AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0684740

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0684740 MtrunA17_Chr4g0033031 98.160 489 9 0 1 489 1 489 0.0 989
Msa0684740 MtrunA17_Chr2g0329071 75.000 492 110 7 1 489 1 482 0.0 746
Msa0684740 MtrunA17_Chr3g0136071 30.047 213 124 7 36 240 19 214 6.54e-20 88.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0684740 AT4G12070.1 60.797 477 157 7 24 485 19 480 0.0 566

Find 142 sgRNAs with CRISPR-Local

Find 303 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGCAAATGCAAGTCTTTA+TGG 0.092607 4_4:-48370866 Msa0684740:CDS
CCTTTATATTGTGGTAAAAT+AGG 0.172977 4_4:-48369938 Msa0684740:three_prime_UTR
GAAAGAAAGTTGCTAGAATT+TGG 0.206757 4_4:+48371240 None:intergenic
ATAAGAAGAGTTATGTTCTT+AGG 0.207355 4_4:-48373888 Msa0684740:CDS
CACATGATAATGGCTGTATT+TGG 0.216961 4_4:+48370130 None:intergenic
AACAGAAACTTCAAGGTTAT+TGG 0.220695 4_4:-48370412 Msa0684740:CDS
ACACAAATCCGTCTTGTATT+CGG 0.245069 4_4:+48371304 None:intergenic
GCTGCCTTTGTAGCATTCTA+TGG 0.255561 4_4:+48374152 None:intergenic
TTCTCCTACATGTCTTCCTT+TGG 0.262059 4_4:-48370263 Msa0684740:CDS
CTTAATGCAGCTCAAGCTTC+AGG 0.272942 4_4:-48371132 Msa0684740:CDS
CACAAATCCGTCTTGTATTC+GGG 0.275599 4_4:+48371305 None:intergenic
TTGGTATGTTACATGTTAAA+TGG 0.286946 4_4:+48369689 None:intergenic
ATCGGTCCATGGTCATGTTT+TGG 0.301538 4_4:+48374235 None:intergenic
GTCGATGTAAGGAGAGTTTC+TGG 0.311540 4_4:+48370301 None:intergenic
GTTGATCCTAATTATCTTGT+TGG 0.311946 4_4:-48373859 Msa0684740:CDS
TGAATGTTCATAAAGACAAT+AGG 0.323697 4_4:+48371105 None:intergenic
CATTAAGCCATGCGTTTGCT+CGG 0.326296 4_4:+48371148 None:intergenic
AGCAACTCTATCTGAAGCTT+TGG 0.328522 4_4:+48371203 None:intergenic
AGTTTACCGGCCACACGTTC+AGG 0.338159 4_4:-48370459 Msa0684740:CDS
TCTCCTACATGTCTTCCTTT+GGG 0.340994 4_4:-48370262 Msa0684740:CDS
TTGATCCTAATTATCTTGTT+GGG 0.349886 4_4:-48373858 Msa0684740:CDS
TTGTATCTGTGACAGATATC+TGG 0.355727 4_4:-48370941 Msa0684740:intron
TCTCATTGTCCTCCACCAAC+TGG 0.362829 4_4:-48370008 Msa0684740:CDS
AGCTTTGGGAAGAAGTAATA+TGG 0.376670 4_4:+48371218 None:intergenic
GGATGTCTCATTCAGATTCC+AGG 0.377533 4_4:-48370034 Msa0684740:CDS
CAACTGGGTATGAATAAGTA+TGG 0.377698 4_4:-48369992 Msa0684740:exon
GGCTGTATTTGGTTCTCGTT+AGG 0.379960 4_4:+48370141 None:intergenic
ATGATATACCTTTGTAAGTA+AGG 0.380151 4_4:+48371074 None:intergenic
AACCTCTTCTGTACGACTAA+TGG 0.382104 4_4:+48370718 None:intergenic
AGTATATAACATCATTTAAC+AGG 0.384911 4_4:-48369885 Msa0684740:three_prime_UTR
ATCTTGAGAGAGGTGCCGTT+GGG 0.389150 4_4:-48370056 Msa0684740:CDS
TTAGATCCTTCACATGATAA+TGG 0.391394 4_4:+48370120 None:intergenic
CAAGGTTATTGGTAGTTTCA+AGG 0.392429 4_4:-48370401 Msa0684740:CDS
TAAGAAGAGTTATGTTCTTA+GGG 0.395997 4_4:-48373887 Msa0684740:CDS
CCATGGATGGTTTCATCAAC+CGG 0.398531 4_4:-48370357 Msa0684740:CDS
TTGTTAGAGCAATTCGACTA+TGG 0.399167 4_4:-48370811 Msa0684740:CDS
TTCAAAGCACCTTTCAAGAA+TGG 0.401377 4_4:-48374036 Msa0684740:CDS
ATTAATATGCACAAGTGAAA+TGG 0.416623 4_4:+48369717 None:intergenic
AACTAGCAACAGAAACTTCA+AGG 0.431115 4_4:-48370419 Msa0684740:CDS
CGAAGGTAAAGAAAGTTTAC+CGG 0.439767 4_4:-48370472 Msa0684740:CDS
ATTACCACCTCAAGTTCAAT+TGG 0.440043 4_4:-48370172 Msa0684740:CDS
AACTTTAGTGTGTCGATGTA+AGG 0.445676 4_4:+48370290 None:intergenic
AGGAAGACATGTAGGAGAAT+AGG 0.447610 4_4:+48370267 None:intergenic
GCAACTCTATCTGAAGCTTT+GGG 0.447688 4_4:+48371204 None:intergenic
TTTGAAAATGGTTGGTCCAT+AGG 0.448038 4_4:-48369454 Msa0684740:three_prime_UTR
CATGATATACTGTATTGCTT+TGG 0.449479 4_4:-48369627 Msa0684740:three_prime_UTR
GTTCAGCTAACTCATTGATA+AGG 0.463814 4_4:-48374059 Msa0684740:CDS
GTTGAAGAGTTTCGAGTTGG+TGG 0.466680 4_4:-48374081 Msa0684740:CDS
CACAGAGGGAGACAAGGGTT+TGG 0.469242 4_4:+48370200 None:intergenic
CACTTGAAGTAGCCATTGTT+CGG 0.471202 4_4:+48370238 None:intergenic
GAATGTTCATAAAGACAATA+GGG 0.477955 4_4:+48371106 None:intergenic
ATTAAGCCATGCGTTTGCTC+GGG 0.480604 4_4:+48371149 None:intergenic
TGGAGGACAATGAGAAATCC+TGG 0.485709 4_4:+48370016 None:intergenic
ACGGATTTGTGTCGTATCCA+TGG 0.485817 4_4:-48371293 Msa0684740:CDS
GCTTCTTCCACGGTAAATGC+AGG 0.488375 4_4:-48370911 Msa0684740:CDS
TCGACTATGGTATGCTCCAA+TGG 0.488995 4_4:-48370798 Msa0684740:CDS
ACCGGTTTGAAGCATGTCTC+CGG 0.492866 4_4:+48374110 None:intergenic
AAAGAGAAAGTGAGAGTGAG+AGG 0.496030 4_4:+48374310 None:intergenic
TTAATGCAGCTCAAGCTTCA+GGG 0.497415 4_4:-48371131 Msa0684740:CDS
TCACTGATATTGATATCAGT+TGG 0.502078 4_4:+48370096 None:intergenic
CGCTGCAAACCTTTATATTG+TGG 0.505238 4_4:-48369947 Msa0684740:three_prime_UTR
ACTGTATTGCTTTGGTCTTG+AGG 0.508281 4_4:-48369619 Msa0684740:three_prime_UTR
AGAAAGTGAGAGTGAGAGGG+TGG 0.510273 4_4:+48374314 None:intergenic
AGCTGCTTTGTGATGATGAT+CGG 0.510565 4_4:+48374217 None:intergenic
ACCGGAGACATGCTTCAAAC+CGG 0.510805 4_4:-48374111 Msa0684740:CDS
CGACTATGGTATGCTCCAAT+GGG 0.510854 4_4:-48370797 Msa0684740:CDS
TAAAGGTTTGCAGCGTATCC+CGG 0.512372 4_4:+48369955 None:intergenic
TCAAAGAGTCCTTCCATGGA+TGG 0.516208 4_4:-48370370 Msa0684740:CDS
TTTCAGCTTCAAGGAGCAGT+AGG 0.518097 4_4:-48371350 Msa0684740:intron
ATTGAGAACTCTCCTCCCAT+TGG 0.522546 4_4:+48370782 None:intergenic
CAAATCAAAGAGTCCTTCCA+TGG 0.522589 4_4:-48370374 Msa0684740:CDS
GTATTTGGTTCTCGTTAGGA+CGG 0.522960 4_4:+48370145 None:intergenic
CTTTGTAGCATTCTATGGAT+AGG 0.525828 4_4:+48374157 None:intergenic
CTCATTGTCCTCCACCAACT+GGG 0.526561 4_4:-48370007 Msa0684740:CDS
TCAAAATCCGACGAATGGAC+CGG 0.527320 4_4:-48374129 Msa0684740:CDS
AATTGAACTTGAGGTGGTAA+TGG 0.528123 4_4:+48370174 None:intergenic
TCCTGCATCCTCCTCTCCCA+TGG 0.528730 4_4:+48371276 None:intergenic
ATTTGCAATGTTGCATAAGT+CGG 0.529271 4_4:+48370880 None:intergenic
CATGTCTCCGGTCCATTCGT+CGG 0.532195 4_4:+48374122 None:intergenic
CAATGGAGTTTATTGATCCA+AGG 0.532642 4_4:+48369815 None:intergenic
ACTTATTCATACCCAGTTGG+TGG 0.536948 4_4:+48369996 None:intergenic
TGCCATTAGTCGTACAGAAG+AGG 0.540601 4_4:-48370720 Msa0684740:intron
CTTAGTCCTGAACGTGTGGC+CGG 0.540695 4_4:+48370453 None:intergenic
AGGTGAGTTTACTTTGTCTG+TGG 0.543628 4_4:+48374278 None:intergenic
AGCTTGTTCAGACATAGAAA+AGG 0.546325 4_4:-48369550 Msa0684740:three_prime_UTR
GGTGAGTTTACTTTGTCTGT+GGG 0.551496 4_4:+48374279 None:intergenic
GTCGTAACAACGAATTGCTC+CGG 0.553749 4_4:+48370338 None:intergenic
AAACTCTTCAACTATGTCAC+CGG 0.553772 4_4:+48374092 None:intergenic
CGGATTTGTGTCGTATCCAT+GGG 0.557632 4_4:-48371292 Msa0684740:CDS
AACTGAGTCCTTACTTACAA+AGG 0.562223 4_4:-48371082 Msa0684740:intron
CATCTTGAGAGAGGTGCCGT+TGG 0.566899 4_4:-48370057 Msa0684740:CDS
GATTATCACGGAGTAGACAT+TGG 0.567606 4_4:-48370836 Msa0684740:CDS
AGCTTCAAGGAGCAGTAGGA+TGG 0.567724 4_4:-48371346 Msa0684740:CDS
ATAGTTGAAGAGTTTCGAGT+TGG 0.572073 4_4:-48374084 Msa0684740:CDS
CCGGTTGATGAAACCATCCA+TGG 0.572978 4_4:+48370357 None:intergenic
TCCATGGGAGAGGAGGATGC+AGG 0.573681 4_4:-48371277 Msa0684740:CDS
GTCACGAGAGGGTGAGTCTG+AGG 0.578216 4_4:+48374188 None:intergenic
AAGAGAAAGTGAGAGTGAGA+GGG 0.579942 4_4:+48374311 None:intergenic
AATAGAGATAAAACTTAGAG+AGG 0.581818 4_4:-48370762 Msa0684740:CDS
TATTCATACCCAGTTGGTGG+AGG 0.582970 4_4:+48369999 None:intergenic
TATTTCATTTAATTTAACAA+TGG 0.585759 4_4:+48369798 None:intergenic
CTTCCTTTGGGACCGAACAA+TGG 0.586807 4_4:-48370250 Msa0684740:CDS
TTGTGTCGTATCCATGGGAG+AGG 0.587849 4_4:-48371287 Msa0684740:CDS
TGGCAACACAGAGGGAGACA+AGG 0.590701 4_4:+48370194 None:intergenic
CACTAGCCCGAGCAAACGCA+TGG 0.594767 4_4:-48371155 Msa0684740:CDS
GCAGCTCAAAATCCGACGAA+TGG 0.595906 4_4:-48374134 Msa0684740:CDS
TATGGTTTCGAAGATTATCA+CGG 0.596693 4_4:-48370848 Msa0684740:CDS
TGCTTCTCGCTACAATGATG+TGG 0.598991 4_4:-48371184 Msa0684740:CDS
TAATGCAGCTCAAGCTTCAG+GGG 0.601342 4_4:-48371130 Msa0684740:CDS
TCTTGAGAGAGGTGCCGTTG+GGG 0.603270 4_4:-48370055 Msa0684740:CDS
GGTCCCAAAGGAAGACATGT+AGG 0.606339 4_4:+48370259 None:intergenic
CATACTTATTCATACCCAGT+TGG 0.606484 4_4:+48369993 None:intergenic
GGCAACACAGAGGGAGACAA+GGG 0.608189 4_4:+48370195 None:intergenic
TAGCCATTGTTCGGTCCCAA+AGG 0.609219 4_4:+48370247 None:intergenic
TTGTGATGATGATCGGTCCA+TGG 0.611510 4_4:+48374224 None:intergenic
TGTCGTATCCATGGGAGAGG+AGG 0.615371 4_4:-48371284 Msa0684740:CDS
TTGATGAAACCATCCATGGA+AGG 0.617269 4_4:+48370361 None:intergenic
GATGAGTATGCTGAGTTGCA+AGG 0.618360 4_4:-48373931 Msa0684740:CDS
CAGCCGACGCATCTTGAGAG+AGG 0.619905 4_4:-48370066 Msa0684740:CDS
GCTGAGTGCTTTCAACTCCA+AGG 0.619906 4_4:-48373817 Msa0684740:intron
ACCTTTCCAAAACATGACCA+TGG 0.620615 4_4:-48374241 Msa0684740:exon
TCATGCACAAGCTATCACCT+TGG 0.622291 4_4:-48369832 Msa0684740:three_prime_UTR
TGGAGAGACAGCTTCTTCCA+CGG 0.622895 4_4:-48370921 Msa0684740:CDS
GGTGGTAATGGCAACACAGA+GGG 0.625903 4_4:+48370186 None:intergenic
ATACAGCCATTATCATGTGA+AGG 0.629607 4_4:-48370126 Msa0684740:CDS
AGAGAGGAAGATACAAAGCT+CGG 0.630539 4_4:-48370746 Msa0684740:CDS
CGGTGTGCCAATTGAACTTG+AGG 0.632200 4_4:+48370165 None:intergenic
CTATCCATAGAATGCTACAA+AGG 0.635986 4_4:-48374156 Msa0684740:CDS
CTATGGTATGCTCCAATGGG+AGG 0.639482 4_4:-48370794 Msa0684740:CDS
TGTGGTAAAATAGGAAAATG+CGG 0.639936 4_4:-48369929 Msa0684740:three_prime_UTR
CTTCTTCCACGGTAAATGCA+GGG 0.648908 4_4:-48370910 Msa0684740:CDS
ATTGCTTAGTCCTGAACGTG+TGG 0.649167 4_4:+48370449 None:intergenic
GCACCTCTCTCAAGATGCGT+CGG 0.658569 4_4:+48370063 None:intergenic
ATACTTGTTAGAGTTAGACG+TGG 0.662398 4_4:-48373958 Msa0684740:CDS
AGGACTTTGAAGTCACGAGA+GGG 0.672645 4_4:+48374177 None:intergenic
TAATGACCCTGCATTTACCG+TGG 0.676448 4_4:+48370904 None:intergenic
ATATCATGTATGTACAAACA+AGG 0.687023 4_4:+48369642 None:intergenic
TAGGACTTTGAAGTCACGAG+AGG 0.690395 4_4:+48374176 None:intergenic
TCATCATCAGTAATTGACGA+AGG 0.696045 4_4:-48370489 Msa0684740:CDS
TCTGAATGAGACATCCCCAA+CGG 0.719239 4_4:+48370041 None:intergenic
TGTGCCAATTGAACTTGAGG+TGG 0.723647 4_4:+48370168 None:intergenic
AGGTGGTAATGGCAACACAG+AGG 0.738008 4_4:+48370185 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAATTTTTTTTTTTTTTA+TGG - chr4_4:48370260-48370279 Msa0684740:CDS 0.0%
!! TAGATAATTAATTCAATTTA+GGG + chr4_4:48370406-48370425 None:intergenic 10.0%
!!! TATTTCATTTAATTTAACAA+TGG + chr4_4:48373976-48373995 None:intergenic 10.0%
!!! TTTTAGTAGTTTTTTAAACA+TGG - chr4_4:48370020-48370039 Msa0684740:CDS 15.0%
!! CAGTGAATTTAATAAAATTA+TGG - chr4_4:48370088-48370107 Msa0684740:CDS 15.0%
!! GTAGATAATTAATTCAATTT+AGG + chr4_4:48370407-48370426 None:intergenic 15.0%
!!! TAAGCAAAAATTAACTTTTT+AGG - chr4_4:48370533-48370552 Msa0684740:intron 15.0%
!! AATTAAACAAATGAATGTAT+TGG - chr4_4:48370704-48370723 Msa0684740:intron 15.0%
!! ATATTTATTATTCTAGACTT+GGG + chr4_4:48371810-48371829 None:intergenic 15.0%
!! TTTATAATATCTTCATCTAA+TGG - chr4_4:48372377-48372396 Msa0684740:intron 15.0%
!!! GTTCTATTTTCTTAAATTAT+CGG + chr4_4:48373152-48373171 None:intergenic 15.0%
!!! ACTATTAATCAGATTTTATT+TGG + chr4_4:48373869-48373888 None:intergenic 15.0%
!!! TAACTCTTCTTATTTTCATT+AGG + chr4_4:48369876-48369895 None:intergenic 20.0%
!! TTAAATCACATTGAAAATGA+TGG - chr4_4:48370342-48370361 Msa0684740:CDS 20.0%
!! TCATTAGTGTAGATTAAATT+TGG - chr4_4:48370454-48370473 Msa0684740:CDS 20.0%
!!! TTCATTTGTTTAATTTAACC+TGG + chr4_4:48370699-48370718 None:intergenic 20.0%
!!! GTTTTCTCCTTTTATTATTA+GGG - chr4_4:48371138-48371157 Msa0684740:CDS 20.0%
!!! ATTTTGTCCCTAATAATAAA+AGG + chr4_4:48371148-48371167 None:intergenic 20.0%
!!! CAATAGATTTGTTGAAATTA+CGG - chr4_4:48371195-48371214 Msa0684740:CDS 20.0%
!! GATATTTATTATTCTAGACT+TGG + chr4_4:48371811-48371830 None:intergenic 20.0%
!! CTCAAAAAAATATGGTTAAA+TGG + chr4_4:48371833-48371852 None:intergenic 20.0%
!! GTTATTGTCTCAAAAAAATA+TGG + chr4_4:48371841-48371860 None:intergenic 20.0%
!! TTGTGATTCTTAATACTTTA+TGG - chr4_4:48372016-48372035 Msa0684740:intron 20.0%
!!! TAATAATTTTGTGATCAACA+GGG - chr4_4:48373246-48373265 Msa0684740:intron 20.0%
!! AGTATATAACATCATTTAAC+AGG - chr4_4:48373886-48373905 Msa0684740:CDS 20.0%
!!! AGTTATTCAACTTTTGAAAA+TGG - chr4_4:48374305-48374324 Msa0684740:five_prime_UTR 20.0%
! ATAAGAAGAGTTATGTTCTT+AGG - chr4_4:48369883-48369902 Msa0684740:three_prime_UTR 25.0%
! TAAGAAGAGTTATGTTCTTA+GGG - chr4_4:48369884-48369903 Msa0684740:three_prime_UTR 25.0%
! TTGATCCTAATTATCTTGTT+GGG - chr4_4:48369913-48369932 Msa0684740:three_prime_UTR 25.0%
! AAAAACCCAACAAGATAATT+AGG + chr4_4:48369921-48369940 None:intergenic 25.0%
!! TAATTATCTTGTTGGGTTTT+TGG - chr4_4:48369920-48369939 Msa0684740:three_prime_UTR 25.0%
! ATTAAGAAGTAATAGTACCT+TGG + chr4_4:48369974-48369993 None:intergenic 25.0%
! AGTTAGAATTCGTGTATATT+TGG - chr4_4:48370060-48370079 Msa0684740:CDS 25.0%
!! TTATGGTTACATAGTGATTT+TGG - chr4_4:48370105-48370124 Msa0684740:CDS 25.0%
! TTAGGTTCAACTTAGATTAA+TGG + chr4_4:48370164-48370183 None:intergenic 25.0%
! ACAAGTAGGAGTAAAAAATT+AGG + chr4_4:48370213-48370232 None:intergenic 25.0%
! CATTCAATAAATGATGTATG+TGG - chr4_4:48370558-48370577 Msa0684740:intron 25.0%
! TGATGTATGTGATCTATATA+TGG + chr4_4:48370585-48370604 None:intergenic 25.0%
!!! TAAGCAAAAGTTCACTTTTT+AGG + chr4_4:48370621-48370640 None:intergenic 25.0%
! CTTACAGCTACTAATAAATA+CGG - chr4_4:48370924-48370943 Msa0684740:CDS 25.0%
!! AACACCATTACCTTAATTTT+TGG - chr4_4:48371042-48371061 Msa0684740:intron 25.0%
! TTAATCTCATACAAATGTGA+GGG - chr4_4:48371111-48371130 Msa0684740:CDS 25.0%
!! CGTTTTCTCCTTTTATTATT+AGG - chr4_4:48371137-48371156 Msa0684740:CDS 25.0%
! TATTAGGGACAAAATTAATC+TGG - chr4_4:48371153-48371172 Msa0684740:CDS 25.0%
! TACAAATATGTCTCATATCA+AGG - chr4_4:48371234-48371253 Msa0684740:CDS 25.0%
!!! TTTTTTACATACACATAAGC+CGG + chr4_4:48371473-48371492 None:intergenic 25.0%
! TGTAAAAAAATCCAGTTGAA+AGG - chr4_4:48371484-48371503 Msa0684740:intron 25.0%
!! TTAATTTGAAGTGTTTGTGT+TGG + chr4_4:48371669-48371688 None:intergenic 25.0%
!!! ATATCAGTTTCAACTTGTTA+GGG + chr4_4:48372121-48372140 None:intergenic 25.0%
!! AATATCAGTTTCAACTTGTT+AGG + chr4_4:48372122-48372141 None:intergenic 25.0%
! TTCAATGTAATCATATGTGT+CGG - chr4_4:48372162-48372181 Msa0684740:intron 25.0%
! TATAAATTATACCAGTGCAT+AGG + chr4_4:48372258-48372277 None:intergenic 25.0%
! GAATGTTCATAAAGACAATA+GGG + chr4_4:48372668-48372687 None:intergenic 25.0%
! TGAATGTTCATAAAGACAAT+AGG + chr4_4:48372669-48372688 None:intergenic 25.0%
! ATGATATACCTTTGTAAGTA+AGG + chr4_4:48372700-48372719 None:intergenic 25.0%
! ATACAATTGTAAAATGGTCA+GGG + chr4_4:48372728-48372747 None:intergenic 25.0%
! AATCGGATACAATTGTAAAA+TGG + chr4_4:48372734-48372753 None:intergenic 25.0%
!! GACAAACAACAAATTTTATG+AGG + chr4_4:48372810-48372829 None:intergenic 25.0%
! AATAGAGATAAAACTTAGAG+AGG - chr4_4:48373009-48373028 Msa0684740:intron 25.0%
!! CTAATAATTTTGTGATCAAC+AGG - chr4_4:48373245-48373264 Msa0684740:intron 25.0%
!! CCTATTTTACCACAATATAA+AGG + chr4_4:48373836-48373855 None:intergenic 25.0%
! CCTTTATATTGTGGTAAAAT+AGG - chr4_4:48373833-48373852 Msa0684740:CDS 25.0%
! ATTAATATGCACAAGTGAAA+TGG + chr4_4:48374057-48374076 None:intergenic 25.0%
! TTGGTATGTTACATGTTAAA+TGG + chr4_4:48374085-48374104 None:intergenic 25.0%
! AAAAAGAACATGGATGATAT+TGG + chr4_4:48374104-48374123 None:intergenic 25.0%
! ATATCATGTATGTACAAACA+AGG + chr4_4:48374132-48374151 None:intergenic 25.0%
!!! TTGAGGCTTTTAATTTGTTA+GGG - chr4_4:48374169-48374188 Msa0684740:CDS 25.0%
!!! ATTCAACTTTTGAAAATGGT+TGG - chr4_4:48374309-48374328 Msa0684740:five_prime_UTR 25.0%
!! AAAGGTTTGGATTTTGTTTG+AGG + chr4_4:48369516-48369535 None:intergenic 30.0%
!!! CCATTTTTTCCATTCTTGAA+AGG + chr4_4:48369747-48369766 None:intergenic 30.0%
CCTTTCAAGAATGGAAAAAA+TGG - chr4_4:48369744-48369763 Msa0684740:three_prime_UTR 30.0%
GTTGATCCTAATTATCTTGT+TGG - chr4_4:48369912-48369931 Msa0684740:three_prime_UTR 30.0%
TCAACTTGGAGATAACAATT+AGG + chr4_4:48370182-48370201 None:intergenic 30.0%
ATTAGGAGAACAAATCAACT+TGG + chr4_4:48370196-48370215 None:intergenic 30.0%
! TCAATTTAGGGTTAAAGTTG+TGG + chr4_4:48370394-48370413 None:intergenic 30.0%
ATAAATAATCTTACTCCCTC+TGG - chr4_4:48370501-48370520 Msa0684740:CDS 30.0%
! CTTTTGCTTATAATAGTGAC+CGG - chr4_4:48370631-48370650 Msa0684740:intron 30.0%
AGCAACAAAGTCACATATTA+TGG + chr4_4:48370752-48370771 None:intergenic 30.0%
ATATGTGACTTTGTTGCTAT+TGG - chr4_4:48370754-48370773 Msa0684740:CDS 30.0%
GTAGTTACTTCTTAGTTACA+CGG - chr4_4:48370799-48370818 Msa0684740:CDS 30.0%
CGTATTTATTAGTAGCTGTA+AGG + chr4_4:48370926-48370945 None:intergenic 30.0%
!!! TTAAGGTAATGGTGTTGTTT+TGG + chr4_4:48371038-48371057 None:intergenic 30.0%
CCTACCAAAAATTAAGGTAA+TGG + chr4_4:48371049-48371068 None:intergenic 30.0%
!!! CCATTACCTTAATTTTTGGT+AGG - chr4_4:48371046-48371065 Msa0684740:intron 30.0%
AAGCTACCTACCAAAAATTA+AGG + chr4_4:48371055-48371074 None:intergenic 30.0%
CTTAATCTCATACAAATGTG+AGG - chr4_4:48371110-48371129 Msa0684740:CDS 30.0%
TCATATCAAGGTGAATTTGT+CGG - chr4_4:48371246-48371265 Msa0684740:CDS 30.0%
TAACTGTGACTAATCTTCTT+CGG + chr4_4:48371542-48371561 None:intergenic 30.0%
!!! TTGGTGCTTATTTTGAGTAA+CGG + chr4_4:48371631-48371650 None:intergenic 30.0%
! TTGTGTTGGATTTTCCAAAA+AGG + chr4_4:48371655-48371674 None:intergenic 30.0%
AACTTTCAATATTGTGTCTG+AGG - chr4_4:48371716-48371735 Msa0684740:intron 30.0%
TATTATTCTAGACTTGGGTT+AGG + chr4_4:48371805-48371824 None:intergenic 30.0%
TCTAAAGATGTGAAAAATGC+TGG + chr4_4:48371957-48371976 None:intergenic 30.0%
AATGTATGTATCAATAGCTG+TGG + chr4_4:48372059-48372078 None:intergenic 30.0%
GAAAGAAAGTTGCTAGAATT+TGG + chr4_4:48372534-48372553 None:intergenic 30.0%
GATACAATTGTAAAATGGTC+AGG + chr4_4:48372729-48372748 None:intergenic 30.0%
GTTTGACCTTAAAATCGTAA+GGG + chr4_4:48372768-48372787 None:intergenic 30.0%
AGTTTGACCTTAAAATCGTA+AGG + chr4_4:48372769-48372788 None:intergenic 30.0%
ATTTGCAATGTTGCATAAGT+CGG + chr4_4:48372894-48372913 None:intergenic 30.0%
ATTGCAAATGCAAGTCTTTA+TGG - chr4_4:48372905-48372924 Msa0684740:intron 30.0%
TATGGTTTCGAAGATTATCA+CGG - chr4_4:48372923-48372942 Msa0684740:intron 30.0%
TCAATGTTTCATAGCATGTA+CGG + chr4_4:48373099-48373118 None:intergenic 30.0%
AACAGAAACTTCAAGGTTAT+TGG - chr4_4:48373359-48373378 Msa0684740:intron 30.0%
TTAGATCCTTCACATGATAA+TGG + chr4_4:48373654-48373673 None:intergenic 30.0%
TCACTGATATTGATATCAGT+TGG + chr4_4:48373678-48373697 None:intergenic 30.0%
TGTGGTAAAATAGGAAAATG+CGG - chr4_4:48373842-48373861 Msa0684740:CDS 30.0%
CATGATATACTGTATTGCTT+TGG - chr4_4:48374144-48374163 Msa0684740:CDS 30.0%
!!! CTTGAGGCTTTTAATTTGTT+AGG - chr4_4:48374168-48374187 Msa0684740:CDS 30.0%
!!! AATTGCTTTTTGTGCTTAGT+AGG - chr4_4:48374260-48374279 Msa0684740:five_prime_UTR 30.0%
CTTTGTAGCATTCTATGGAT+AGG + chr4_4:48369617-48369636 None:intergenic 35.0%
CTATCCATAGAATGCTACAA+AGG - chr4_4:48369615-48369634 Msa0684740:three_prime_UTR 35.0%
AAACTCTTCAACTATGTCAC+CGG + chr4_4:48369682-48369701 None:intergenic 35.0%
! ATAGTTGAAGAGTTTCGAGT+TGG - chr4_4:48369687-48369706 Msa0684740:three_prime_UTR 35.0%
GTTCAGCTAACTCATTGATA+AGG - chr4_4:48369712-48369731 Msa0684740:three_prime_UTR 35.0%
! TTCAAAGCACCTTTCAAGAA+TGG - chr4_4:48369735-48369754 Msa0684740:three_prime_UTR 35.0%
! ATACTTGTTAGAGTTAGACG+TGG - chr4_4:48369813-48369832 Msa0684740:three_prime_UTR 35.0%
! CTTTTGCAAGAAAGACAAGT+AGG + chr4_4:48370227-48370246 None:intergenic 35.0%
TGCTTATAATAGTGACCAGA+GGG + chr4_4:48370519-48370538 None:intergenic 35.0%
TTGCTTATAATAGTGACCAG+AGG + chr4_4:48370520-48370539 None:intergenic 35.0%
ATCATATAAGATACTCCCTC+CGG + chr4_4:48370653-48370672 None:intergenic 35.0%
! TATTTGATGTGTCGATATCC+AGG - chr4_4:48370678-48370697 Msa0684740:intron 35.0%
TTACTTCTTAGTTACACGGT+TGG - chr4_4:48370803-48370822 Msa0684740:CDS 35.0%
!!! ATGGTGTTGTTTTGGCAAAT+GGG + chr4_4:48371030-48371049 None:intergenic 35.0%
!!! AATGGTGTTGTTTTGGCAAA+TGG + chr4_4:48371031-48371050 None:intergenic 35.0%
!!! TTTTTGGTAGGTAGCTTGTT+TGG - chr4_4:48371058-48371077 Msa0684740:intron 35.0%
! AGTGCTACTATCATACTATG+TGG + chr4_4:48371084-48371103 None:intergenic 35.0%
! ATCTTTTGCTAGATCACAAG+TGG + chr4_4:48371280-48371299 None:intergenic 35.0%
AACTGTGACTAATCTTCTTC+GGG + chr4_4:48371541-48371560 None:intergenic 35.0%
!!! TTTTCGGGTTACTACGATAT+AGG + chr4_4:48371586-48371605 None:intergenic 35.0%
ATATCGTAGTAACCCGAAAA+CGG - chr4_4:48371586-48371605 Msa0684740:intron 35.0%
!! TATTTTGAGTAACGGTAGGT+TGG + chr4_4:48371623-48371642 None:intergenic 35.0%
!!! TGCTTATTTTGAGTAACGGT+AGG + chr4_4:48371627-48371646 None:intergenic 35.0%
! AAATAAGCACCAAGCCTTTT+TGG - chr4_4:48371638-48371657 Msa0684740:intron 35.0%
! TTGGATTTTCCAAAAAGGCT+TGG + chr4_4:48371650-48371669 None:intergenic 35.0%
ATGAGTAACACGTAACTTGA+TGG + chr4_4:48371901-48371920 None:intergenic 35.0%
!! CATTAGCCTTGATCTATACA+CGG - chr4_4:48372075-48372094 Msa0684740:intron 35.0%
CTTTAGCCCTTGATTGAATA+CGG - chr4_4:48372225-48372244 Msa0684740:intron 35.0%
ACTAGACCGTATTCAATCAA+GGG + chr4_4:48372234-48372253 None:intergenic 35.0%
CACTTGTGTGTATCAAACAA+AGG + chr4_4:48372311-48372330 None:intergenic 35.0%
! AACTGTACTTTTCAGCTTCA+AGG - chr4_4:48372412-48372431 Msa0684740:intron 35.0%
ACAAAAACCCGAATACAAGA+CGG - chr4_4:48372459-48372478 Msa0684740:intron 35.0%
ACACAAATCCGTCTTGTATT+CGG + chr4_4:48372470-48372489 None:intergenic 35.0%
!! AGCTTTGGGAAGAAGTAATA+TGG + chr4_4:48372556-48372575 None:intergenic 35.0%
AACTGAGTCCTTACTTACAA+AGG - chr4_4:48372689-48372708 Msa0684740:intron 35.0%
TAAGGGACAGAGTTCAAAAT+CGG + chr4_4:48372751-48372770 None:intergenic 35.0%
!!! AAGGTCAAACTTTTGCTGTT+AGG - chr4_4:48372778-48372797 Msa0684740:intron 35.0%
TTGTATCTGTGACAGATATC+TGG - chr4_4:48372830-48372849 Msa0684740:intron 35.0%
TTGTTAGAGCAATTCGACTA+TGG - chr4_4:48372960-48372979 Msa0684740:intron 35.0%
ATGTACGGAAAATTCAGAGT+GGG + chr4_4:48373084-48373103 None:intergenic 35.0%
TCATCATCAGTAATTGACGA+AGG - chr4_4:48373282-48373301 Msa0684740:intron 35.0%
CGAAGGTAAAGAAAGTTTAC+CGG - chr4_4:48373299-48373318 Msa0684740:intron 35.0%
AACTAGCAACAGAAACTTCA+AGG - chr4_4:48373352-48373371 Msa0684740:intron 35.0%
! CAAGGTTATTGGTAGTTTCA+AGG - chr4_4:48373370-48373389 Msa0684740:intron 35.0%
! AACTTTAGTGTGTCGATGTA+AGG + chr4_4:48373484-48373503 None:intergenic 35.0%
AATTGAACTTGAGGTGGTAA+TGG + chr4_4:48373600-48373619 None:intergenic 35.0%
ATTACCACCTCAAGTTCAAT+TGG - chr4_4:48373599-48373618 Msa0684740:intron 35.0%
!! CACATGATAATGGCTGTATT+TGG + chr4_4:48373644-48373663 None:intergenic 35.0%
ATACAGCCATTATCATGTGA+AGG - chr4_4:48373645-48373664 Msa0684740:intron 35.0%
CATACTTATTCATACCCAGT+TGG + chr4_4:48373781-48373800 None:intergenic 35.0%
CAACTGGGTATGAATAAGTA+TGG - chr4_4:48373779-48373798 Msa0684740:intron 35.0%
!!! TATGGTTTTAAACTGCAGTC+CGG - chr4_4:48373797-48373816 Msa0684740:intron 35.0%
CAATGGAGTTTATTGATCCA+AGG + chr4_4:48373959-48373978 None:intergenic 35.0%
!!! ACAACTGTCGTTTTCATCAT+TGG + chr4_4:48374021-48374040 None:intergenic 35.0%
CAAGGTGAACAAAAAGAACA+TGG + chr4_4:48374114-48374133 None:intergenic 35.0%
! AGCTTGTTCAGACATAGAAA+AGG - chr4_4:48374221-48374240 Msa0684740:CDS 35.0%
! TTTTTGTGCTTAGTAGGTAG+TGG - chr4_4:48374266-48374285 Msa0684740:five_prime_UTR 35.0%
AAGAGAAAGTGAGAGTGAGA+GGG + chr4_4:48369463-48369482 None:intergenic 40.0%
AAAGAGAAAGTGAGAGTGAG+AGG + chr4_4:48369464-48369483 None:intergenic 40.0%
GGTGAGTTTACTTTGTCTGT+GGG + chr4_4:48369495-48369514 None:intergenic 40.0%
AGGTGAGTTTACTTTGTCTG+TGG + chr4_4:48369496-48369515 None:intergenic 40.0%
!!! GGTCATGTTTTGGAAAGGTT+TGG + chr4_4:48369529-48369548 None:intergenic 40.0%
ACCTTTCCAAAACATGACCA+TGG - chr4_4:48369530-48369549 Msa0684740:three_prime_UTR 40.0%
!!! TCCATGGTCATGTTTTGGAA+AGG + chr4_4:48369534-48369553 None:intergenic 40.0%
! AGCTGCTTTGTGATGATGAT+CGG + chr4_4:48369557-48369576 None:intergenic 40.0%
TTGCTTATAATAGTGACCGG+AGG - chr4_4:48370634-48370653 Msa0684740:intron 40.0%
TGCTTATAATAGTGACCGGA+GGG - chr4_4:48370635-48370654 Msa0684740:intron 40.0%
! GTGACTTTGTTGCTATTGGT+TGG - chr4_4:48370758-48370777 Msa0684740:CDS 40.0%
! CGACAGGTAATAAAAGCACA+CGG - chr4_4:48370953-48370972 Msa0684740:intron 40.0%
!!! TGGTGTTGTTTTGGCAAATG+GGG + chr4_4:48371029-48371048 None:intergenic 40.0%
AGGTGAATTTGTCGGAACTA+TGG - chr4_4:48371254-48371273 Msa0684740:CDS 40.0%
CGTTGCTACCAACAATAGAT+TGG - chr4_4:48371394-48371413 Msa0684740:intron 40.0%
CACTTGGACCAATCTATTGT+TGG + chr4_4:48371405-48371424 None:intergenic 40.0%
! CAACAATAGATTGGTCCAAG+TGG - chr4_4:48371403-48371422 Msa0684740:intron 40.0%
GTCTCAAGTCATTTACCACT+TGG + chr4_4:48371421-48371440 None:intergenic 40.0%
ACATCCAACCACATGCTTAA+GGG + chr4_4:48371443-48371462 None:intergenic 40.0%
AACATCCAACCACATGCTTA+AGG + chr4_4:48371444-48371463 None:intergenic 40.0%
GTGAATTCTCTCCTTTCAAC+TGG + chr4_4:48371498-48371517 None:intergenic 40.0%
ACTGTGACTAATCTTCTTCG+GGG + chr4_4:48371540-48371559 None:intergenic 40.0%
TAGTCACAGTTAAGCAGCAA+TGG - chr4_4:48371550-48371569 Msa0684740:intron 40.0%
TAGATGTCTATGTCAGACAC+AGG + chr4_4:48371930-48371949 None:intergenic 40.0%
GCTAAAGCACAGATACTTCT+CGG + chr4_4:48372212-48372231 None:intergenic 40.0%
CACTAGACCGTATTCAATCA+AGG + chr4_4:48372235-48372254 None:intergenic 40.0%
CACAAATCCGTCTTGTATTC+GGG + chr4_4:48372469-48372488 None:intergenic 40.0%
! GCAACTCTATCTGAAGCTTT+GGG + chr4_4:48372570-48372589 None:intergenic 40.0%
! AGCAACTCTATCTGAAGCTT+TGG + chr4_4:48372571-48372590 None:intergenic 40.0%
TTAATGCAGCTCAAGCTTCA+GGG - chr4_4:48372640-48372659 Msa0684740:intron 40.0%
! CTCTGTCCCTTACGATTTTA+AGG - chr4_4:48372759-48372778 Msa0684740:intron 40.0%
GATTATCACGGAGTAGACAT+TGG - chr4_4:48372935-48372954 Msa0684740:intron 40.0%
AGAGAGGAAGATACAAAGCT+CGG - chr4_4:48373025-48373044 Msa0684740:intron 40.0%
AACCTCTTCTGTACGACTAA+TGG + chr4_4:48373056-48373075 None:intergenic 40.0%
CATGTACGGAAAATTCAGAG+TGG + chr4_4:48373085-48373104 None:intergenic 40.0%
TTCGACACTTCAAACTCGAT+CGG + chr4_4:48373174-48373193 None:intergenic 40.0%
CAAATCAAAGAGTCCTTCCA+TGG - chr4_4:48373397-48373416 Msa0684740:intron 40.0%
TTGATGAAACCATCCATGGA+AGG + chr4_4:48373413-48373432 None:intergenic 40.0%
AGGAAGACATGTAGGAGAAT+AGG + chr4_4:48373507-48373526 None:intergenic 40.0%
TTCTCCTACATGTCTTCCTT+TGG - chr4_4:48373508-48373527 Msa0684740:intron 40.0%
TCTCCTACATGTCTTCCTTT+GGG - chr4_4:48373509-48373528 Msa0684740:intron 40.0%
CACTTGAAGTAGCCATTGTT+CGG + chr4_4:48373536-48373555 None:intergenic 40.0%
!! GTATTTGGTTCTCGTTAGGA+CGG + chr4_4:48373629-48373648 None:intergenic 40.0%
ACTTATTCATACCCAGTTGG+TGG + chr4_4:48373778-48373797 None:intergenic 40.0%
!!! ATGGTTTTAAACTGCAGTCC+GGG - chr4_4:48373798-48373817 Msa0684740:intron 40.0%
CGCTGCAAACCTTTATATTG+TGG - chr4_4:48373824-48373843 Msa0684740:CDS 40.0%
!! ACTGTATTGCTTTGGTCTTG+AGG - chr4_4:48374152-48374171 Msa0684740:CDS 40.0%
! ATCGGTCCATGGTCATGTTT+TGG + chr4_4:48369539-48369558 None:intergenic 45.0%
! TTGTGATGATGATCGGTCCA+TGG + chr4_4:48369550-48369569 None:intergenic 45.0%
!! AGGACTTTGAAGTCACGAGA+GGG + chr4_4:48369597-48369616 None:intergenic 45.0%
!! TAGGACTTTGAAGTCACGAG+AGG + chr4_4:48369598-48369617 None:intergenic 45.0%
GCTGCCTTTGTAGCATTCTA+TGG + chr4_4:48369622-48369641 None:intergenic 45.0%
TCAAAATCCGACGAATGGAC+CGG - chr4_4:48369642-48369661 Msa0684740:three_prime_UTR 45.0%
!! GTTGAAGAGTTTCGAGTTGG+TGG - chr4_4:48369690-48369709 Msa0684740:three_prime_UTR 45.0%
GATGAGTATGCTGAGTTGCA+AGG - chr4_4:48369840-48369859 Msa0684740:three_prime_UTR 45.0%
!!! GTTACACGGTTGGTCTTTTC+TGG - chr4_4:48370813-48370832 Msa0684740:CDS 45.0%
ATAAATACGGCTACAGCGAC+AGG - chr4_4:48370937-48370956 Msa0684740:intron 45.0%
ACTTGAGACCCTTAAGCATG+TGG - chr4_4:48371432-48371451 Msa0684740:intron 45.0%
GTGGTTGGATGTTCGATTTC+CGG - chr4_4:48371451-48371470 Msa0684740:intron 45.0%
ATCTTCTTCGGGGAACATGT+GGG + chr4_4:48371530-48371549 None:intergenic 45.0%
AATCTTCTTCGGGGAACATG+TGG + chr4_4:48371531-48371550 None:intergenic 45.0%
CGGGTTACTACGATATAGGT+AGG + chr4_4:48371582-48371601 None:intergenic 45.0%
! ACCCGAAAACGGTGTGATTT+TGG - chr4_4:48371597-48371616 Msa0684740:intron 45.0%
! GCCAAAATCACACCGTTTTC+GGG + chr4_4:48371601-48371620 None:intergenic 45.0%
! GGCCAAAATCACACCGTTTT+CGG + chr4_4:48371602-48371621 None:intergenic 45.0%
CTTGATCTATACACGGACAC+CGG - chr4_4:48372082-48372101 Msa0684740:intron 45.0%
TTAGGGTTTGTGTTCGTGTC+CGG + chr4_4:48372104-48372123 None:intergenic 45.0%
TTTCAGCTTCAAGGAGCAGT+AGG - chr4_4:48372421-48372440 Msa0684740:intron 45.0%
ACGGATTTGTGTCGTATCCA+TGG - chr4_4:48372478-48372497 Msa0684740:intron 45.0%
CGGATTTGTGTCGTATCCAT+GGG - chr4_4:48372479-48372498 Msa0684740:intron 45.0%
TGCTTCTCGCTACAATGATG+TGG - chr4_4:48372587-48372606 Msa0684740:intron 45.0%
ATTAAGCCATGCGTTTGCTC+GGG + chr4_4:48372625-48372644 None:intergenic 45.0%
CATTAAGCCATGCGTTTGCT+CGG + chr4_4:48372626-48372645 None:intergenic 45.0%
CTTAATGCAGCTCAAGCTTC+AGG - chr4_4:48372639-48372658 Msa0684740:intron 45.0%
TAATGCAGCTCAAGCTTCAG+GGG - chr4_4:48372641-48372660 Msa0684740:intron 45.0%
CTTCTTCCACGGTAAATGCA+GGG - chr4_4:48372861-48372880 Msa0684740:intron 45.0%
TAATGACCCTGCATTTACCG+TGG + chr4_4:48372870-48372889 None:intergenic 45.0%
TCGACTATGGTATGCTCCAA+TGG - chr4_4:48372973-48372992 Msa0684740:intron 45.0%
CGACTATGGTATGCTCCAAT+GGG - chr4_4:48372974-48372993 Msa0684740:intron 45.0%
ATTGAGAACTCTCCTCCCAT+TGG + chr4_4:48372992-48373011 None:intergenic 45.0%
TGCCATTAGTCGTACAGAAG+AGG - chr4_4:48373051-48373070 Msa0684740:intron 45.0%
ATTGCTTAGTCCTGAACGTG+TGG + chr4_4:48373325-48373344 None:intergenic 45.0%
TCAAAGAGTCCTTCCATGGA+TGG - chr4_4:48373401-48373420 Msa0684740:intron 45.0%
CCATGGATGGTTTCATCAAC+CGG - chr4_4:48373414-48373433 Msa0684740:intron 45.0%
GTCGTAACAACGAATTGCTC+CGG + chr4_4:48373436-48373455 None:intergenic 45.0%
GTCGATGTAAGGAGAGTTTC+TGG + chr4_4:48373473-48373492 None:intergenic 45.0%
TGTGCCAATTGAACTTGAGG+TGG + chr4_4:48373606-48373625 None:intergenic 45.0%
!! GGCTGTATTTGGTTCTCGTT+AGG + chr4_4:48373633-48373652 None:intergenic 45.0%
TCTGAATGAGACATCCCCAA+CGG + chr4_4:48373733-48373752 None:intergenic 45.0%
GGATGTCTCATTCAGATTCC+AGG - chr4_4:48373737-48373756 Msa0684740:intron 45.0%
TGGAGGACAATGAGAAATCC+TGG + chr4_4:48373758-48373777 None:intergenic 45.0%
!! TATTCATACCCAGTTGGTGG+AGG + chr4_4:48373775-48373794 None:intergenic 45.0%
TAAAGGTTTGCAGCGTATCC+CGG + chr4_4:48373819-48373838 None:intergenic 45.0%
TCATGCACAAGCTATCACCT+TGG - chr4_4:48373939-48373958 Msa0684740:CDS 45.0%
!!! AATTTTTATTTAATTTTTCT+TGG - chr4_4:48370891-48370910 Msa0684740:CDS 5.0%
!! AATTTATATAATTTATTAGA+AGG - chr4_4:48372270-48372289 Msa0684740:intron 5.0%
AGAAAGTGAGAGTGAGAGGG+TGG + chr4_4:48369460-48369479 None:intergenic 50.0%
GCAGCTCAAAATCCGACGAA+TGG - chr4_4:48369637-48369656 Msa0684740:three_prime_UTR 50.0%
ACCGGAGACATGCTTCAAAC+CGG - chr4_4:48369660-48369679 Msa0684740:three_prime_UTR 50.0%
!! ACCGGTTTGAAGCATGTCTC+CGG + chr4_4:48369664-48369683 None:intergenic 50.0%
GCTGAGTGCTTTCAACTCCA+AGG - chr4_4:48369954-48369973 Msa0684740:three_prime_UTR 50.0%
GAGACCCTTAAGCATGTGGT+TGG - chr4_4:48371436-48371455 Msa0684740:intron 50.0%
TCTTCTTCGGGGAACATGTG+GGG + chr4_4:48371529-48371548 None:intergenic 50.0%
CGGTGTCCGTGTATAGATCA+AGG + chr4_4:48372084-48372103 None:intergenic 50.0%
!! ATATGTGTCGGTGTCGACAC+TGG - chr4_4:48372174-48372193 Msa0684740:intron 50.0%
!! TATGTGTCGGTGTCGACACT+GGG - chr4_4:48372175-48372194 Msa0684740:intron 50.0%
AGCTTCAAGGAGCAGTAGGA+TGG - chr4_4:48372425-48372444 Msa0684740:intron 50.0%
TTGTGTCGTATCCATGGGAG+AGG - chr4_4:48372484-48372503 Msa0684740:intron 50.0%
TGGAGAGACAGCTTCTTCCA+CGG - chr4_4:48372850-48372869 Msa0684740:intron 50.0%
GCTTCTTCCACGGTAAATGC+AGG - chr4_4:48372860-48372879 Msa0684740:intron 50.0%
CTATGGTATGCTCCAATGGG+AGG - chr4_4:48372977-48372996 Msa0684740:intron 50.0%
!! CCGGTTGATGAAACCATCCA+TGG + chr4_4:48373417-48373436 None:intergenic 50.0%
GGTCCCAAAGGAAGACATGT+AGG + chr4_4:48373515-48373534 None:intergenic 50.0%
!! CTTCCTTTGGGACCGAACAA+TGG - chr4_4:48373521-48373540 Msa0684740:intron 50.0%
TAGCCATTGTTCGGTCCCAA+AGG + chr4_4:48373527-48373546 None:intergenic 50.0%
!! GGTGGTAATGGCAACACAGA+GGG + chr4_4:48373588-48373607 None:intergenic 50.0%
!! AGGTGGTAATGGCAACACAG+AGG + chr4_4:48373589-48373608 None:intergenic 50.0%
CGGTGTGCCAATTGAACTTG+AGG + chr4_4:48373609-48373628 None:intergenic 50.0%
!! ATCTTGAGAGAGGTGCCGTT+GGG - chr4_4:48373715-48373734 Msa0684740:intron 50.0%
TCTCATTGTCCTCCACCAAC+TGG - chr4_4:48373763-48373782 Msa0684740:intron 50.0%
CTCATTGTCCTCCACCAACT+GGG - chr4_4:48373764-48373783 Msa0684740:intron 50.0%
CATGTCTCCGGTCCATTCGT+CGG + chr4_4:48369652-48369671 None:intergenic 55.0%
ACGGTCTAGTGCCTATGCAC+TGG - chr4_4:48372244-48372263 Msa0684740:intron 55.0%
TGTCGTATCCATGGGAGAGG+AGG - chr4_4:48372487-48372506 Msa0684740:intron 55.0%
AGTTTACCGGCCACACGTTC+AGG - chr4_4:48373312-48373331 Msa0684740:intron 55.0%
CTTAGTCCTGAACGTGTGGC+CGG + chr4_4:48373321-48373340 None:intergenic 55.0%
CACAGAGGGAGACAAGGGTT+TGG + chr4_4:48373574-48373593 None:intergenic 55.0%
GGCAACACAGAGGGAGACAA+GGG + chr4_4:48373579-48373598 None:intergenic 55.0%
TGGCAACACAGAGGGAGACA+AGG + chr4_4:48373580-48373599 None:intergenic 55.0%
GCACCTCTCTCAAGATGCGT+CGG + chr4_4:48373711-48373730 None:intergenic 55.0%
!! CATCTTGAGAGAGGTGCCGT+TGG - chr4_4:48373714-48373733 Msa0684740:intron 55.0%
!! TCTTGAGAGAGGTGCCGTTG+GGG - chr4_4:48373716-48373735 Msa0684740:intron 55.0%
GTCACGAGAGGGTGAGTCTG+AGG + chr4_4:48369586-48369605 None:intergenic 60.0%
TCCATGGGAGAGGAGGATGC+AGG - chr4_4:48372494-48372513 Msa0684740:intron 60.0%
TCCTGCATCCTCCTCTCCCA+TGG + chr4_4:48372498-48372517 None:intergenic 60.0%
CACTAGCCCGAGCAAACGCA+TGG - chr4_4:48372616-48372635 Msa0684740:intron 60.0%
CAGCCGACGCATCTTGAGAG+AGG - chr4_4:48373705-48373724 Msa0684740:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 48369454 48374339 48369454 ID=Msa0684740;Name=Msa0684740
chr4_4 mRNA 48369454 48374339 48369454 ID=Msa0684740-mRNA-1;Parent=Msa0684740;Name=Msa0684740-mRNA-1;_AED=0.05;_eAED=0.05;_QI=89|1|1|1|1|1|4|548|489
chr4_4 exon 48369454 48370526 48369454 ID=Msa0684740-mRNA-1:exon:11974;Parent=Msa0684740-mRNA-1
chr4_4 exon 48370721 48370948 48370721 ID=Msa0684740-mRNA-1:exon:11973;Parent=Msa0684740-mRNA-1
chr4_4 exon 48371083 48371366 48371083 ID=Msa0684740-mRNA-1:exon:11972;Parent=Msa0684740-mRNA-1
chr4_4 exon 48373818 48374339 48373818 ID=Msa0684740-mRNA-1:exon:11971;Parent=Msa0684740-mRNA-1
chr4_4 five_prime_UTR 48374251 48374339 48374251 ID=Msa0684740-mRNA-1:five_prime_utr;Parent=Msa0684740-mRNA-1
chr4_4 CDS 48373818 48374250 48373818 ID=Msa0684740-mRNA-1:cds;Parent=Msa0684740-mRNA-1
chr4_4 CDS 48371083 48371366 48371083 ID=Msa0684740-mRNA-1:cds;Parent=Msa0684740-mRNA-1
chr4_4 CDS 48370721 48370948 48370721 ID=Msa0684740-mRNA-1:cds;Parent=Msa0684740-mRNA-1
chr4_4 CDS 48370002 48370526 48370002 ID=Msa0684740-mRNA-1:cds;Parent=Msa0684740-mRNA-1
chr4_4 three_prime_UTR 48369454 48370001 48369454 ID=Msa0684740-mRNA-1:three_prime_utr;Parent=Msa0684740-mRNA-1
Gene Sequence

>Msa0684740

ATGACCATGGACCGATCATCATCACAAAGCAGCTCAAAATCCTCAGACTCACCCTCTCGTGACTTCAAAGTCCTATCCATAGAATGCTACAAAGGCAGCTCAAAATCCGACGAATGGACCGGAGACATGCTTCAAACCGGTGACATAGTTGAAGAGTTTCGAGTTGGTGGTTCAGCTAACTCATTGATAAGGTTCAAAGCACCTTTCAAGAATGGAAAAAATGGTGTAAATAAGATTCTTCAAGAAGCATATAAGAAGAAAGATACTTCTATACTTGTTAGAGTTAGACGTGGAGTTGATGAGTATGCTGAGTTGCAAGGTTGTATTGTTCCTAATGAAAATAAGAAGAGTTATGTTCTTAGGGATATTGTTGATCCTAATTATCTTGTTGGGTTTTTGGATCGAACTGAAGCTGAGTGCTTTCAACTCCAAGCTTCAAGGAGCAGTAGGATGGTGAATGAGTTAACAAAAACCCGAATACAAGACGGATTTGTGTCGTATCCATGGGAGAGGAGGATGCAGGAGTTGTTATCAGTTCCAAATTCTAGCAACTTTCTTTCCATATTACTTCTTCCCAAAGCTTCAGATAGAGTTGCTTCTCGCTACAATGATGTGGAAGACACACTAGCCCGAGCAAACGCATGGCTTAATGCAGCTCAAGCTTCAGGGGTCCCTATTGTCTTTATGAACATTCAAACTGAGTCCTTACTTACAAAGATATCTGGAGAGACAGCTTCTTCCACGGTAAATGCAGGGTCATTATCCGACTTATGCAACATTGCAAATGCAAGTCTTTATGGTTTCGAAGATTATCACGGAGTAGACATTGGCGTTGTTAGAGCAATTCGACTATGGTATGCTCCAATGGGAGGAGAGTTCTCAATAGAGATAAAACTTAGAGAGGAAGATACAAAGCTCGGCTTTGCCATTAGTCGTACAGAAGAGGGTTTTATATTCATCTCATCATCAGTAATTGACGAAGGTAAAGAAAGTTTACCGGCCACACGTTCAGGACTAAGCAATCTATACAAACTAGCAACAGAAACTTCAAGGTTATTGGTAGTTTCAAGGCTTTCAAATCAAAGAGTCCTTCCATGGATGGTTTCATCAACCGGAGCAATTCGTTGTTACGACACTGTTTCATTGAGCCAGAAACTCTCCTTACATCGACACACTAAAGTTCCTATTCTCCTACATGTCTTCCTTTGGGACCGAACAATGGCTACTTCAAGTGCAGAAAGTACAAAATCCAAACCCTTGTCTCCCTCTGTGTTGCCATTACCACCTCAAGTTCAATTGGCACACCGTCCTAACGAGAACCAAATACAGCCATTATCATGTGAAGGATCTAATCCAACTGATATCAATATCAGTGATAGTTCTCAGCCGACGCATCTTGAGAGAGGTGCCGTTGGGGATGTCTCATTCAGATTCCAGGATTTCTCATTGTCCTCCACCAACTGGGTATGA
Protein sequence

>Msa0684740

MTMDRSSSQSSSKSSDSPSRDFKVLSIECYKGSSKSDEWTGDMLQTGDIVEEFRVGGSANSLIRFKAPFKNGKNGVNKILQEAYKKKDTSILVRVRRGVDEYAELQGCIVPNENKKSYVLRDIVDPNYLVGFLDRTEAECFQLQASRSSRMVNELTKTRIQDGFVSYPWERRMQELLSVPNSSNFLSILLLPKASDRVASRYNDVEDTLARANAWLNAAQASGVPIVFMNIQTESLLTKISGETASSTVNAGSLSDLCNIANASLYGFEDYHGVDIGVVRAIRLWYAPMGGEFSIEIKLREEDTKLGFAISRTEEGFIFISSSVIDEGKESLPATRSGLSNLYKLATETSRLLVVSRLSNQRVLPWMVSSTGAIRCYDTVSLSQKLSLHRHTKVPILLHVFLWDRTMATSSAESTKSKPLSPSVLPLPPQVQLAHRPNENQIQPLSCEGSNPTDINISDSSQPTHLERGAVGDVSFRFQDFSLSSTNWV*