AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0288080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0288080 MtrunA17_Chr2g0305121 98.805 251 3 0 1 251 1 251 0.0 499
Msa0288080 MtrunA17_Chr4g0008681 93.625 251 16 0 1 251 1 251 3.32e-150 419
Msa0288080 MtrunA17_Chr5g0441161 58.009 231 89 3 1 231 1 223 9.71e-81 241
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0288080 AT2G18110.1 80.531 226 43 1 7 231 6 231 2.27e-111 320
Msa0288080 AT1G30230.2 79.476 229 46 1 7 234 6 234 2.43e-109 316
Msa0288080 AT1G30230.1 79.646 226 45 1 7 231 6 231 1.96e-107 310
Msa0288080 AT5G12110.1 60.000 235 83 3 1 231 1 228 7.18e-79 237
Msa0288080 AT5G19510.1 58.009 231 90 2 1 231 1 224 3.48e-72 220

Find 77 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTGACTATAGTGGTGTTTC+TGG 0.119961 2_3:+31873987 Msa0288080:intron
TTCAGTTGGAAGGGTTGTTT+TGG 0.210487 2_3:+31874391 Msa0288080:CDS
TCAGTTCCATCATATGAATA+TGG 0.245099 2_3:+31873790 Msa0288080:CDS
AAGTGAGAGTGAATTGAAAA+AGG 0.250665 2_3:-31873109 None:intergenic
TTGTGACTTTATCCATTATC+TGG 0.271413 2_3:+31875426 Msa0288080:three_prime_UTR
ATTCAAACTTTGAGAATTGT+AGG 0.284934 2_3:+31875463 Msa0288080:three_prime_UTR
TCTTGTTTCCGTTGACAATA+TGG 0.314177 2_3:+31875082 Msa0288080:CDS
CATGTGACATTAAAATTTCA+TGG 0.324335 2_3:+31875537 Msa0288080:three_prime_UTR
GCAGCCTTTGTGTCAGAAAC+TGG 0.339173 2_3:-31874071 None:intergenic
TTATAACACAATCCAGATAA+TGG 0.361755 2_3:-31875438 None:intergenic
GCATTCCCAGGGTTTGTTAG+AGG 0.367749 2_3:-31875565 None:intergenic
GCAGCAGCCGTGAAGGCATC+TGG 0.384826 2_3:+31874176 Msa0288080:CDS
GAAGAAGGCAGCTGAGGAAC+GGG 0.395604 2_3:+31874154 Msa0288080:CDS
TATAACCTTAAGGCTGAATC+TGG 0.399774 2_3:+31873567 Msa0288080:CDS
GATGACGATGTTGATTTGTT+TGG 0.412687 2_3:+31874113 Msa0288080:CDS
TCAAATTATGCTTACTATTG+TGG 0.416944 2_3:+31875055 Msa0288080:CDS
TCAAACCAGATTCAGCCTTA+AGG 0.419155 2_3:-31873572 None:intergenic
TAGCCAAACTTGTTCCTGTT+GGG 0.428630 2_3:+31875015 Msa0288080:intron
GGTGTTTCTGGTGAGGGATC+TGG 0.436594 2_3:+31873999 Msa0288080:CDS
GTACCCAACAGGAACAAGTT+TGG 0.443426 2_3:-31875018 None:intergenic
ACTCTGGACATACTCATTGA+TGG 0.454635 2_3:-31875129 None:intergenic
TTCTTGATACCGTACCCAAC+AGG 0.456829 2_3:-31875029 None:intergenic
ATTATTAGAAATGACAATCA+AGG 0.459771 2_3:+31875325 Msa0288080:exon
CAGTTCCATCATATGAATAT+GGG 0.459928 2_3:+31873791 Msa0288080:CDS
TTAGGGTAATTTGCATTCCC+AGG 0.464593 2_3:-31875577 None:intergenic
TGGGAAATCCTCTGTATTGT+TGG 0.471062 2_3:+31874308 Msa0288080:CDS
TTCCGTTGACAATATGGTTG+AGG 0.479405 2_3:+31875088 Msa0288080:CDS
ATGTGACATTAAAATTTCAT+GGG 0.480876 2_3:+31875538 Msa0288080:three_prime_UTR
AGTTACACTCTATAACCTTA+AGG 0.486396 2_3:+31873557 Msa0288080:CDS
TTCTTCAAGCTTCTTCATGT+CGG 0.497830 2_3:-31874355 None:intergenic
AGCAGTGAGATCTGTTCAGT+TGG 0.499725 2_3:+31874377 Msa0288080:CDS
TTCGTATGACATGGAGATCA+TGG 0.500082 2_3:+31875284 Msa0288080:CDS
ACATTCCCATATTCATATGA+TGG 0.500557 2_3:-31873796 None:intergenic
TGATGTCATCCTTTGAAGCT+TGG 0.506163 2_3:-31873747 None:intergenic
GTGAGATCTGTTCAGTTGGA+AGG 0.509565 2_3:+31874381 Msa0288080:CDS
ATAGCCAAACTTGTTCCTGT+TGG 0.511083 2_3:+31875014 Msa0288080:intron
AGAAGAAGGCAGCTGAGGAA+CGG 0.514292 2_3:+31874153 Msa0288080:CDS
AAACTTGTTCCTGTTGGGTA+CGG 0.517929 2_3:+31875020 Msa0288080:CDS
TATTCATATGATGGAACTGA+TGG 0.520528 2_3:-31873787 None:intergenic
AGAGACTGAGGAAGAGAAGA+AGG 0.523236 2_3:+31874139 Msa0288080:CDS
CTTACACGCAGTTACATCAC+TGG 0.529989 2_3:+31873615 Msa0288080:CDS
GGGTGTCCTCTAACAAACCC+TGG 0.533538 2_3:+31875559 Msa0288080:three_prime_UTR
CTCTGGACATACTCATTGAT+GGG 0.540335 2_3:-31875128 None:intergenic
TGATGTAACTGCGTGTAAGA+AGG 0.549903 2_3:-31873611 None:intergenic
GTGTAGGTACCAAGCTTCAA+AGG 0.552158 2_3:+31873738 Msa0288080:intron
TAGGGTAATTTGCATTCCCA+GGG 0.558896 2_3:-31875576 None:intergenic
ATGTCGGTCTCATCATCCCA+TGG 0.564640 2_3:-31874339 None:intergenic
AAATGACAGCAACAAGAAGT+AGG 0.568483 2_3:-31875387 None:intergenic
CACAAAGGCTGCTGAAGCTG+AGG 0.571919 2_3:+31874082 Msa0288080:CDS
GGAACGGGCAGCAGCCGTGA+AGG 0.572363 2_3:+31874169 Msa0288080:CDS
TGAGATCTGTTCAGTTGGAA+GGG 0.572783 2_3:+31874382 Msa0288080:CDS
TATAGTGGTGTTTCTGGTGA+GGG 0.573048 2_3:+31873993 Msa0288080:intron
CTATAGTGGTGTTTCTGGTG+AGG 0.574940 2_3:+31873992 Msa0288080:intron
ATCCTCAACCATATTGTCAA+CGG 0.584339 2_3:-31875090 None:intergenic
AGGCCACAATGTCACAACTC+TGG 0.585892 2_3:-31875145 None:intergenic
CACTGTCGAATCTTCTCTTG+TGG 0.587184 2_3:+31874025 Msa0288080:CDS
ATGAATATGGGAATGTTGCT+AGG 0.597917 2_3:+31873803 Msa0288080:CDS
GGAAGAGAAGAAGGCAGCTG+AGG 0.604357 2_3:+31874148 Msa0288080:CDS
TATTGTTGGATGTGAAGCCA+TGG 0.605647 2_3:+31874322 Msa0288080:CDS
GGTGTCCTCTAACAAACCCT+GGG 0.608582 2_3:+31875560 Msa0288080:three_prime_UTR
GAGTTTACCTGTGTTAAGAG+AGG 0.611958 2_3:-31873174 None:intergenic
TTATTAGAAATGACAATCAA+GGG 0.619399 2_3:+31875326 Msa0288080:exon
TATGACATGGAGATCATGGT+AGG 0.620700 2_3:+31875288 Msa0288080:CDS
TGTGTCAGAAACTGGAGGAG+TGG 0.624152 2_3:-31874063 None:intergenic
TTACACGCAGTTACATCACT+GGG 0.625744 2_3:+31873616 Msa0288080:CDS
TCCTCCAGTTTCTGACACAA+AGG 0.631021 2_3:+31874067 Msa0288080:CDS
TGTCCAGAGTTGTGACATTG+TGG 0.639251 2_3:+31875142 Msa0288080:CDS
TGTGACATTAAAATTTCATG+GGG 0.642527 2_3:+31875539 Msa0288080:three_prime_UTR
GACATGGAGATCATGGTAGG+AGG 0.643475 2_3:+31875291 Msa0288080:CDS
AATCTGCAATTCGTATGACA+TGG 0.645534 2_3:+31875275 Msa0288080:CDS
ATTGTTGGATGTGAAGCCAT+GGG 0.652625 2_3:+31874323 Msa0288080:CDS
GCCTTTGTGTCAGAAACTGG+AGG 0.658117 2_3:-31874068 None:intergenic
CTCCTCGCCTCTCTTAACAC+AGG 0.661656 2_3:+31873167 Msa0288080:five_prime_UTR
TTTGTTTGGTGAAGAGACTG+AGG 0.673347 2_3:+31874127 Msa0288080:CDS
TACCTGTGTTAAGAGAGGCG+AGG 0.690075 2_3:-31873169 None:intergenic
CTTCACATCCAACAATACAG+AGG 0.716868 2_3:-31874316 None:intergenic
AATATGGGAATGTTGCTAGG+TGG 0.778608 2_3:+31873806 Msa0288080:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGTAAAAAATTGAATTTTT+TGG + chr2_3:31873473-31873492 Msa0288080:intron 10.0%
!!! AGTAAAAAGATTGAATTTTT+CGG + chr2_3:31873346-31873365 Msa0288080:intron 15.0%
!! AATCGACAAAAAAATAAAAA+TGG - chr2_3:31874444-31874463 None:intergenic 15.0%
!!! TTATTGTATACTATTTTTCA+AGG + chr2_3:31874723-31874742 Msa0288080:intron 15.0%
!!! TTAATGTTTTTGAAACATTA+GGG - chr2_3:31875597-31875616 None:intergenic 15.0%
!!! TTTAATGTTTTTGAAACATT+AGG - chr2_3:31875598-31875617 None:intergenic 15.0%
!! TATTGTTAACATCGAATTTA+GGG - chr2_3:31873240-31873259 None:intergenic 20.0%
!! GAAGTAGAAGAAAAAAAAAA+TGG + chr2_3:31873533-31873552 Msa0288080:intron 20.0%
!! TTCATATCCTCATAATTATT+TGG + chr2_3:31874230-31874249 Msa0288080:intron 20.0%
!!! TTGTTGTATACTATTTTTCA+AGG + chr2_3:31874534-31874553 Msa0288080:intron 20.0%
!! ATAGTATACAATAAACTGAA+TGG - chr2_3:31874717-31874736 None:intergenic 20.0%
!! AAAATAAGATATTTCGCTAT+TGG - chr2_3:31874862-31874881 None:intergenic 20.0%
!! ATAAACTAATATCAGAATCA+TGG - chr2_3:31874987-31875006 None:intergenic 20.0%
!!! TTACTTACAGATTTTATTGA+AGG - chr2_3:31875168-31875187 None:intergenic 20.0%
!! ATTATTAGAAATGACAATCA+AGG + chr2_3:31875325-31875344 Msa0288080:exon 20.0%
!! TTATTAGAAATGACAATCAA+GGG + chr2_3:31875326-31875345 Msa0288080:exon 20.0%
!! AAAAACAAAAATCTCATCTT+AGG - chr2_3:31875362-31875381 None:intergenic 20.0%
!!! TAAGATGAGATTTTTGTTTT+TGG + chr2_3:31875361-31875380 Msa0288080:three_prime_UTR 20.0%
!!! AAGATGAGATTTTTGTTTTT+GGG + chr2_3:31875362-31875381 Msa0288080:three_prime_UTR 20.0%
!! ATGTGACATTAAAATTTCAT+GGG + chr2_3:31875538-31875557 Msa0288080:three_prime_UTR 20.0%
! CTATTGTTAACATCGAATTT+AGG - chr2_3:31873241-31873260 None:intergenic 25.0%
!!! TTTTCGGTAATTTGTGTTAA+TGG + chr2_3:31873362-31873381 Msa0288080:intron 25.0%
!! TTTCGGTAATTTGTGTTAAT+GGG + chr2_3:31873363-31873382 Msa0288080:intron 25.0%
!!! TGTTTTTATTTGATCTGTGT+AGG + chr2_3:31873722-31873741 Msa0288080:intron 25.0%
! TAATTGACAAAGATGGTAAA+GGG - chr2_3:31873871-31873890 None:intergenic 25.0%
! ATAATTGACAAAGATGGTAA+AGG - chr2_3:31873872-31873891 None:intergenic 25.0%
! TCGAATATAATTGACAAAGA+TGG - chr2_3:31873878-31873897 None:intergenic 25.0%
!! ATAATTATTTGGAATCTGGT+TGG + chr2_3:31874241-31874260 Msa0288080:intron 25.0%
!!! ATATGTTTGTTTTCCACTAT+TGG + chr2_3:31874598-31874617 Msa0288080:intron 25.0%
!!! TATGTTTGTTTTCCACTATT+GGG + chr2_3:31874599-31874618 Msa0288080:intron 25.0%
!!! ATAAGTTTGTTTTCCACTAT+TGG + chr2_3:31874786-31874805 Msa0288080:intron 25.0%
!!! TAAGTTTGTTTTCCACTATT+GGG + chr2_3:31874787-31874806 Msa0288080:intron 25.0%
! TCAAATTATGCTTACTATTG+TGG + chr2_3:31875055-31875074 Msa0288080:CDS 25.0%
!!! TTCAGATTTTATTTGTCTGT+TGG + chr2_3:31875190-31875209 Msa0288080:intron 25.0%
! TAATGCCATATCATATTCTT+TGG + chr2_3:31875247-31875266 Msa0288080:intron 25.0%
! TTATAACACAATCCAGATAA+TGG - chr2_3:31875441-31875460 None:intergenic 25.0%
!! ATTCAAACTTTGAGAATTGT+AGG + chr2_3:31875463-31875482 Msa0288080:three_prime_UTR 25.0%
! CATGTGACATTAAAATTTCA+TGG + chr2_3:31875537-31875556 Msa0288080:three_prime_UTR 25.0%
! TGTGACATTAAAATTTCATG+GGG + chr2_3:31875539-31875558 Msa0288080:three_prime_UTR 25.0%
AGCCTTAAAAAACACAGATT+CGG - chr2_3:31873303-31873322 None:intergenic 30.0%
!! TCCTGATTTGAGTTTTTCTT+TGG + chr2_3:31873416-31873435 Msa0288080:intron 30.0%
!! CCTGATTTGAGTTTTTCTTT+GGG + chr2_3:31873417-31873436 Msa0288080:intron 30.0%
!! CTGATTTGAGTTTTTCTTTG+GGG + chr2_3:31873418-31873437 Msa0288080:intron 30.0%
!! TGATTTGAGTTTTTCTTTGG+GGG + chr2_3:31873419-31873438 Msa0288080:intron 30.0%
AGTTACACTCTATAACCTTA+AGG + chr2_3:31873557-31873576 Msa0288080:CDS 30.0%
! TATTCATATGATGGAACTGA+TGG - chr2_3:31873790-31873809 None:intergenic 30.0%
TCAGTTCCATCATATGAATA+TGG + chr2_3:31873790-31873809 Msa0288080:CDS 30.0%
CAGTTCCATCATATGAATAT+GGG + chr2_3:31873791-31873810 Msa0288080:CDS 30.0%
ACATTCCCATATTCATATGA+TGG - chr2_3:31873799-31873818 None:intergenic 30.0%
!! ATTGAGTTTTGTGACTATAG+TGG + chr2_3:31873978-31873997 Msa0288080:intron 30.0%
CCAGATTCCAAATAATTATG+AGG - chr2_3:31874240-31874259 None:intergenic 30.0%
! CCTCATAATTATTTGGAATC+TGG + chr2_3:31874237-31874256 Msa0288080:intron 30.0%
! TGGACATCAATTTAGAGTAT+TGG + chr2_3:31874261-31874280 Msa0288080:intron 30.0%
!!! ATTTTTCAAGGCTATGTCTA+CGG + chr2_3:31874546-31874565 Msa0288080:intron 30.0%
TCATATCTCACTTGATCTAA+TGG + chr2_3:31874635-31874654 Msa0288080:intron 30.0%
! AACAAGTTTGCTTTCACTAT+TGG - chr2_3:31874674-31874693 None:intergenic 30.0%
!!! TATTTTTCAAGGCATGTCTA+TGG + chr2_3:31874734-31874753 Msa0288080:intron 30.0%
ATGGTGCACAAATAAGATAT+TGG + chr2_3:31874753-31874772 Msa0288080:intron 30.0%
TTGTGACTTTATCCATTATC+TGG + chr2_3:31875426-31875445 Msa0288080:three_prime_UTR 30.0%
!!! TCCCGAATCTGTGTTTTTTA+AGG + chr2_3:31873298-31873317 Msa0288080:intron 35.0%
GCCTTAAAAAACACAGATTC+GGG - chr2_3:31873302-31873321 None:intergenic 35.0%
CCCAAAGAAAAACTCAAATC+AGG - chr2_3:31873420-31873439 None:intergenic 35.0%
TATAACCTTAAGGCTGAATC+TGG + chr2_3:31873567-31873586 Msa0288080:CDS 35.0%
ATGAATATGGGAATGTTGCT+AGG + chr2_3:31873803-31873822 Msa0288080:CDS 35.0%
!! GATGACGATGTTGATTTGTT+TGG + chr2_3:31874113-31874132 Msa0288080:CDS 35.0%
! TTTCTGCTGATTGCATTATC+AGG + chr2_3:31874285-31874304 Msa0288080:intron 35.0%
TTCTTCAAGCTTCTTCATGT+CGG - chr2_3:31874358-31874377 None:intergenic 35.0%
ACGGTGCACAAATAAGATAT+TGG + chr2_3:31874565-31874584 Msa0288080:intron 35.0%
GTGGAAAACAAACATATGCA+TGG - chr2_3:31874595-31874614 None:intergenic 35.0%
TATCTCACTTGATCTAATGG+TGG + chr2_3:31874638-31874657 Msa0288080:intron 35.0%
! AGTGAAAGCAAACTTGTTCA+CGG + chr2_3:31874676-31874695 Msa0288080:intron 35.0%
TAGATCAAGCGAGATATGAA+GGG - chr2_3:31874822-31874841 None:intergenic 35.0%
TTAGATCAAGCGAGATATGA+AGG - chr2_3:31874823-31874842 None:intergenic 35.0%
TCATATCTCGCTTGATCTAA+TGG + chr2_3:31874823-31874842 Msa0288080:intron 35.0%
! TCTTGTTTCCGTTGACAATA+TGG + chr2_3:31875082-31875101 Msa0288080:CDS 35.0%
ATCCTCAACCATATTGTCAA+CGG - chr2_3:31875093-31875112 None:intergenic 35.0%
CTGCACCAAAGAATATGATA+TGG - chr2_3:31875255-31875274 None:intergenic 35.0%
AATCTGCAATTCGTATGACA+TGG + chr2_3:31875275-31875294 Msa0288080:CDS 35.0%
AAATGACAGCAACAAGAAGT+AGG - chr2_3:31875390-31875409 None:intergenic 35.0%
GAGTTTACCTGTGTTAAGAG+AGG - chr2_3:31873177-31873196 None:intergenic 40.0%
TCAAACCAGATTCAGCCTTA+AGG - chr2_3:31873575-31873594 None:intergenic 40.0%
TGATGTAACTGCGTGTAAGA+AGG - chr2_3:31873614-31873633 None:intergenic 40.0%
TTACACGCAGTTACATCACT+GGG + chr2_3:31873616-31873635 Msa0288080:CDS 40.0%
!! TGATGTCATCCTTTGAAGCT+TGG - chr2_3:31873750-31873769 None:intergenic 40.0%
AATATGGGAATGTTGCTAGG+TGG + chr2_3:31873806-31873825 Msa0288080:CDS 40.0%
TGTGACTATAGTGGTGTTTC+TGG + chr2_3:31873987-31874006 Msa0288080:intron 40.0%
!! TATAGTGGTGTTTCTGGTGA+GGG + chr2_3:31873993-31874012 Msa0288080:intron 40.0%
! TTTGTTTGGTGAAGAGACTG+AGG + chr2_3:31874127-31874146 Msa0288080:CDS 40.0%
! TGCTGATTGCATTATCAGGT+GGG + chr2_3:31874289-31874308 Msa0288080:intron 40.0%
TGGGAAATCCTCTGTATTGT+TGG + chr2_3:31874308-31874327 Msa0288080:CDS 40.0%
CTTCACATCCAACAATACAG+AGG - chr2_3:31874319-31874338 None:intergenic 40.0%
TATTGTTGGATGTGAAGCCA+TGG + chr2_3:31874322-31874341 Msa0288080:CDS 40.0%
ATTGTTGGATGTGAAGCCAT+GGG + chr2_3:31874323-31874342 Msa0288080:CDS 40.0%
TGAGATCTGTTCAGTTGGAA+GGG + chr2_3:31874382-31874401 Msa0288080:CDS 40.0%
! TTCAGTTGGAAGGGTTGTTT+TGG + chr2_3:31874391-31874410 Msa0288080:CDS 40.0%
!! TCAGTTGGAAGGGTTGTTTT+GGG + chr2_3:31874392-31874411 Msa0288080:CDS 40.0%
TATCTCGCTTGATCTAATGG+TGG + chr2_3:31874826-31874845 Msa0288080:intron 40.0%
! ATAGCCAAACTTGTTCCTGT+TGG + chr2_3:31875014-31875033 Msa0288080:intron 40.0%
! TAGCCAAACTTGTTCCTGTT+GGG + chr2_3:31875015-31875034 Msa0288080:intron 40.0%
! AAACTTGTTCCTGTTGGGTA+CGG + chr2_3:31875020-31875039 Msa0288080:CDS 40.0%
TTCCGTTGACAATATGGTTG+AGG + chr2_3:31875088-31875107 Msa0288080:CDS 40.0%
CTCTGGACATACTCATTGAT+GGG - chr2_3:31875131-31875150 None:intergenic 40.0%
ACTCTGGACATACTCATTGA+TGG - chr2_3:31875132-31875151 None:intergenic 40.0%
TTCGTATGACATGGAGATCA+TGG + chr2_3:31875284-31875303 Msa0288080:CDS 40.0%
TATGACATGGAGATCATGGT+AGG + chr2_3:31875288-31875307 Msa0288080:CDS 40.0%
! TAGGGTAATTTGCATTCCCA+GGG - chr2_3:31875579-31875598 None:intergenic 40.0%
! TTAGGGTAATTTGCATTCCC+AGG - chr2_3:31875580-31875599 None:intergenic 40.0%
CTTACACGCAGTTACATCAC+TGG + chr2_3:31873615-31873634 Msa0288080:CDS 45.0%
GTGTAGGTACCAAGCTTCAA+AGG + chr2_3:31873738-31873757 Msa0288080:intron 45.0%
!! CTATAGTGGTGTTTCTGGTG+AGG + chr2_3:31873992-31874011 Msa0288080:intron 45.0%
CACTGTCGAATCTTCTCTTG+TGG + chr2_3:31874025-31874044 Msa0288080:CDS 45.0%
TCCTCCAGTTTCTGACACAA+AGG + chr2_3:31874067-31874086 Msa0288080:CDS 45.0%
AGAGACTGAGGAAGAGAAGA+AGG + chr2_3:31874139-31874158 Msa0288080:CDS 45.0%
! CTTTTTGCCAGATGCCTTCA+CGG - chr2_3:31874186-31874205 None:intergenic 45.0%
! CTGCTGATTGCATTATCAGG+TGG + chr2_3:31874288-31874307 Msa0288080:intron 45.0%
AGCAGTGAGATCTGTTCAGT+TGG + chr2_3:31874377-31874396 Msa0288080:CDS 45.0%
GTGAGATCTGTTCAGTTGGA+AGG + chr2_3:31874381-31874400 Msa0288080:CDS 45.0%
!! CAGTTGGAAGGGTTGTTTTG+GGG + chr2_3:31874393-31874412 Msa0288080:CDS 45.0%
GCGACTTAATGACCCAATAG+TGG - chr2_3:31874614-31874633 None:intergenic 45.0%
GGGACTTATTGACCCAATAG+TGG - chr2_3:31874802-31874821 None:intergenic 45.0%
GTACCCAACAGGAACAAGTT+TGG - chr2_3:31875021-31875040 None:intergenic 45.0%
TTCTTGATACCGTACCCAAC+AGG - chr2_3:31875032-31875051 None:intergenic 45.0%
TGTCCAGAGTTGTGACATTG+TGG + chr2_3:31875142-31875161 Msa0288080:CDS 45.0%
TACCTGTGTTAAGAGAGGCG+AGG - chr2_3:31873172-31873191 None:intergenic 50.0%
ACGCAGTTACATCACTGGGT+AGG + chr2_3:31873620-31873639 Msa0288080:intron 50.0%
CGCAGTTACATCACTGGGTA+GGG + chr2_3:31873621-31873640 Msa0288080:intron 50.0%
TGTGTCAGAAACTGGAGGAG+TGG - chr2_3:31874066-31874085 None:intergenic 50.0%
GCCTTTGTGTCAGAAACTGG+AGG - chr2_3:31874071-31874090 None:intergenic 50.0%
GCAGCCTTTGTGTCAGAAAC+TGG - chr2_3:31874074-31874093 None:intergenic 50.0%
AGAAGAAGGCAGCTGAGGAA+CGG + chr2_3:31874153-31874172 Msa0288080:CDS 50.0%
ATGTCGGTCTCATCATCCCA+TGG - chr2_3:31874342-31874361 None:intergenic 50.0%
AGGCCACAATGTCACAACTC+TGG - chr2_3:31875148-31875167 None:intergenic 50.0%
GACATGGAGATCATGGTAGG+AGG + chr2_3:31875291-31875310 Msa0288080:CDS 50.0%
GGTGTCCTCTAACAAACCCT+GGG + chr2_3:31875560-31875579 Msa0288080:three_prime_UTR 50.0%
!! GCATTCCCAGGGTTTGTTAG+AGG - chr2_3:31875568-31875587 None:intergenic 50.0%
CTCCTCGCCTCTCTTAACAC+AGG + chr2_3:31873167-31873186 Msa0288080:five_prime_UTR 55.0%
!! GGTGTTTCTGGTGAGGGATC+TGG + chr2_3:31873999-31874018 Msa0288080:CDS 55.0%
CACAAAGGCTGCTGAAGCTG+AGG + chr2_3:31874082-31874101 Msa0288080:CDS 55.0%
GGAAGAGAAGAAGGCAGCTG+AGG + chr2_3:31874148-31874167 Msa0288080:CDS 55.0%
GAAGAAGGCAGCTGAGGAAC+GGG + chr2_3:31874154-31874173 Msa0288080:CDS 55.0%
GGGTGTCCTCTAACAAACCC+TGG + chr2_3:31875559-31875578 Msa0288080:three_prime_UTR 55.0%
!! GCAGCAGCCGTGAAGGCATC+TGG + chr2_3:31874176-31874195 Msa0288080:CDS 65.0%
GGAACGGGCAGCAGCCGTGA+AGG + chr2_3:31874169-31874188 Msa0288080:CDS 70.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 31873110 31875641 31873110 ID=Msa0288080;Name=Msa0288080
chr2_3 mRNA 31873110 31875641 31873110 ID=Msa0288080-mRNA-1;Parent=Msa0288080;Name=Msa0288080-mRNA-1;_AED=0.09;_eAED=0.09;_QI=91|0.85|0.87|1|0.57|0.37|8|266|251
chr2_3 exon 31873110 31873188 31873110 ID=Msa0288080-mRNA-1:exon:10757;Parent=Msa0288080-mRNA-1
chr2_3 exon 31873540 31873637 31873540 ID=Msa0288080-mRNA-1:exon:10758;Parent=Msa0288080-mRNA-1
chr2_3 exon 31873744 31873860 31873744 ID=Msa0288080-mRNA-1:exon:10759;Parent=Msa0288080-mRNA-1
chr2_3 exon 31873998 31874212 31873998 ID=Msa0288080-mRNA-1:exon:10760;Parent=Msa0288080-mRNA-1
chr2_3 exon 31874307 31874420 31874307 ID=Msa0288080-mRNA-1:exon:10761;Parent=Msa0288080-mRNA-1
chr2_3 exon 31875018 31875183 31875018 ID=Msa0288080-mRNA-1:exon:10762;Parent=Msa0288080-mRNA-1
chr2_3 exon 31875275 31875484 31875275 ID=Msa0288080-mRNA-1:exon:10763;Parent=Msa0288080-mRNA-1
chr2_3 exon 31875528 31875641 31875528 ID=Msa0288080-mRNA-1:exon:10764;Parent=Msa0288080-mRNA-1
chr2_3 five_prime_UTR 31873110 31873188 31873110 ID=Msa0288080-mRNA-1:five_prime_utr;Parent=Msa0288080-mRNA-1
chr2_3 five_prime_UTR 31873540 31873551 31873540 ID=Msa0288080-mRNA-1:five_prime_utr;Parent=Msa0288080-mRNA-1
chr2_3 CDS 31873552 31873637 31873552 ID=Msa0288080-mRNA-1:cds;Parent=Msa0288080-mRNA-1
chr2_3 CDS 31873744 31873860 31873744 ID=Msa0288080-mRNA-1:cds;Parent=Msa0288080-mRNA-1
chr2_3 CDS 31873998 31874212 31873998 ID=Msa0288080-mRNA-1:cds;Parent=Msa0288080-mRNA-1
chr2_3 CDS 31874307 31874420 31874307 ID=Msa0288080-mRNA-1:cds;Parent=Msa0288080-mRNA-1
chr2_3 CDS 31875018 31875183 31875018 ID=Msa0288080-mRNA-1:cds;Parent=Msa0288080-mRNA-1
chr2_3 CDS 31875275 31875332 31875275 ID=Msa0288080-mRNA-1:cds;Parent=Msa0288080-mRNA-1
chr2_3 three_prime_UTR 31875333 31875484 31875333 ID=Msa0288080-mRNA-1:three_prime_utr;Parent=Msa0288080-mRNA-1
chr2_3 three_prime_UTR 31875528 31875641 31875528 ID=Msa0288080-mRNA-1:three_prime_utr;Parent=Msa0288080-mRNA-1
Gene Sequence

>Msa0288080

ATGGCAGTTACACTCTATAACCTTAAGGCTGAATCTGGTTTGAAGAAGCTTGATGAGTACCTTCTTACACGCAGTTACATCACTGGGTACCAAGCTTCAAAGGATGACATCACTGTTTATGCAGCTTTGCCATCAGTTCCATCATATGAATATGGGAATGTTGCTAGGTGGTACAAGCACATTGATGCTTTGTTGAGAATTGCTGGTGTTTCTGGTGAGGGATCTGGTGTCACTGTCGAATCTTCTCTTGTGGCTGAAGAGACTGTTGCCACTCCTCCAGTTTCTGACACAAAGGCTGCTGAAGCTGAGGATGAAGATGATGACGATGTTGATTTGTTTGGTGAAGAGACTGAGGAAGAGAAGAAGGCAGCTGAGGAACGGGCAGCAGCCGTGAAGGCATCTGGCAAAAAGAAAGAGAGTGGGAAATCCTCTGTATTGTTGGATGTGAAGCCATGGGATGATGAGACCGACATGAAGAAGCTTGAAGAAGCAGTGAGATCTGTTCAGTTGGAAGGGTTGTTTTGGGGTGCATCCAAACTTGTTCCTGTTGGGTACGGTATCAAGAAACTTCAAATTATGCTTACTATTGTGGATGATCTTGTTTCCGTTGACAATATGGTTGAGGATTATCTTACTGTTGAACCCATCAATGAGTATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATCTGTAAAATCTGCAATTCGTATGACATGGAGATCATGGTAGGAGGCAGAAATTGCTATTATTAG

Protein sequence

>Msa0288080

MAVTLYNLKAESGLKKLDEYLLTRSYITGYQASKDDITVYAALPSVPSYEYGNVARWYKHIDALLRIAGVSGEGSGVTVESSLVAEETVATPPVSDTKAAEAEDEDDDDVDLFGEETEEEKKAAEERAAAVKASGKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQLEGLFWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNMVEDYLTVEPINEYVQSCDIVAFNKICKICNSYDMEIMVGGRNCYY*