Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0683070 | XP_003606457.2 | 98.276 | 232 | 4 | 0 | 1 | 232 | 1 | 232 | 1.77e-169 | 476 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0683070 | sp|Q7DLR9|PSB4_ARATH | 83.700 | 227 | 37 | 0 | 6 | 232 | 20 | 246 | 1.31e-148 | 416 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0683070 | G7JQG4 | 98.276 | 232 | 4 | 0 | 1 | 232 | 1 | 232 | 8.46e-170 | 476 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0163040 | Msa0683070 | 0.806379 | 8.462837e-50 | -8.615850e-47 |
| Msa0288080 | Msa0683070 | 0.822252 | 2.615803e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0683070 | MtrunA17_Chr4g0029711 | 98.276 | 232 | 4 | 0 | 1 | 232 | 1 | 232 | 1.63e-173 | 476 |
| Msa0683070 | MtrunA17_Chr6g0484471 | 91.379 | 232 | 20 | 0 | 1 | 232 | 1 | 232 | 1.81e-163 | 451 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0683070 | AT1G56450.1 | 83.700 | 227 | 37 | 0 | 6 | 232 | 20 | 246 | 1.33e-149 | 416 |
Find 84 sgRNAs with CRISPR-Local
Find 344 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTACTTCATTGTATTAAA+TGG | 0.139685 | 4_4:+45432927 | Msa0683070:three_prime_UTR |
| ATTGGGAAACATTCCCTTAT+TGG | 0.168463 | 4_4:+45429920 | Msa0683070:CDS |
| ATTTAATACAATGAAGTAAT+TGG | 0.224949 | 4_4:-45432925 | None:intergenic |
| GATTCTCATGGCTTCTGATA+TGG | 0.255390 | 4_4:+45428895 | Msa0683070:CDS |
| TGAGGAAGGTGTTAGGTTAC+TGG | 0.271577 | 4_4:+45430544 | Msa0683070:CDS |
| TTTCTCCACTGGCACCAATA+AGG | 0.276380 | 4_4:-45429934 | None:intergenic |
| AATATGAAATTAAATGAAAC+TGG | 0.285948 | 4_4:+45432875 | Msa0683070:three_prime_UTR |
| AAGAGATGAGAAAAGGAAAA+TGG | 0.332885 | 4_4:-45433103 | None:intergenic |
| AAGAATCAGCAAAATTAAAA+TGG | 0.335455 | 4_4:-45433062 | None:intergenic |
| TTCTCCACTGGCACCAATAA+GGG | 0.339803 | 4_4:-45429933 | None:intergenic |
| TAACTCGGGTGATGTATAAT+AGG | 0.358277 | 4_4:+45430253 | Msa0683070:CDS |
| GTTGAGCGGGTGAAGCCTAT+TGG | 0.380343 | 4_4:+45429902 | Msa0683070:CDS |
| TTGTGGAACTCCCTTGTACT+TGG | 0.381836 | 4_4:+45430294 | Msa0683070:CDS |
| ATAAGGGAATGTTTCCCAAT+AGG | 0.385721 | 4_4:-45429917 | None:intergenic |
| AAATAGTTGTGCACCTCCTT+AGG | 0.402257 | 4_4:-45430231 | None:intergenic |
| TAAGCTTTGAGGAAGGTGTT+AGG | 0.415164 | 4_4:+45430537 | Msa0683070:CDS |
| ATTCTCATGGCTTCTGATAT+GGG | 0.417780 | 4_4:+45428896 | Msa0683070:CDS |
| AATATACTGATAGGTTCCTA+TGG | 0.426575 | 4_4:+45429857 | Msa0683070:intron |
| TTGAGCGGGTGAAGCCTATT+GGG | 0.432842 | 4_4:+45429903 | Msa0683070:CDS |
| TTTAGGTATCCTTATGTGAC+TGG | 0.434414 | 4_4:+45428839 | Msa0683070:intron |
| TGCAATTAAGAGATGAGAAA+AGG | 0.452082 | 4_4:-45433110 | None:intergenic |
| GCATGAAAATTTAAGCTTTG+AGG | 0.455532 | 4_4:+45430526 | Msa0683070:CDS |
| GAAGATGACCACATAGCTAC+TGG | 0.459759 | 4_4:+45430461 | Msa0683070:CDS |
| CATTTAATTTCATATTCAAA+CGG | 0.470007 | 4_4:-45432868 | None:intergenic |
| TGCCACTCATCACGAAGAAT+CGG | 0.486184 | 4_4:-45430506 | None:intergenic |
| TGGAACTCCCTTGTACTTGG+TGG | 0.487933 | 4_4:+45430297 | Msa0683070:CDS |
| GTCTGCTGTCAACAAGATAC+AGG | 0.491598 | 4_4:+45430601 | Msa0683070:CDS |
| AAAATCACTTATTTCTCCAC+TGG | 0.494634 | 4_4:-45429945 | None:intergenic |
| CTTATTCAGGTTAACATGAT+CGG | 0.498397 | 4_4:+45430428 | Msa0683070:intron |
| GTTGCTATTAAATACAAAGA+TGG | 0.506960 | 4_4:+45428872 | Msa0683070:CDS |
| ATGACAACATGTGGGATGAC+GGG | 0.507953 | 4_4:+45430196 | Msa0683070:CDS |
| TTGCTATTAAATACAAAGAT+GGG | 0.508049 | 4_4:+45428873 | Msa0683070:CDS |
| TCTTCACACCACCAAGTACA+AGG | 0.508905 | 4_4:-45430305 | None:intergenic |
| ATAGCTAAAATGACTGAAGA+AGG | 0.510679 | 4_4:+45432754 | Msa0683070:CDS |
| GTACTTGGTGGTGTGAAGAA+TGG | 0.513027 | 4_4:+45430309 | Msa0683070:CDS |
| TACTTGGTGGTGTGAAGAAT+GGG | 0.515172 | 4_4:+45430310 | Msa0683070:CDS |
| ACAGAGGATCCAGTCACATA+AGG | 0.515515 | 4_4:-45428848 | None:intergenic |
| AATCCCACAGTTGGTGCTGA+AGG | 0.522601 | 4_4:+45432835 | Msa0683070:CDS |
| TGGGATGACGGGAATTCTCT+AGG | 0.530096 | 4_4:+45430207 | Msa0683070:CDS |
| CGGGAATTCTCTAGGACCTA+AGG | 0.530833 | 4_4:+45430215 | Msa0683070:CDS |
| AATGACAACATGTGGGATGA+CGG | 0.531071 | 4_4:+45430195 | Msa0683070:CDS |
| AGTGGTGTACTGCAAACAAA+AGG | 0.536927 | 4_4:-45428558 | None:intergenic |
| CAGTTGGTGCTGAAGGTTCG+TGG | 0.538915 | 4_4:+45432842 | Msa0683070:CDS |
| CATTCCCTTATTGGTGCCAG+TGG | 0.542882 | 4_4:+45429929 | Msa0683070:CDS |
| TCCATTGTTTGATTTGTCGA+AGG | 0.550571 | 4_4:-45428628 | None:intergenic |
| ATACAAAGATGGGATTCTCA+TGG | 0.559607 | 4_4:+45428883 | Msa0683070:CDS |
| GAAAATTTAAGCTTTGAGGA+AGG | 0.566096 | 4_4:+45430530 | Msa0683070:CDS |
| GCGATACAAGAGTGTTGAGC+GGG | 0.569229 | 4_4:+45429889 | Msa0683070:CDS |
| CATCCCACATGTTGTCATTG+AGG | 0.570599 | 4_4:-45430191 | None:intergenic |
| GCTTTCAAGAATCCCACAGT+TGG | 0.572715 | 4_4:+45432826 | Msa0683070:CDS |
| GGCCGATTCTTCGTGATGAG+TGG | 0.581874 | 4_4:+45430504 | Msa0683070:CDS |
| TAATTGCAATGACATCAGTA+AGG | 0.587440 | 4_4:+45433125 | Msa0683070:three_prime_UTR |
| GTAACAAGTTCAACCCTTTG+TGG | 0.588106 | 4_4:+45430277 | Msa0683070:CDS |
| AGGTGCACAACTATTTAACT+CGG | 0.589584 | 4_4:+45430238 | Msa0683070:CDS |
| GTACAAGGGAGTTCCACAAA+GGG | 0.594100 | 4_4:-45430290 | None:intergenic |
| GGCTAGGAAATCATCTTGCT+AGG | 0.594955 | 4_4:+45430483 | Msa0683070:CDS |
| GACCACATAGCTACTGGGCT+AGG | 0.599628 | 4_4:+45430467 | Msa0683070:CDS |
| AATCAGCAAAATTAAAATGG+TGG | 0.600803 | 4_4:-45433059 | None:intergenic |
| ACACTCTTGTATCGCAGAGT+AGG | 0.601262 | 4_4:-45429881 | None:intergenic |
| ATATACTGATAGGTTCCTAT+GGG | 0.602714 | 4_4:+45429858 | Msa0683070:intron |
| CGAACCTTCAGCACCAACTG+TGG | 0.603921 | 4_4:-45432839 | None:intergenic |
| GGTTCTCTGTGATTCAGCTA+CGG | 0.612448 | 4_4:-45428653 | None:intergenic |
| TTCCTAGCCCAGTAGCTATG+TGG | 0.613136 | 4_4:-45430469 | None:intergenic |
| GCTTCAAAGAACTAATGAGA+AGG | 0.615136 | 4_4:-45428601 | None:intergenic |
| GTATCGCAGAGTAGGCCCAT+AGG | 0.616930 | 4_4:-45429873 | None:intergenic |
| AAGATGACCACATAGCTACT+GGG | 0.624683 | 4_4:+45430462 | Msa0683070:CDS |
| AGCCAAGGCCTACCGTGCCG+AGG | 0.632061 | 4_4:-45430341 | None:intergenic |
| TCCTTCGACAAATCAAACAA+TGG | 0.639729 | 4_4:+45428627 | Msa0683070:exon |
| AGTACAAGGGAGTTCCACAA+AGG | 0.649488 | 4_4:-45430291 | None:intergenic |
| TTATGTGACTGGATCCTCTG+TGG | 0.651498 | 4_4:+45428850 | Msa0683070:CDS |
| CTCATGGCTTCTGATATGGG+AGG | 0.651719 | 4_4:+45428899 | Msa0683070:CDS |
| GAACCTTCAGCACCAACTGT+GGG | 0.652084 | 4_4:-45432838 | None:intergenic |
| TAAGCTCGTCGAGGTAACGT+TGG | 0.657412 | 4_4:-45429976 | None:intergenic |
| AAGAATGGGCAAAAGTACCT+CGG | 0.660319 | 4_4:+45430324 | Msa0683070:CDS |
| TGCGATACAAGAGTGTTGAG+CGG | 0.664038 | 4_4:+45429888 | Msa0683070:CDS |
| GGTGCACAACTATTTAACTC+GGG | 0.664085 | 4_4:+45430239 | Msa0683070:CDS |
| CTTCACACCACCAAGTACAA+GGG | 0.675705 | 4_4:-45430304 | None:intergenic |
| GAATTCTCTAGGACCTAAGG+AGG | 0.683114 | 4_4:+45430218 | Msa0683070:CDS |
| TTTGAGGTACGAGATCGAAG+TGG | 0.685103 | 4_4:-45428576 | None:intergenic |
| TGGGCAAAAGTACCTCGGCA+CGG | 0.687461 | 4_4:+45430329 | Msa0683070:CDS |
| GTAGCCTCAATGACAACATG+TGG | 0.690284 | 4_4:+45430187 | Msa0683070:intron |
| AGACTTACATAAGCTCGTCG+AGG | 0.707039 | 4_4:-45429985 | None:intergenic |
| TAGCCTCAATGACAACATGT+GGG | 0.733746 | 4_4:+45430188 | Msa0683070:intron |
| GTATTTAATAGCAACCACAG+AGG | 0.775432 | 4_4:-45428864 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAAAAAAAATAATAAT+TGG | - | chr4_4:45429194-45429213 | None:intergenic | 0.0% |
| !! | ATCTTAAATTTACAATTATT+AGG | + | chr4_4:45430860-45430879 | Msa0683070:intron | 10.0% |
| !! | TCTTAAATTTACAATTATTA+GGG | + | chr4_4:45430861-45430880 | Msa0683070:intron | 10.0% |
| !! | TTAAAAGTAACAATTTATAA+AGG | - | chr4_4:45432656-45432675 | None:intergenic | 10.0% |
| !!! | ATTAGCTTTTAAATAAGTTT+AGG | + | chr4_4:45429005-45429024 | Msa0683070:intron | 15.0% |
| !! | AAGATAAAGACAATAAAATT+TGG | + | chr4_4:45430023-45430042 | Msa0683070:intron | 15.0% |
| !! | TAATTCTTTAATAAGATGTA+AGG | + | chr4_4:45430703-45430722 | Msa0683070:intron | 15.0% |
| !! | AATTCTTTAATAAGATGTAA+GGG | + | chr4_4:45430704-45430723 | Msa0683070:intron | 15.0% |
| !!! | AAACCAATTTATTTTTCATT+TGG | + | chr4_4:45431132-45431151 | Msa0683070:intron | 15.0% |
| !! | TTTCCAAATGAAAAATAAAT+TGG | - | chr4_4:45431138-45431157 | None:intergenic | 15.0% |
| !!! | CATTTAATTTCATATTCAAA+CGG | - | chr4_4:45432871-45432890 | None:intergenic | 15.0% |
| !! | AATATGAAATTAAATGAAAC+TGG | + | chr4_4:45432875-45432894 | Msa0683070:three_prime_UTR | 15.0% |
| !! | ATTTAATACAATGAAGTAAT+TGG | - | chr4_4:45432928-45432947 | None:intergenic | 15.0% |
| !! | AATTACTTCATTGTATTAAA+TGG | + | chr4_4:45432927-45432946 | Msa0683070:three_prime_UTR | 15.0% |
| !!! | TTTTCAATTTACTCAGTTTA+TGG | + | chr4_4:45428732-45428751 | Msa0683070:intron | 20.0% |
| !! | TAAAAATCAAACCAACATTT+AGG | - | chr4_4:45428823-45428842 | None:intergenic | 20.0% |
| !!! | TAAATGTTGGTTTGATTTTT+AGG | + | chr4_4:45428822-45428841 | Msa0683070:intron | 20.0% |
| !!! | TTGCTATTAAATACAAAGAT+GGG | + | chr4_4:45428873-45428892 | Msa0683070:CDS | 20.0% |
| !! | TAAAAATAAGTCAATCCAAA+CGG | - | chr4_4:45428966-45428985 | None:intergenic | 20.0% |
| !!! | CAAATTAACACAACTATTTT+TGG | - | chr4_4:45429566-45429585 | None:intergenic | 20.0% |
| !! | ATTGAAAGAAAATAAAACAC+TGG | - | chr4_4:45429626-45429645 | None:intergenic | 20.0% |
| !! | TGTATTTATGAATCTTATTC+AGG | + | chr4_4:45430415-45430434 | Msa0683070:intron | 20.0% |
| !! | GTCTAAATTAAAAAACAGAA+AGG | + | chr4_4:45430770-45430789 | Msa0683070:intron | 20.0% |
| !!! | AACTTGTTTTAAGAGAAAAT+TGG | + | chr4_4:45431353-45431372 | Msa0683070:intron | 20.0% |
| !! | ATAATGAAAATACTCTCTAA+AGG | + | chr4_4:45432088-45432107 | Msa0683070:intron | 20.0% |
| !! | TAATGAAAATACTCTCTAAA+GGG | + | chr4_4:45432089-45432108 | Msa0683070:intron | 20.0% |
| !! | AATTGAAACAGAAAAAGATA+TGG | - | chr4_4:45432418-45432437 | None:intergenic | 20.0% |
| !! | ATTGCTGAAAAATAAATATC+AGG | - | chr4_4:45433010-45433029 | None:intergenic | 20.0% |
| !!! | TGATATTTATTTTTCAGCAA+TGG | + | chr4_4:45433009-45433028 | Msa0683070:three_prime_UTR | 20.0% |
| !! | AAGAATCAGCAAAATTAAAA+TGG | - | chr4_4:45433065-45433084 | None:intergenic | 20.0% |
| !! | TTTGAAATTGACCTAAATGT+TGG | + | chr4_4:45428809-45428828 | Msa0683070:intron | 25.0% |
| !! | GTTGCTATTAAATACAAAGA+TGG | + | chr4_4:45428872-45428891 | Msa0683070:CDS | 25.0% |
| ! | AAGCACTTCATTAACTAATT+TGG | - | chr4_4:45429385-45429404 | None:intergenic | 25.0% |
| !! | ATGTTTTCCTTCTTTTATGT+TGG | + | chr4_4:45429664-45429683 | Msa0683070:intron | 25.0% |
| ! | GTAATATCCAACATAAAAGA+AGG | - | chr4_4:45429674-45429693 | None:intergenic | 25.0% |
| ! | TGCATATTGAATATACTGAT+AGG | + | chr4_4:45429848-45429867 | Msa0683070:intron | 25.0% |
| !!! | TTAGTCAATTGATTTGCATT+TGG | + | chr4_4:45430046-45430065 | Msa0683070:intron | 25.0% |
| ! | GTTCAAAATCAACACTTAAA+GGG | - | chr4_4:45430157-45430176 | None:intergenic | 25.0% |
| ! | AGTTCAAAATCAACACTTAA+AGG | - | chr4_4:45430158-45430177 | None:intergenic | 25.0% |
| !!! | TAAGTGTTGATTTTGAACTT+TGG | + | chr4_4:45430159-45430178 | Msa0683070:intron | 25.0% |
| ! | CAAAATAAAAAGAAAAGCCA+AGG | - | chr4_4:45430359-45430378 | None:intergenic | 25.0% |
| !!! | GTTATTTTCTATGCAATTGA+GGG | - | chr4_4:45430675-45430694 | None:intergenic | 25.0% |
| !!! | AGTTATTTTCTATGCAATTG+AGG | - | chr4_4:45430676-45430695 | None:intergenic | 25.0% |
| !! | TTGAAATATACACTCAGTTT+TGG | + | chr4_4:45430748-45430767 | Msa0683070:intron | 25.0% |
| ! | AATCGAAATATCATGATGTA+TGG | + | chr4_4:45430793-45430812 | Msa0683070:intron | 25.0% |
| !! | GATAATGATCGTTTATTTCT+TGG | + | chr4_4:45431043-45431062 | Msa0683070:intron | 25.0% |
| ! | TTCAATCCCAAATAAAGAAA+AGG | - | chr4_4:45431270-45431289 | None:intergenic | 25.0% |
| !!! | TAATTTCATGCAGTTTGTTT+TGG | + | chr4_4:45431484-45431503 | Msa0683070:intron | 25.0% |
| ! | AAAAAGTAATAGTAGTACAC+TGG | + | chr4_4:45431695-45431714 | Msa0683070:intron | 25.0% |
| ! | GGACTATAATATAACAGAAT+GGG | + | chr4_4:45432110-45432129 | Msa0683070:intron | 25.0% |
| ! | TCTCTTAATTTCATCTTGTA+AGG | + | chr4_4:45432378-45432397 | Msa0683070:intron | 25.0% |
| !!! | TTTTAACTGTAAATGTAACC+AGG | - | chr4_4:45432454-45432473 | None:intergenic | 25.0% |
| ! | ATTCTCGTTAAAAACATACT+GGG | + | chr4_4:45432795-45432814 | Msa0683070:CDS | 25.0% |
| ! | AATCAGCAAAATTAAAATGG+TGG | - | chr4_4:45433062-45433081 | None:intergenic | 25.0% |
| ! | AACTAATGAGAAGGTTTTTG+AGG | - | chr4_4:45428595-45428614 | None:intergenic | 30.0% |
| TCTCTAGTAAATTCATTCGT+TGG | + | chr4_4:45428700-45428719 | Msa0683070:intron | 30.0% | |
| TGCAATTTCAAACCTTACTT+TGG | + | chr4_4:45428939-45428958 | Msa0683070:intron | 30.0% | |
| GCAATTTCAAACCTTACTTT+GGG | + | chr4_4:45428940-45428959 | Msa0683070:intron | 30.0% | |
| TTGGCTTATTGTTGAGATTA+TGG | - | chr4_4:45429125-45429144 | None:intergenic | 30.0% | |
| GAATAAGTGAAATGTGCAAA+GGG | - | chr4_4:45429158-45429177 | None:intergenic | 30.0% | |
| TGAATAAGTGAAATGTGCAA+AGG | - | chr4_4:45429159-45429178 | None:intergenic | 30.0% | |
| TTCTGTGTTAGTTAATGAAG+TGG | + | chr4_4:45429233-45429252 | Msa0683070:intron | 30.0% | |
| TCTGTGTTAGTTAATGAAGT+GGG | + | chr4_4:45429234-45429253 | Msa0683070:intron | 30.0% | |
| !!! | CGGTTAATGAGTTTTAGTTA+AGG | + | chr4_4:45429267-45429286 | Msa0683070:intron | 30.0% |
| CTAAAACTCATTAACCACTA+AGG | - | chr4_4:45429411-45429430 | None:intergenic | 30.0% | |
| !!! | TGGTTAATGAGTTTTAGTTG+AGG | + | chr4_4:45429414-45429433 | Msa0683070:intron | 30.0% |
| TCTTAATACTCTGATTCCTA+GGG | - | chr4_4:45429543-45429562 | None:intergenic | 30.0% | |
| TATGTTGGATATTACACTCT+TGG | + | chr4_4:45429679-45429698 | Msa0683070:intron | 30.0% | |
| ! | AAAATCAGCCCAATATTTTC+CGG | - | chr4_4:45429811-45429830 | None:intergenic | 30.0% |
| AATATACTGATAGGTTCCTA+TGG | + | chr4_4:45429857-45429876 | Msa0683070:intron | 30.0% | |
| ATATACTGATAGGTTCCTAT+GGG | + | chr4_4:45429858-45429877 | Msa0683070:intron | 30.0% | |
| ! | AAAATCACTTATTTCTCCAC+TGG | - | chr4_4:45429948-45429967 | None:intergenic | 30.0% |
| ! | TGGAGAAATAAGTGATTTTC+AGG | + | chr4_4:45429949-45429968 | Msa0683070:CDS | 30.0% |
| ! | AATCTGAAATAACTGAGTTG+CGG | - | chr4_4:45430117-45430136 | None:intergenic | 30.0% |
| ! | CTTATTCAGGTTAACATGAT+CGG | + | chr4_4:45430428-45430447 | Msa0683070:intron | 30.0% |
| GCATGAAAATTTAAGCTTTG+AGG | + | chr4_4:45430526-45430545 | Msa0683070:CDS | 30.0% | |
| !! | GAAAATTTAAGCTTTGAGGA+AGG | + | chr4_4:45430530-45430549 | Msa0683070:CDS | 30.0% |
| TATATTTCAACAACCTCCAT+AGG | - | chr4_4:45430738-45430757 | None:intergenic | 30.0% | |
| ! | TTTCATCAGTTTTTCACTTG+TGG | + | chr4_4:45430990-45431009 | Msa0683070:intron | 30.0% |
| ! | TGTGGTTTGTCAATGAAATT+TGG | + | chr4_4:45431008-45431027 | Msa0683070:intron | 30.0% |
| ! | TTTATTTCTTGGTTTCTGCT+AGG | + | chr4_4:45431054-45431073 | Msa0683070:intron | 30.0% |
| TAAAAGCAGTTTAACTAGTG+AGG | + | chr4_4:45431218-45431237 | Msa0683070:intron | 30.0% | |
| !! | ATGGCACCTTTTCTTTATTT+GGG | + | chr4_4:45431261-45431280 | Msa0683070:intron | 30.0% |
| ! | AAAAAGATGGAGGATTTTTG+AGG | + | chr4_4:45431324-45431343 | Msa0683070:intron | 30.0% |
| CAAATATTTGCTTAACGGAA+AGG | - | chr4_4:45431387-45431406 | None:intergenic | 30.0% | |
| TTCCGTTAAGCAAATATTTG+AGG | + | chr4_4:45431387-45431406 | Msa0683070:intron | 30.0% | |
| AGCCTCAAATATTTGCTTAA+CGG | - | chr4_4:45431392-45431411 | None:intergenic | 30.0% | |
| TATAGAATCCTTACTGTACA+AGG | + | chr4_4:45431521-45431540 | Msa0683070:intron | 30.0% | |
| TACGAAAAAAATGTCACTAC+CGG | + | chr4_4:45431601-45431620 | Msa0683070:intron | 30.0% | |
| !! | ATGGAACTTTAAAGCTCTAA+GGG | + | chr4_4:45431732-45431751 | Msa0683070:intron | 30.0% |
| AGGTTATTTGCAAAACTAAC+TGG | + | chr4_4:45431762-45431781 | Msa0683070:intron | 30.0% | |
| ! | ATTGGATTTTAAATCCACTC+CGG | + | chr4_4:45431797-45431816 | Msa0683070:intron | 30.0% |
| !! | TAAAAGTATCGAGCATATGT+AGG | - | chr4_4:45431877-45431896 | None:intergenic | 30.0% |
| GAATTAGGAATTAAACCATG+AGG | + | chr4_4:45431934-45431953 | Msa0683070:intron | 30.0% | |
| ! | AGGATAAGGTGAATCTTTTT+GGG | + | chr4_4:45432021-45432040 | Msa0683070:intron | 30.0% |
| GGGACTATAATATAACAGAA+TGG | + | chr4_4:45432109-45432128 | Msa0683070:intron | 30.0% | |
| ! | AGAGAGATAGACACATATTT+TGG | + | chr4_4:45432238-45432257 | Msa0683070:intron | 30.0% |
| !! | ATATTTTGGAAAGACAGAGA+TGG | + | chr4_4:45432252-45432271 | Msa0683070:intron | 30.0% |
| GAAAAAGATATGGTTAGAGT+CGG | - | chr4_4:45432408-45432427 | None:intergenic | 30.0% | |
| !!! | CAATTCAGTTTTTGTTTTCC+TGG | + | chr4_4:45432433-45432452 | Msa0683070:intron | 30.0% |
| !! | CATTTCTTAGCTTTTTCTGT+TGG | + | chr4_4:45432592-45432611 | Msa0683070:intron | 30.0% |
| ! | TTTTTCTGTTGGTACAATCT+TGG | + | chr4_4:45432603-45432622 | Msa0683070:intron | 30.0% |
| ATAGCTAAAATGACTGAAGA+AGG | + | chr4_4:45432754-45432773 | Msa0683070:CDS | 30.0% | |
| !! | TATGTTTTTAACGAGAATGG+CGG | - | chr4_4:45432793-45432812 | None:intergenic | 30.0% |
| !! | CAGTATGTTTTTAACGAGAA+TGG | - | chr4_4:45432796-45432815 | None:intergenic | 30.0% |
| CATTCTCGTTAAAAACATAC+TGG | + | chr4_4:45432794-45432813 | Msa0683070:CDS | 30.0% | |
| !!! | TTTTGCTGATTCTTGAATGA+TGG | + | chr4_4:45433071-45433090 | Msa0683070:three_prime_UTR | 30.0% |
| AAGAGATGAGAAAAGGAAAA+TGG | - | chr4_4:45433106-45433125 | None:intergenic | 30.0% | |
| TGCAATTAAGAGATGAGAAA+AGG | - | chr4_4:45433113-45433132 | None:intergenic | 30.0% | |
| TAATTGCAATGACATCAGTA+AGG | + | chr4_4:45433125-45433144 | Msa0683070:three_prime_UTR | 30.0% | |
| GCTTCAAAGAACTAATGAGA+AGG | - | chr4_4:45428604-45428623 | None:intergenic | 35.0% | |
| TCCTTCGACAAATCAAACAA+TGG | + | chr4_4:45428627-45428646 | Msa0683070:exon | 35.0% | |
| !! | TCCATTGTTTGATTTGTCGA+AGG | - | chr4_4:45428631-45428650 | None:intergenic | 35.0% |
| ATTTACTAGAGAGAGAGAGA+GGG | - | chr4_4:45428692-45428711 | None:intergenic | 35.0% | |
| AATTTACTAGAGAGAGAGAG+AGG | - | chr4_4:45428693-45428712 | None:intergenic | 35.0% | |
| TTTAGGTATCCTTATGTGAC+TGG | + | chr4_4:45428839-45428858 | Msa0683070:intron | 35.0% | |
| GTATTTAATAGCAACCACAG+AGG | - | chr4_4:45428867-45428886 | None:intergenic | 35.0% | |
| ATACAAAGATGGGATTCTCA+TGG | + | chr4_4:45428883-45428902 | Msa0683070:CDS | 35.0% | |
| ATTCTCATGGCTTCTGATAT+GGG | + | chr4_4:45428896-45428915 | Msa0683070:CDS | 35.0% | |
| CAACAATAAGCCAATCCAAA+CGG | + | chr4_4:45429131-45429150 | Msa0683070:intron | 35.0% | |
| AACAATAAGCCAATCCAAAC+GGG | + | chr4_4:45429132-45429151 | Msa0683070:intron | 35.0% | |
| CTAAAACTCATTAACCGCAA+AGG | - | chr4_4:45429264-45429283 | None:intergenic | 35.0% | |
| AGCATCTGAGTTCAATATCT+GGG | + | chr4_4:45429304-45429323 | Msa0683070:intron | 35.0% | |
| TTTAGTTGAGGTCAGTTTGA+TGG | + | chr4_4:45429426-45429445 | Msa0683070:intron | 35.0% | |
| GAGAATCTGAGTTTGATATC+TGG | + | chr4_4:45429450-45429469 | Msa0683070:intron | 35.0% | |
| AAAAAAGGTCCCTAGTAATC+CGG | - | chr4_4:45429519-45429538 | None:intergenic | 35.0% | |
| CTTAATACTCTGATTCCTAG+GGG | - | chr4_4:45429542-45429561 | None:intergenic | 35.0% | |
| GTCTTAATACTCTGATTCCT+AGG | - | chr4_4:45429544-45429563 | None:intergenic | 35.0% | |
| CTTGGTAAATTGTGATTCCT+TGG | + | chr4_4:45429697-45429716 | Msa0683070:intron | 35.0% | |
| ! | AAATCAGCCCAATATTTTCC+GGG | - | chr4_4:45429810-45429829 | None:intergenic | 35.0% |
| ATAAGGGAATGTTTCCCAAT+AGG | - | chr4_4:45429920-45429939 | None:intergenic | 35.0% | |
| ATTGGGAAACATTCCCTTAT+TGG | + | chr4_4:45429920-45429939 | Msa0683070:CDS | 35.0% | |
| AGGTGCACAACTATTTAACT+CGG | + | chr4_4:45430238-45430257 | Msa0683070:CDS | 35.0% | |
| TAACTCGGGTGATGTATAAT+AGG | + | chr4_4:45430253-45430272 | Msa0683070:CDS | 35.0% | |
| GAAGTATATTGCAATTGCGT+AGG | + | chr4_4:45431185-45431204 | Msa0683070:intron | 35.0% | |
| !! | ATAAAGAAAAGGTGCCATGT+GGG | - | chr4_4:45431259-45431278 | None:intergenic | 35.0% |
| !! | AATAAAGAAAAGGTGCCATG+TGG | - | chr4_4:45431260-45431279 | None:intergenic | 35.0% |
| ! | CATGGCACCTTTTCTTTATT+TGG | + | chr4_4:45431260-45431279 | Msa0683070:intron | 35.0% |
| ! | TATTTGGGATTGAATCCTTC+TGG | + | chr4_4:45431276-45431295 | Msa0683070:intron | 35.0% |
| ! | ATTTGGGATTGAATCCTTCT+GGG | + | chr4_4:45431277-45431296 | Msa0683070:intron | 35.0% |
| ! | GTTAAGCAAATATTTGAGGC+TGG | + | chr4_4:45431391-45431410 | Msa0683070:intron | 35.0% |
| AAATTATTCTACCCGTGCAA+AGG | - | chr4_4:45431470-45431489 | None:intergenic | 35.0% | |
| GGATTCTATACTGTGTTATG+TGG | - | chr4_4:45431511-45431530 | None:intergenic | 35.0% | |
| AGCAAAACACTATCACAAAC+CGG | - | chr4_4:45431623-45431642 | None:intergenic | 35.0% | |
| !! | AGCTTTAAAGTTCCATGACT+AGG | - | chr4_4:45431728-45431747 | None:intergenic | 35.0% |
| !! | CATGGAACTTTAAAGCTCTA+AGG | + | chr4_4:45431731-45431750 | Msa0683070:intron | 35.0% |
| !! | AAAGCTCTAAGGGTTATAGT+AGG | + | chr4_4:45431742-45431761 | Msa0683070:intron | 35.0% |
| AAAACTAACTGGAAGATGAG+AGG | + | chr4_4:45431773-45431792 | Msa0683070:intron | 35.0% | |
| AAACTAACTGGAAGATGAGA+GGG | + | chr4_4:45431774-45431793 | Msa0683070:intron | 35.0% | |
| ! | TTTTACTGCATTGGACCATT+AGG | + | chr4_4:45431892-45431911 | Msa0683070:intron | 35.0% |
| ATGTAGGCTTTCAAGGAATT+AGG | + | chr4_4:45431919-45431938 | Msa0683070:intron | 35.0% | |
| AAAGATTCACCTTATCCTCA+AGG | - | chr4_4:45432019-45432038 | None:intergenic | 35.0% | |
| ! | GAGGATAAGGTGAATCTTTT+TGG | + | chr4_4:45432020-45432039 | Msa0683070:intron | 35.0% |
| ! | GGATAAGGTGAATCTTTTTG+GGG | + | chr4_4:45432022-45432041 | Msa0683070:intron | 35.0% |
| ! | GATAAGGTGAATCTTTTTGG+GGG | + | chr4_4:45432023-45432042 | Msa0683070:intron | 35.0% |
| ATATAACAGAATGGGACACA+TGG | + | chr4_4:45432118-45432137 | Msa0683070:intron | 35.0% | |
| GAGAGTGGTGAGAATTTATT+TGG | + | chr4_4:45432147-45432166 | Msa0683070:intron | 35.0% | |
| TGAGAATTTATTTGGCAGTG+AGG | + | chr4_4:45432155-45432174 | Msa0683070:intron | 35.0% | |
| GAGAATTTATTTGGCAGTGA+GGG | + | chr4_4:45432156-45432175 | Msa0683070:intron | 35.0% | |
| ! | GGAATTATAAGGGTGTGTAA+CGG | + | chr4_4:45432177-45432196 | Msa0683070:intron | 35.0% |
| CAAGATCAAGAGAGAAGATA+AGG | + | chr4_4:45432215-45432234 | Msa0683070:intron | 35.0% | |
| AGAGAGCAAAAGAAACCTAA+AGG | - | chr4_4:45432363-45432382 | None:intergenic | 35.0% | |
| !! | GCTATTTCTCATCTTCTGAT+AGG | - | chr4_4:45432511-45432530 | None:intergenic | 35.0% |
| !! | ATGTTTTTAACGAGAATGGC+GGG | - | chr4_4:45432792-45432811 | None:intergenic | 35.0% |
| AGTGGTGTACTGCAAACAAA+AGG | - | chr4_4:45428561-45428580 | None:intergenic | 40.0% | |
| TTTACTAGAGAGAGAGAGAG+GGG | - | chr4_4:45428691-45428710 | None:intergenic | 40.0% | |
| GATTCTCATGGCTTCTGATA+TGG | + | chr4_4:45428895-45428914 | Msa0683070:CDS | 40.0% | |
| GAGCATCTGAGTTCAATATC+TGG | + | chr4_4:45429303-45429322 | Msa0683070:intron | 40.0% | |
| ATCTGAGTTCAATATCTGGG+TGG | + | chr4_4:45429307-45429326 | Msa0683070:intron | 40.0% | |
| ATCTGAGTTTGATATCTGGC+TGG | + | chr4_4:45429454-45429473 | Msa0683070:intron | 40.0% | |
| GATATCTGGCTGGAAATTCT+TGG | + | chr4_4:45429464-45429483 | Msa0683070:intron | 40.0% | |
| TCTGATTCCTAGGGGAAAAA+AGG | - | chr4_4:45429534-45429553 | None:intergenic | 40.0% | |
| TACTAAAACCAGCACTTCCA+AGG | - | chr4_4:45429717-45429736 | None:intergenic | 40.0% | |
| ! | CAATATTTTCCGGGAGAATG+GGG | - | chr4_4:45429801-45429820 | None:intergenic | 40.0% |
| ! | CCAATATTTTCCGGGAGAAT+GGG | - | chr4_4:45429802-45429821 | None:intergenic | 40.0% |
| CCATTCTCCCGGAAAATATT+GGG | + | chr4_4:45429800-45429819 | Msa0683070:intron | 40.0% | |
| TGAAATAACTGAGTTGCGGA+CGG | - | chr4_4:45430113-45430132 | None:intergenic | 40.0% | |
| TAGCCTCAATGACAACATGT+GGG | + | chr4_4:45430188-45430207 | Msa0683070:intron | 40.0% | |
| AATGACAACATGTGGGATGA+CGG | + | chr4_4:45430195-45430214 | Msa0683070:CDS | 40.0% | |
| AAATAGTTGTGCACCTCCTT+AGG | - | chr4_4:45430234-45430253 | None:intergenic | 40.0% | |
| GGTGCACAACTATTTAACTC+GGG | + | chr4_4:45430239-45430258 | Msa0683070:CDS | 40.0% | |
| GTAACAAGTTCAACCCTTTG+TGG | + | chr4_4:45430277-45430296 | Msa0683070:CDS | 40.0% | |
| !! | TACTTGGTGGTGTGAAGAAT+GGG | + | chr4_4:45430310-45430329 | Msa0683070:CDS | 40.0% |
| !! | AAGAATGGGCAAAAGTACCT+CGG | + | chr4_4:45430324-45430343 | Msa0683070:CDS | 40.0% |
| AAGATGACCACATAGCTACT+GGG | + | chr4_4:45430462-45430481 | Msa0683070:CDS | 40.0% | |
| !! | TAAGCTTTGAGGAAGGTGTT+AGG | + | chr4_4:45430537-45430556 | Msa0683070:CDS | 40.0% |
| ! | GTGTGCTTTTATATCGCGAT+AGG | + | chr4_4:45430579-45430598 | Msa0683070:CDS | 40.0% |
| ! | TGTAAGGGAGCATAATCCTA+TGG | + | chr4_4:45430719-45430738 | Msa0683070:intron | 40.0% |
| TGTGACAACCAACTCAGAAA+GGG | - | chr4_4:45430918-45430937 | None:intergenic | 40.0% | |
| GGGATTAGAAAAATCCCAGA+AGG | - | chr4_4:45431294-45431313 | None:intergenic | 40.0% | |
| ! | GGATTTTTCTAATCCCCACT+TGG | + | chr4_4:45431298-45431317 | Msa0683070:intron | 40.0% |
| ! | TCCATCTTTTTGTGCCAAGT+GGG | - | chr4_4:45431315-45431334 | None:intergenic | 40.0% |
| !! | AGATGGAGGATTTTTGAGGA+TGG | + | chr4_4:45431328-45431347 | Msa0683070:intron | 40.0% |
| ATGCTTTCCTTTCCTTTGCA+CGG | + | chr4_4:45431455-45431474 | Msa0683070:intron | 40.0% | |
| CCTTGAATCCTTGTACAGTA+AGG | - | chr4_4:45431532-45431551 | None:intergenic | 40.0% | |
| CCTTACTGTACAAGGATTCA+AGG | + | chr4_4:45431529-45431548 | Msa0683070:intron | 40.0% | |
| TTTACCTTAGAACCCTGTAC+TGG | + | chr4_4:45431553-45431572 | Msa0683070:intron | 40.0% | |
| ! | AGTGTTTTGCTTCCTTTCAG+TGG | + | chr4_4:45431632-45431651 | Msa0683070:intron | 40.0% |
| ! | ACTGGCTTATTACCTAGTCA+TGG | + | chr4_4:45431713-45431732 | Msa0683070:intron | 40.0% |
| ! | ATTTTAAATCCACTCCGGAC+TGG | + | chr4_4:45431802-45431821 | Msa0683070:intron | 40.0% |
| ! | TTTTAAATCCACTCCGGACT+GGG | + | chr4_4:45431803-45431822 | Msa0683070:intron | 40.0% |
| ACGTTAGTGGCAACCAAAAT+TGG | - | chr4_4:45431835-45431854 | None:intergenic | 40.0% | |
| ! | GCTCGATACTTTTACTGCAT+TGG | + | chr4_4:45431883-45431902 | Msa0683070:intron | 40.0% |
| AAAGCCTACATGACACCTAA+TGG | - | chr4_4:45431910-45431929 | None:intergenic | 40.0% | |
| TAACCATCACCTTGAGGATA+AGG | + | chr4_4:45432007-45432026 | Msa0683070:intron | 40.0% | |
| ! | GGTTGTTAAGAGTGTAGGAT+GGG | + | chr4_4:45432063-45432082 | Msa0683070:intron | 40.0% |
| AAATTCTCACCACTCTCCTA+AGG | - | chr4_4:45432144-45432163 | None:intergenic | 40.0% | |
| TTGGCAGTGAGGGAATTATA+AGG | + | chr4_4:45432166-45432185 | Msa0683070:intron | 40.0% | |
| TGGCAGTGAGGGAATTATAA+GGG | + | chr4_4:45432167-45432186 | Msa0683070:intron | 40.0% | |
| AAAGACAGAGATGGAGAAAG+TGG | + | chr4_4:45432261-45432280 | Msa0683070:intron | 40.0% | |
| ATCCAGATTCGAGGGATATT+GGG | + | chr4_4:45432297-45432316 | Msa0683070:intron | 40.0% | |
| !! | GCTAGCAGGTTTTATCCTTT+AGG | + | chr4_4:45432345-45432364 | Msa0683070:intron | 40.0% |
| ! | GTATTTTCCTCACTCTGTTC+TGG | + | chr4_4:45432483-45432502 | Msa0683070:intron | 40.0% |
| TTCTGTTGGTACAATCTTGG+CGG | + | chr4_4:45432606-45432625 | Msa0683070:intron | 40.0% | |
| ! | TTTGAGGTACGAGATCGAAG+TGG | - | chr4_4:45428579-45428598 | None:intergenic | 45.0% |
| GGTTCTCTGTGATTCAGCTA+CGG | - | chr4_4:45428656-45428675 | None:intergenic | 45.0% | |
| TTACTAGAGAGAGAGAGAGG+GGG | - | chr4_4:45428690-45428709 | None:intergenic | 45.0% | |
| ACAGAGGATCCAGTCACATA+AGG | - | chr4_4:45428851-45428870 | None:intergenic | 45.0% | |
| TTATGTGACTGGATCCTCTG+TGG | + | chr4_4:45428850-45428869 | Msa0683070:CDS | 45.0% | |
| AAACCTTACTTTGGGCCGTT+TGG | + | chr4_4:45428948-45428967 | Msa0683070:intron | 45.0% | |
| AATCCAAACGGCCCAAAGTA+AGG | - | chr4_4:45428954-45428973 | None:intergenic | 45.0% | |
| ATGAAGTGGGTGAACCTTTG+CGG | + | chr4_4:45429247-45429266 | Msa0683070:intron | 45.0% | |
| TCGAGAGCAAGTTCAATGTC+TGG | - | chr4_4:45429347-45429366 | None:intergenic | 45.0% | |
| ! | ATGAAGTGCTTGAGCCTTAG+TGG | + | chr4_4:45429394-45429413 | Msa0683070:intron | 45.0% |
| GTTATCTCTCTGCTGAACTC+CGG | + | chr4_4:45429497-45429516 | Msa0683070:intron | 45.0% | |
| TGCTGAACTCCGGATTACTA+GGG | + | chr4_4:45429507-45429526 | Msa0683070:intron | 45.0% | |
| ! | TTGTGATTCCTTGGAAGTGC+TGG | + | chr4_4:45429706-45429725 | Msa0683070:intron | 45.0% |
| AAGTTGAAACCCCATTCTCC+CGG | + | chr4_4:45429789-45429808 | Msa0683070:intron | 45.0% | |
| CCCATTCTCCCGGAAAATAT+TGG | + | chr4_4:45429799-45429818 | Msa0683070:intron | 45.0% | |
| ! | CCCAATATTTTCCGGGAGAA+TGG | - | chr4_4:45429803-45429822 | None:intergenic | 45.0% |
| ACACTCTTGTATCGCAGAGT+AGG | - | chr4_4:45429884-45429903 | None:intergenic | 45.0% | |
| !! | TGCGATACAAGAGTGTTGAG+CGG | + | chr4_4:45429888-45429907 | Msa0683070:CDS | 45.0% |
| TTCTCCACTGGCACCAATAA+GGG | - | chr4_4:45429936-45429955 | None:intergenic | 45.0% | |
| TTTCTCCACTGGCACCAATA+AGG | - | chr4_4:45429937-45429956 | None:intergenic | 45.0% | |
| AGACTTACATAAGCTCGTCG+AGG | - | chr4_4:45429988-45430007 | None:intergenic | 45.0% | |
| GTAGCCTCAATGACAACATG+TGG | + | chr4_4:45430187-45430206 | Msa0683070:intron | 45.0% | |
| CATCCCACATGTTGTCATTG+AGG | - | chr4_4:45430194-45430213 | None:intergenic | 45.0% | |
| ATGACAACATGTGGGATGAC+GGG | + | chr4_4:45430196-45430215 | Msa0683070:CDS | 45.0% | |
| !! | GAATTCTCTAGGACCTAAGG+AGG | + | chr4_4:45430218-45430237 | Msa0683070:CDS | 45.0% |
| GTACAAGGGAGTTCCACAAA+GGG | - | chr4_4:45430293-45430312 | None:intergenic | 45.0% | |
| AGTACAAGGGAGTTCCACAA+AGG | - | chr4_4:45430294-45430313 | None:intergenic | 45.0% | |
| TTGTGGAACTCCCTTGTACT+TGG | + | chr4_4:45430294-45430313 | Msa0683070:CDS | 45.0% | |
| CTTCACACCACCAAGTACAA+GGG | - | chr4_4:45430307-45430326 | None:intergenic | 45.0% | |
| TCTTCACACCACCAAGTACA+AGG | - | chr4_4:45430308-45430327 | None:intergenic | 45.0% | |
| !! | GTACTTGGTGGTGTGAAGAA+TGG | + | chr4_4:45430309-45430328 | Msa0683070:CDS | 45.0% |
| GAAGATGACCACATAGCTAC+TGG | + | chr4_4:45430461-45430480 | Msa0683070:CDS | 45.0% | |
| GGCTAGGAAATCATCTTGCT+AGG | + | chr4_4:45430483-45430502 | Msa0683070:CDS | 45.0% | |
| TGCCACTCATCACGAAGAAT+CGG | - | chr4_4:45430509-45430528 | None:intergenic | 45.0% | |
| !! | TGAGGAAGGTGTTAGGTTAC+TGG | + | chr4_4:45430544-45430563 | Msa0683070:CDS | 45.0% |
| GTCTGCTGTCAACAAGATAC+AGG | + | chr4_4:45430601-45430620 | Msa0683070:CDS | 45.0% | |
| ! | AAGGGAGCATAATCCTATGG+AGG | + | chr4_4:45430722-45430741 | Msa0683070:intron | 45.0% |
| CTGTGACAACCAACTCAGAA+AGG | - | chr4_4:45430919-45430938 | None:intergenic | 45.0% | |
| GCAGTTTAACTAGTGAGGAC+TGG | + | chr4_4:45431223-45431242 | Msa0683070:intron | 45.0% | |
| ! | CCATCTTTTTGTGCCAAGTG+GGG | - | chr4_4:45431314-45431333 | None:intergenic | 45.0% |
| ! | CTCCATCTTTTTGTGCCAAG+TGG | - | chr4_4:45431316-45431335 | None:intergenic | 45.0% |
| CACTTGGCACAAAAAGATGG+AGG | + | chr4_4:45431314-45431333 | Msa0683070:intron | 45.0% | |
| TGCTTTCCTTTCCTTTGCAC+GGG | + | chr4_4:45431456-45431475 | Msa0683070:intron | 45.0% | |
| ATTCTACCCGTGCAAAGGAA+AGG | - | chr4_4:45431465-45431484 | None:intergenic | 45.0% | |
| CCTTTGTTCACTCCAGTACA+GGG | - | chr4_4:45431568-45431587 | None:intergenic | 45.0% | |
| TCCTTTGTTCACTCCAGTAC+AGG | - | chr4_4:45431569-45431588 | None:intergenic | 45.0% | |
| TTCCTTTCAGTGGATGCTTG+TGG | + | chr4_4:45431642-45431661 | Msa0683070:intron | 45.0% | |
| TTCCACAAGCATCCACTGAA+AGG | - | chr4_4:45431647-45431666 | None:intergenic | 45.0% | |
| AACTGGAAGATGAGAGGGAT+TGG | + | chr4_4:45431779-45431798 | Msa0683070:intron | 45.0% | |
| AAATTGGAGACTTCCCAGTC+CGG | - | chr4_4:45431819-45431838 | None:intergenic | 45.0% | |
| ! | GACTGGGAAGTCTCCAATTT+TGG | + | chr4_4:45431819-45431838 | Msa0683070:intron | 45.0% |
| ACTACGAGCAGTAACGTTAG+TGG | - | chr4_4:45431848-45431867 | None:intergenic | 45.0% | |
| ! | TGGACCATTAGGTGTCATGT+AGG | + | chr4_4:45431903-45431922 | Msa0683070:intron | 45.0% |
| ! | AGGTGTCATGTAGGCTTTCA+AGG | + | chr4_4:45431912-45431931 | Msa0683070:intron | 45.0% |
| AACCATGAGGCTTCATGCTA+CGG | + | chr4_4:45431947-45431966 | Msa0683070:intron | 45.0% | |
| ACAGCCATTAAACTCCCATC+GGG | - | chr4_4:45431975-45431994 | None:intergenic | 45.0% | |
| GACAGCCATTAAACTCCCAT+CGG | - | chr4_4:45431976-45431995 | None:intergenic | 45.0% | |
| TCACCTTATCCTCAAGGTGA+TGG | - | chr4_4:45432013-45432032 | None:intergenic | 45.0% | |
| !! | GGGGAGTATTGTTAGACTCA+CGG | + | chr4_4:45432042-45432061 | Msa0683070:intron | 45.0% |
| ! | CTCACGGTTGTTAAGAGTGT+AGG | + | chr4_4:45432058-45432077 | Msa0683070:intron | 45.0% |
| ! | CGGTTGTTAAGAGTGTAGGA+TGG | + | chr4_4:45432062-45432081 | Msa0683070:intron | 45.0% |
| !! | ATAAGGGTGTGTAACGGACT+TGG | + | chr4_4:45432183-45432202 | Msa0683070:intron | 45.0% |
| !! | TGTAACGGACTTGGATAGGA+AGG | + | chr4_4:45432192-45432211 | Msa0683070:intron | 45.0% |
| ACAGAGATGGAGAAAGTGGA+TGG | + | chr4_4:45432265-45432284 | Msa0683070:intron | 45.0% | |
| AGATGGAGAAAGTGGATGGA+AGG | + | chr4_4:45432269-45432288 | Msa0683070:intron | 45.0% | |
| GATCCAGATTCGAGGGATAT+TGG | + | chr4_4:45432296-45432315 | Msa0683070:intron | 45.0% | |
| AGATTCGAGGGATATTGGGT+GGG | + | chr4_4:45432301-45432320 | Msa0683070:intron | 45.0% | |
| GAAAGTCTGGTAAGGAACAC+AGG | + | chr4_4:45432323-45432342 | Msa0683070:intron | 45.0% | |
| ATAGGAACCAGAACAGAGTG+AGG | - | chr4_4:45432493-45432512 | None:intergenic | 45.0% | |
| GCTTTCAAGAATCCCACAGT+TGG | + | chr4_4:45432826-45432845 | Msa0683070:CDS | 45.0% | |
| TACTAGAGAGAGAGAGAGGG+GGG | - | chr4_4:45428689-45428708 | None:intergenic | 50.0% | |
| CTCATGGCTTCTGATATGGG+AGG | + | chr4_4:45428899-45428918 | Msa0683070:CDS | 50.0% | |
| AAATGTGCAAAGGGCCCGTT+TGG | - | chr4_4:45429149-45429168 | None:intergenic | 50.0% | |
| CTGCTGAACTCCGGATTACT+AGG | + | chr4_4:45429506-45429525 | Msa0683070:intron | 50.0% | |
| !!! | CTAGGGACCTTTTTTCCCCT+AGG | + | chr4_4:45429524-45429543 | Msa0683070:intron | 50.0% |
| !! | GCGATACAAGAGTGTTGAGC+GGG | + | chr4_4:45429889-45429908 | Msa0683070:CDS | 50.0% |
| TTGAGCGGGTGAAGCCTATT+GGG | + | chr4_4:45429903-45429922 | Msa0683070:CDS | 50.0% | |
| !! | CATTCCCTTATTGGTGCCAG+TGG | + | chr4_4:45429929-45429948 | Msa0683070:CDS | 50.0% |
| TAAGCTCGTCGAGGTAACGT+TGG | - | chr4_4:45429979-45429998 | None:intergenic | 50.0% | |
| !! | TGGGATGACGGGAATTCTCT+AGG | + | chr4_4:45430207-45430226 | Msa0683070:CDS | 50.0% |
| !! | CGGGAATTCTCTAGGACCTA+AGG | + | chr4_4:45430215-45430234 | Msa0683070:CDS | 50.0% |
| TGGAACTCCCTTGTACTTGG+TGG | + | chr4_4:45430297-45430316 | Msa0683070:CDS | 50.0% | |
| TTCCTAGCCCAGTAGCTATG+TGG | - | chr4_4:45430472-45430491 | None:intergenic | 50.0% | |
| CCATCTTACTCACCCCAACT+CGG | + | chr4_4:45430647-45430666 | Msa0683070:intron | 50.0% | |
| CATCTTACTCACCCCAACTC+GGG | + | chr4_4:45430648-45430667 | Msa0683070:intron | 50.0% | |
| GCACATCTCCCTTTCTGAGT+TGG | + | chr4_4:45430907-45430926 | Msa0683070:intron | 50.0% | |
| CCCCACTTGGCACAAAAAGA+TGG | + | chr4_4:45431311-45431330 | Msa0683070:intron | 50.0% | |
| CACTCCAGTACAGGGTTCTA+AGG | - | chr4_4:45431560-45431579 | None:intergenic | 50.0% | |
| CCCTGTACTGGAGTGAACAA+AGG | + | chr4_4:45431565-45431584 | Msa0683070:intron | 50.0% | |
| CAGCCATTAAACTCCCATCG+GGG | - | chr4_4:45431974-45431993 | None:intergenic | 50.0% | |
| ! | GGTGATGGTTAAGCGACACT+GGG | - | chr4_4:45431998-45432017 | None:intergenic | 50.0% |
| ! | AGGTGATGGTTAAGCGACAC+TGG | - | chr4_4:45431999-45432018 | None:intergenic | 50.0% |
| GTCGCTTAACCATCACCTTG+AGG | + | chr4_4:45432001-45432020 | Msa0683070:intron | 50.0% | |
| AGAATGGGACACATGGCCTT+AGG | + | chr4_4:45432125-45432144 | Msa0683070:intron | 50.0% | |
| !! | GGTGTGTAACGGACTTGGAT+AGG | + | chr4_4:45432188-45432207 | Msa0683070:intron | 50.0% |
| GAGAAAGTGGATGGAAGGAG+AGG | + | chr4_4:45432274-45432293 | Msa0683070:intron | 50.0% | |
| AAGGAGAGGATCCAGATTCG+AGG | + | chr4_4:45432288-45432307 | Msa0683070:intron | 50.0% | |
| AGGAGAGGATCCAGATTCGA+GGG | + | chr4_4:45432289-45432308 | Msa0683070:intron | 50.0% | |
| CACCCAATATCCCTCGAATC+TGG | - | chr4_4:45432302-45432321 | None:intergenic | 50.0% | |
| CAGATTCGAGGGATATTGGG+TGG | + | chr4_4:45432300-45432319 | Msa0683070:intron | 50.0% | |
| GGATATTGGGTGGGAAAGTC+TGG | + | chr4_4:45432310-45432329 | Msa0683070:intron | 50.0% | |
| TTGGGTGGGAAAGTCTGGTA+AGG | + | chr4_4:45432315-45432334 | Msa0683070:intron | 50.0% | |
| !! | AATCCCACAGTTGGTGCTGA+AGG | + | chr4_4:45432835-45432854 | Msa0683070:CDS | 50.0% |
| GAACCTTCAGCACCAACTGT+GGG | - | chr4_4:45432841-45432860 | None:intergenic | 50.0% | |
| ACTAGAGAGAGAGAGAGGGG+GGG | - | chr4_4:45428688-45428707 | None:intergenic | 55.0% | |
| TGCAAAGGGCCCGTTTGGAT+TGG | - | chr4_4:45429144-45429163 | None:intergenic | 55.0% | |
| GTATCGCAGAGTAGGCCCAT+AGG | - | chr4_4:45429876-45429895 | None:intergenic | 55.0% | |
| GTTGAGCGGGTGAAGCCTAT+TGG | + | chr4_4:45429902-45429921 | Msa0683070:CDS | 55.0% | |
| !! | TGGGCAAAAGTACCTCGGCA+CGG | + | chr4_4:45430329-45430348 | Msa0683070:CDS | 55.0% |
| !! | CAAAAGTACCTCGGCACGGT+AGG | + | chr4_4:45430333-45430352 | Msa0683070:intron | 55.0% |
| GACCACATAGCTACTGGGCT+AGG | + | chr4_4:45430467-45430486 | Msa0683070:CDS | 55.0% | |
| ! | GGCCGATTCTTCGTGATGAG+TGG | + | chr4_4:45430504-45430523 | Msa0683070:CDS | 55.0% |
| ! | CCGAGTTGGGGTGAGTAAGA+TGG | - | chr4_4:45430650-45430669 | None:intergenic | 55.0% |
| CAATTGAGGGACCCGAGTTG+GGG | - | chr4_4:45430662-45430681 | None:intergenic | 55.0% | |
| GCAATTGAGGGACCCGAGTT+GGG | - | chr4_4:45430663-45430682 | None:intergenic | 55.0% | |
| TGCAATTGAGGGACCCGAGT+TGG | - | chr4_4:45430664-45430683 | None:intergenic | 55.0% | |
| CTGGTAAGCAGTAGCCCACA+TGG | + | chr4_4:45431242-45431261 | Msa0683070:intron | 55.0% | |
| GTCCGTAGCATGAAGCCTCA+TGG | - | chr4_4:45431952-45431971 | None:intergenic | 55.0% | |
| TTCATGCTACGGACCCCGAT+GGG | + | chr4_4:45431958-45431977 | Msa0683070:intron | 55.0% | |
| GGACCCCGATGGGAGTTTAA+TGG | + | chr4_4:45431968-45431987 | Msa0683070:intron | 55.0% | |
| ! | GACACATGGCCTTAGGAGAG+TGG | + | chr4_4:45432132-45432151 | Msa0683070:intron | 55.0% |
| GGTAAGGAACACAGGCTAGC+AGG | + | chr4_4:45432331-45432350 | Msa0683070:intron | 55.0% | |
| CGAACCTTCAGCACCAACTG+TGG | - | chr4_4:45432842-45432861 | None:intergenic | 55.0% | |
| !! | CAGTTGGTGCTGAAGGTTCG+TGG | + | chr4_4:45432842-45432861 | Msa0683070:CDS | 55.0% |
| CTAGAGAGAGAGAGAGGGGG+GGG | - | chr4_4:45428687-45428706 | None:intergenic | 60.0% | |
| CTTCATGCTACGGACCCCGA+TGG | + | chr4_4:45431957-45431976 | Msa0683070:intron | 60.0% | |
| AGAGAGGGGGGGGACGTACA+AGG | - | chr4_4:45428677-45428696 | None:intergenic | 65.0% | |
| TACCTCGGCACGGTAGGCCT+TGG | + | chr4_4:45430339-45430358 | Msa0683070:intron | 65.0% | |
| GGAGACTTCCCAGTCCGGAG+TGG | - | chr4_4:45431814-45431833 | None:intergenic | 65.0% | |
| AGCCAAGGCCTACCGTGCCG+AGG | - | chr4_4:45430344-45430363 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 45428550 | 45433156 | 45428550 | ID=Msa0683070;Name=Msa0683070 |
| chr4_4 | mRNA | 45428550 | 45433156 | 45428550 | ID=Msa0683070-mRNA-1;Parent=Msa0683070;Name=Msa0683070-mRNA-1;_AED=0.06;_eAED=0.06;_QI=96|1|1|1|1|1|6|289|232 |
| chr4_4 | exon | 45428550 | 45428677 | 45428550 | ID=Msa0683070-mRNA-1:exon:10991;Parent=Msa0683070-mRNA-1 |
| chr4_4 | exon | 45428844 | 45428920 | 45428844 | ID=Msa0683070-mRNA-1:exon:10992;Parent=Msa0683070-mRNA-1 |
| chr4_4 | exon | 45429870 | 45429999 | 45429870 | ID=Msa0683070-mRNA-1:exon:10993;Parent=Msa0683070-mRNA-1 |
| chr4_4 | exon | 45430191 | 45430350 | 45430191 | ID=Msa0683070-mRNA-1:exon:10994;Parent=Msa0683070-mRNA-1 |
| chr4_4 | exon | 45430437 | 45430622 | 45430437 | ID=Msa0683070-mRNA-1:exon:10995;Parent=Msa0683070-mRNA-1 |
| chr4_4 | exon | 45432754 | 45433156 | 45432754 | ID=Msa0683070-mRNA-1:exon:10996;Parent=Msa0683070-mRNA-1 |
| chr4_4 | five_prime_UTR | 45428550 | 45428645 | 45428550 | ID=Msa0683070-mRNA-1:five_prime_utr;Parent=Msa0683070-mRNA-1 |
| chr4_4 | CDS | 45428646 | 45428677 | 45428646 | ID=Msa0683070-mRNA-1:cds;Parent=Msa0683070-mRNA-1 |
| chr4_4 | CDS | 45428844 | 45428920 | 45428844 | ID=Msa0683070-mRNA-1:cds;Parent=Msa0683070-mRNA-1 |
| chr4_4 | CDS | 45429870 | 45429999 | 45429870 | ID=Msa0683070-mRNA-1:cds;Parent=Msa0683070-mRNA-1 |
| chr4_4 | CDS | 45430191 | 45430350 | 45430191 | ID=Msa0683070-mRNA-1:cds;Parent=Msa0683070-mRNA-1 |
| chr4_4 | CDS | 45430437 | 45430622 | 45430437 | ID=Msa0683070-mRNA-1:cds;Parent=Msa0683070-mRNA-1 |
| chr4_4 | CDS | 45432754 | 45432867 | 45432754 | ID=Msa0683070-mRNA-1:cds;Parent=Msa0683070-mRNA-1 |
| chr4_4 | three_prime_UTR | 45432868 | 45433156 | 45432868 | ID=Msa0683070-mRNA-1:three_prime_utr;Parent=Msa0683070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
