr4g0029671 | 37.956 | 411 | 187 | 6 | 12 | 402 | 54 | 416 | 4.70e-71 | 246 |
Msa0682660 | MtrunA17_Chr2g0276781 | 36.989 | 465 | 203 | 14 | 12 | 440 | 23 | 433 | 2.01e-70 | 242 |
Msa0682660 | MtrunA17_Chr2g0326281 | 37.123 | 431 | 192 | 10 | 12 | 410 | 56 | 439 | 1.13e-69 | 243 |
Msa0682660 | MtrunA17_Chr7g0239061 | 37.028 | 424 | 199 | 14 | 1 | 409 | 3 | 373 | 2.22e-67 | 234 |
Msa0682660 | MtrunA17_Chr8g0389081 | 36.735 | 392 | 195 | 7 | 2 | 384 | 22 | 369 | 2.13e-63 | 228 |
Msa0682660 | MtrunA17_Chr2g0282961 | 48.826 | 213 | 100 | 2 | 6 | 209 | 47 | 259 | 9.11e-58 | 206 |
Msa0682660 | MtrunA17_Chr2g0282961 | 37.963 | 108 | 66 | 1 | 274 | 381 | 281 | 387 | 1.95e-18 | 89.7 |
Msa0682660 | MtrunA17_Chr5g0425261 | 35.930 | 398 | 170 | 14 | 9 | 387 | 9 | 340 | 7.92e-57 | 197 |
Msa0682660 | MtrunA17_Chr5g0424801 | 35.969 | 392 | 169 | 14 | 9 | 382 | 9 | 336 | 3.89e-56 | 196 |
Msa0682660 | MtrunA17_Chr4g0009751 | 49.528 | 212 | 99 | 4 | 7 | 211 | 14 | 224 | 2.41e-53 | 194 |
Msa0682660 | MtrunA17_Chr5g0424741 | 31.628 | 430 | 202 | 14 | 9 | 398 | 9 | 386 | 2.77e-48 | 178 |
Msa0682660 | MtrunA17_Chr2g0277531 | 32.162 | 370 | 170 | 13 | 7 | 361 | 15 | 318 | 6.34e-48 | 171 |
Msa0682660 | MtrunA17_Chr5g0425661 | 43.367 | 196 | 93 | 3 | 12 | 196 | 37 | 225 | 4.91e-47 | 166 |
Msa0682660 | MtrunA17_Chr8g0356211 | 30.619 | 307 | 155 | 7 | 116 | 422 | 2 | 250 | 3.16e-38 | 144 |
Msa0682660 | MtrunA17_Chr5g0425651 | 43.220 | 118 | 60 | 3 | 275 | 388 | 1 | 115 | 2.03e-21 | 90.5 |
Msa0682660 | MtrunA17_Chr5g0424791 | 32.432 | 148 | 89 | 4 | 58 | 204 | 14 | 151 | 7.72e-16 | 75.5 |
Msa0682660 | MtrunA17_Chr1g0178071 | 32.432 | 148 | 83 | 4 | 103 | 238 | 71 | 213 | 3.75e-11 | 65.1 |
Msa0682660 | MtrunA17_Chr8g0345771 | 39.000 | 100 | 59 | 2 | 103 | 202 | 167 | 264 | 8.10e-11 | 65.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0682660 | AT2G28350.1 | 58.108 | 740 | 217 | 21 | 3 | 697 | 2 | 693 | 0.0 | 753 |
Msa0682660 | AT4G30080.1 | 55.925 | 692 | 244 | 15 | 4 | 669 | 12 | 668 | 0.0 | 717 |
Msa0682660 | AT2G28350.2 | 57.644 | 713 | 209 | 21 | 3 | 670 | 2 | 666 | 0.0 | 714 |
Msa0682660 | AT1G77850.2 | 43.450 | 458 | 221 | 11 | 9 | 451 | 16 | 450 | 1.35e-115 | 360 |
Msa0682660 | AT1G77850.1 | 39.161 | 572 | 294 | 16 | 9 | 559 | 16 | 554 | 1.35e-115 | 360 |
Msa0682660 | AT1G30330.1 | 40.097 | 414 | 193 | 8 | 3 | 407 | 14 | 381 | 6.33e-81 | 276 |
Msa0682660 | AT1G30330.3 | 40.049 | 412 | 192 | 8 | 5 | 407 | 18 | 383 | 2.52e-80 | 275 |
Msa0682660 | AT1G30330.2 | 40.049 | 412 | 192 | 8 | 5 | 407 | 18 | 383 | 2.52e-80 | 275 |
Msa0682660 | AT5G37020.2 | 38.817 | 389 | 185 | 7 | 9 | 388 | 19 | 363 | 3.50e-79 | 268 |
Msa0682660 | AT5G37020.1 | 38.817 | 389 | 185 | 7 | 9 | 388 | 19 | 363 | 1.18e-78 | 268 |
Msa0682660 | AT1G59750.2 | 31.241 | 685 | 351 | 19 | 12 | 662 | 22 | 620 | 5.37e-78 | 263 |
Msa0682660 | AT2G33860.1 | 38.259 | 379 | 181 | 6 | 12 | 381 | 54 | 388 | 9.20e-76 | 255 |
Msa0682660 | AT5G60450.2 | 38.670 | 406 | 184 | 9 | 12 | 400 | 41 | 398 | 1.94e-75 | 258 |
Msa0682660 | AT5G60450.1 | 38.670 | 406 | 184 | 9 | 12 | 400 | 65 | 422 | 3.35e-75 | 258 |
Msa0682660 | AT5G62000.2 | 39.409 | 406 | 185 | 10 | 9 | 400 | 52 | 410 | 6.14e-74 | 256 |
Msa0682660 | AT5G62000.5 | 39.409 | 406 | 185 | 10 | 9 | 400 | 52 | 410 | 6.14e-74 | 256 |
Msa0682660 | AT5G62000.3 | 39.409 | 406 | 185 | 10 | 9 | 400 | 52 | 410 | 6.14e-74 | 256 |
Msa0682660 | AT5G62000.1 | 39.409 | 406 | 185 | 10 | 9 | 400 | 52 | 410 | 6.14e-74 | 256 |
Msa0682660 | AT5G62000.4 | 39.409 | 406 | 185 | 10 | 9 | 400 | 52 | 410 | 8.17e-74 | 255 |
Msa0682660 | AT1G59750.4 | 30.904 | 686 | 350 | 22 | 12 | 662 | 22 | 618 | 2.44e-71 | 245 |
Msa0682660 | AT1G59750.1 | 31.050 | 686 | 354 | 22 | 12 | 662 | 22 | 623 | 8.03e-71 | 243 |
Msa0682660 | AT1G59750.3 | 31.050 | 686 | 354 | 22 | 12 | 662 | 22 | 623 | 8.03e-71 | 243 |
Msa0682660 | AT2G46530.1 | 39.005 | 382 | 169 | 12 | 12 | 381 | 21 | 350 | 4.60e-67 | 232 |
Msa0682660 | AT2G46530.3 | 39.005 | 382 | 169 | 12 | 12 | 381 | 42 | 371 | 9.94e-67 | 231 |
Msa0682660 | AT1G19850.1 | 37.755 | 392 | 181 | 9 | 4 | 381 | 46 | 388 | 2.59e-66 | 235 |
Msa0682660 | AT1G19850.2 | 37.755 | 392 | 181 | 9 | 4 | 381 | 35 | 377 | 3.09e-66 | 235 |
Msa0682660 | AT3G61830.1 | 36.131 | 429 | 206 | 13 | 4 | 418 | 14 | 388 | 3.13e-65 | 227 |
Msa0682660 | AT1G35520.1 | 29.750 | 679 | 343 | 24 | 6 | 660 | 21 | 589 | 5.80e-61 | 215 |
Msa0682660 | AT1G34390.1 | 28.152 | 682 | 362 | 22 | 6 | 667 | 21 | 594 | 6.62e-59 | 209 |
Msa0682660 | AT4G23980.2 | 35.279 | 394 | 176 | 12 | 8 | 381 | 8 | 342 | 5.14e-58 | 207 |
Msa0682660 | AT4G23980.1 | 35.279 | 394 | 176 | 12 | 8 | 381 | 8 | 342 | 5.16e-58 | 208 |
Msa0682660 | AT1G35240.1 | 36.364 | 396 | 183 | 14 | 6 | 387 | 21 | 361 | 1.36e-57 | 206 |
Msa0682660 | AT1G34310.1 | 35.294 | 408 | 197 | 13 | 6 | 402 | 21 | 372 | 1.65e-57 | 205 |
Msa0682660 | AT1G19220.1 | 48.869 | 221 | 96 | 4 | 3 | 211 | 14 | 229 | 2.68e-57 | 211 |
Msa0682660 | AT1G19220.1 | 40.000 | 130 | 67 | 4 | 286 | 412 | 261 | 382 | 2.24e-17 | 87.4 |
Msa0682660 | AT5G37020.3 | 38.699 | 292 | 134 | 5 | 98 | 388 | 21 | 268 | 9.18e-57 | 206 |
Msa0682660 | AT1G35540.1 | 34.663 | 401 | 188 | 13 | 6 | 395 | 21 | 358 | 1.87e-56 | 203 |
Msa0682660 | AT1G34410.1 | 35.401 | 387 | 184 | 12 | 6 | 381 | 21 | 352 | 2.69e-56 | 202 |
Msa0682660 | AT5G20730.3 | 47.059 | 221 | 100 | 4 | 3 | 211 | 15 | 230 | 1.05e-55 | 206 |
Msa0682660 | AT5G20730.3 | 42.105 | 114 | 64 | 2 | 286 | 398 | 262 | 374 | 5.88e-17 | 85.9 |
Msa0682660 | AT5G20730.2 | 47.059 | 221 | 100 | 4 | 3 | 211 | 15 | 230 | 1.13e-55 | 206 |
Msa0682660 | AT5G20730.2 | 42.478 | 113 | 64 | 1 | 286 | 398 | 262 | 373 | 2.97e-18 | 90.1 |
Msa0682660 | AT5G20730.1 | 47.059 | 221 | 100 | 4 | 3 | 211 | 15 | 230 | 1.15e-55 | 206 |
Msa0682660 | AT5G20730.1 | 42.105 | 114 | 64 | 2 | 286 | 398 | 262 | 374 | 4.65e-17 | 86.3 |
Msa0682660 | AT2G33860.2 | 39.636 | 275 | 120 | 5 | 108 | 381 | 2 | 231 | 4.73e-54 | 192 |
Msa0682660 | AT3G61830.2 | 35.946 | 370 | 180 | 10 | 52 | 418 | 22 | 337 | 1.46e-52 | 191 |
Msa0682660 | AT1G34170.1 | 33.075 | 387 | 195 | 12 | 6 | 381 | 19 | 352 | 4.42e-52 | 188 |
Msa0682660 | AT2G46530.2 | 38.406 | 276 | 121 | 6 | 107 | 381 | 36 | 263 | 3.75e-46 | 172 |
Msa0682660 | AT1G34170.2 | 38.636 | 220 | 118 | 5 | 6 | 214 | 19 | 232 | 7.42e-42 | 159 |
Msa0682660 | AT1G34170.3 | 38.636 | 220 | 118 | 5 | 6 | 214 | 19 | 232 | 2.76e-41 | 159 |
Msa0682660 | AT1G43950.1 | 39.336 | 211 | 110 | 6 | 6 | 207 | 21 | 222 | 9.21e-38 | 140 |
Msa0682660 | ATMG00940.1 | 38.037 | 163 | 85 | 5 | 195 | 356 | 1 | 148 | 6.22e-22 | 93.6 |
Msa0682660 | AT2G36080.4 | 37.838 | 111 | 63 | 3 | 103 | 208 | 33 | 142 | 1.77e-11 | 63.9 |
Msa0682660 | AT2G36080.2 | 37.838 | 111 | 63 | 3 | 103 | 208 | 33 | 142 | 1.77e-11 | 63.9 |
Msa0682660 | AT2G36080.3 | 37.838 | 111 | 63 | 3 | 103 | 208 | 33 | 142 | 3.81e-11 | 64.3 |
Msa0682660 | AT2G36080.1 | 37.838 | 111 | 63 | 3 | 103 | 208 | 33 | 142 | 4.00e-11 | 64.3 |
Find 185 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTATGATCATGTGAAATTTA+AGG | 0.117603 | 4_4:+44601634 | Msa0682660:three_prime_UTR |
TTCTAGGATTAGTTGGTTTA+TGG | 0.143329 | 4_4:+44599414 | Msa0682660:CDS |
ATTCTTCTTAGACAAGAATT+TGG | 0.191481 | 4_4:+44598310 | Msa0682660:five_prime_UTR |
TCTTTCTTTGTTGGGGTGTT+AGG | 0.196783 | 4_4:+44598370 | Msa0682660:five_prime_UTR |
TTGAAACTGAAGACTCTTCT+AGG | 0.222931 | 4_4:+44599398 | Msa0682660:CDS |
GGAAAGTGAGAAAGGGTATT+TGG | 0.265159 | 4_4:+44598430 | Msa0682660:CDS |
TTGACAATTCTGACAGATTC+AGG | 0.268164 | 4_4:+44601343 | Msa0682660:CDS |
ACCCTTGACTTATCACTTCT+TGG | 0.269886 | 4_4:+44600836 | Msa0682660:CDS |
TTCTCCGTGGCGCCTTCTTC+AGG | 0.276881 | 4_4:+44599483 | Msa0682660:CDS |
TCATCTTGTGGATGGACTTC+AGG | 0.278431 | 4_4:+44599082 | Msa0682660:CDS |
CTAATACAAACATTGATCTA+AGG | 0.281084 | 4_4:+44598549 | Msa0682660:CDS |
AACAATGTAAATTGTGGAAT+TGG | 0.287100 | 4_4:+44599115 | Msa0682660:CDS |
AGTTGGAATCTTTCTTTGTT+GGG | 0.288375 | 4_4:+44598362 | Msa0682660:five_prime_UTR |
CAGGCATGATAAGCTTTCTT+TGG | 0.290621 | 4_4:-44600525 | None:intergenic |
TGGAATTCGTAGGGCGAAAA+AGG | 0.294025 | 4_4:+44599036 | Msa0682660:CDS |
GGGCCAAACAGCCCCTTCTT+TGG | 0.299415 | 4_4:+44600314 | Msa0682660:CDS |
TTCTTCAGAGAATCTGAAAA+TGG | 0.300038 | 4_4:-44598200 | None:intergenic |
GGAGCCAGGCATGCTCAATT+TGG | 0.301173 | 4_4:+44600368 | Msa0682660:CDS |
TAATAACGTTAACCAAGATT+TGG | 0.302684 | 4_4:+44601817 | Msa0682660:three_prime_UTR |
TGTGGATGGACTTCAGGTTC+TGG | 0.309717 | 4_4:+44599088 | Msa0682660:CDS |
AGAAGGCGCCACGGAGAATT+AGG | 0.313389 | 4_4:-44599478 | None:intergenic |
GGGAACAATTGCTTCTGTTC+AGG | 0.316761 | 4_4:+44599435 | Msa0682660:CDS |
CACCAGCAACAAGCTTCTTC+TGG | 0.317024 | 4_4:-44598970 | None:intergenic |
ATGAGGATTCAATGGTGTTC+TGG | 0.321716 | 4_4:+44599355 | Msa0682660:CDS |
ACTGAAGTTTATTGTTGTTA+AGG | 0.329691 | 4_4:-44600415 | None:intergenic |
TCTAGGATTAGTTGGTTTAT+GGG | 0.340586 | 4_4:+44599415 | Msa0682660:CDS |
CGCCGGCACTTGCTTACAAC+AGG | 0.344728 | 4_4:+44598929 | Msa0682660:CDS |
AATTGTGGAATTGGACCTTT+TGG | 0.346313 | 4_4:+44599124 | Msa0682660:CDS |
TGGCAACTTGGATTGGATAT+TGG | 0.355146 | 4_4:+44600773 | Msa0682660:CDS |
AAGTTGGAATCTTTCTTTGT+TGG | 0.356899 | 4_4:+44598361 | Msa0682660:five_prime_UTR |
TATGAACAGAATATATTTAG+AGG | 0.360155 | 4_4:+44601685 | Msa0682660:three_prime_UTR |
TAATGAAGCTTCTTCCTTTG+AGG | 0.360496 | 4_4:+44598654 | Msa0682660:CDS |
AAGAAGAAGAAAACAAATTC+AGG | 0.362993 | 4_4:+44598122 | Msa0682660:five_prime_UTR |
ATCATTCACTATGGTTAAAC+AGG | 0.363665 | 4_4:-44598169 | None:intergenic |
GAAATTTGAATCATTCACTA+TGG | 0.365496 | 4_4:-44598178 | None:intergenic |
GTGTCTGTCTGTGTTGTTGT+TGG | 0.367469 | 4_4:+44598012 | Msa0682660:five_prime_UTR |
AACAACAATAAACTTCAGTT+AGG | 0.369261 | 4_4:+44600419 | Msa0682660:CDS |
TTCACCACTGATTCTTTGTA+AGG | 0.370999 | 4_4:+44598580 | Msa0682660:CDS |
TTCTTCTTAGACAAGAATTT+GGG | 0.372036 | 4_4:+44598311 | Msa0682660:five_prime_UTR |
TTCTTCCTTGGTGGAGTGAA+AGG | 0.377163 | 4_4:-44600215 | None:intergenic |
GGTTGTTGGTGTTAAATTCA+TGG | 0.380615 | 4_4:+44598601 | Msa0682660:CDS |
TGTTATGGAAGCTGTGAAAT+TGG | 0.385027 | 4_4:+44599243 | Msa0682660:CDS |
AGTGAGGGCTGAAGATGTTA+TGG | 0.385830 | 4_4:+44599228 | Msa0682660:CDS |
AAACCAAAGAAGGGGCTGTT+TGG | 0.394320 | 4_4:-44600317 | None:intergenic |
AGACAAAGAGAAGTGGTTCT+TGG | 0.394810 | 4_4:+44600706 | Msa0682660:CDS |
CAATGCTCCTGCATGTATAC+AGG | 0.395010 | 4_4:+44600346 | Msa0682660:CDS |
AGGATGTGCACGGTGAGCTT+TGG | 0.396378 | 4_4:+44598876 | Msa0682660:CDS |
AAGACTCTTCTAGGATTAGT+TGG | 0.399400 | 4_4:+44599407 | Msa0682660:CDS |
TTAATGTGGGGTCCAAATCT+TGG | 0.402568 | 4_4:-44601829 | None:intergenic |
ACAGGTGCTGTTAAGCAAAT+TGG | 0.408215 | 4_4:+44600947 | Msa0682660:CDS |
GAGAATAAGACATTGAGAAA+TGG | 0.411485 | 4_4:+44599172 | Msa0682660:CDS |
CACTCCCGAGTTCTGTGTTA+AGG | 0.419777 | 4_4:+44599312 | Msa0682660:CDS |
AGGTGGTGGTGGTGATGGTT+TGG | 0.423416 | 4_4:+44598700 | Msa0682660:CDS |
TTCGCCACCACCGTCTGAAC+AGG | 0.425252 | 4_4:-44598854 | None:intergenic |
CTGATTCTTTGTAAGGTTGT+TGG | 0.426252 | 4_4:+44598587 | Msa0682660:CDS |
CTAATGCTGCTGAGTTTAGT+TGG | 0.428567 | 4_4:+44600753 | Msa0682660:CDS |
GCCTACTACTACAGGTTACA+TGG | 0.430758 | 4_4:+44600105 | Msa0682660:intron |
GGATAGTAAACAACTTCAAA+TGG | 0.432142 | 4_4:-44599280 | None:intergenic |
AGCACCTTGATGTGCATACT+AGG | 0.434168 | 4_4:+44600462 | Msa0682660:CDS |
ACGGTGAGCTTTGGAAGTTT+AGG | 0.437969 | 4_4:+44598885 | Msa0682660:CDS |
AGAAGAAAGAGTGTTAAAGT+TGG | 0.438808 | 4_4:+44598345 | Msa0682660:five_prime_UTR |
TGAGGATTCAATGGTGTTCT+GGG | 0.446254 | 4_4:+44599356 | Msa0682660:CDS |
TTCAATGGTGTTCTGGGATG+AGG | 0.448575 | 4_4:+44599362 | Msa0682660:CDS |
TCCTCCAAATTGAGCATGCC+TGG | 0.451469 | 4_4:-44600372 | None:intergenic |
GATGAAGGTGGTGGTGGTGA+TGG | 0.454860 | 4_4:+44598695 | Msa0682660:CDS |
GGAAACCGCAGCTTCTTCCT+TGG | 0.455567 | 4_4:-44600227 | None:intergenic |
CATTATGCAAATATGCTTAG+AGG | 0.456170 | 4_4:-44601547 | None:intergenic |
CAGCTATGGCATGCTTGTGC+TGG | 0.456859 | 4_4:+44598458 | Msa0682660:CDS |
AACCGCAGCTTCTTCCTTGG+TGG | 0.459037 | 4_4:-44600224 | None:intergenic |
TATCATGCCTGTTGAGTATC+GGG | 0.463632 | 4_4:+44600537 | Msa0682660:CDS |
TCAAGGTGCTGAATGTTAGT+AGG | 0.470920 | 4_4:-44600449 | None:intergenic |
AAGTTTAGGCATATTTATAG+AGG | 0.471597 | 4_4:+44598899 | Msa0682660:CDS |
AACCAGAAGAAGCTTGTTGC+TGG | 0.473424 | 4_4:+44598968 | Msa0682660:CDS |
GCTGAGTTTAGTTGGCAACT+TGG | 0.473727 | 4_4:+44600761 | Msa0682660:CDS |
AACTCGGGAGTGCTAGCTCT+TGG | 0.477183 | 4_4:-44599301 | None:intergenic |
TCTTCCTTGGTGGAGTGAAA+GGG | 0.480887 | 4_4:-44600214 | None:intergenic |
TCAGAGCTTGGTTATGATGA+AGG | 0.480927 | 4_4:+44598680 | Msa0682660:CDS |
TTGGATGCATCAAACAAAAC+AGG | 0.481900 | 4_4:+44601523 | Msa0682660:CDS |
TCAATGAAGGAAAGTGAGAA+AGG | 0.482138 | 4_4:+44598422 | Msa0682660:exon |
ATTGTCAGATAAACCAAAGA+AGG | 0.484820 | 4_4:-44600327 | None:intergenic |
GTTGGAATCTTTCTTTGTTG+GGG | 0.486228 | 4_4:+44598363 | Msa0682660:five_prime_UTR |
GGTTATGATGAAGGTGGTGG+TGG | 0.486406 | 4_4:+44598689 | Msa0682660:CDS |
TGAGTGGAAGAGTGAGAGTG+AGG | 0.488015 | 4_4:+44599212 | Msa0682660:CDS |
TCACAAAGGTGAACATGGAT+TGG | 0.488178 | 4_4:+44601504 | Msa0682660:CDS |
GTTTAGTTGGCAACTTGGAT+TGG | 0.492268 | 4_4:+44600766 | Msa0682660:CDS |
AGGGGCTGTTTGGCCCGAGC+TGG | 0.496697 | 4_4:-44600307 | None:intergenic |
GGTTCTAACAATGTAAATTG+TGG | 0.497055 | 4_4:+44599109 | Msa0682660:CDS |
TTATCATGCCTGTTGAGTAT+CGG | 0.500678 | 4_4:+44600536 | Msa0682660:CDS |
TGTTCAGACGGTGGTGGCGA+AGG | 0.501569 | 4_4:+44598856 | Msa0682660:CDS |
AGAAGAGTCTTCAGTTTCAA+AGG | 0.502379 | 4_4:-44599395 | None:intergenic |
ACAACAATAAACTTCAGTTA+GGG | 0.502883 | 4_4:+44600420 | Msa0682660:CDS |
GGAGAATTAGGCCAGCGAAT+AGG | 0.504468 | 4_4:-44599466 | None:intergenic |
TTGATGGTTCATCTTGTGGA+TGG | 0.504684 | 4_4:+44599074 | Msa0682660:CDS |
AGGTTGTTGATCCTATTCGC+TGG | 0.509848 | 4_4:+44599455 | Msa0682660:CDS |
AATCTGATGCAAACAATGGT+GGG | 0.510020 | 4_4:+44598765 | Msa0682660:CDS |
CTATGGCATGCTTGTGCTGG+TGG | 0.512929 | 4_4:+44598461 | Msa0682660:CDS |
GCATGCTTGTGCTGGTGGAA+TGG | 0.513876 | 4_4:+44598466 | Msa0682660:CDS |
AGTAAACAACTTCAAATGGT+TGG | 0.519885 | 4_4:-44599276 | None:intergenic |
TTGTGGAAAGTAGAAAACTT+TGG | 0.520773 | 4_4:-44598510 | None:intergenic |
TGTTAAGGCTTCAGCTGTGA+AGG | 0.522163 | 4_4:+44599327 | Msa0682660:CDS |
CCTTTGAGGAATTCAGAGCT+TGG | 0.522861 | 4_4:+44598668 | Msa0682660:CDS |
GGCTGAGCCGCCTGTTCAGA+CGG | 0.523312 | 4_4:+44598844 | Msa0682660:CDS |
CTGCATGTATACAGGGAGCC+AGG | 0.523472 | 4_4:+44600354 | Msa0682660:CDS |
GAAGAGTCTTCAGTTTCAAA+GGG | 0.524779 | 4_4:-44599394 | None:intergenic |
AAATAATGATGCATATATCA+TGG | 0.525854 | 4_4:+44601781 | Msa0682660:three_prime_UTR |
ATTTGTTGCTCAGTGAGTAT+TGG | 0.526915 | 4_4:-44600641 | None:intergenic |
TAATACAAACATTGATCTAA+GGG | 0.528805 | 4_4:+44598550 | Msa0682660:CDS |
ATATTGTTGTTTACTTAATG+TGG | 0.529066 | 4_4:+44601586 | Msa0682660:three_prime_UTR |
AGAAGATTCTCTTATCAAGA+AGG | 0.533112 | 4_4:+44601728 | Msa0682660:three_prime_UTR |
GATTCTCTTATCAAGAAGGA+TGG | 0.533184 | 4_4:+44601732 | Msa0682660:three_prime_UTR |
CTTTCCAAGGCTTGATTACG+CGG | 0.534891 | 4_4:+44598823 | Msa0682660:CDS |
TGAAGCCTTAACACAGAACT+CGG | 0.535150 | 4_4:-44599317 | None:intergenic |
AAATTGGTGAAGAACCCTTC+AGG | 0.536171 | 4_4:+44600963 | Msa0682660:CDS |
CAATGAAGGAAAGTGAGAAA+GGG | 0.542351 | 4_4:+44598423 | Msa0682660:exon |
AACCAAGAAGTGATAAGTCA+AGG | 0.543232 | 4_4:-44600838 | None:intergenic |
ACCCTGTTGTAAGCAAGTGC+CGG | 0.547262 | 4_4:-44598931 | None:intergenic |
GCATGTTCAGCATGTCCTTG+TGG | 0.548555 | 4_4:-44598527 | None:intergenic |
TATATTCTGTTCATATTCAG+AGG | 0.549640 | 4_4:-44601677 | None:intergenic |
CAGCTGTGAAGGCTGCTATG+AGG | 0.549739 | 4_4:+44599338 | Msa0682660:CDS |
CTGGCTCCCTGTATACATGC+AGG | 0.552767 | 4_4:-44600353 | None:intergenic |
GATACTAATTCGACCAACCA+CGG | 0.553761 | 4_4:-44600167 | None:intergenic |
AATTGTGTGTTGGAATTCGT+AGG | 0.556594 | 4_4:+44599026 | Msa0682660:CDS |
ATCGTCTCAGCACAGTACCT+TGG | 0.557673 | 4_4:-44598800 | None:intergenic |
TCTGATGCAAACAATGGTGG+GGG | 0.561128 | 4_4:+44598767 | Msa0682660:CDS |
GCCGCCTGTTCAGACGGTGG+TGG | 0.561486 | 4_4:+44598850 | Msa0682660:CDS |
ATACTAATTCGACCAACCAC+GGG | 0.564828 | 4_4:-44600166 | None:intergenic |
GCCAGGCATGCTCAATTTGG+AGG | 0.565841 | 4_4:+44600371 | Msa0682660:CDS |
ATTGGATATTGGTCATTGCA+AGG | 0.566046 | 4_4:+44600784 | Msa0682660:CDS |
AAATCCTAGTATGCACATCA+AGG | 0.567436 | 4_4:-44600466 | None:intergenic |
GGAACTCACAAAGGTGAACA+TGG | 0.567844 | 4_4:+44601499 | Msa0682660:CDS |
GAAGCGTGTTAGCCCGTGGT+TGG | 0.567936 | 4_4:+44600154 | Msa0682660:CDS |
TTGTCAGATAAACCAAAGAA+GGG | 0.569032 | 4_4:-44600326 | None:intergenic |
CAATCTGATGCAAACAATGG+TGG | 0.570087 | 4_4:+44598764 | Msa0682660:CDS |
AGTTTAGGCATATTTATAGA+GGG | 0.570327 | 4_4:+44598900 | Msa0682660:CDS |
GCTTGTTGCTGGTGATTCTG+TGG | 0.572232 | 4_4:+44598979 | Msa0682660:CDS |
ACCAAGAAGTGATAAGTCAA+GGG | 0.572563 | 4_4:-44600837 | None:intergenic |
AAAACTTTGGAGTTCACTTG+AGG | 0.572950 | 4_4:-44598497 | None:intergenic |
ATTCTCTTATCAAGAAGGAT+GGG | 0.577129 | 4_4:+44601733 | Msa0682660:three_prime_UTR |
ATCTGATGCAAACAATGGTG+GGG | 0.580572 | 4_4:+44598766 | Msa0682660:CDS |
AAAGTCTTAGCAAAAGATGC+AGG | 0.580849 | 4_4:-44598737 | None:intergenic |
CCAAGCTCTGAATTCCTCAA+AGG | 0.581047 | 4_4:-44598668 | None:intergenic |
GAGAATGGTGAATTGTGTGT+TGG | 0.591957 | 4_4:+44599016 | Msa0682660:CDS |
GTGCTGAGACGATCTTTCCA+AGG | 0.594168 | 4_4:+44598810 | Msa0682660:CDS |
GAGTGGAAGAGTGAGAGTGA+GGG | 0.596583 | 4_4:+44599213 | Msa0682660:CDS |
TTTATAGAGGGACACCGCGC+CGG | 0.597722 | 4_4:+44598912 | Msa0682660:CDS |
TTGCCTGAAAACGTCGGTGA+CGG | 0.603464 | 4_4:-44600284 | None:intergenic |
TGGAGTCAGAAGATGTTGGA+AGG | 0.603517 | 4_4:+44600813 | Msa0682660:CDS |
AGGCTGCTATGAGGATTCAA+TGG | 0.603915 | 4_4:+44599347 | Msa0682660:CDS |
CTCCACCAAGGAAGAAGCTG+CGG | 0.604549 | 4_4:+44600222 | Msa0682660:CDS |
GGTATTTGGATCCACAGCTA+TGG | 0.606132 | 4_4:+44598444 | Msa0682660:CDS |
ATAGTAAAGACAAAGAGAAG+TGG | 0.610021 | 4_4:+44600699 | Msa0682660:CDS |
CAACACAGACAGACACACTC+CGG | 0.610206 | 4_4:-44598005 | None:intergenic |
ACACAAAAGCAATACCTGAA+GGG | 0.611431 | 4_4:-44600977 | None:intergenic |
GCCACCACCGTCTGAACAGG+CGG | 0.614156 | 4_4:-44598851 | None:intergenic |
TTCTTGGAGTCAGAAGATGT+TGG | 0.615581 | 4_4:+44600809 | Msa0682660:CDS |
AAAGGGCTGAAATGAATGAC+TGG | 0.619094 | 4_4:-44600197 | None:intergenic |
CCTACTACTACAGGTTACAT+GGG | 0.623681 | 4_4:+44600106 | Msa0682660:intron |
TGACGGAAACTGAACATCGA+GGG | 0.624449 | 4_4:-44600267 | None:intergenic |
CTTGGTTATGATGAAGGTGG+TGG | 0.625908 | 4_4:+44598686 | Msa0682660:CDS |
TCAGCCGCGTAATCAAGCCT+TGG | 0.630202 | 4_4:-44598827 | None:intergenic |
GCACAAGCATGCCATAGCTG+TGG | 0.631502 | 4_4:-44598455 | None:intergenic |
ATTGTGTGTTGGAATTCGTA+GGG | 0.641411 | 4_4:+44599027 | Msa0682660:CDS |
GACGGAAACTGAACATCGAG+GGG | 0.641637 | 4_4:-44600266 | None:intergenic |
AATGCTCCTGCATGTATACA+GGG | 0.643769 | 4_4:+44600347 | Msa0682660:CDS |
GGCTGACCCTGAAACTGATG+AGG | 0.645568 | 4_4:+44598622 | Msa0682660:CDS |
ACGTGAAGCGTGTTAGCCCG+TGG | 0.646883 | 4_4:+44600150 | Msa0682660:CDS |
AATACCTGAAGAAGGCGCCA+CGG | 0.652216 | 4_4:-44599487 | None:intergenic |
TAACAGCACCTGTTGCATCA+CGG | 0.662294 | 4_4:-44600937 | None:intergenic |
GTTGTAAGCAAGTGCCGGCG+CGG | 0.664793 | 4_4:-44598926 | None:intergenic |
TGAGCCGCCTGTTCAGACGG+TGG | 0.665475 | 4_4:+44598847 | Msa0682660:CDS |
GGCACTTGCTTACAACAGGG+TGG | 0.673448 | 4_4:+44598933 | Msa0682660:CDS |
GAAGCCTTAACACAGAACTC+GGG | 0.673594 | 4_4:-44599316 | None:intergenic |
TGGATAACAGGAACTCACAA+AGG | 0.673838 | 4_4:+44601490 | Msa0682660:CDS |
TGTCAGATAAACCAAAGAAG+GGG | 0.674937 | 4_4:-44600325 | None:intergenic |
AGCTGGTTGCCTGAAAACGT+CGG | 0.679058 | 4_4:-44600290 | None:intergenic |
ACAACCTTACAAAGAATCAG+TGG | 0.680398 | 4_4:-44598584 | None:intergenic |
TTCGCTGGCCTAATTCTCCG+TGG | 0.685289 | 4_4:+44599470 | Msa0682660:CDS |
CTGATGCAAACAATGGTGGG+GGG | 0.689649 | 4_4:+44598768 | Msa0682660:CDS |
GCCGGCACTTGCTTACAACA+GGG | 0.691948 | 4_4:+44598930 | Msa0682660:CDS |
TCAGCCCTTTCACTCCACCA+AGG | 0.700439 | 4_4:+44600210 | Msa0682660:CDS |
GAGCTTGGTTATGATGAAGG+TGG | 0.703479 | 4_4:+44598683 | Msa0682660:CDS |
ACTCAATCTGATGCAAACAA+TGG | 0.706199 | 4_4:+44598761 | Msa0682660:CDS |
GTGACGGAAACTGAACATCG+AGG | 0.721853 | 4_4:-44600268 | None:intergenic |
GTGGTGGCGAAGGATGTGCA+CGG | 0.739739 | 4_4:+44598866 | Msa0682660:CDS |
ACGGAAACTGAACATCGAGG+GGG | 0.755057 | 4_4:-44600265 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATGTAAAAATTGAAGTTTTT+TGG | - | chr4_4:44598267-44598286 | None:intergenic | 15.0% |
!!! | ATATGAAGATTTTGAATAAA+GGG | - | chr4_4:44598292-44598311 | None:intergenic | 15.0% |
!!! | AATATGAAGATTTTGAATAA+AGG | - | chr4_4:44598293-44598312 | None:intergenic | 15.0% |
!!! | ATTGTTTTTTAGTTACAATT+TGG | + | chr4_4:44599507-44599526 | Msa0682660:intron | 15.0% |
!!! | TTTGTTATTGTTCATTTTTA+TGG | + | chr4_4:44599600-44599619 | Msa0682660:intron | 15.0% |
!! | TAATACAAACATTGATCTAA+GGG | + | chr4_4:44598550-44598569 | Msa0682660:CDS | 20.0% |
!! | AATGAAACAATTAGTAGTAT+AGG | - | chr4_4:44599717-44599736 | None:intergenic | 20.0% |
!! | GAAATGTCTTATATAATAAG+AGG | + | chr4_4:44601445-44601464 | Msa0682660:intron | 20.0% |
!!! | ATATTGTTGTTTACTTAATG+TGG | + | chr4_4:44601586-44601605 | Msa0682660:three_prime_UTR | 20.0% |
!! | TTATGATCATGTGAAATTTA+AGG | + | chr4_4:44601634-44601653 | Msa0682660:three_prime_UTR | 20.0% |
!! | TATGAACAGAATATATTTAG+AGG | + | chr4_4:44601685-44601704 | Msa0682660:three_prime_UTR | 20.0% |
!!! | ATAAGAGAATCTTCTTTTTT+TGG | - | chr4_4:44601723-44601742 | None:intergenic | 20.0% |
!! | AAATAATGATGCATATATCA+TGG | + | chr4_4:44601781-44601800 | Msa0682660:three_prime_UTR | 20.0% |
! | AAGAAGAAGAAAACAAATTC+AGG | + | chr4_4:44598122-44598141 | Msa0682660:five_prime_UTR | 25.0% |
! | GAAATTTGAATCATTCACTA+TGG | - | chr4_4:44598181-44598200 | None:intergenic | 25.0% |
! | ATTCTTCTTAGACAAGAATT+TGG | + | chr4_4:44598310-44598329 | Msa0682660:five_prime_UTR | 25.0% |
! | TTCTTCTTAGACAAGAATTT+GGG | + | chr4_4:44598311-44598330 | Msa0682660:five_prime_UTR | 25.0% |
!!! | AAGAAAAAGTGTTTCAATGA+AGG | + | chr4_4:44598409-44598428 | Msa0682660:exon | 25.0% |
! | CTAATACAAACATTGATCTA+AGG | + | chr4_4:44598549-44598568 | Msa0682660:CDS | 25.0% |
! | AAGTTTAGGCATATTTATAG+AGG | + | chr4_4:44598899-44598918 | Msa0682660:CDS | 25.0% |
! | AGTTTAGGCATATTTATAGA+GGG | + | chr4_4:44598900-44598919 | Msa0682660:CDS | 25.0% |
! | AACAATGTAAATTGTGGAAT+TGG | + | chr4_4:44599115-44599134 | Msa0682660:CDS | 25.0% |
! | AAAAAAGAAAATGCTCCAAA+AGG | - | chr4_4:44599142-44599161 | None:intergenic | 25.0% |
! | TAAAAAACAATACCTGAAGA+AGG | - | chr4_4:44599498-44599517 | None:intergenic | 25.0% |
! | TTGAACACATCTTTACATAA+GGG | + | chr4_4:44599540-44599559 | Msa0682660:intron | 25.0% |
!! | ACTCAATTTTTATGCTTCTT+TGG | + | chr4_4:44599563-44599582 | Msa0682660:intron | 25.0% |
!!! | TGAACTTTTTTTCAAACTCT+TGG | + | chr4_4:44599923-44599942 | Msa0682660:intron | 25.0% |
!! | ACTGAAGTTTATTGTTGTTA+AGG | - | chr4_4:44600418-44600437 | None:intergenic | 25.0% |
! | AACAACAATAAACTTCAGTT+AGG | + | chr4_4:44600419-44600438 | Msa0682660:CDS | 25.0% |
! | ACAACAATAAACTTCAGTTA+GGG | + | chr4_4:44600420-44600439 | Msa0682660:CDS | 25.0% |
!!! | AAACATCAGTTTTGTCTTTT+TGG | + | chr4_4:44600614-44600633 | Msa0682660:CDS | 25.0% |
! | TAAGTTTCACAATACATTCT+AGG | + | chr4_4:44601155-44601174 | Msa0682660:intron | 25.0% |
!! | AAAATAGAGTGAAGTCATTT+TGG | - | chr4_4:44601213-44601232 | None:intergenic | 25.0% |
!! | TTTTGCTACTGTACAATAAT+GGG | - | chr4_4:44601252-44601271 | None:intergenic | 25.0% |
!! | ATTTTGCTACTGTACAATAA+TGG | - | chr4_4:44601253-44601272 | None:intergenic | 25.0% |
! | TATATTCTGTTCATATTCAG+AGG | - | chr4_4:44601680-44601699 | None:intergenic | 25.0% |
ATCATTCACTATGGTTAAAC+AGG | - | chr4_4:44598172-44598191 | None:intergenic | 30.0% | |
TTCTTCAGAGAATCTGAAAA+TGG | - | chr4_4:44598203-44598222 | None:intergenic | 30.0% | |
!!! | GAAGTTTTTTGGTTTTCTTG+TGG | - | chr4_4:44598256-44598275 | None:intergenic | 30.0% |
!! | AGAAGAAAGAGTGTTAAAGT+TGG | + | chr4_4:44598345-44598364 | Msa0682660:five_prime_UTR | 30.0% |
AAGTTGGAATCTTTCTTTGT+TGG | + | chr4_4:44598361-44598380 | Msa0682660:five_prime_UTR | 30.0% | |
AGTTGGAATCTTTCTTTGTT+GGG | + | chr4_4:44598362-44598381 | Msa0682660:five_prime_UTR | 30.0% | |
TTGTGGAAAGTAGAAAACTT+TGG | - | chr4_4:44598513-44598532 | None:intergenic | 30.0% | |
! | AAAGTTTTCTACTTTCCACA+AGG | + | chr4_4:44598512-44598531 | Msa0682660:CDS | 30.0% |
! | GGTTCTAACAATGTAAATTG+TGG | + | chr4_4:44599109-44599128 | Msa0682660:CDS | 30.0% |
GAGAATAAGACATTGAGAAA+TGG | + | chr4_4:44599172-44599191 | Msa0682660:CDS | 30.0% | |
!!! | TTGAGAAATGGTTGTTTTGA+TGG | + | chr4_4:44599184-44599203 | Msa0682660:CDS | 30.0% |
!!! | TGTTTTGATGGTAATTTGAG+TGG | + | chr4_4:44599196-44599215 | Msa0682660:CDS | 30.0% |
AGTAAACAACTTCAAATGGT+TGG | - | chr4_4:44599279-44599298 | None:intergenic | 30.0% | |
GGATAGTAAACAACTTCAAA+TGG | - | chr4_4:44599283-44599302 | None:intergenic | 30.0% | |
!! | TTCTAGGATTAGTTGGTTTA+TGG | + | chr4_4:44599414-44599433 | Msa0682660:CDS | 30.0% |
!! | TCTAGGATTAGTTGGTTTAT+GGG | + | chr4_4:44599415-44599434 | Msa0682660:CDS | 30.0% |
GTTGAACACATCTTTACATA+AGG | + | chr4_4:44599539-44599558 | Msa0682660:intron | 30.0% | |
!! | TTCATTTTTATGGTCATCTC+TGG | + | chr4_4:44599610-44599629 | Msa0682660:intron | 30.0% |
GAAACAATTAGTAGTATAGG+AGG | - | chr4_4:44599714-44599733 | None:intergenic | 30.0% | |
! | TTTTCACTCTTGTGATTATG+AGG | + | chr4_4:44599953-44599972 | Msa0682660:intron | 30.0% |
TGAAATAACCTGTGTTAAGT+AGG | + | chr4_4:44599977-44599996 | Msa0682660:intron | 30.0% | |
GAAATAACCTGTGTTAAGTA+GGG | + | chr4_4:44599978-44599997 | Msa0682660:intron | 30.0% | |
! | TTCACGTTTTGTAGTAAATC+AGG | - | chr4_4:44600137-44600156 | None:intergenic | 30.0% |
TTGTCAGATAAACCAAAGAA+GGG | - | chr4_4:44600329-44600348 | None:intergenic | 30.0% | |
ATTGTCAGATAAACCAAAGA+AGG | - | chr4_4:44600330-44600349 | None:intergenic | 30.0% | |
ATAGTAAAGACAAAGAGAAG+TGG | + | chr4_4:44600699-44600718 | Msa0682660:CDS | 30.0% | |
TTGTAGACTAAACTAACAAC+CGG | - | chr4_4:44601119-44601138 | None:intergenic | 30.0% | |
TAGCAAAATAGTACTACTCT+TGG | + | chr4_4:44601264-44601283 | Msa0682660:intron | 30.0% | |
TAGTACTACTCTTGGATTAA+TGG | + | chr4_4:44601272-44601291 | Msa0682660:intron | 30.0% | |
AGTACTACTCTTGGATTAAT+GGG | + | chr4_4:44601273-44601292 | Msa0682660:intron | 30.0% | |
!! | AGGATCTTGATTGTTTTTCA+GGG | + | chr4_4:44601465-44601484 | Msa0682660:intron | 30.0% |
CATTATGCAAATATGCTTAG+AGG | - | chr4_4:44601550-44601569 | None:intergenic | 30.0% | |
AGAAGATTCTCTTATCAAGA+AGG | + | chr4_4:44601728-44601747 | Msa0682660:three_prime_UTR | 30.0% | |
ATTCTCTTATCAAGAAGGAT+GGG | + | chr4_4:44601733-44601752 | Msa0682660:three_prime_UTR | 30.0% | |
! | GTGAGTAAAGTTTTTGCTGA+TGG | + | chr4_4:44598144-44598163 | Msa0682660:five_prime_UTR | 35.0% |
GTTGGAATCTTTCTTTGTTG+GGG | + | chr4_4:44598363-44598382 | Msa0682660:five_prime_UTR | 35.0% | |
TCAATGAAGGAAAGTGAGAA+AGG | + | chr4_4:44598422-44598441 | Msa0682660:exon | 35.0% | |
CAATGAAGGAAAGTGAGAAA+GGG | + | chr4_4:44598423-44598442 | Msa0682660:exon | 35.0% | |
!! | AAAACTTTGGAGTTCACTTG+AGG | - | chr4_4:44598500-44598519 | None:intergenic | 35.0% |
!! | TTCACCACTGATTCTTTGTA+AGG | + | chr4_4:44598580-44598599 | Msa0682660:CDS | 35.0% |
ACAACCTTACAAAGAATCAG+TGG | - | chr4_4:44598587-44598606 | None:intergenic | 35.0% | |
CTGATTCTTTGTAAGGTTGT+TGG | + | chr4_4:44598587-44598606 | Msa0682660:CDS | 35.0% | |
!! | GGTTGTTGGTGTTAAATTCA+TGG | + | chr4_4:44598601-44598620 | Msa0682660:CDS | 35.0% |
CAAAAACCTCATCAGTTTCA+GGG | - | chr4_4:44598631-44598650 | None:intergenic | 35.0% | |
TAATGAAGCTTCTTCCTTTG+AGG | + | chr4_4:44598654-44598673 | Msa0682660:CDS | 35.0% | |
AAAGTCTTAGCAAAAGATGC+AGG | - | chr4_4:44598740-44598759 | None:intergenic | 35.0% | |
ACTCAATCTGATGCAAACAA+TGG | + | chr4_4:44598761-44598780 | Msa0682660:CDS | 35.0% | |
AATCTGATGCAAACAATGGT+GGG | + | chr4_4:44598765-44598784 | Msa0682660:CDS | 35.0% | |
!! | TGATTCTGTGGTGTTTTTGA+GGG | + | chr4_4:44598991-44599010 | Msa0682660:CDS | 35.0% |
AATTGTGTGTTGGAATTCGT+AGG | + | chr4_4:44599026-44599045 | Msa0682660:CDS | 35.0% | |
ATTGTGTGTTGGAATTCGTA+GGG | + | chr4_4:44599027-44599046 | Msa0682660:CDS | 35.0% | |
! | AATTGTGGAATTGGACCTTT+TGG | + | chr4_4:44599124-44599143 | Msa0682660:CDS | 35.0% |
TGTTATGGAAGCTGTGAAAT+TGG | + | chr4_4:44599243-44599262 | Msa0682660:CDS | 35.0% | |
GAAGAGTCTTCAGTTTCAAA+GGG | - | chr4_4:44599397-44599416 | None:intergenic | 35.0% | |
AGAAGAGTCTTCAGTTTCAA+AGG | - | chr4_4:44599398-44599417 | None:intergenic | 35.0% | |
TTGAAACTGAAGACTCTTCT+AGG | + | chr4_4:44599398-44599417 | Msa0682660:CDS | 35.0% | |
!! | AAGACTCTTCTAGGATTAGT+TGG | + | chr4_4:44599407-44599426 | Msa0682660:CDS | 35.0% |
GTGATATTGTGGATAATCAC+AGG | + | chr4_4:44599825-44599844 | Msa0682660:intron | 35.0% | |
CAATCTGGGCAATAATATCA+AGG | - | chr4_4:44599898-44599917 | None:intergenic | 35.0% | |
TGATATTATTGCCCAGATTG+CGG | + | chr4_4:44599898-44599917 | Msa0682660:intron | 35.0% | |
ATTGTTATGCCTACTACTAC+AGG | + | chr4_4:44600097-44600116 | Msa0682660:intron | 35.0% | |
TGTCAGATAAACCAAAGAAG+GGG | - | chr4_4:44600328-44600347 | None:intergenic | 35.0% | |
AAATCCTAGTATGCACATCA+AGG | - | chr4_4:44600469-44600488 | None:intergenic | 35.0% | |
TTATCATGCCTGTTGAGTAT+CGG | + | chr4_4:44600536-44600555 | Msa0682660:CDS | 35.0% | |
! | ATTTGTTGCTCAGTGAGTAT+TGG | - | chr4_4:44600644-44600663 | None:intergenic | 35.0% |
ATTGGATATTGGTCATTGCA+AGG | + | chr4_4:44600784-44600803 | Msa0682660:CDS | 35.0% | |
ACCAAGAAGTGATAAGTCAA+GGG | - | chr4_4:44600840-44600859 | None:intergenic | 35.0% | |
AACCAAGAAGTGATAAGTCA+AGG | - | chr4_4:44600841-44600860 | None:intergenic | 35.0% | |
ACACAAAAGCAATACCTGAA+GGG | - | chr4_4:44600980-44600999 | None:intergenic | 35.0% | |
AACACAAAAGCAATACCTGA+AGG | - | chr4_4:44600981-44601000 | None:intergenic | 35.0% | |
!! | TTTTAAGTAAACAAGCGCCT+TGG | + | chr4_4:44600999-44601018 | Msa0682660:intron | 35.0% |
GTACTACTCTTGGATTAATG+GGG | + | chr4_4:44601274-44601293 | Msa0682660:intron | 35.0% | |
TACTACTCTTGGATTAATGG+GGG | + | chr4_4:44601275-44601294 | Msa0682660:intron | 35.0% | |
TTGACAATTCTGACAGATTC+AGG | + | chr4_4:44601343-44601362 | Msa0682660:CDS | 35.0% | |
!! | GAGGATCTTGATTGTTTTTC+AGG | + | chr4_4:44601464-44601483 | Msa0682660:intron | 35.0% |
TTGGATGCATCAAACAAAAC+AGG | + | chr4_4:44601523-44601542 | Msa0682660:CDS | 35.0% | |
GATTCTCTTATCAAGAAGGA+TGG | + | chr4_4:44601732-44601751 | Msa0682660:three_prime_UTR | 35.0% | |
! | TCTTTCTTTGTTGGGGTGTT+AGG | + | chr4_4:44598370-44598389 | Msa0682660:five_prime_UTR | 40.0% |
!! | GGAAAGTGAGAAAGGGTATT+TGG | + | chr4_4:44598430-44598449 | Msa0682660:CDS | 40.0% |
GCAAAAACCTCATCAGTTTC+AGG | - | chr4_4:44598632-44598651 | None:intergenic | 40.0% | |
TCAGAGCTTGGTTATGATGA+AGG | + | chr4_4:44598680-44598699 | Msa0682660:CDS | 40.0% | |
CAATCTGATGCAAACAATGG+TGG | + | chr4_4:44598764-44598783 | Msa0682660:CDS | 40.0% | |
ATCTGATGCAAACAATGGTG+GGG | + | chr4_4:44598766-44598785 | Msa0682660:CDS | 40.0% | |
!! | GTGATTCTGTGGTGTTTTTG+AGG | + | chr4_4:44598990-44599009 | Msa0682660:CDS | 40.0% |
GAGAATGGTGAATTGTGTGT+TGG | + | chr4_4:44599016-44599035 | Msa0682660:CDS | 40.0% | |
!! | GGTTTTGATGGTTCATCTTG+TGG | + | chr4_4:44599070-44599089 | Msa0682660:CDS | 40.0% |
! | TTGATGGTTCATCTTGTGGA+TGG | + | chr4_4:44599074-44599093 | Msa0682660:CDS | 40.0% |
TGAAGCCTTAACACAGAACT+CGG | - | chr4_4:44599320-44599339 | None:intergenic | 40.0% | |
ATGAGGATTCAATGGTGTTC+TGG | + | chr4_4:44599355-44599374 | Msa0682660:CDS | 40.0% | |
TGAGGATTCAATGGTGTTCT+GGG | + | chr4_4:44599356-44599375 | Msa0682660:CDS | 40.0% | |
CTCTGGTGTTTGTGGTTATA+TGG | + | chr4_4:44599627-44599646 | Msa0682660:intron | 40.0% | |
CATTGCTAGTCGTGATATTG+TGG | + | chr4_4:44599814-44599833 | Msa0682660:intron | 40.0% | |
!! | TATCTTTGAGATCGCAACTG+AGG | - | chr4_4:44599868-44599887 | None:intergenic | 40.0% |
GATATTATTGCCCAGATTGC+GGG | + | chr4_4:44599899-44599918 | Msa0682660:intron | 40.0% | |
ATATTATTGCCCAGATTGCG+GGG | + | chr4_4:44599900-44599919 | Msa0682660:intron | 40.0% | |
AACATCTCCCTACTTAACAC+AGG | - | chr4_4:44599988-44600007 | None:intergenic | 40.0% | |
CCTACTACTACAGGTTACAT+GGG | + | chr4_4:44600106-44600125 | Msa0682660:intron | 40.0% | |
ATACTAATTCGACCAACCAC+GGG | - | chr4_4:44600169-44600188 | None:intergenic | 40.0% | |
GATACTAATTCGACCAACCA+CGG | - | chr4_4:44600170-44600189 | None:intergenic | 40.0% | |
AAAGGGCTGAAATGAATGAC+TGG | - | chr4_4:44600200-44600219 | None:intergenic | 40.0% | |
AATGCTCCTGCATGTATACA+GGG | + | chr4_4:44600347-44600366 | Msa0682660:CDS | 40.0% | |
!! | TCAAGGTGCTGAATGTTAGT+AGG | - | chr4_4:44600452-44600471 | None:intergenic | 40.0% |
CAGGCATGATAAGCTTTCTT+TGG | - | chr4_4:44600528-44600547 | None:intergenic | 40.0% | |
TATCATGCCTGTTGAGTATC+GGG | + | chr4_4:44600537-44600556 | Msa0682660:CDS | 40.0% | |
! | ATCTTTTCCCGATACTCAAC+AGG | - | chr4_4:44600547-44600566 | None:intergenic | 40.0% |
AGACAAAGAGAAGTGGTTCT+TGG | + | chr4_4:44600706-44600725 | Msa0682660:CDS | 40.0% | |
! | TTCTTGGATGCATTTTCAGC+TGG | + | chr4_4:44600722-44600741 | Msa0682660:CDS | 40.0% |
! | TCTTGGATGCATTTTCAGCT+GGG | + | chr4_4:44600723-44600742 | Msa0682660:CDS | 40.0% |
CTAATGCTGCTGAGTTTAGT+TGG | + | chr4_4:44600753-44600772 | Msa0682660:CDS | 40.0% | |
GTTTAGTTGGCAACTTGGAT+TGG | + | chr4_4:44600766-44600785 | Msa0682660:CDS | 40.0% | |
! | TGGCAACTTGGATTGGATAT+TGG | + | chr4_4:44600773-44600792 | Msa0682660:CDS | 40.0% |
! | TGGTCATTGCAAGGTTTTCT+TGG | + | chr4_4:44600793-44600812 | Msa0682660:CDS | 40.0% |
TTCTTGGAGTCAGAAGATGT+TGG | + | chr4_4:44600809-44600828 | Msa0682660:CDS | 40.0% | |
ACCCTTGACTTATCACTTCT+TGG | + | chr4_4:44600836-44600855 | Msa0682660:CDS | 40.0% | |
!!! | GTTTTTTACCGTGATGCAAC+AGG | + | chr4_4:44600929-44600948 | Msa0682660:CDS | 40.0% |
!! | ACAGGTGCTGTTAAGCAAAT+TGG | + | chr4_4:44600947-44600966 | Msa0682660:CDS | 40.0% |
AAATTGGTGAAGAACCCTTC+AGG | + | chr4_4:44600963-44600982 | Msa0682660:CDS | 40.0% | |
TCTGACATATTCAAGGACCA+AGG | - | chr4_4:44601019-44601038 | None:intergenic | 40.0% | |
TGGTCCTTGAATATGTCAGA+CGG | + | chr4_4:44601019-44601038 | Msa0682660:intron | 40.0% | |
!! | GTGTCTTTTGCTAGTCTGTT+TGG | + | chr4_4:44601092-44601111 | Msa0682660:intron | 40.0% |
!! | TTTTGCTAGTCTGTTTGGTC+CGG | + | chr4_4:44601097-44601116 | Msa0682660:intron | 40.0% |
TGGTCTTTAAACGTGTGTGT+CGG | - | chr4_4:44601193-44601212 | None:intergenic | 40.0% | |
ACTACTCTTGGATTAATGGG+GGG | + | chr4_4:44601276-44601295 | Msa0682660:intron | 40.0% | |
!!! | CTTGATTGTTTTTCAGGGCA+TGG | + | chr4_4:44601470-44601489 | Msa0682660:intron | 40.0% |
!!! | TTTTTCAGGGCATGGATAAC+AGG | + | chr4_4:44601478-44601497 | Msa0682660:intron | 40.0% |
TGGATAACAGGAACTCACAA+AGG | + | chr4_4:44601490-44601509 | Msa0682660:CDS | 40.0% | |
TCACAAAGGTGAACATGGAT+TGG | + | chr4_4:44601504-44601523 | Msa0682660:CDS | 40.0% | |
! | GTGTCTGTCTGTGTTGTTGT+TGG | + | chr4_4:44598012-44598031 | Msa0682660:five_prime_UTR | 45.0% |
GGTATTTGGATCCACAGCTA+TGG | + | chr4_4:44598444-44598463 | Msa0682660:CDS | 45.0% | |
!! | CCAAGCTCTGAATTCCTCAA+AGG | - | chr4_4:44598671-44598690 | None:intergenic | 45.0% |
! | CCTTTGAGGAATTCAGAGCT+TGG | + | chr4_4:44598668-44598687 | Msa0682660:CDS | 45.0% |
GAGCTTGGTTATGATGAAGG+TGG | + | chr4_4:44598683-44598702 | Msa0682660:CDS | 45.0% | |
CTTGGTTATGATGAAGGTGG+TGG | + | chr4_4:44598686-44598705 | Msa0682660:CDS | 45.0% | |
TCTGATGCAAACAATGGTGG+GGG | + | chr4_4:44598767-44598786 | Msa0682660:CDS | 45.0% | |
CTTTCCAAGGCTTGATTACG+CGG | + | chr4_4:44598823-44598842 | Msa0682660:CDS | 45.0% | |
!! | ACGGTGAGCTTTGGAAGTTT+AGG | + | chr4_4:44598885-44598904 | Msa0682660:CDS | 45.0% |
!! | AACCAGAAGAAGCTTGTTGC+TGG | + | chr4_4:44598968-44598987 | Msa0682660:CDS | 45.0% |
!! | GTGTTTTTGAGGGCTGAGAA+TGG | + | chr4_4:44599001-44599020 | Msa0682660:CDS | 45.0% |
TGGAATTCGTAGGGCGAAAA+AGG | + | chr4_4:44599036-44599055 | Msa0682660:CDS | 45.0% | |
GGAATTCGTAGGGCGAAAAA+GGG | + | chr4_4:44599037-44599056 | Msa0682660:CDS | 45.0% | |
! | TCATCTTGTGGATGGACTTC+AGG | + | chr4_4:44599082-44599101 | Msa0682660:CDS | 45.0% |
AGTGAGGGCTGAAGATGTTA+TGG | + | chr4_4:44599228-44599247 | Msa0682660:CDS | 45.0% | |
GAAGCCTTAACACAGAACTC+GGG | - | chr4_4:44599319-44599338 | None:intergenic | 45.0% | |
TGTTAAGGCTTCAGCTGTGA+AGG | + | chr4_4:44599327-44599346 | Msa0682660:CDS | 45.0% | |
AGGCTGCTATGAGGATTCAA+TGG | + | chr4_4:44599347-44599366 | Msa0682660:CDS | 45.0% | |
!! | TTCAATGGTGTTCTGGGATG+AGG | + | chr4_4:44599362-44599381 | Msa0682660:CDS | 45.0% |
GGGAACAATTGCTTCTGTTC+AGG | + | chr4_4:44599435-44599454 | Msa0682660:CDS | 45.0% | |
AGGTTGTTGATCCTATTCGC+TGG | + | chr4_4:44599455-44599474 | Msa0682660:CDS | 45.0% | |
ATGGTCATCTCTGGTGTTTG+TGG | + | chr4_4:44599619-44599638 | Msa0682660:intron | 45.0% | |
AGCTCAATTGTCATACTGCG+AGG | + | chr4_4:44599775-44599794 | Msa0682660:intron | 45.0% | |
AAAAGTTCACCCCGCAATCT+GGG | - | chr4_4:44599912-44599931 | None:intergenic | 45.0% | |
AAAAAGTTCACCCCGCAATC+TGG | - | chr4_4:44599913-44599932 | None:intergenic | 45.0% | |
GCCTACTACTACAGGTTACA+TGG | + | chr4_4:44600105-44600124 | Msa0682660:intron | 45.0% | |
CCCATGTAACCTGTAGTAGT+AGG | - | chr4_4:44600109-44600128 | None:intergenic | 45.0% | |
TCTTCCTTGGTGGAGTGAAA+GGG | - | chr4_4:44600217-44600236 | None:intergenic | 45.0% | |
TTCTTCCTTGGTGGAGTGAA+AGG | - | chr4_4:44600218-44600237 | None:intergenic | 45.0% | |
TGACGGAAACTGAACATCGA+GGG | - | chr4_4:44600270-44600289 | None:intergenic | 45.0% | |
AAACCAAAGAAGGGGCTGTT+TGG | - | chr4_4:44600320-44600339 | None:intergenic | 45.0% | |
CAATGCTCCTGCATGTATAC+AGG | + | chr4_4:44600346-44600365 | Msa0682660:CDS | 45.0% | |
AGCACCTTGATGTGCATACT+AGG | + | chr4_4:44600462-44600481 | Msa0682660:CDS | 45.0% | |
! | GATGCATTTTCAGCTGGGAA+AGG | + | chr4_4:44600728-44600747 | Msa0682660:CDS | 45.0% |
GCTGAGTTTAGTTGGCAACT+TGG | + | chr4_4:44600761-44600780 | Msa0682660:CDS | 45.0% | |
TGGAGTCAGAAGATGTTGGA+AGG | + | chr4_4:44600813-44600832 | Msa0682660:CDS | 45.0% | |
TAACAGCACCTGTTGCATCA+CGG | - | chr4_4:44600940-44600959 | None:intergenic | 45.0% | |
TCCTTGAATATGTCAGACGG+TGG | + | chr4_4:44601022-44601041 | Msa0682660:intron | 45.0% | |
ACCACCGTCTGACATATTCA+AGG | - | chr4_4:44601026-44601045 | None:intergenic | 45.0% | |
TCAGGCAGCAAAAATGTGAG+AGG | + | chr4_4:44601361-44601380 | Msa0682660:CDS | 45.0% | |
CAGGCAGCAAAAATGTGAGA+GGG | + | chr4_4:44601362-44601381 | Msa0682660:CDS | 45.0% | |
GGAACTCACAAAGGTGAACA+TGG | + | chr4_4:44601499-44601518 | Msa0682660:CDS | 45.0% | |
GCATGTTCAGCATGTCCTTG+TGG | - | chr4_4:44598530-44598549 | None:intergenic | 50.0% | |
! | GGTTATGATGAAGGTGGTGG+TGG | + | chr4_4:44598689-44598708 | Msa0682660:CDS | 50.0% |
! | CTGATGCAAACAATGGTGGG+GGG | + | chr4_4:44598768-44598787 | Msa0682660:CDS | 50.0% |
ATCGTCTCAGCACAGTACCT+TGG | - | chr4_4:44598803-44598822 | None:intergenic | 50.0% | |
GTGCTGAGACGATCTTTCCA+AGG | + | chr4_4:44598810-44598829 | Msa0682660:CDS | 50.0% | |
ACCCTGTTGTAAGCAAGTGC+CGG | - | chr4_4:44598934-44598953 | None:intergenic | 50.0% | |
CACCAGCAACAAGCTTCTTC+TGG | - | chr4_4:44598973-44598992 | None:intergenic | 50.0% | |
! | GCTTGTTGCTGGTGATTCTG+TGG | + | chr4_4:44598979-44598998 | Msa0682660:CDS | 50.0% |
CGTAGGGCGAAAAAGGGAAT+CGG | + | chr4_4:44599043-44599062 | Msa0682660:CDS | 50.0% | |
!!! | GGAATCGGTGGTGGTTTTGA+TGG | + | chr4_4:44599058-44599077 | Msa0682660:CDS | 50.0% |
! | TGTGGATGGACTTCAGGTTC+TGG | + | chr4_4:44599088-44599107 | Msa0682660:CDS | 50.0% |
TGAGTGGAAGAGTGAGAGTG+AGG | + | chr4_4:44599212-44599231 | Msa0682660:CDS | 50.0% | |
GAGTGGAAGAGTGAGAGTGA+GGG | + | chr4_4:44599213-44599232 | Msa0682660:CDS | 50.0% | |
CACTCCCGAGTTCTGTGTTA+AGG | + | chr4_4:44599312-44599331 | Msa0682660:CDS | 50.0% | |
GGAGAATTAGGCCAGCGAAT+AGG | - | chr4_4:44599469-44599488 | None:intergenic | 50.0% | |
!! | AATACCTGAAGAAGGCGCCA+CGG | - | chr4_4:44599490-44599509 | None:intergenic | 50.0% |
ACGGAAACTGAACATCGAGG+GGG | - | chr4_4:44600268-44600287 | None:intergenic | 50.0% | |
GACGGAAACTGAACATCGAG+GGG | - | chr4_4:44600269-44600288 | None:intergenic | 50.0% | |
! | GTGACGGAAACTGAACATCG+AGG | - | chr4_4:44600271-44600290 | None:intergenic | 50.0% |
! | TTTCCGTCACCGACGTTTTC+AGG | + | chr4_4:44600281-44600300 | Msa0682660:CDS | 50.0% |
TTGCCTGAAAACGTCGGTGA+CGG | - | chr4_4:44600287-44600306 | None:intergenic | 50.0% | |
AGCTGGTTGCCTGAAAACGT+CGG | - | chr4_4:44600293-44600312 | None:intergenic | 50.0% | |
!! | ACGTTTTCAGGCAACCAGCT+CGG | + | chr4_4:44600293-44600312 | Msa0682660:CDS | 50.0% |
TCCTCCAAATTGAGCATGCC+TGG | - | chr4_4:44600375-44600394 | None:intergenic | 50.0% | |
GCACAAGCATGCCATAGCTG+TGG | - | chr4_4:44598458-44598477 | None:intergenic | 55.0% | |
CAGCTATGGCATGCTTGTGC+TGG | + | chr4_4:44598458-44598477 | Msa0682660:CDS | 55.0% | |
CTATGGCATGCTTGTGCTGG+TGG | + | chr4_4:44598461-44598480 | Msa0682660:CDS | 55.0% | |
! | GCATGCTTGTGCTGGTGGAA+TGG | + | chr4_4:44598466-44598485 | Msa0682660:CDS | 55.0% |
GGCTGACCCTGAAACTGATG+AGG | + | chr4_4:44598622-44598641 | Msa0682660:CDS | 55.0% | |
!! | GATGAAGGTGGTGGTGGTGA+TGG | + | chr4_4:44598695-44598714 | Msa0682660:CDS | 55.0% |
!! | AGGTGGTGGTGGTGATGGTT+TGG | + | chr4_4:44598700-44598719 | Msa0682660:CDS | 55.0% |
! | GTGGGGGGTTTTCTGTTCCA+AGG | + | chr4_4:44598783-44598802 | Msa0682660:CDS | 55.0% |
TCAGCCGCGTAATCAAGCCT+TGG | - | chr4_4:44598830-44598849 | None:intergenic | 55.0% | |
AGGATGTGCACGGTGAGCTT+TGG | + | chr4_4:44598876-44598895 | Msa0682660:CDS | 55.0% | |
TTTATAGAGGGACACCGCGC+CGG | + | chr4_4:44598912-44598931 | Msa0682660:CDS | 55.0% | |
GCCGGCACTTGCTTACAACA+GGG | + | chr4_4:44598930-44598949 | Msa0682660:CDS | 55.0% | |
GGCACTTGCTTACAACAGGG+TGG | + | chr4_4:44598933-44598952 | Msa0682660:CDS | 55.0% | |
AGGGCGAAAAAGGGAATCGG+TGG | + | chr4_4:44599046-44599065 | Msa0682660:CDS | 55.0% | |
GCGAAAAAGGGAATCGGTGG+TGG | + | chr4_4:44599049-44599068 | Msa0682660:CDS | 55.0% | |
!! | AACTCGGGAGTGCTAGCTCT+TGG | - | chr4_4:44599304-44599323 | None:intergenic | 55.0% |
CAGCTGTGAAGGCTGCTATG+AGG | + | chr4_4:44599338-44599357 | Msa0682660:CDS | 55.0% | |
! | TTCGCTGGCCTAATTCTCCG+TGG | + | chr4_4:44599470-44599489 | Msa0682660:CDS | 55.0% |
!! | AGAAGGCGCCACGGAGAATT+AGG | - | chr4_4:44599481-44599500 | None:intergenic | 55.0% |
TCAGCCCTTTCACTCCACCA+AGG | + | chr4_4:44600210-44600229 | Msa0682660:CDS | 55.0% | |
CTCCACCAAGGAAGAAGCTG+CGG | + | chr4_4:44600222-44600241 | Msa0682660:CDS | 55.0% | |
AACCGCAGCTTCTTCCTTGG+TGG | - | chr4_4:44600227-44600246 | None:intergenic | 55.0% | |
GGAAACCGCAGCTTCTTCCT+TGG | - | chr4_4:44600230-44600249 | None:intergenic | 55.0% | |
!! | CGTTTTCAGGCAACCAGCTC+GGG | + | chr4_4:44600294-44600313 | Msa0682660:CDS | 55.0% |
CTGGCTCCCTGTATACATGC+AGG | - | chr4_4:44600356-44600375 | None:intergenic | 55.0% | |
CTGCATGTATACAGGGAGCC+AGG | + | chr4_4:44600354-44600373 | Msa0682660:CDS | 55.0% | |
GGAGCCAGGCATGCTCAATT+TGG | + | chr4_4:44600368-44600387 | Msa0682660:CDS | 55.0% | |
GCCAGGCATGCTCAATTTGG+AGG | + | chr4_4:44600371-44600390 | Msa0682660:CDS | 55.0% | |
TTCGCCACCACCGTCTGAAC+AGG | - | chr4_4:44598857-44598876 | None:intergenic | 60.0% | |
! | TGTTCAGACGGTGGTGGCGA+AGG | + | chr4_4:44598856-44598875 | Msa0682660:CDS | 60.0% |
! | GTGGTGGCGAAGGATGTGCA+CGG | + | chr4_4:44598866-44598885 | Msa0682660:CDS | 60.0% |
!! | GTTGTAAGCAAGTGCCGGCG+CGG | - | chr4_4:44598929-44598948 | None:intergenic | 60.0% |
CGCCGGCACTTGCTTACAAC+AGG | + | chr4_4:44598929-44598948 | Msa0682660:CDS | 60.0% | |
TTCTCCGTGGCGCCTTCTTC+AGG | + | chr4_4:44599483-44599502 | Msa0682660:CDS | 60.0% | |
ACGTGAAGCGTGTTAGCCCG+TGG | + | chr4_4:44600150-44600169 | Msa0682660:CDS | 60.0% | |
GAAGCGTGTTAGCCCGTGGT+TGG | + | chr4_4:44600154-44600173 | Msa0682660:CDS | 60.0% | |
AGGGGGAAGTCGAGGTTTGG+TGG | - | chr4_4:44600251-44600270 | None:intergenic | 60.0% | |
TCGAGGGGGAAGTCGAGGTT+TGG | - | chr4_4:44600254-44600273 | None:intergenic | 60.0% | |
GAACATCGAGGGGGAAGTCG+AGG | - | chr4_4:44600259-44600278 | None:intergenic | 60.0% | |
GGGCCAAACAGCCCCTTCTT+TGG | + | chr4_4:44600314-44600333 | Msa0682660:CDS | 60.0% | |
GGCTGAGCCGCCTGTTCAGA+CGG | + | chr4_4:44598844-44598863 | Msa0682660:CDS | 65.0% | |
TGAGCCGCCTGTTCAGACGG+TGG | + | chr4_4:44598847-44598866 | Msa0682660:CDS | 65.0% | |
GCCACCACCGTCTGAACAGG+CGG | - | chr4_4:44598854-44598873 | None:intergenic | 65.0% | |
GCCGCCTGTTCAGACGGTGG+TGG | + | chr4_4:44598850-44598869 | Msa0682660:CDS | 70.0% | |
AGGGGCTGTTTGGCCCGAGC+TGG | - | chr4_4:44600310-44600329 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_4 | gene | 44598006 | 44601838 | 44598006 | ID=Msa0682660;Name=Msa0682660 |
chr4_4 | mRNA | 44598006 | 44601838 | 44598006 | ID=Msa0682660-mRNA-1;Parent=Msa0682660;Name=Msa0682660-mRNA-1;_AED=0.02;_eAED=0.02;_QI=419|1|1|1|1|1|4|271|697 |
chr4_4 | exon | 44598006 | 44599504 | 44598006 | ID=Msa0682660-mRNA-1:exon:10754;Parent=Msa0682660-mRNA-1 |
chr4_4 | exon | 44600119 | 44600984 | 44600119 | ID=Msa0682660-mRNA-1:exon:10755;Parent=Msa0682660-mRNA-1 |
chr4_4 | exon | 44601318 | 44601383 | 44601318 | ID=Msa0682660-mRNA-1:exon:10756;Parent=Msa0682660-mRNA-1 |
chr4_4 | exon | 44601486 | 44601838 | 44601486 | ID=Msa0682660-mRNA-1:exon:10757;Parent=Msa0682660-mRNA-1 |
chr4_4 | five_prime_UTR | 44598006 | 44598424 | 44598006 | ID=Msa0682660-mRNA-1:five_prime_utr;Parent=Msa0682660-mRNA-1 |
chr4_4 | CDS | 44598425 | 44599504 | 44598425 | ID=Msa0682660-mRNA-1:cds;Parent=Msa0682660-mRNA-1 |
chr4_4 | CDS | 44600119 | 44600984 | 44600119 | ID=Msa0682660-mRNA-1:cds;Parent=Msa0682660-mRNA-1 |
chr4_4 | CDS | 44601318 | 44601383 | 44601318 | ID=Msa0682660-mRNA-1:cds;Parent=Msa0682660-mRNA-1 |
chr4_4 | CDS | 44601486 | 44601567 | 44601486 | ID=Msa0682660-mRNA-1:cds;Parent=Msa0682660-mRNA-1 |
chr4_4 | three_prime_UTR | 44601568 | 44601838 | 44601568 | ID=Msa0682660-mRNA-1:three_prime_utr;Parent=Msa0682660-mRNA-1 |
Gene Sequence |
Protein sequence |