Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0682820 | XP_024637349.1 | 86.093 | 453 | 21 | 5 | 1 | 452 | 1 | 412 | 0.0 | 732 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0682820 | A0A396I7N5 | 86.093 | 453 | 21 | 5 | 1 | 452 | 1 | 412 | 0.0 | 732 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0643120 | Msa0682820 | 0.807923 | 3.987690e-50 | -8.615850e-47 |
| Msa0547290 | Msa0682820 | 0.828432 | 9.021408e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0682820 | MtrunA17_Chr4g0029221 | 86.093 | 453 | 21 | 5 | 1 | 452 | 1 | 412 | 0.0 | 732 |
| Msa0682820 | MtrunA17_Chr2g0326551 | 53.996 | 463 | 124 | 15 | 1 | 452 | 1 | 385 | 7.58e-136 | 404 |
| Msa0682820 | MtrunA17_Chr1g0181371 | 45.227 | 440 | 169 | 14 | 42 | 468 | 34 | 414 | 2.48e-103 | 320 |
| Msa0682820 | MtrunA17_Chr3g0120281 | 42.172 | 396 | 168 | 10 | 88 | 464 | 37 | 390 | 3.33e-78 | 254 |
| Msa0682820 | MtrunA17_Chr2g0286611 | 33.148 | 359 | 158 | 11 | 116 | 458 | 58 | 350 | 1.41e-39 | 149 |
| Msa0682820 | MtrunA17_Chr7g0246271 | 34.595 | 185 | 72 | 3 | 277 | 460 | 45 | 181 | 1.32e-21 | 93.2 |
| Msa0682820 | MtrunA17_Chr7g0246251 | 36.154 | 130 | 35 | 2 | 295 | 423 | 1 | 83 | 8.29e-16 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0682820 | AT5G60580.1 | 53.304 | 454 | 145 | 13 | 1 | 452 | 1 | 389 | 2.46e-127 | 382 |
| Msa0682820 | AT5G60580.3 | 53.304 | 454 | 145 | 13 | 1 | 452 | 1 | 389 | 2.46e-127 | 382 |
| Msa0682820 | AT5G60580.4 | 53.304 | 454 | 145 | 13 | 1 | 452 | 1 | 389 | 2.48e-127 | 382 |
| Msa0682820 | AT5G60580.2 | 53.304 | 454 | 145 | 13 | 1 | 452 | 1 | 389 | 2.48e-127 | 382 |
| Msa0682820 | AT3G09760.1 | 41.991 | 462 | 184 | 15 | 4 | 452 | 9 | 399 | 7.10e-89 | 283 |
| Msa0682820 | AT5G03180.3 | 40.941 | 425 | 182 | 14 | 38 | 456 | 29 | 390 | 2.30e-80 | 258 |
| Msa0682820 | AT5G03180.2 | 40.855 | 421 | 180 | 14 | 38 | 452 | 29 | 386 | 4.49e-78 | 254 |
| Msa0682820 | AT5G03180.5 | 40.941 | 425 | 178 | 15 | 38 | 456 | 29 | 386 | 2.70e-77 | 250 |
| Msa0682820 | AT5G03180.4 | 40.786 | 407 | 172 | 14 | 52 | 452 | 8 | 351 | 1.40e-76 | 249 |
| Msa0682820 | AT5G03180.1 | 40.855 | 421 | 176 | 15 | 38 | 452 | 29 | 382 | 6.00e-75 | 246 |
| Msa0682820 | AT3G06330.3 | 35.119 | 336 | 158 | 10 | 119 | 453 | 80 | 356 | 7.01e-39 | 146 |
| Msa0682820 | AT3G06330.4 | 36.735 | 294 | 131 | 9 | 166 | 458 | 11 | 250 | 2.21e-38 | 144 |
| Msa0682820 | AT3G06330.1 | 34.604 | 341 | 163 | 10 | 119 | 458 | 80 | 361 | 5.24e-38 | 145 |
| Msa0682820 | AT3G06330.2 | 41.758 | 182 | 70 | 3 | 277 | 458 | 47 | 192 | 4.53e-36 | 135 |
| Msa0682820 | AT5G18760.1 | 41.209 | 182 | 71 | 4 | 277 | 458 | 201 | 346 | 1.65e-32 | 129 |
| Msa0682820 | AT5G18760.2 | 43.210 | 162 | 46 | 5 | 277 | 438 | 201 | 316 | 2.47e-27 | 113 |
| Msa0682820 | AT2G37950.1 | 38.235 | 102 | 60 | 2 | 233 | 333 | 40 | 139 | 3.14e-14 | 72.4 |
| Msa0682820 | AT5G05830.1 | 43.750 | 80 | 40 | 2 | 272 | 347 | 72 | 150 | 5.91e-11 | 62.8 |
Find 130 sgRNAs with CRISPR-Local
Find 237 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCACTTAGTTAATAGTTAT+TGG | 0.150386 | 4_4:+44867748 | None:intergenic |
| CTTATGGATGATTTGCCTTT+TGG | 0.195824 | 4_4:+44866230 | None:intergenic |
| ACAAAGAATGTGCTATTAAA+TGG | 0.203935 | 4_4:-44865480 | Msa0682820:CDS |
| ACTTTAATCACACATCTATA+TGG | 0.227461 | 4_4:-44863722 | Msa0682820:three_prime_UTR |
| CTATACCTAAAACTCAATTT+TGG | 0.238173 | 4_4:+44866197 | None:intergenic |
| TCATTGCCATTAGGAGAAAT+TGG | 0.239649 | 4_4:-44866041 | Msa0682820:CDS |
| ATCCTTCTTGCAACATTTGC+TGG | 0.241759 | 4_4:-44864024 | Msa0682820:CDS |
| TTTAAACTTCCAAGTTATTC+TGG | 0.255199 | 4_4:-44867651 | Msa0682820:five_prime_UTR |
| CTTGCAACATTTGCTGGTTT+CGG | 0.266668 | 4_4:-44864018 | Msa0682820:CDS |
| GTGTTCTTGATGGTATTTCT+AGG | 0.297442 | 4_4:+44866399 | None:intergenic |
| CACTCTTCTTGTGTTCTTGA+TGG | 0.312086 | 4_4:+44866389 | None:intergenic |
| TATTAAATGGTTTAGTATAA+AGG | 0.322304 | 4_4:-44865467 | Msa0682820:CDS |
| ATTAAATGGTTTAGTATAAA+GGG | 0.326909 | 4_4:-44865466 | Msa0682820:CDS |
| TTTCCACCATGAGTAGATTC+AGG | 0.327029 | 4_4:+44866008 | None:intergenic |
| CTACACACCGCCTCTTCTTC+AGG | 0.329720 | 4_4:+44865583 | None:intergenic |
| TCCTTTACTCGAGGAGTAGA+AGG | 0.334132 | 4_4:+44865775 | None:intergenic |
| TGCATAACTTATTGTGTATA+GGG | 0.367788 | 4_4:-44863756 | Msa0682820:three_prime_UTR |
| TAGGGTTTGGCAGGAAGTTC+CGG | 0.368420 | 4_4:-44865005 | Msa0682820:CDS |
| AATTGAGCAGACAAATAAAA+TGG | 0.369527 | 4_4:+44865031 | None:intergenic |
| CATAAGAAAATTCACTCTCT+TGG | 0.376527 | 4_4:+44866304 | None:intergenic |
| CTAAGTGGTATGGCTATCAT+TGG | 0.377267 | 4_4:-44867734 | Msa0682820:five_prime_UTR |
| AGACCTAATACACAGGAAAA+TGG | 0.380336 | 4_4:+44864729 | None:intergenic |
| GAATCTACTCATGGTGGAAA+TGG | 0.382585 | 4_4:-44866005 | Msa0682820:CDS |
| GAATGTCCAATTTCTCCTAA+TGG | 0.383436 | 4_4:+44866035 | None:intergenic |
| GACATGTGATGTCTGCAAAA+AGG | 0.391308 | 4_4:-44865437 | Msa0682820:CDS |
| TGCATCCTTCCAGTTTGCTC+TGG | 0.394539 | 4_4:-44864327 | Msa0682820:CDS |
| GGAGTAGGACTTGGTGTCAT+TGG | 0.395438 | 4_4:+44866338 | None:intergenic |
| TTGTCCTTGCTGTTGTTGGC+AGG | 0.397366 | 4_4:+44865835 | None:intergenic |
| AGAACTTCATCATTGCCATT+AGG | 0.398079 | 4_4:-44866050 | Msa0682820:CDS |
| ACAGCTACATTCCAACTTGA+AGG | 0.402108 | 4_4:+44865525 | None:intergenic |
| CTGCATAACTTATTGTGTAT+AGG | 0.405691 | 4_4:-44863757 | Msa0682820:three_prime_UTR |
| ATCCTTCCAGTTTGCTCTGG+TGG | 0.406030 | 4_4:-44864324 | Msa0682820:CDS |
| CTGTAAAGGCGAACTTGCTT+TGG | 0.411554 | 4_4:-44865506 | Msa0682820:CDS |
| CAGTGATGAGCAGGTTCATA+TGG | 0.413395 | 4_4:-44864355 | Msa0682820:CDS |
| CAAAGTACCTTGTGAACAAC+AGG | 0.414633 | 4_4:+44867500 | None:intergenic |
| ATAAGAAAATTCACTCTCTT+GGG | 0.420956 | 4_4:+44866305 | None:intergenic |
| CTTTAATCACACATCTATAT+GGG | 0.424176 | 4_4:-44863721 | Msa0682820:three_prime_UTR |
| TTGGTAAAATATTTACTCCT+AGG | 0.424681 | 4_4:-44866079 | Msa0682820:CDS |
| GACAATGATCTTGATATTGA+AGG | 0.430558 | 4_4:+44866104 | None:intergenic |
| TGCACGCAGTCAGCCACATC+TGG | 0.432809 | 4_4:-44865237 | Msa0682820:CDS |
| CACTATAGATTGATTGTGGT+TGG | 0.433741 | 4_4:+44863846 | None:intergenic |
| GGATCCAGAGTGTTCGAAAT+CGG | 0.434250 | 4_4:-44865384 | Msa0682820:CDS |
| ACAGCAAGGACAAAAGTATA+AGG | 0.436445 | 4_4:-44865825 | Msa0682820:CDS |
| ACGTCCCCGCCAAAGGATAC+TGG | 0.439438 | 4_4:-44865733 | Msa0682820:intron |
| ACCTTCCTGTCACTCTATTA+CGG | 0.442572 | 4_4:-44865405 | Msa0682820:CDS |
| CCTGCTTGTGTCATCGGTAG+AGG | 0.442836 | 4_4:+44863910 | None:intergenic |
| AGAGAACCACCAGAGCAAAC+TGG | 0.443716 | 4_4:+44864318 | None:intergenic |
| GAATATAGCTTCTCTTGCTA+TGG | 0.449520 | 4_4:-44863679 | Msa0682820:three_prime_UTR |
| TTGACTATACCAGTATCCTT+TGG | 0.457337 | 4_4:+44865724 | None:intergenic |
| ATTTGTGTCCAGTGATGAGC+AGG | 0.460699 | 4_4:-44864364 | Msa0682820:intron |
| ACAGGAAAATGGAAGAGATA+TGG | 0.465594 | 4_4:+44864740 | None:intergenic |
| CCTGGATCTGCAACACCAAA+AGG | 0.469145 | 4_4:-44866245 | Msa0682820:CDS |
| ACAGTAACAACGCCACGTTC+AGG | 0.470448 | 4_4:-44863874 | Msa0682820:CDS |
| TGTTGTCCTGCTTGTGTCAT+CGG | 0.477400 | 4_4:+44863904 | None:intergenic |
| TTCCACCATGAGTAGATTCA+GGG | 0.484995 | 4_4:+44866009 | None:intergenic |
| CTATACCAGTATCCTTTGGC+GGG | 0.485212 | 4_4:+44865728 | None:intergenic |
| TTCTCTTCCTGTTGTTCACA+AGG | 0.486153 | 4_4:-44867507 | Msa0682820:intron |
| TCCTTCTACTCCTCGAGTAA+AGG | 0.487258 | 4_4:-44865776 | Msa0682820:CDS |
| ACTCTCTTGGGAGTAGGAGT+TGG | 0.487747 | 4_4:+44866317 | None:intergenic |
| TAACTTATTGTGTATAGGGT+AGG | 0.492605 | 4_4:-44863752 | Msa0682820:three_prime_UTR |
| TAGATTGATTGTGGTTGGAT+TGG | 0.494569 | 4_4:+44863851 | None:intergenic |
| GTAGGAGTTGGAGTAGGACT+TGG | 0.496630 | 4_4:+44866329 | None:intergenic |
| GCTCCGACAAATAACTCTCC+TGG | 0.497454 | 4_4:-44866263 | Msa0682820:CDS |
| GCCAATAACTATTAACTAAG+TGG | 0.499884 | 4_4:-44867749 | Msa0682820:five_prime_UTR |
| GTCTGATCAGACTTCAAGTT+CGG | 0.504324 | 4_4:-44865211 | Msa0682820:intron |
| ATAGGATGATGATGACTCAA+TGG | 0.511888 | 4_4:-44866474 | Msa0682820:intron |
| TGGATCCGTAATAGAGTGAC+AGG | 0.523696 | 4_4:+44865400 | None:intergenic |
| TAGGATGATGATGACTCAAT+GGG | 0.524861 | 4_4:-44866473 | Msa0682820:CDS |
| GATCCAGGAGAGTTATTTGT+CGG | 0.525789 | 4_4:+44866260 | None:intergenic |
| CAGATGGAGAAGGAGATGGC+AGG | 0.526862 | 4_4:-44863956 | Msa0682820:CDS |
| GGCGGTGTGTAGAATCTGTC+TGG | 0.532774 | 4_4:-44865572 | Msa0682820:CDS |
| AACTTATTGTGTATAGGGTA+GGG | 0.536965 | 4_4:-44863751 | Msa0682820:three_prime_UTR |
| AAGTTGGAATGTAGCTGTAA+AGG | 0.537209 | 4_4:-44865520 | Msa0682820:CDS |
| ATATCAAGATCATTGTCGCT+TGG | 0.539732 | 4_4:-44866098 | Msa0682820:CDS |
| CGTGGCGTTGTTACTGTTCG+AGG | 0.540842 | 4_4:+44863880 | None:intergenic |
| GAAGAGGAAACTTCCCGAGT+TGG | 0.542266 | 4_4:+44866143 | None:intergenic |
| TAACTATTAACTAAGTGGTA+TGG | 0.544420 | 4_4:-44867744 | Msa0682820:five_prime_UTR |
| TGCTTCGATTAGGAGCTTCG+TGG | 0.547637 | 4_4:-44865082 | Msa0682820:intron |
| CTCTATGACATCATCAACCA+TGG | 0.553260 | 4_4:-44864700 | Msa0682820:CDS |
| GGACAAAAGTATAAGGAGGA+TGG | 0.553352 | 4_4:-44865818 | Msa0682820:CDS |
| AAAACAAAACCAGAATAACT+TGG | 0.555882 | 4_4:+44867642 | None:intergenic |
| CTATACACAATAAGTTATGC+AGG | 0.559973 | 4_4:+44863758 | None:intergenic |
| CTGCTTGTGTCATCGGTAGA+GGG | 0.562795 | 4_4:+44863911 | None:intergenic |
| GCTTGTCATTGTTAGCATGT+TGG | 0.565634 | 4_4:-44864981 | Msa0682820:CDS |
| AAATTCACTCTCTTGGGAGT+AGG | 0.568812 | 4_4:+44866311 | None:intergenic |
| GGTGGAAATGGAAGTGTTGG+CGG | 0.573518 | 4_4:-44865993 | Msa0682820:CDS |
| ATGCTAACAATGACAAGCAC+CGG | 0.575004 | 4_4:+44864986 | None:intergenic |
| CATTCCGATTTCGAACACTC+TGG | 0.575417 | 4_4:+44865380 | None:intergenic |
| GACACCGACAGATATTGAAA+AGG | 0.575703 | 4_4:-44866174 | Msa0682820:CDS |
| GAGTGGAAGTTCTATGCTTG+TGG | 0.576492 | 4_4:-44863986 | Msa0682820:CDS |
| ACTATACCAGTATCCTTTGG+CGG | 0.577961 | 4_4:+44865727 | None:intergenic |
| TCATTTCCTTCCTTTACTCG+AGG | 0.581239 | 4_4:+44865766 | None:intergenic |
| AGGAGGCGAGACCTTCAAGT+TGG | 0.587069 | 4_4:-44865536 | Msa0682820:CDS |
| GTTGAAGACGTCCCCGCCAA+AGG | 0.587869 | 4_4:-44865740 | Msa0682820:CDS |
| TTTGCACTATAGATTGATTG+TGG | 0.589452 | 4_4:+44863842 | None:intergenic |
| ACGGATACAGACACGGACAT+TGG | 0.590820 | 4_4:-44863620 | Msa0682820:three_prime_UTR |
| CATGGTTGATGATGTCATAG+AGG | 0.591035 | 4_4:+44864701 | None:intergenic |
| AAACATCACATGTTCCTCCC+AGG | 0.591425 | 4_4:-44866439 | Msa0682820:CDS |
| AACCAGCAAATGTTGCAAGA+AGG | 0.594657 | 4_4:+44864022 | None:intergenic |
| TCTACTCCTCGAGTAAAGGA+AGG | 0.597280 | 4_4:-44865772 | Msa0682820:CDS |
| TCAAACCCTGAATCTACTCA+TGG | 0.600239 | 4_4:-44866014 | Msa0682820:CDS |
| TTGTACTGATCTATGAAGCA+CGG | 0.601774 | 4_4:-44863639 | Msa0682820:three_prime_UTR |
| CATGGTGGAAATGGAAGTGT+TGG | 0.606041 | 4_4:-44865996 | Msa0682820:CDS |
| AGTGTTCGAAATCGGAATGG+TGG | 0.615884 | 4_4:-44865376 | Msa0682820:CDS |
| CAGAGTGTTCGAAATCGGAA+TGG | 0.618284 | 4_4:-44865379 | Msa0682820:CDS |
| TTGGGAGTAGGAGTTGGAGT+AGG | 0.618886 | 4_4:+44866323 | None:intergenic |
| CCTCTACCGATGACACAAGC+AGG | 0.621790 | 4_4:-44863910 | Msa0682820:CDS |
| TGAAGATATACCTGAAGAAG+AGG | 0.622698 | 4_4:-44865593 | Msa0682820:CDS |
| TCTATGACATCATCAACCAT+GGG | 0.623591 | 4_4:-44864699 | Msa0682820:CDS |
| GCTTCATTAGAGCAACAGCA+TGG | 0.624006 | 4_4:-44863934 | Msa0682820:CDS |
| AACCCTGAATCTACTCATGG+TGG | 0.624757 | 4_4:-44866011 | Msa0682820:CDS |
| AAAAGGCGAATACACCAACT+CGG | 0.626049 | 4_4:-44866157 | Msa0682820:CDS |
| CTGATCAGACGATCCAGATG+TGG | 0.626490 | 4_4:+44865224 | None:intergenic |
| TGACATCATCAACCATGGGT+AGG | 0.640751 | 4_4:-44864695 | Msa0682820:intron |
| GGAGAGCAGACCTAATACAC+AGG | 0.644216 | 4_4:+44864722 | None:intergenic |
| AAAGGCGAATACACCAACTC+GGG | 0.644552 | 4_4:-44866156 | Msa0682820:CDS |
| GCAAGGACAAAAGTATAAGG+AGG | 0.650576 | 4_4:-44865822 | Msa0682820:CDS |
| AACCACCAGAGCAAACTGGA+AGG | 0.657209 | 4_4:+44864322 | None:intergenic |
| TATACCAGTATCCTTTGGCG+GGG | 0.659834 | 4_4:+44865729 | None:intergenic |
| ATGAAGCACGGATACAGACA+CGG | 0.660955 | 4_4:-44863627 | Msa0682820:three_prime_UTR |
| TCCGTAATAGAGTGACAGGA+AGG | 0.661488 | 4_4:+44865404 | None:intergenic |
| GCTTAAAATCATACACTGAG+AGG | 0.668806 | 4_4:+44865969 | None:intergenic |
| TGGTTGGATTGGCCTGAACG+TGG | 0.672050 | 4_4:+44863862 | None:intergenic |
| AATGCCTGCCAACAACAGCA+AGG | 0.677333 | 4_4:-44865839 | Msa0682820:CDS |
| AGATATACCTGAAGAAGAGG+CGG | 0.681280 | 4_4:-44865590 | Msa0682820:CDS |
| CTGGTTGAATTATGTGAAGG+AGG | 0.682969 | 4_4:-44865553 | Msa0682820:CDS |
| ATGTGTTGTGAACCTACCCA+TGG | 0.700753 | 4_4:+44864683 | None:intergenic |
| GGTTTCGGTGTAGTAATGAG+TGG | 0.710495 | 4_4:-44864003 | Msa0682820:CDS |
| TGTCTGGTTGAATTATGTGA+AGG | 0.716899 | 4_4:-44865556 | Msa0682820:CDS |
| AGAATATAAACATGTCACTG+AGG | 0.722758 | 4_4:-44867576 | Msa0682820:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTATTTTCCAAAAAAAT+TGG | - | chr4_4:44864111-44864130 | Msa0682820:intron | 10.0% |
| !!! | TTCATTTTAGATTAGTAATT+TGG | + | chr4_4:44864213-44864232 | None:intergenic | 15.0% |
| !!! | TCTTTGATTTTTAATTCATT+TGG | - | chr4_4:44864296-44864315 | Msa0682820:CDS | 15.0% |
| !!! | CTATTTCATTTTGTATTTAT+AGG | - | chr4_4:44864863-44864882 | Msa0682820:intron | 15.0% |
| !! | TATTAAATGGTTTAGTATAA+AGG | - | chr4_4:44865888-44865907 | Msa0682820:intron | 15.0% |
| !! | ATTAAATGGTTTAGTATAAA+GGG | - | chr4_4:44865889-44865908 | Msa0682820:intron | 15.0% |
| !! | ATTTAAACAAAATAATGTCA+GGG | + | chr4_4:44866973-44866992 | None:intergenic | 15.0% |
| !! | AATTTAAACAAAATAATGTC+AGG | + | chr4_4:44866974-44866993 | None:intergenic | 15.0% |
| !! | TCATAAAAAAATCAGAAATT+AGG | + | chr4_4:44867271-44867290 | None:intergenic | 15.0% |
| !! | AAATTTGAAAACCAACAAAA+GGG | + | chr4_4:44864089-44864108 | None:intergenic | 20.0% |
| !! | AAAATTTGAAAACCAACAAA+AGG | + | chr4_4:44864090-44864109 | None:intergenic | 20.0% |
| !! | AGAAAACAGATAAAATTAGT+TGG | - | chr4_4:44864456-44864475 | Msa0682820:intron | 20.0% |
| !!! | GTATCTTTTAATAGTCAATT+TGG | - | chr4_4:44864590-44864609 | Msa0682820:intron | 20.0% |
| !! | AAATTTAGTGATCAAAATGA+CGG | - | chr4_4:44864760-44864779 | Msa0682820:CDS | 20.0% |
| !!! | ATTATTTTCATGAGATAAGT+TGG | + | chr4_4:44865419-44865438 | None:intergenic | 20.0% |
| !! | AAATTGACAAGTTAAAATGA+TGG | + | chr4_4:44865449-44865468 | None:intergenic | 20.0% |
| !!! | TTTATTTTCAAATGCTTTCT+TGG | - | chr4_4:44865706-44865725 | Msa0682820:intron | 20.0% |
| !! | TTGTATGATAAAGATTGATT+TGG | - | chr4_4:44866078-44866097 | Msa0682820:CDS | 20.0% |
| !! | AAAAGATCTTTATTGGATTT+GGG | + | chr4_4:44866219-44866238 | None:intergenic | 20.0% |
| !! | AAATCAGAAAAGATCTTTAT+TGG | + | chr4_4:44866226-44866245 | None:intergenic | 20.0% |
| !!! | TCTGATTTTCTCTTTTTTAT+AGG | - | chr4_4:44866565-44866584 | Msa0682820:intron | 20.0% |
| !!! | TTTTTTATAGGTGACAAAAA+TGG | - | chr4_4:44866577-44866596 | Msa0682820:intron | 20.0% |
| !!! | TTTTTATAGGTGACAAAAAT+GGG | - | chr4_4:44866578-44866597 | Msa0682820:intron | 20.0% |
| !!! | TCCATTTTGAATTTATAATG+TGG | - | chr4_4:44866735-44866754 | Msa0682820:intron | 20.0% |
| !! | TCCACATTATAAATTCAAAA+TGG | + | chr4_4:44866739-44866758 | None:intergenic | 20.0% |
| ! | ACCACTTAGTTAATAGTTAT+TGG | + | chr4_4:44863610-44863629 | None:intergenic | 25.0% |
| ! | TAACTATTAACTAAGTGGTA+TGG | - | chr4_4:44863611-44863630 | Msa0682820:three_prime_UTR | 25.0% |
| ! | TTTAAACTTCCAAGTTATTC+TGG | - | chr4_4:44863704-44863723 | Msa0682820:three_prime_UTR | 25.0% |
| ! | AAAACAAAACCAGAATAACT+TGG | + | chr4_4:44863716-44863735 | None:intergenic | 25.0% |
| !!! | CTTTTATCTTCTCTTTGTTT+TGG | - | chr4_4:44863907-44863926 | Msa0682820:CDS | 25.0% |
| !! | AATAAATAGTACCCTTTTGT+TGG | - | chr4_4:44864075-44864094 | Msa0682820:intron | 25.0% |
| ! | AACTGCATAATTCAAATTAG+AGG | + | chr4_4:44864157-44864176 | None:intergenic | 25.0% |
| !! | TACTATAGTTTTTGACATAC+TGG | + | chr4_4:44864398-44864417 | None:intergenic | 25.0% |
| ! | CAAAAACTATAGTACTTTGT+CGG | - | chr4_4:44864404-44864423 | Msa0682820:intron | 25.0% |
| ! | ACAATTGAACTGATTAATAG+TGG | + | chr4_4:44864482-44864501 | None:intergenic | 25.0% |
| ! | AGTTCAATTGTATTGTAGTT+TGG | - | chr4_4:44864491-44864510 | Msa0682820:intron | 25.0% |
| !! | TTTTGATCACTAAATTTGTG+AGG | + | chr4_4:44864757-44864776 | None:intergenic | 25.0% |
| ! | ATAAGAAAATTCACTCTCTT+GGG | + | chr4_4:44865053-44865072 | None:intergenic | 25.0% |
| !! | CTATACCTAAAACTCAATTT+TGG | + | chr4_4:44865161-44865180 | None:intergenic | 25.0% |
| !!! | CAAAATTGAGTTTTAGGTAT+AGG | - | chr4_4:44865159-44865178 | Msa0682820:intron | 25.0% |
| ! | TTGGTAAAATATTTACTCCT+AGG | - | chr4_4:44865276-44865295 | Msa0682820:intron | 25.0% |
| !! | ACAAAGAATGTGCTATTAAA+TGG | - | chr4_4:44865875-44865894 | Msa0682820:CDS | 25.0% |
| ! | GAAAAGATCTTTATTGGATT+TGG | + | chr4_4:44866220-44866239 | None:intergenic | 25.0% |
| ! | AATTGAGCAGACAAATAAAA+TGG | + | chr4_4:44866327-44866346 | None:intergenic | 25.0% |
| ! | TTGCTCAAGAAAACAAAAAT+AGG | + | chr4_4:44866400-44866419 | None:intergenic | 25.0% |
| ! | AATATAGTTCTCAAAGAAAG+CGG | + | chr4_4:44867090-44867109 | None:intergenic | 25.0% |
| ! | TGCATAACTTATTGTGTATA+GGG | - | chr4_4:44867599-44867618 | Msa0682820:exon | 25.0% |
| ! | ACTTTAATCACACATCTATA+TGG | - | chr4_4:44867633-44867652 | Msa0682820:five_prime_UTR | 25.0% |
| ! | CTTTAATCACACATCTATAT+GGG | - | chr4_4:44867634-44867653 | Msa0682820:five_prime_UTR | 25.0% |
| GCCAATAACTATTAACTAAG+TGG | - | chr4_4:44863606-44863625 | Msa0682820:three_prime_UTR | 30.0% | |
| AGAATATAAACATGTCACTG+AGG | - | chr4_4:44863779-44863798 | Msa0682820:three_prime_UTR | 30.0% | |
| AGTGATGTTTCTTCATACTA+AGG | - | chr4_4:44863941-44863960 | Msa0682820:CDS | 30.0% | |
| CTTCATACTAAGGTTCTTTA+AGG | - | chr4_4:44863951-44863970 | Msa0682820:CDS | 30.0% | |
| !!! | AGATCAAGCTCCAATTTTTT+TGG | + | chr4_4:44864124-44864143 | None:intergenic | 30.0% |
| !! | CTAGCTGATATTTGTTATCA+AGG | - | chr4_4:44864239-44864258 | Msa0682820:intron | 30.0% |
| !! | TATTTGTTATCAAGGATCAG+TGG | - | chr4_4:44864247-44864266 | Msa0682820:intron | 30.0% |
| !! | AGAAGATTTTGTTTCTTCCT+GGG | + | chr4_4:44864936-44864955 | None:intergenic | 30.0% |
| CATAAGAAAATTCACTCTCT+TGG | + | chr4_4:44865054-44865073 | None:intergenic | 30.0% | |
| GACAATGATCTTGATATTGA+AGG | + | chr4_4:44865254-44865273 | None:intergenic | 30.0% | |
| !! | TTCATTTTTCATGAATGCAG+AGG | + | chr4_4:44865681-44865700 | None:intergenic | 30.0% |
| ! | ATTTGTCTGCTCAATTTTGT+AGG | - | chr4_4:44866331-44866350 | Msa0682820:CDS | 30.0% |
| ! | TTTGTCTGCTCAATTTTGTA+GGG | - | chr4_4:44866332-44866351 | Msa0682820:CDS | 30.0% |
| ! | GTATAATCACATGTATCGAT+TGG | + | chr4_4:44866882-44866901 | None:intergenic | 30.0% |
| CTGATTCATTAGAATGAACT+GGG | + | chr4_4:44867187-44867206 | None:intergenic | 30.0% | |
| ! | ACTGATTCATTAGAATGAAC+TGG | + | chr4_4:44867188-44867207 | None:intergenic | 30.0% |
| TTTGCACTATAGATTGATTG+TGG | + | chr4_4:44867516-44867535 | None:intergenic | 30.0% | |
| CTATACACAATAAGTTATGC+AGG | + | chr4_4:44867600-44867619 | None:intergenic | 30.0% | |
| CTGCATAACTTATTGTGTAT+AGG | - | chr4_4:44867598-44867617 | Msa0682820:exon | 30.0% | |
| TAACTTATTGTGTATAGGGT+AGG | - | chr4_4:44867603-44867622 | Msa0682820:exon | 30.0% | |
| AACTTATTGTGTATAGGGTA+GGG | - | chr4_4:44867604-44867623 | Msa0682820:exon | 30.0% | |
| !! | ATAAGGATTGGTTTGAGTGT+TGG | + | chr4_4:44864019-44864038 | None:intergenic | 35.0% |
| AACACTCAAACCAATCCTTA+TGG | - | chr4_4:44864018-44864037 | Msa0682820:CDS | 35.0% | |
| !!! | GTGGTGTAGTTTGCTTTTTT+GGG | - | chr4_4:44864040-44864059 | Msa0682820:CDS | 35.0% |
| ACTTTGTCGGTAAAGATGAA+TGG | - | chr4_4:44864417-44864436 | Msa0682820:intron | 35.0% | |
| CTTTGTCGGTAAAGATGAAT+GGG | - | chr4_4:44864418-44864437 | Msa0682820:intron | 35.0% | |
| TAGTCCTTGAATGTATGAGA+CGG | - | chr4_4:44864538-44864557 | Msa0682820:intron | 35.0% | |
| ATAACCGTCTCATACATTCA+AGG | + | chr4_4:44864545-44864564 | None:intergenic | 35.0% | |
| GTGTCTTTCATCAGTTAGTT+TGG | - | chr4_4:44864622-44864641 | Msa0682820:intron | 35.0% | |
| TGATCACTAAATTTGTGAGG+TGG | + | chr4_4:44864754-44864773 | None:intergenic | 35.0% | |
| GATCAAAATGACGGTTTACT+CGG | - | chr4_4:44864769-44864788 | Msa0682820:CDS | 35.0% | |
| ! | ATAGGATGATGATGACTCAA+TGG | - | chr4_4:44864881-44864900 | Msa0682820:intron | 35.0% |
| ! | TAGGATGATGATGACTCAAT+GGG | - | chr4_4:44864882-44864901 | Msa0682820:intron | 35.0% |
| !! | GAGAAGATTTTGTTTCTTCC+TGG | + | chr4_4:44864937-44864956 | None:intergenic | 35.0% |
| ! | GTGTTCTTGATGGTATTTCT+AGG | + | chr4_4:44864959-44864978 | None:intergenic | 35.0% |
| ! | TTTTCTTATGACTTCTCGCT+CGG | - | chr4_4:44865064-44865083 | Msa0682820:CDS | 35.0% |
| !! | CTTATGGATGATTTGCCTTT+TGG | + | chr4_4:44865128-44865147 | None:intergenic | 35.0% |
| ! | TTTTGGCAGCATCTTTCTTA+TGG | + | chr4_4:44865144-44865163 | None:intergenic | 35.0% |
| ! | TGCTGCCAAAATTGAGTTTT+AGG | - | chr4_4:44865153-44865172 | Msa0682820:intron | 35.0% |
| ! | TTCGCCTTTTCAATATCTGT+CGG | + | chr4_4:44865188-44865207 | None:intergenic | 35.0% |
| ATATCAAGATCATTGTCGCT+TGG | - | chr4_4:44865257-44865276 | Msa0682820:intron | 35.0% | |
| ! | GATGAAGTTCTTTTCATCCT+AGG | + | chr4_4:44865296-44865315 | None:intergenic | 35.0% |
| AGAACTTCATCATTGCCATT+AGG | - | chr4_4:44865305-44865324 | Msa0682820:intron | 35.0% | |
| TCATTGCCATTAGGAGAAAT+TGG | - | chr4_4:44865314-44865333 | Msa0682820:intron | 35.0% | |
| GAATGTCCAATTTCTCCTAA+TGG | + | chr4_4:44865323-44865342 | None:intergenic | 35.0% | |
| GCTTAAAATCATACACTGAG+AGG | + | chr4_4:44865389-44865408 | None:intergenic | 35.0% | |
| ! | TTTTGCAGAAAAGAGAGACT+CGG | - | chr4_4:44865470-44865489 | Msa0682820:CDS | 35.0% |
| ! | ACAGCAAGGACAAAAGTATA+AGG | - | chr4_4:44865530-44865549 | Msa0682820:CDS | 35.0% |
| TTGACTATACCAGTATCCTT+TGG | + | chr4_4:44865634-44865653 | None:intergenic | 35.0% | |
| ! | GAAGATGATGATGATGATGA+TGG | - | chr4_4:44865739-44865758 | Msa0682820:CDS | 35.0% |
| TGAAGATATACCTGAAGAAG+AGG | - | chr4_4:44865762-44865781 | Msa0682820:CDS | 35.0% | |
| TGTCTGGTTGAATTATGTGA+AGG | - | chr4_4:44865799-44865818 | Msa0682820:CDS | 35.0% | |
| AAGTTGGAATGTAGCTGTAA+AGG | - | chr4_4:44865835-44865854 | Msa0682820:CDS | 35.0% | |
| CATGCAAATATGCTTCGATT+AGG | - | chr4_4:44866263-44866282 | Msa0682820:CDS | 35.0% | |
| ! | TTGTTTTCTTGAGCAACTGT+TGG | - | chr4_4:44866404-44866423 | Msa0682820:CDS | 35.0% |
| GAGAAAATCAGAAGCTACTT+TGG | + | chr4_4:44866557-44866576 | None:intergenic | 35.0% | |
| ACAGGAAAATGGAAGAGATA+TGG | + | chr4_4:44866618-44866637 | None:intergenic | 35.0% | |
| ! | CTTCCATTTTCCTGTGTATT+AGG | - | chr4_4:44866623-44866642 | Msa0682820:intron | 35.0% |
| AGACCTAATACACAGGAAAA+TGG | + | chr4_4:44866629-44866648 | None:intergenic | 35.0% | |
| TCTATGACATCATCAACCAT+GGG | - | chr4_4:44866656-44866675 | Msa0682820:intron | 35.0% | |
| CATGATATACAGAGTTGCAA+TGG | + | chr4_4:44866802-44866821 | None:intergenic | 35.0% | |
| CATTGCAACTCTGTATATCA+TGG | - | chr4_4:44866800-44866819 | Msa0682820:intron | 35.0% | |
| ACAAAATAATGTCAGGGTTG+TGG | + | chr4_4:44866967-44866986 | None:intergenic | 35.0% | |
| TGCTAATGCTTCTCTATGTA+GGG | + | chr4_4:44867247-44867266 | None:intergenic | 35.0% | |
| ATGCTAATGCTTCTCTATGT+AGG | + | chr4_4:44867248-44867267 | None:intergenic | 35.0% | |
| ! | TTATGATATCTGTCACTTGC+AGG | - | chr4_4:44867285-44867304 | Msa0682820:intron | 35.0% |
| TAGATTGATTGTGGTTGGAT+TGG | + | chr4_4:44867507-44867526 | None:intergenic | 35.0% | |
| CACTATAGATTGATTGTGGT+TGG | + | chr4_4:44867512-44867531 | None:intergenic | 35.0% | |
| GAATATAGCTTCTCTTGCTA+TGG | - | chr4_4:44867676-44867695 | Msa0682820:five_prime_UTR | 35.0% | |
| ! | TTGTACTGATCTATGAAGCA+CGG | - | chr4_4:44867716-44867735 | Msa0682820:five_prime_UTR | 35.0% |
| CTAAGTGGTATGGCTATCAT+TGG | - | chr4_4:44863621-44863640 | Msa0682820:three_prime_UTR | 40.0% | |
| TTCTCTTCCTGTTGTTCACA+AGG | - | chr4_4:44863848-44863867 | Msa0682820:CDS | 40.0% | |
| ! | CAAAGTACCTTGTGAACAAC+AGG | + | chr4_4:44863858-44863877 | None:intergenic | 40.0% |
| ACTCAAACCAATCCTTATGG+TGG | - | chr4_4:44864021-44864040 | Msa0682820:CDS | 40.0% | |
| AACTACACCACCATAAGGAT+TGG | + | chr4_4:44864031-44864050 | None:intergenic | 40.0% | |
| AAGCAAACTACACCACCATA+AGG | + | chr4_4:44864036-44864055 | None:intergenic | 40.0% | |
| !!! | GGTGGTGTAGTTTGCTTTTT+TGG | - | chr4_4:44864039-44864058 | Msa0682820:CDS | 40.0% |
| CGTGTCTTCTGTTAGTTACA+TGG | - | chr4_4:44864653-44864672 | Msa0682820:intron | 40.0% | |
| CAAGTGAAGTTACGAACAGA+AGG | - | chr4_4:44864676-44864695 | Msa0682820:intron | 40.0% | |
| !! | AGATTTTGTTTCTTCCTGGG+AGG | + | chr4_4:44864933-44864952 | None:intergenic | 40.0% |
| CACTCTTCTTGTGTTCTTGA+TGG | + | chr4_4:44864969-44864988 | None:intergenic | 40.0% | |
| AAATTCACTCTCTTGGGAGT+AGG | + | chr4_4:44865047-44865066 | None:intergenic | 40.0% | |
| GATCCAGGAGAGTTATTTGT+CGG | + | chr4_4:44865098-44865117 | None:intergenic | 40.0% | |
| GACACCGACAGATATTGAAA+AGG | - | chr4_4:44865181-44865200 | Msa0682820:intron | 40.0% | |
| AAAAGGCGAATACACCAACT+CGG | - | chr4_4:44865198-44865217 | Msa0682820:intron | 40.0% | |
| TCAAACCCTGAATCTACTCA+TGG | - | chr4_4:44865341-44865360 | Msa0682820:intron | 40.0% | |
| TTCCACCATGAGTAGATTCA+GGG | + | chr4_4:44865349-44865368 | None:intergenic | 40.0% | |
| TTTCCACCATGAGTAGATTC+AGG | + | chr4_4:44865350-44865369 | None:intergenic | 40.0% | |
| ! | GAATCTACTCATGGTGGAAA+TGG | - | chr4_4:44865350-44865369 | Msa0682820:intron | 40.0% |
| !!! | ACTTTTGTCCTTGCTGTTGT+TGG | + | chr4_4:44865527-44865546 | None:intergenic | 40.0% |
| ! | GCAAGGACAAAAGTATAAGG+AGG | - | chr4_4:44865533-44865552 | Msa0682820:CDS | 40.0% |
| ! | GGACAAAAGTATAAGGAGGA+TGG | - | chr4_4:44865537-44865556 | Msa0682820:CDS | 40.0% |
| TCATTTCCTTCCTTTACTCG+AGG | + | chr4_4:44865592-44865611 | None:intergenic | 40.0% | |
| ACTATACCAGTATCCTTTGG+CGG | + | chr4_4:44865631-44865650 | None:intergenic | 40.0% | |
| AGATATACCTGAAGAAGAGG+CGG | - | chr4_4:44865765-44865784 | Msa0682820:CDS | 40.0% | |
| CTGGTTGAATTATGTGAAGG+AGG | - | chr4_4:44865802-44865821 | Msa0682820:CDS | 40.0% | |
| ACAGCTACATTCCAACTTGA+AGG | + | chr4_4:44865833-44865852 | None:intergenic | 40.0% | |
| GACATGTGATGTCTGCAAAA+AGG | - | chr4_4:44865918-44865937 | Msa0682820:intron | 40.0% | |
| ATGTGATGTCTGCAAAAAGG+AGG | - | chr4_4:44865921-44865940 | Msa0682820:intron | 40.0% | |
| ACCTTCCTGTCACTCTATTA+CGG | - | chr4_4:44865950-44865969 | Msa0682820:intron | 40.0% | |
| ! | GTCTGATCAGACTTCAAGTT+CGG | - | chr4_4:44866144-44866163 | Msa0682820:CDS | 40.0% |
| TTAGCCATATCTGGATCAGA+CGG | + | chr4_4:44866186-44866205 | None:intergenic | 40.0% | |
| TCTGATCCAGATATGGCTAA+CGG | - | chr4_4:44866186-44866205 | Msa0682820:CDS | 40.0% | |
| TGCATGACTCACTCATTCAT+TGG | + | chr4_4:44866249-44866268 | None:intergenic | 40.0% | |
| ! | CTGCTCAATTTTGTAGGGTT+TGG | - | chr4_4:44866337-44866356 | Msa0682820:CDS | 40.0% |
| ! | TCAATTTTGTAGGGTTTGGC+AGG | - | chr4_4:44866341-44866360 | Msa0682820:CDS | 40.0% |
| ATGCTAACAATGACAAGCAC+CGG | + | chr4_4:44866372-44866391 | None:intergenic | 40.0% | |
| GCTTGTCATTGTTAGCATGT+TGG | - | chr4_4:44866374-44866393 | Msa0682820:CDS | 40.0% | |
| TAGGTGACAAAAATGGGAAC+TGG | - | chr4_4:44866584-44866603 | Msa0682820:intron | 40.0% | |
| !! | CATGGTTGATGATGTCATAG+AGG | + | chr4_4:44866657-44866676 | None:intergenic | 40.0% |
| CTCTATGACATCATCAACCA+TGG | - | chr4_4:44866655-44866674 | Msa0682820:intron | 40.0% | |
| ! | CGCGCATATATTTTACTCCT+TGG | - | chr4_4:44867061-44867080 | Msa0682820:intron | 40.0% |
| GGGATTCGTCTGATTGAATT+AGG | + | chr4_4:44867167-44867186 | None:intergenic | 40.0% | |
| ATCCTTCTTGCAACATTTGC+TGG | - | chr4_4:44867331-44867350 | Msa0682820:intron | 40.0% | |
| AACCAGCAAATGTTGCAAGA+AGG | + | chr4_4:44867336-44867355 | None:intergenic | 40.0% | |
| !! | CTTGCAACATTTGCTGGTTT+CGG | - | chr4_4:44867337-44867356 | Msa0682820:intron | 40.0% |
| !! | TGCTTGTGGAGTTTTTCAGA+TGG | - | chr4_4:44867383-44867402 | Msa0682820:intron | 40.0% |
| !! | TGGAGTTTTTCAGATGGAGA+AGG | - | chr4_4:44867389-44867408 | Msa0682820:intron | 40.0% |
| ! | TTTTCAGATGGAGAAGGAGA+TGG | - | chr4_4:44867395-44867414 | Msa0682820:intron | 40.0% |
| !! | AGGATTGGTTTGAGTGTTGG+TGG | + | chr4_4:44864016-44864035 | None:intergenic | 45.0% |
| ! | TTACGAACAGAAGGCACACT+CGG | - | chr4_4:44864685-44864704 | Msa0682820:intron | 45.0% |
| AAACATCACATGTTCCTCCC+AGG | - | chr4_4:44864916-44864935 | Msa0682820:intron | 45.0% | |
| AAAGGCGAATACACCAACTC+GGG | - | chr4_4:44865199-44865218 | Msa0682820:intron | 45.0% | |
| ! | CTTTTCTCGAGTGCTTGAAG+AGG | + | chr4_4:44865231-44865250 | None:intergenic | 45.0% |
| AACCCTGAATCTACTCATGG+TGG | - | chr4_4:44865344-44865363 | Msa0682820:intron | 45.0% | |
| ! | CATGGTGGAAATGGAAGTGT+TGG | - | chr4_4:44865359-44865378 | Msa0682820:CDS | 45.0% |
| TCCTTCTACTCCTCGAGTAA+AGG | - | chr4_4:44865579-44865598 | Msa0682820:CDS | 45.0% | |
| TCCTTTACTCGAGGAGTAGA+AGG | + | chr4_4:44865583-44865602 | None:intergenic | 45.0% | |
| TCTACTCCTCGAGTAAAGGA+AGG | - | chr4_4:44865583-44865602 | Msa0682820:CDS | 45.0% | |
| TATACCAGTATCCTTTGGCG+GGG | + | chr4_4:44865629-44865648 | None:intergenic | 45.0% | |
| CTATACCAGTATCCTTTGGC+GGG | + | chr4_4:44865630-44865649 | None:intergenic | 45.0% | |
| ! | CTGTAAAGGCGAACTTGCTT+TGG | - | chr4_4:44865849-44865868 | Msa0682820:CDS | 45.0% |
| TCCGTAATAGAGTGACAGGA+AGG | + | chr4_4:44865954-44865973 | None:intergenic | 45.0% | |
| TGGATCCGTAATAGAGTGAC+AGG | + | chr4_4:44865958-44865977 | None:intergenic | 45.0% | |
| ! | GGATCCAGAGTGTTCGAAAT+CGG | - | chr4_4:44865971-44865990 | Msa0682820:intron | 45.0% |
| CATTCCGATTTCGAACACTC+TGG | + | chr4_4:44865978-44865997 | None:intergenic | 45.0% | |
| ! | CAGAGTGTTCGAAATCGGAA+TGG | - | chr4_4:44865976-44865995 | Msa0682820:intron | 45.0% |
| AGTGTTCGAAATCGGAATGG+TGG | - | chr4_4:44865979-44865998 | Msa0682820:intron | 45.0% | |
| GCTCAGCTTGAAGACGTAAA+CGG | - | chr4_4:44866012-44866031 | Msa0682820:CDS | 45.0% | |
| CTCAGCTTGAAGACGTAAAC+GGG | - | chr4_4:44866013-44866032 | Msa0682820:CDS | 45.0% | |
| TTGAAGACGTAAACGGGTAC+AGG | - | chr4_4:44866019-44866038 | Msa0682820:CDS | 45.0% | |
| TAGACCGTCTGATCCAGATA+TGG | - | chr4_4:44866179-44866198 | Msa0682820:CDS | 45.0% | |
| TGACATCATCAACCATGGGT+AGG | - | chr4_4:44866660-44866679 | Msa0682820:intron | 45.0% | |
| ATGTGTTGTGAACCTACCCA+TGG | + | chr4_4:44866675-44866694 | None:intergenic | 45.0% | |
| GTGGATCAGTCAAAGTCAGT+TGG | - | chr4_4:44866754-44866773 | Msa0682820:intron | 45.0% | |
| ATTTGTGTCCAGTGATGAGC+AGG | - | chr4_4:44866991-44867010 | Msa0682820:intron | 45.0% | |
| CATATGAACCTGCTCATCAC+TGG | + | chr4_4:44867002-44867021 | None:intergenic | 45.0% | |
| CAGTGATGAGCAGGTTCATA+TGG | - | chr4_4:44867000-44867019 | Msa0682820:intron | 45.0% | |
| CTCAAAGAAAGCGGTTACCA+AGG | + | chr4_4:44867081-44867100 | None:intergenic | 45.0% | |
| ! | GGTTTCGGTGTAGTAATGAG+TGG | - | chr4_4:44867352-44867371 | Msa0682820:intron | 45.0% |
| GAGTGGAAGTTCTATGCTTG+TGG | - | chr4_4:44867369-44867388 | Msa0682820:intron | 45.0% | |
| GCTTCATTAGAGCAACAGCA+TGG | - | chr4_4:44867421-44867440 | Msa0682820:intron | 45.0% | |
| TGTTGTCCTGCTTGTGTCAT+CGG | + | chr4_4:44867454-44867473 | None:intergenic | 45.0% | |
| ATGAAGCACGGATACAGACA+CGG | - | chr4_4:44867728-44867747 | Msa0682820:five_prime_UTR | 45.0% | |
| !! | GGAGTAGGACTTGGTGTCAT+TGG | + | chr4_4:44865020-44865039 | None:intergenic | 50.0% |
| GTAGGAGTTGGAGTAGGACT+TGG | + | chr4_4:44865029-44865048 | None:intergenic | 50.0% | |
| TTGGGAGTAGGAGTTGGAGT+AGG | + | chr4_4:44865035-44865054 | None:intergenic | 50.0% | |
| ACTCTCTTGGGAGTAGGAGT+TGG | + | chr4_4:44865041-44865060 | None:intergenic | 50.0% | |
| GCTCCGACAAATAACTCTCC+TGG | - | chr4_4:44865092-44865111 | Msa0682820:intron | 50.0% | |
| !!! | CCTTTTGGTGTTGCAGATCC+AGG | + | chr4_4:44865113-44865132 | None:intergenic | 50.0% |
| CCTGGATCTGCAACACCAAA+AGG | - | chr4_4:44865110-44865129 | Msa0682820:intron | 50.0% | |
| GAAGAGGAAACTTCCCGAGT+TGG | + | chr4_4:44865215-44865234 | None:intergenic | 50.0% | |
| !! | GGTGGAAATGGAAGTGTTGG+CGG | - | chr4_4:44865362-44865381 | Msa0682820:CDS | 50.0% |
| AATGCCTGCCAACAACAGCA+AGG | - | chr4_4:44865516-44865535 | Msa0682820:CDS | 50.0% | |
| !! | TTGTCCTTGCTGTTGTTGGC+AGG | + | chr4_4:44865523-44865542 | None:intergenic | 50.0% |
| CTGATCAGACGATCCAGATG+TGG | + | chr4_4:44866134-44866153 | None:intergenic | 50.0% | |
| ! | TGTGTGCCGTTAGCCATATC+TGG | + | chr4_4:44866195-44866214 | None:intergenic | 50.0% |
| TGCTTCGATTAGGAGCTTCG+TGG | - | chr4_4:44866273-44866292 | Msa0682820:CDS | 50.0% | |
| TAGGGTTTGGCAGGAAGTTC+CGG | - | chr4_4:44866350-44866369 | Msa0682820:CDS | 50.0% | |
| GGAGAGCAGACCTAATACAC+AGG | + | chr4_4:44866636-44866655 | None:intergenic | 50.0% | |
| ! | TGCATCCTTCCAGTTTGCTC+TGG | - | chr4_4:44867028-44867047 | Msa0682820:intron | 50.0% |
| ! | ATCCTTCCAGTTTGCTCTGG+TGG | - | chr4_4:44867031-44867050 | Msa0682820:intron | 50.0% |
| AACCACCAGAGCAAACTGGA+AGG | + | chr4_4:44867036-44867055 | None:intergenic | 50.0% | |
| AGAGAACCACCAGAGCAAAC+TGG | + | chr4_4:44867040-44867059 | None:intergenic | 50.0% | |
| CTGCTTGTGTCATCGGTAGA+GGG | + | chr4_4:44867447-44867466 | None:intergenic | 50.0% | |
| ACAGTAACAACGCCACGTTC+AGG | - | chr4_4:44867481-44867500 | Msa0682820:intron | 50.0% | |
| ACGGATACAGACACGGACAT+TGG | - | chr4_4:44867735-44867754 | Msa0682820:five_prime_UTR | 50.0% | |
| CTACACACCGCCTCTTCTTC+AGG | + | chr4_4:44865775-44865794 | None:intergenic | 55.0% | |
| GGCGGTGTGTAGAATCTGTC+TGG | - | chr4_4:44865783-44865802 | Msa0682820:CDS | 55.0% | |
| AGGAGGCGAGACCTTCAAGT+TGG | - | chr4_4:44865819-44865838 | Msa0682820:CDS | 55.0% | |
| CAGATGGAGAAGGAGATGGC+AGG | - | chr4_4:44867399-44867418 | Msa0682820:intron | 55.0% | |
| CCTGCTTGTGTCATCGGTAG+AGG | + | chr4_4:44867448-44867467 | None:intergenic | 55.0% | |
| CCTCTACCGATGACACAAGC+AGG | - | chr4_4:44867445-44867464 | Msa0682820:intron | 55.0% | |
| CGTGGCGTTGTTACTGTTCG+AGG | + | chr4_4:44867478-44867497 | None:intergenic | 55.0% | |
| !! | TGGTTGGATTGGCCTGAACG+TGG | + | chr4_4:44867496-44867515 | None:intergenic | 55.0% |
| GTTGAAGACGTCCCCGCCAA+AGG | - | chr4_4:44865615-44865634 | Msa0682820:CDS | 60.0% | |
| ACGTCCCCGCCAAAGGATAC+TGG | - | chr4_4:44865622-44865641 | Msa0682820:CDS | 60.0% | |
| TGCACGCAGTCAGCCACATC+TGG | - | chr4_4:44866118-44866137 | Msa0682820:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 44863606 | 44867771 | 44863606 | ID=Msa0682820;Name=Msa0682820 |
| chr4_4 | mRNA | 44863606 | 44867771 | 44863606 | ID=Msa0682820-mRNA-1;Parent=Msa0682820;Name=Msa0682820-mRNA-1;_AED=0.12;_eAED=0.12;_QI=162|0.62|0.55|1|1|1|9|205|566 |
| chr4_4 | exon | 44863606 | 44864070 | 44863606 | ID=Msa0682820-mRNA-1:exon:10854;Parent=Msa0682820-mRNA-1 |
| chr4_4 | exon | 44864295 | 44864374 | 44864295 | ID=Msa0682820-mRNA-1:exon:10853;Parent=Msa0682820-mRNA-1 |
| chr4_4 | exon | 44864696 | 44864790 | 44864696 | ID=Msa0682820-mRNA-1:exon:10852;Parent=Msa0682820-mRNA-1 |
| chr4_4 | exon | 44864952 | 44865092 | 44864952 | ID=Msa0682820-mRNA-1:exon:10851;Parent=Msa0682820-mRNA-1 |
| chr4_4 | exon | 44865212 | 44865265 | 44865212 | ID=Msa0682820-mRNA-1:exon:10850;Parent=Msa0682820-mRNA-1 |
| chr4_4 | exon | 44865351 | 44865643 | 44865351 | ID=Msa0682820-mRNA-1:exon:10849;Parent=Msa0682820-mRNA-1 |
| chr4_4 | exon | 44865734 | 44865899 | 44865734 | ID=Msa0682820-mRNA-1:exon:10848;Parent=Msa0682820-mRNA-1 |
| chr4_4 | exon | 44865983 | 44866492 | 44865983 | ID=Msa0682820-mRNA-1:exon:10847;Parent=Msa0682820-mRNA-1 |
| chr4_4 | exon | 44867508 | 44867771 | 44867508 | ID=Msa0682820-mRNA-1:exon:10846;Parent=Msa0682820-mRNA-1 |
| chr4_4 | five_prime_UTR | 44867610 | 44867771 | 44867610 | ID=Msa0682820-mRNA-1:five_prime_utr;Parent=Msa0682820-mRNA-1 |
| chr4_4 | CDS | 44867508 | 44867609 | 44867508 | ID=Msa0682820-mRNA-1:cds;Parent=Msa0682820-mRNA-1 |
| chr4_4 | CDS | 44865983 | 44866492 | 44865983 | ID=Msa0682820-mRNA-1:cds;Parent=Msa0682820-mRNA-1 |
| chr4_4 | CDS | 44865734 | 44865899 | 44865734 | ID=Msa0682820-mRNA-1:cds;Parent=Msa0682820-mRNA-1 |
| chr4_4 | CDS | 44865351 | 44865643 | 44865351 | ID=Msa0682820-mRNA-1:cds;Parent=Msa0682820-mRNA-1 |
| chr4_4 | CDS | 44865212 | 44865265 | 44865212 | ID=Msa0682820-mRNA-1:cds;Parent=Msa0682820-mRNA-1 |
| chr4_4 | CDS | 44864952 | 44865092 | 44864952 | ID=Msa0682820-mRNA-1:cds;Parent=Msa0682820-mRNA-1 |
| chr4_4 | CDS | 44864696 | 44864790 | 44864696 | ID=Msa0682820-mRNA-1:cds;Parent=Msa0682820-mRNA-1 |
| chr4_4 | CDS | 44864295 | 44864374 | 44864295 | ID=Msa0682820-mRNA-1:cds;Parent=Msa0682820-mRNA-1 |
| chr4_4 | CDS | 44863811 | 44864070 | 44863811 | ID=Msa0682820-mRNA-1:cds;Parent=Msa0682820-mRNA-1 |
| chr4_4 | three_prime_UTR | 44863606 | 44863810 | 44863606 | ID=Msa0682820-mRNA-1:three_prime_utr;Parent=Msa0682820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
