AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0685210

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0685210 MtrunA17_Chr4g0033441 89.189 222 17 1 1 222 432 646 3.15e-139 404
Msa0685210 MtrunA17_Chr2g0329331 45.205 219 105 5 12 218 1291 1506 5.10e-48 169
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0685210 AT1G05950.1 36.025 161 90 5 42 193 441 597 5.98e-16 76.6
Msa0685210 AT1G05950.3 35.417 144 80 5 42 176 441 580 7.13e-12 64.7

Find 142 sgRNAs with CRISPR-Local

Find 567 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTGAATCTTGAAGACTTT+GGG 0.158603 4_4:-49320529 None:intergenic
CAGCTATCATTGACAGAAAA+AGG 0.162964 4_4:+49317378 Msa0685210:five_prime_UTR
TTTACCTGAGACAATGTTTA+AGG 0.186660 4_4:-49316053 None:intergenic
GGTTCTGAGGCCACCTTTAT+TGG 0.191132 4_4:+49317299 Msa0685210:five_prime_UTR
CCTTCTTGCTGTCGATTAAA+AGG 0.199021 4_4:-49317491 None:intergenic
TAACACTGATATTATGCTTT+TGG 0.222359 4_4:+49318149 Msa0685210:five_prime_UTR
AACTTGCAAAATTCGTTAAA+TGG 0.228149 4_4:-49317270 None:intergenic
CCGACAAATCTTTCCTCTTA+AGG 0.263512 4_4:-49322764 None:intergenic
TTATCTCACAGGGGATTTCT+AGG 0.264933 4_4:+49318903 Msa0685210:five_prime_UTR
TCTGTTGAGACTTCAGAATT+TGG 0.267901 4_4:-49317590 None:intergenic
TGGCTCTGGCAATGCTATTC+AGG 0.269758 4_4:+49319921 Msa0685210:five_prime_UTR
AAGGACAGAAACTTTCGATA+TGG 0.276928 4_4:-49317472 None:intergenic
GTTGAATAAACTGAGAAGTA+TGG 0.279829 4_4:+49324707 Msa0685210:CDS
ATGGGCCATCCCTCGATATT+AGG 0.291937 4_4:-49317453 None:intergenic
TAACTTATCGTTGTACTCTA+TGG 0.296874 4_4:+49324840 Msa0685210:three_prime_UTR
ATCACCAATGCTATACAATT+TGG 0.297771 4_4:+49319853 Msa0685210:intron
TGTGAGATAACTTCAGAATA+AGG 0.310344 4_4:-49318890 None:intergenic
CTGGCAATGCTATTCAGGTC+TGG 0.326172 4_4:+49319926 Msa0685210:five_prime_UTR
AATGGCAGATATTCTAGTTC+TGG 0.328231 4_4:-49317252 None:intergenic
CGACAAATCTTTCCTCTTAA+GGG 0.330750 4_4:-49322763 None:intergenic
GCATAGCTTGCAAGGTCCTT+TGG 0.341619 4_4:+49318808 Msa0685210:intron
TCCAACTGAGGATGCAATTC+AGG 0.359131 4_4:+49316565 Msa0685210:five_prime_UTR
TCTTTGAATCTTGAAGACTT+TGG 0.360035 4_4:-49320530 None:intergenic
ATTTGTTCACATCCATTTCA+TGG 0.360457 4_4:-49319789 None:intergenic
ATCAATGATAGAATGCATTA+TGG 0.363892 4_4:+49322680 Msa0685210:CDS
TCAGGTGTTTCTACAACATT+TGG 0.364760 4_4:+49316583 Msa0685210:five_prime_UTR
ATTTCAAACTCTGTCACTTC+AGG 0.385082 4_4:-49319703 None:intergenic
GTATATGTCATGAAAACAAT+TGG 0.391171 4_4:+49323822 Msa0685210:CDS
TGCAAGGTCCTTTGGTCAAA+AGG 0.391451 4_4:+49318816 Msa0685210:five_prime_UTR
CATGCTTCTGTAGTGGCTCT+TGG 0.392857 4_4:+49324766 Msa0685210:three_prime_UTR
TTTACAAGATTTGAGGGTAG+TGG 0.401313 4_4:+49319657 Msa0685210:five_prime_UTR
AATTTCATATATGCCAATAA+AGG 0.402771 4_4:-49317312 None:intergenic
TCAAGCTGTATTGCAGTGAT+TGG 0.404034 4_4:+49324899 Msa0685210:three_prime_UTR
CCTTCAGCAGCGCAAGATAG+AGG 0.405235 4_4:+49321233 Msa0685210:CDS
ACCTTCGAACTGAACCTGTT+TGG 0.407527 4_4:-49316025 None:intergenic
TTTATCTTGCAGGATCTAGA+TGG 0.422322 4_4:+49323800 Msa0685210:intron
TAACCTCCTGATTGATTGAC+TGG 0.422854 4_4:-49318239 None:intergenic
TTGAGACTTCAGAATTTGGC+TGG 0.424394 4_4:-49317586 None:intergenic
TATATGCTTCCAACATTACT+TGG 0.425020 4_4:-49324739 None:intergenic
TGGCAATGCTATTCAGGTCT+GGG 0.425185 4_4:+49319927 Msa0685210:five_prime_UTR
CTGAATGTCATTGCTTTGAC+AGG 0.429541 4_4:+49320341 Msa0685210:five_prime_UTR
CAAATTCTGAGAATGTTAAC+TGG 0.435144 4_4:+49321279 Msa0685210:CDS
CATATAGTTTACAAGATTTG+AGG 0.436673 4_4:+49319650 Msa0685210:five_prime_UTR
ACAGCAAGTAATTGCCAAAC+AGG 0.437795 4_4:+49316661 Msa0685210:five_prime_UTR
CTCTATCTTGCGCTGCTGAA+GGG 0.440040 4_4:-49321232 None:intergenic
CCTCTATCTTGCGCTGCTGA+AGG 0.443269 4_4:-49321233 None:intergenic
AATAGCATTGCCAGAGCCAT+TGG 0.446449 4_4:-49319917 None:intergenic
AACATTGAAGCCAACCAAAC+AGG 0.450094 4_4:+49316011 Msa0685210:five_prime_UTR
TATCATGGAGACCCATGAAA+TGG 0.452413 4_4:+49319777 Msa0685210:five_prime_UTR
AAGCAGAAAACACACCTGTT+TGG 0.458431 4_4:-49316675 None:intergenic
CCTTTCAATTACATCCTTGA+GGG 0.460597 4_4:-49318271 None:intergenic
AGGACAGAAACTTTCGATAT+GGG 0.463069 4_4:-49317471 None:intergenic
GGTTGAGAAATATGATAAGT+TGG 0.466137 4_4:-49323851 None:intergenic
TTTCAAACTCTGTCACTTCA+GGG 0.468554 4_4:-49319702 None:intergenic
TATACAATTTGGTGAACATC+AGG 0.472255 4_4:+49319864 Msa0685210:five_prime_UTR
GACAAATCTTTCCTCTTAAG+GGG 0.476888 4_4:-49322762 None:intergenic
TCGAACTGAACCTGTTTGGT+TGG 0.478526 4_4:-49316021 None:intergenic
GTTCCATCACTGAGGAGGTA+TGG 0.478798 4_4:+49317535 Msa0685210:five_prime_UTR
TTGAATAAACTGAGAAGTAT+GGG 0.480086 4_4:+49324708 Msa0685210:CDS
TTCACCAAATTGTATAGCAT+TGG 0.480139 4_4:-49319857 None:intergenic
ACAAGGATGCTCAACGGTAA+AGG 0.491827 4_4:+49320381 Msa0685210:CDS
TATCTTCTCTAATAAGAAAG+AGG 0.494834 4_4:+49320571 Msa0685210:CDS
CAGTTTAAATCCAATGGCTC+TGG 0.497458 4_4:+49319907 Msa0685210:five_prime_UTR
TTATTCTGAAGTTATCTCAC+AGG 0.498048 4_4:+49318892 Msa0685210:five_prime_UTR
GTGCTCCCAGTCAATCAATC+AGG 0.501419 4_4:+49318233 Msa0685210:five_prime_UTR
TTTGAATCTTGAAGACTTTG+GGG 0.502496 4_4:-49320528 None:intergenic
CAAACCTTAAACATTGTCTC+AGG 0.506427 4_4:+49316049 Msa0685210:five_prime_UTR
ATATAGTTTACAAGATTTGA+GGG 0.508018 4_4:+49319651 Msa0685210:five_prime_UTR
TTGGATTTAAACTGCACAGA+TGG 0.508608 4_4:-49319898 None:intergenic
CCTTAAGAGGAAAGATTTGT+CGG 0.510361 4_4:+49322764 Msa0685210:CDS
GACTATTTGTAGAAAGTAGT+AGG 0.510544 4_4:+49319949 Msa0685210:five_prime_UTR
TATCATATTTCTCAACCAAA+CGG 0.515785 4_4:+49323857 Msa0685210:CDS
TTTGTTCACATCCATTTCAT+GGG 0.518510 4_4:-49319788 None:intergenic
TTCTCTTGCTTCAAGAGGAG+TGG 0.519482 4_4:-49324667 None:intergenic
GTTTATATTAACAGTTACAT+TGG 0.520185 4_4:-49324610 None:intergenic
TCTCTTGCTTCAAGAGGAGT+GGG 0.522171 4_4:-49324666 None:intergenic
CATGAAGTCATGCTGAGAAC+TGG 0.522441 4_4:-49324929 None:intergenic
CCCTCAAGGATGTAATTGAA+AGG 0.522915 4_4:+49318271 Msa0685210:five_prime_UTR
TCAAAAGGAGTTCTAGCAGT+TGG 0.526233 4_4:+49318831 Msa0685210:five_prime_UTR
GAATATTAACCAAGTAATGT+TGG 0.531034 4_4:+49324730 Msa0685210:exon
TATATGTCATGAAAACAATT+GGG 0.531779 4_4:+49323823 Msa0685210:CDS
GAGTTAGAATGATTTGAACT+TGG 0.533019 4_4:-49320492 None:intergenic
CTATTCTCAAAGCAAAGAAA+AGG 0.537022 4_4:+49318185 Msa0685210:five_prime_UTR
GAGAAATATGATAAGTTGGT+AGG 0.544080 4_4:-49323847 None:intergenic
AAGTTTAAGTGTTCCGATGA+GGG 0.544204 4_4:+49324633 Msa0685210:CDS
GTAATAAATCAAGAAGGGAC+AGG 0.545367 4_4:+49322723 Msa0685210:CDS
ACCTGAATTGCATCCTCAGT+TGG 0.546001 4_4:-49316566 None:intergenic
TAGACCATGTGATTCTATCA+TGG 0.549522 4_4:+49319762 Msa0685210:five_prime_UTR
GCTGATTCTCTTGCTTCAAG+AGG 0.555429 4_4:-49324672 None:intergenic
GCAAGTTGATTGTGGTTCTG+AGG 0.556738 4_4:+49317286 Msa0685210:five_prime_UTR
ACCTTTCAATTACATCCTTG+AGG 0.562218 4_4:-49318272 None:intergenic
AATAAGAAAGAGGAATGAGC+TGG 0.567307 4_4:+49320581 Msa0685210:CDS
TACTTGCTGTTGAGAAGCTG+TGG 0.567536 4_4:-49316648 None:intergenic
ACCAAACAGGTTCAGTTCGA+AGG 0.570210 4_4:+49316024 Msa0685210:five_prime_UTR
GGAAGGCTGCAATGATGTAT+CGG 0.573097 4_4:+49322701 Msa0685210:CDS
CTATGAAGATTGACTCGACA+AGG 0.577961 4_4:+49320364 Msa0685210:exon
CTTCAGCAGCGCAAGATAGA+GGG 0.579807 4_4:+49321234 Msa0685210:CDS
TGTTGTACAACTACTACCAC+AGG 0.579811 4_4:+49317220 Msa0685210:five_prime_UTR
ACATGGAAGTAAACCACCAC+AGG 0.580384 4_4:-49318863 None:intergenic
CTTCAGAATAAGGAAGCACA+TGG 0.581249 4_4:-49318880 None:intergenic
GGACCATACCTCCTCAGTGA+TGG 0.581962 4_4:-49317538 None:intergenic
TATTCTGAAGTTATCTCACA+GGG 0.582725 4_4:+49318893 Msa0685210:five_prime_UTR
ATGATAGAATGCATTATGGA+AGG 0.584757 4_4:+49322684 Msa0685210:CDS
GGTTATTAAAGTTCCCCTCA+AGG 0.585039 4_4:+49318257 Msa0685210:five_prime_UTR
TCTGTGCAGTTTAAATCCAA+TGG 0.586104 4_4:+49319901 Msa0685210:five_prime_UTR
TTCATATATGCCAATAAAGG+TGG 0.587022 4_4:-49317309 None:intergenic
GTATCGGTAATAAATCAAGA+AGG 0.589608 4_4:+49322717 Msa0685210:CDS
GTTTGGTTCCATCACTGAGG+AGG 0.590291 4_4:+49317530 Msa0685210:five_prime_UTR
TGACTAATTCGCATTTCACA+TGG 0.590700 4_4:-49324875 None:intergenic
GTTCTGGATGCTGTTTCCTG+TGG 0.591655 4_4:-49317236 None:intergenic
CAAGTTTAAGTGTTCCGATG+AGG 0.593108 4_4:+49324632 Msa0685210:CDS
TCTGCTGTGAAGGAAGCTGC+AGG 0.595596 4_4:+49317707 Msa0685210:five_prime_UTR
CTTTCAATTACATCCTTGAG+GGG 0.598422 4_4:-49318270 None:intergenic
GGGACACAAGTTACCCTCAT+CGG 0.598530 4_4:-49324646 None:intergenic
AAAGAATGTTCCTAATATCG+AGG 0.599060 4_4:+49317443 Msa0685210:five_prime_UTR
CACTGAGGAGGTATGGTCCG+TGG 0.602860 4_4:+49317542 Msa0685210:five_prime_UTR
TGAAGTAGAGCTCATAGATG+TGG 0.603411 4_4:+49317350 Msa0685210:five_prime_UTR
AAGAATGTTCCTAATATCGA+GGG 0.604182 4_4:+49317444 Msa0685210:five_prime_UTR
AGTCGGGTATTCTGCTGTGA+AGG 0.608334 4_4:+49317697 Msa0685210:five_prime_UTR
TTGTTAATATTCTACACTAG+AGG 0.608919 4_4:-49324795 None:intergenic
ATAAATGCATGCTTCTGTAG+TGG 0.609840 4_4:+49324759 Msa0685210:three_prime_UTR
TATCGGTAATAAATCAAGAA+GGG 0.616879 4_4:+49322718 Msa0685210:CDS
AGACTTCAGAATTTGGCTGG+AGG 0.621298 4_4:-49317583 None:intergenic
TTGGACGATCACTCCTGTGG+TGG 0.625303 4_4:+49318850 Msa0685210:five_prime_UTR
AACCTCCTGATTGATTGACT+GGG 0.625426 4_4:-49318238 None:intergenic
CATGAGCAGAAAGAGAACAA+TGG 0.627353 4_4:+49319727 Msa0685210:five_prime_UTR
ATAAATCAAGAAGGGACAGG+TGG 0.630964 4_4:+49322726 Msa0685210:CDS
GGAGGCACAAAGTTCATGCA+AGG 0.632569 4_4:+49322785 Msa0685210:CDS
ACTTGCTGTTGAGAAGCTGT+GGG 0.635516 4_4:-49316647 None:intergenic
ACAAATCTTTCCTCTTAAGG+GGG 0.637703 4_4:-49322761 None:intergenic
CTCCCAGTCAATCAATCAGG+AGG 0.644545 4_4:+49318236 Msa0685210:five_prime_UTR
GACTCGACAAGGATGCTCAA+CGG 0.644800 4_4:+49320375 Msa0685210:CDS
ACAATATGTAGAAAACTACA+TGG 0.650694 4_4:+49324814 Msa0685210:three_prime_UTR
GCTGTTTGGTTCCATCACTG+AGG 0.651655 4_4:+49317527 Msa0685210:five_prime_UTR
ATGTTCCTAATATCGAGGGA+TGG 0.652051 4_4:+49317448 Msa0685210:five_prime_UTR
AGGATGCTCAACGGTAAAGG+CGG 0.660364 4_4:+49320384 Msa0685210:CDS
CAGTTGGACGATCACTCCTG+TGG 0.662817 4_4:+49318847 Msa0685210:five_prime_UTR
CATTGGATAGAACAACAACA+TGG 0.665876 4_4:+49316523 Msa0685210:five_prime_UTR
TAAGAGGAAAGATTTGTCGG+AGG 0.692718 4_4:+49322767 Msa0685210:CDS
ATCAGATGTGTGTCCAACTG+AGG 0.695565 4_4:+49316553 Msa0685210:five_prime_UTR
GTCTCCATGATAGAATCACA+TGG 0.715164 4_4:-49319766 None:intergenic
ATTCTGAAGTTATCTCACAG+GGG 0.731508 4_4:+49318894 Msa0685210:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTATTTTAAAAAATAAAA+CGG - chr4_4:49318517-49318536 None:intergenic 0.0%
!!! AAAATAAAATTTTATTCAGA+GGG - chr4_4:49317990-49318009 None:intergenic 10.0%
!!! TTTTAAAATAATTTTGACAA+AGG + chr4_4:49318524-49318543 Msa0685210:intron 10.0%
!! ATATTCTTATATGTAAAAAA+TGG - chr4_4:49320991-49321010 None:intergenic 10.0%
!!! AATTGTTATTTTAAATTTCT+TGG + chr4_4:49322948-49322967 Msa0685210:intron 10.0%
!! TCAAGTTTAAAAAATATTAT+TGG + chr4_4:49323950-49323969 Msa0685210:intron 10.0%
!! ATAATAATGTGAATTCTATT+TGG + chr4_4:49316214-49316233 Msa0685210:intron 15.0%
!! TAATAATGTGAATTCTATTT+GGG + chr4_4:49316215-49316234 Msa0685210:intron 15.0%
!!! ACTTTTTTTTTCTTTTCATT+TGG - chr4_4:49317063-49317082 None:intergenic 15.0%
!! ATATATGCTTATTGATATAT+AGG + chr4_4:49317115-49317134 Msa0685210:intron 15.0%
!! TATATGCTTATTGATATATA+GGG + chr4_4:49317116-49317135 Msa0685210:intron 15.0%
!! AAACAAAAAATACATACAAA+AGG + chr4_4:49317612-49317631 Msa0685210:five_prime_UTR 15.0%
!!! TCTTTTCGTAATAATAAAAA+TGG - chr4_4:49317736-49317755 None:intergenic 15.0%
!!! ATCACTTGTTAAAATAAATT+GGG - chr4_4:49317857-49317876 None:intergenic 15.0%
!!! GAAAATAAAATTTTATTCAG+AGG - chr4_4:49317991-49318010 None:intergenic 15.0%
!!! ATTTTAAAAAATAAAACGGA+AGG - chr4_4:49318513-49318532 None:intergenic 15.0%
!!! ATAAACAAAGTTTTTCAAAA+AGG - chr4_4:49318942-49318961 None:intergenic 15.0%
!!! ACATTTTTAAATACAAATTG+TGG + chr4_4:49319230-49319249 Msa0685210:intron 15.0%
!!! CATTTTTAAATACAAATTGT+GGG + chr4_4:49319231-49319250 Msa0685210:intron 15.0%
!! TTGTCAAAGAAAATATAAAA+TGG - chr4_4:49319563-49319582 None:intergenic 15.0%
!! ATGAACAATTAGTTATATAT+GGG - chr4_4:49320894-49320913 None:intergenic 15.0%
!! TATGAACAATTAGTTATATA+TGG - chr4_4:49320895-49320914 None:intergenic 15.0%
!! TGACTATAATATTCTTATAT+GGG - chr4_4:49321043-49321062 None:intergenic 15.0%
!! TTGACTATAATATTCTTATA+TGG - chr4_4:49321044-49321063 None:intergenic 15.0%
!! ATATTATAGTCAATATTCTT+TGG + chr4_4:49321051-49321070 Msa0685210:intron 15.0%
!!! ATTATATTAACAAAAGCATA+TGG + chr4_4:49323524-49323543 Msa0685210:intron 15.0%
!!! AAAACATACTTTAAGAAACA+TGG - chr4_4:49316106-49316125 None:intergenic 20.0%
!!! TAGTTTTATAACTTGTTTAG+AGG + chr4_4:49316780-49316799 Msa0685210:intron 20.0%
!! TAGTTACAATTTGTAATGTA+AGG - chr4_4:49316849-49316868 None:intergenic 20.0%
!! AATTTCATATATGCCAATAA+AGG - chr4_4:49317315-49317334 None:intergenic 20.0%
!! GTTTGTATTTATGCATAAAT+TGG + chr4_4:49317793-49317812 Msa0685210:intron 20.0%
!!! CATCACTTGTTAAAATAAAT+TGG - chr4_4:49317858-49317877 None:intergenic 20.0%
!! ATAATGATACATTAACTAAC+AGG - chr4_4:49318052-49318071 None:intergenic 20.0%
!!! CAAAGCTTTTTAAATAATTG+AGG - chr4_4:49319269-49319288 None:intergenic 20.0%
!! CAATTATTTAAAAAGCTTTG+TGG + chr4_4:49319269-49319288 Msa0685210:intron 20.0%
!! TAGAGAAACATTATGTATAA+TGG - chr4_4:49319530-49319549 None:intergenic 20.0%
!!! TTGTGTAATATATTTTACCT+TGG + chr4_4:49319613-49319632 Msa0685210:intron 20.0%
!! ATATAGTTTACAAGATTTGA+GGG + chr4_4:49319651-49319670 Msa0685210:five_prime_UTR 20.0%
!!! CATTTTTCTTTATTTTGAGA+TGG - chr4_4:49319826-49319845 None:intergenic 20.0%
!!! ATTTTTCGGATAGATATTAA+GGG - chr4_4:49320070-49320089 None:intergenic 20.0%
!!! AATTTTTCGGATAGATATTA+AGG - chr4_4:49320071-49320090 None:intergenic 20.0%
!!! GATCTTTTTAAAGATTTCAA+AGG + chr4_4:49320185-49320204 Msa0685210:intron 20.0%
!! TAGACTTATTTATATCATTC+AGG + chr4_4:49321209-49321228 Msa0685210:intron 20.0%
!!! AACTCAACTATTTTCTTTTT+GGG + chr4_4:49321627-49321646 Msa0685210:intron 20.0%
!!! TTTGTTTTTCACTCTTTAAT+TGG - chr4_4:49321666-49321685 None:intergenic 20.0%
!! TTAAAGAATATGAATGTACA+TGG + chr4_4:49322419-49322438 Msa0685210:intron 20.0%
!! TTTCTTATGACACAATTAAA+GGG + chr4_4:49323287-49323306 Msa0685210:intron 20.0%
!!! GAAATTAATTTTAGTTGTCT+GGG - chr4_4:49323358-49323377 None:intergenic 20.0%
!!! AGAAATTAATTTTAGTTGTC+TGG - chr4_4:49323359-49323378 None:intergenic 20.0%
!!! TAAAAGATTTTTTTTCTTCG+AGG + chr4_4:49323427-49323446 Msa0685210:intron 20.0%
!!! AAAAGATTTTTTTTCTTCGA+GGG + chr4_4:49323428-49323447 Msa0685210:intron 20.0%
!!! GACATATTACTTATATTTTG+TGG + chr4_4:49323607-49323626 Msa0685210:intron 20.0%
!! AAAATATATATACCCGAAAA+CGG - chr4_4:49323651-49323670 None:intergenic 20.0%
!!! TTTTCGGGTATATATATTTT+GGG + chr4_4:49323651-49323670 Msa0685210:intron 20.0%
!!! GTTGTTTTCAAAAAAGATAA+AGG - chr4_4:49323766-49323785 None:intergenic 20.0%
!! TATATGTCATGAAAACAATT+GGG + chr4_4:49323823-49323842 Msa0685210:CDS 20.0%
!! ATTAACCACATTTAAATTTG+TGG + chr4_4:49324196-49324215 Msa0685210:intron 20.0%
!! ATTAACCACAAATTTAAATG+TGG - chr4_4:49324204-49324223 None:intergenic 20.0%
!! ATAATTAACCACTTATTTGA+CGG + chr4_4:49324268-49324287 Msa0685210:intron 20.0%
!! TAAAGAATCAGACAAATAAA+AGG - chr4_4:49324348-49324367 None:intergenic 20.0%
!! TTAAGTATCTTAAGGTAAAT+AGG - chr4_4:49324503-49324522 None:intergenic 20.0%
!!! TAGACATTTTAAGTATCTTA+AGG - chr4_4:49324511-49324530 None:intergenic 20.0%
!! GTTTATATTAACAGTTACAT+TGG - chr4_4:49324613-49324632 None:intergenic 20.0%
!! ATTCCTAGAAAAAATTAACT+TGG + chr4_4:49324971-49324990 Msa0685210:three_prime_UTR 20.0%
!!! ATACCAAGTTAATTTTTTCT+AGG - chr4_4:49324977-49324996 None:intergenic 20.0%
!! ACAATTTGTGCATTTTTCTA+TGG + chr4_4:49316342-49316361 Msa0685210:intron 25.0%
!!! TTTGATGTGTGTGTTTTATT+GGG + chr4_4:49316448-49316467 Msa0685210:intron 25.0%
!!! TTTTAGGTTTTCAGAATCAT+TGG + chr4_4:49316506-49316525 Msa0685210:intron 25.0%
!! AGGATTGTTTGAAATGTTTA+GGG + chr4_4:49316800-49316819 Msa0685210:intron 25.0%
!!! ACAACATTTGATTAAGTTGA+TGG + chr4_4:49317009-49317028 Msa0685210:intron 25.0%
!!! TTTTCATTTGGTGATGATAA+TGG - chr4_4:49317051-49317070 None:intergenic 25.0%
! AACTTGCAAAATTCGTTAAA+TGG - chr4_4:49317273-49317292 None:intergenic 25.0%
! CTTGTTAAAATAAATTGGGA+AGG - chr4_4:49317853-49317872 None:intergenic 25.0%
! AACAATAACCTCAAATAGAT+TGG - chr4_4:49317940-49317959 None:intergenic 25.0%
!! TAACACTGATATTATGCTTT+TGG + chr4_4:49318149-49318168 Msa0685210:five_prime_UTR 25.0%
!! AACACTGATATTATGCTTTT+GGG + chr4_4:49318150-49318169 Msa0685210:five_prime_UTR 25.0%
!!! AATTGTTATCGTTTTGCTAT+TGG + chr4_4:49318302-49318321 Msa0685210:intron 25.0%
! ATAATAAGATTGCAACATAC+CGG - chr4_4:49318573-49318592 None:intergenic 25.0%
! ATGTTGCAATCTTATTATGA+AGG + chr4_4:49318575-49318594 Msa0685210:intron 25.0%
! TCAGATTATTCCAAAGTATA+GGG - chr4_4:49318711-49318730 None:intergenic 25.0%
! ATCAGATTATTCCAAAGTAT+AGG - chr4_4:49318712-49318731 None:intergenic 25.0%
! TGATAATCACAGAAGTAAAA+CGG + chr4_4:49318728-49318747 Msa0685210:intron 25.0%
! AAACGGATAGTTAATAAACT+TGG + chr4_4:49318745-49318764 Msa0685210:intron 25.0%
! AACTAAAATAGCATCACTTA+TGG - chr4_4:49318996-49319015 None:intergenic 25.0%
!! GAAGTGCTTATAATTTACAA+CGG - chr4_4:49319159-49319178 None:intergenic 25.0%
!!! CTTCTAAAATACTGATATCA+TGG + chr4_4:49319175-49319194 Msa0685210:intron 25.0%
! GAATCTCTTTAAATACTGTA+GGG - chr4_4:49319325-49319344 None:intergenic 25.0%
! AGAATCTCTTTAAATACTGT+AGG - chr4_4:49319326-49319345 None:intergenic 25.0%
!!! TATGTATAATGGCTTTGATA+CGG - chr4_4:49319519-49319538 None:intergenic 25.0%
! CATATAGTTTACAAGATTTG+AGG + chr4_4:49319650-49319669 Msa0685210:five_prime_UTR 25.0%
!! CAGTCTAAAACTGTTTATAT+AGG + chr4_4:49319997-49320016 Msa0685210:intron 25.0%
!!! TTTTTCGGATAGATATTAAG+GGG - chr4_4:49320069-49320088 None:intergenic 25.0%
!! ATCTATCCGAAAAATTCTTT+TGG + chr4_4:49320075-49320094 Msa0685210:intron 25.0%
!! TGCATACCAAAAGAATTTTT+CGG - chr4_4:49320084-49320103 None:intergenic 25.0%
!! AAAAATTCTTTTGGTATGCA+TGG + chr4_4:49320084-49320103 Msa0685210:intron 25.0%
! TAAATGTTTCGATGAAGTAT+AGG - chr4_4:49320125-49320144 None:intergenic 25.0%
! TTACGATGAGATTATAAACA+TGG - chr4_4:49320265-49320284 None:intergenic 25.0%
!!! TCTTTTTCATATGAGGTATT+TGG - chr4_4:49320453-49320472 None:intergenic 25.0%
!!! TTTTGTGTCTTTTTCATATG+AGG - chr4_4:49320460-49320479 None:intergenic 25.0%
! TCATATGAAAAAGACACAAA+AGG + chr4_4:49320459-49320478 Msa0685210:CDS 25.0%
! TATCTTCTCTAATAAGAAAG+AGG + chr4_4:49320571-49320590 Msa0685210:CDS 25.0%
! AATACGAATATACTTTGTTG+TGG + chr4_4:49320691-49320710 Msa0685210:intron 25.0%
! TCTGTACATTATTGACAAAA+AGG + chr4_4:49320771-49320790 Msa0685210:intron 25.0%
! TTACATATAAGAATATCGAG+TGG + chr4_4:49320995-49321014 Msa0685210:intron 25.0%
!!! GAGTGCAAATATAGTTTTTT+TGG - chr4_4:49321185-49321204 None:intergenic 25.0%
!!! TTTTTTCCATGAAGAATGTA+TGG + chr4_4:49321589-49321608 Msa0685210:intron 25.0%
!! TTTTTCCATGAAGAATGTAT+GGG + chr4_4:49321590-49321609 Msa0685210:intron 25.0%
!! GAACTCAACTATTTTCTTTT+TGG + chr4_4:49321626-49321645 Msa0685210:intron 25.0%
!! ACTCAACTATTTTCTTTTTG+GGG + chr4_4:49321628-49321647 Msa0685210:intron 25.0%
! CATGTCATTAAAATGTTCTT+GGG - chr4_4:49321717-49321736 None:intergenic 25.0%
! ACATGTCATTAAAATGTTCT+TGG - chr4_4:49321718-49321737 None:intergenic 25.0%
!! TTAAAGAGAGTAAAGGTTTT+TGG + chr4_4:49321811-49321830 Msa0685210:intron 25.0%
!! TGGTAATGACATAATGTAAA+TGG + chr4_4:49322306-49322325 Msa0685210:intron 25.0%
! ATTAGATGATATACCTATTG+TGG + chr4_4:49322329-49322348 Msa0685210:intron 25.0%
! ATGGTTATTCATCTATAACT+AGG - chr4_4:49322608-49322627 None:intergenic 25.0%
! AAGACACAAAATAAACTCAA+TGG - chr4_4:49322627-49322646 None:intergenic 25.0%
! ATCAATGATAGAATGCATTA+TGG + chr4_4:49322680-49322699 Msa0685210:CDS 25.0%
! TATCGGTAATAAATCAAGAA+GGG + chr4_4:49322718-49322737 Msa0685210:CDS 25.0%
! TCTGTCATACATCATATATT+AGG + chr4_4:49322891-49322910 Msa0685210:intron 25.0%
! CTGTCATACATCATATATTA+GGG + chr4_4:49322892-49322911 Msa0685210:intron 25.0%
! ACCTAATTAATAGATGCATA+TGG + chr4_4:49323058-49323077 Msa0685210:intron 25.0%
! TCCATATGCATCTATTAATT+AGG - chr4_4:49323062-49323081 None:intergenic 25.0%
! TTCAGCTAATAGTGAAAAAA+TGG - chr4_4:49323106-49323125 None:intergenic 25.0%
! TGGATTCCAAATAAATTCAT+GGG - chr4_4:49323141-49323160 None:intergenic 25.0%
! ATGGATTCCAAATAAATTCA+TGG - chr4_4:49323142-49323161 None:intergenic 25.0%
!! ACTATTGGTTGAAATTTATG+TGG - chr4_4:49323182-49323201 None:intergenic 25.0%
! GATTATTTATCAATGCATCT+AGG - chr4_4:49323235-49323254 None:intergenic 25.0%
! GTTTCTTATGACACAATTAA+AGG + chr4_4:49323286-49323305 Msa0685210:intron 25.0%
! TTCTTATGACACAATTAAAG+GGG + chr4_4:49323288-49323307 Msa0685210:intron 25.0%
! TCATAATATCTATCACTCAA+AGG - chr4_4:49323405-49323424 None:intergenic 25.0%
!!! AAAGATTTTTTTTCTTCGAG+GGG + chr4_4:49323429-49323448 Msa0685210:intron 25.0%
!! ATATTAACAAAAGCATATGG+TGG + chr4_4:49323527-49323546 Msa0685210:intron 25.0%
! ATAACAAGAACTATGTTTGA+AGG - chr4_4:49323575-49323594 None:intergenic 25.0%
!!! GTTTTCGGGTATATATATTT+TGG + chr4_4:49323650-49323669 Msa0685210:intron 25.0%
!!! TGTTCTGGCATTTTATTTTA+TGG - chr4_4:49323712-49323731 None:intergenic 25.0%
! AAAAAGATAAAGGAGATGAT+TGG - chr4_4:49323756-49323775 None:intergenic 25.0%
! GTATATGTCATGAAAACAAT+TGG + chr4_4:49323822-49323841 Msa0685210:CDS 25.0%
! TATCATATTTCTCAACCAAA+CGG + chr4_4:49323857-49323876 Msa0685210:CDS 25.0%
! AAGTTTATTGAGAAATCCAA+AGG + chr4_4:49323916-49323935 Msa0685210:intron 25.0%
! AAATGTGGTTAATAATTCTC+AGG - chr4_4:49324189-49324208 None:intergenic 25.0%
! AATTTGTGGTTAATGACTTT+CGG + chr4_4:49324210-49324229 Msa0685210:intron 25.0%
!! GGTTAATTATTTTCAGTAGA+TGG - chr4_4:49324258-49324277 None:intergenic 25.0%
!! TTGATTGATGTTTCTTTTGA+AGG + chr4_4:49324576-49324595 Msa0685210:intron 25.0%
!! TTGAATAAACTGAGAAGTAT+GGG + chr4_4:49324708-49324727 Msa0685210:CDS 25.0%
! GAATATTAACCAAGTAATGT+TGG + chr4_4:49324730-49324749 Msa0685210:exon 25.0%
! TTGTTAATATTCTACACTAG+AGG - chr4_4:49324798-49324817 None:intergenic 25.0%
! ACAATATGTAGAAAACTACA+TGG + chr4_4:49324814-49324833 Msa0685210:three_prime_UTR 25.0%
TTTACCTGAGACAATGTTTA+AGG - chr4_4:49316056-49316075 None:intergenic 30.0%
TGGAAAAGTGACAGAAATTA+AGG - chr4_4:49316079-49316098 None:intergenic 30.0%
! ACTTTAAGAAACATGGATGT+TGG - chr4_4:49316099-49316118 None:intergenic 30.0%
!! TTAATTTTGTATTGACCCTC+TGG + chr4_4:49316254-49316273 Msa0685210:intron 30.0%
!! TTGAGAATGTTGATAGTTTG+TGG + chr4_4:49316400-49316419 Msa0685210:intron 30.0%
! CTTTGATGTGTGTGTTTTAT+TGG + chr4_4:49316447-49316466 Msa0685210:intron 30.0%
CTAATTCAAACATTAAGCTG+TGG + chr4_4:49316708-49316727 Msa0685210:intron 30.0%
! GAGGATTGTTTGAAATGTTT+AGG + chr4_4:49316799-49316818 Msa0685210:intron 30.0%
! GGGATTTTGTATGCATTTTA+TGG + chr4_4:49316820-49316839 Msa0685210:intron 30.0%
!!! GTTAAATTAGTTTTCCCGAA+TGG + chr4_4:49316881-49316900 Msa0685210:intron 30.0%
TTGATATATAGGGATGTGTT+TGG + chr4_4:49317126-49317145 Msa0685210:intron 30.0%
!!! TTTTCTGTTTTTGACGTTGT+CGG + chr4_4:49317174-49317193 Msa0685210:intron 30.0%
TTCATATATGCCAATAAAGG+TGG - chr4_4:49317312-49317331 None:intergenic 30.0%
AGCTATCATTGACAGAAAAA+GGG + chr4_4:49317379-49317398 Msa0685210:five_prime_UTR 30.0%
ATTGACAGAAAAAGGGATTA+TGG + chr4_4:49317386-49317405 Msa0685210:five_prime_UTR 30.0%
AAAGAATGTTCCTAATATCG+AGG + chr4_4:49317443-49317462 Msa0685210:five_prime_UTR 30.0%
AAGAATGTTCCTAATATCGA+GGG + chr4_4:49317444-49317463 Msa0685210:five_prime_UTR 30.0%
!!! GTCTATACTTTTTTCAACCA+CGG - chr4_4:49317562-49317581 None:intergenic 30.0%
! ACTTTTACTTCATCTTTTGC+AGG - chr4_4:49317656-49317675 None:intergenic 30.0%
AAATTGGCATCACAGATTAA+AGG + chr4_4:49317809-49317828 Msa0685210:intron 30.0%
GTTAAAATAAATTGGGAAGG+TGG - chr4_4:49317850-49317869 None:intergenic 30.0%
ATTCGTCATGATGAATACAT+AGG + chr4_4:49317905-49317924 Msa0685210:intron 30.0%
TTCGTCATGATGAATACATA+GGG + chr4_4:49317906-49317925 Msa0685210:intron 30.0%
TTTCTGTTCCAATCTATTTG+AGG + chr4_4:49317929-49317948 Msa0685210:intron 30.0%
! AATTTTATTCAGAGGGAAGA+AGG - chr4_4:49317983-49318002 None:intergenic 30.0%
!!! CTGAATTTTAGCTTTGACAA+AGG + chr4_4:49318074-49318093 Msa0685210:intron 30.0%
CTATTCTCAAAGCAAAGAAA+AGG + chr4_4:49318185-49318204 Msa0685210:five_prime_UTR 30.0%
TATCTTATCAATGGGAAAAC+TGG - chr4_4:49318368-49318387 None:intergenic 30.0%
TTCCCATTGATAAGATAATG+AGG + chr4_4:49318371-49318390 Msa0685210:intron 30.0%
CATATCAAAAAAGATTCCAC+TGG - chr4_4:49318416-49318435 None:intergenic 30.0%
GAATAGACATGATTATTAGC+CGG + chr4_4:49318551-49318570 Msa0685210:intron 30.0%
AATGATGTCTCCTGTAATTA+GGG + chr4_4:49318620-49318639 Msa0685210:intron 30.0%
TGAAATTTGTCCCTATACTT+TGG + chr4_4:49318698-49318717 Msa0685210:intron 30.0%
TGTGAGATAACTTCAGAATA+AGG - chr4_4:49318893-49318912 None:intergenic 30.0%
!! TTATTCTGAAGTTATCTCAC+AGG + chr4_4:49318892-49318911 Msa0685210:five_prime_UTR 30.0%
!! TATTCTGAAGTTATCTCACA+GGG + chr4_4:49318893-49318912 Msa0685210:five_prime_UTR 30.0%
GTAATCGTTGTCACTAAAAT+TGG - chr4_4:49319129-49319148 None:intergenic 30.0%
TTTAAATACTGTAGGGACTA+GGG - chr4_4:49319318-49319337 None:intergenic 30.0%
TAAAGCAAGGTTAATGTATG+AGG + chr4_4:49319391-49319410 Msa0685210:intron 30.0%
!! ATGAGAATTTATTTCTGCCA+AGG - chr4_4:49319633-49319652 None:intergenic 30.0%
!! GGTAGTGGAGAAAAATATAA+TGG + chr4_4:49319672-49319691 Msa0685210:five_prime_UTR 30.0%
TTTGTTCACATCCATTTCAT+GGG - chr4_4:49319791-49319810 None:intergenic 30.0%
ATTTGTTCACATCCATTTCA+TGG - chr4_4:49319792-49319811 None:intergenic 30.0%
ATCACCAATGCTATACAATT+TGG + chr4_4:49319853-49319872 Msa0685210:intron 30.0%
TTCACCAAATTGTATAGCAT+TGG - chr4_4:49319860-49319879 None:intergenic 30.0%
! TATACAATTTGGTGAACATC+AGG + chr4_4:49319864-49319883 Msa0685210:five_prime_UTR 30.0%
GACTATTTGTAGAAAGTAGT+AGG + chr4_4:49319949-49319968 Msa0685210:five_prime_UTR 30.0%
ACCCAAAAAATTTATAACGC+TGG + chr4_4:49320038-49320057 Msa0685210:intron 30.0%
!!! CCCAGCGTTATAAATTTTTT+GGG - chr4_4:49320042-49320061 None:intergenic 30.0%
CCCAAAAAATTTATAACGCT+GGG + chr4_4:49320039-49320058 Msa0685210:intron 30.0%
!!! ACCCAGCGTTATAAATTTTT+TGG - chr4_4:49320043-49320062 None:intergenic 30.0%
! TTTTCGGATAGATATTAAGG+GGG - chr4_4:49320068-49320087 None:intergenic 30.0%
GAGTTAGAATGATTTGAACT+TGG - chr4_4:49320495-49320514 None:intergenic 30.0%
TTTGAATCTTGAAGACTTTG+GGG - chr4_4:49320531-49320550 None:intergenic 30.0%
CTTTGAATCTTGAAGACTTT+GGG - chr4_4:49320532-49320551 None:intergenic 30.0%
TCTTTGAATCTTGAAGACTT+TGG - chr4_4:49320533-49320552 None:intergenic 30.0%
AATAGAGAAAATAGAGTGAC+AGG + chr4_4:49320742-49320761 Msa0685210:intron 30.0%
ATAGAGAAAATAGAGTGACA+GGG + chr4_4:49320743-49320762 Msa0685210:intron 30.0%
!! CTAAGAGGTATTCATTCATT+TGG - chr4_4:49320856-49320875 None:intergenic 30.0%
CTTACACATGTCAGAATAAA+AGG - chr4_4:49320962-49320981 None:intergenic 30.0%
! CAAATTCTGAGAATGTTAAC+TGG + chr4_4:49321279-49321298 Msa0685210:CDS 30.0%
ACTCCAAGAAACACAATAAA+GGG - chr4_4:49321375-49321394 None:intergenic 30.0%
!!! CTAGTTTTAATTGTGAACCA+GGG - chr4_4:49321508-49321527 None:intergenic 30.0%
!!! ACTAGTTTTAATTGTGAACC+AGG - chr4_4:49321509-49321528 None:intergenic 30.0%
! TATGATTCTGTGGTGTTAAT+TGG + chr4_4:49321531-49321550 Msa0685210:intron 30.0%
ATGGAAAAAAAGAAGCAAAG+TGG - chr4_4:49321579-49321598 None:intergenic 30.0%
! TTTTCCATGAAGAATGTATG+GGG + chr4_4:49321591-49321610 Msa0685210:intron 30.0%
! CTCAACTATTTTCTTTTTGG+GGG + chr4_4:49321629-49321648 Msa0685210:intron 30.0%
!! TATTTTCTTTTTGGGGGATA+TGG + chr4_4:49321635-49321654 Msa0685210:intron 30.0%
ACATGTGATGAAATGACTAA+AGG + chr4_4:49321732-49321751 Msa0685210:intron 30.0%
CATGTGATGAAATGACTAAA+GGG + chr4_4:49321733-49321752 Msa0685210:intron 30.0%
! GATAGTTTATGCTAGTTCTT+AGG + chr4_4:49321981-49322000 Msa0685210:intron 30.0%
!! GGAACGGATTAGTAAAAAAA+GGG + chr4_4:49322016-49322035 Msa0685210:intron 30.0%
!! GAACGGATTAGTAAAAAAAG+GGG + chr4_4:49322017-49322036 Msa0685210:intron 30.0%
! ATCTAGAATCTTGCTAAAGT+AGG + chr4_4:49322049-49322068 Msa0685210:intron 30.0%
! TCTAGAATCTTGCTAAAGTA+GGG + chr4_4:49322050-49322069 Msa0685210:intron 30.0%
CAGAACAAGATATCAATGAA+AGG + chr4_4:49322137-49322156 Msa0685210:intron 30.0%
ATCTGAAGAGAAAATTGAAG+AGG + chr4_4:49322275-49322294 Msa0685210:intron 30.0%
AAATTGAAGAGGATGAGAAA+TGG + chr4_4:49322286-49322305 Msa0685210:intron 30.0%
AACCTAGCAAAAATTACCTT+TGG + chr4_4:49322458-49322477 Msa0685210:intron 30.0%
! TACCAAAGGTAATTTTTGCT+AGG - chr4_4:49322463-49322482 None:intergenic 30.0%
ACAAACAGTTGTCATTAGTT+TGG - chr4_4:49322533-49322552 None:intergenic 30.0%
ATGATAGAATGCATTATGGA+AGG + chr4_4:49322684-49322703 Msa0685210:CDS 30.0%
! GTATCGGTAATAAATCAAGA+AGG + chr4_4:49322717-49322736 Msa0685210:CDS 30.0%
TGCAAAAATTAGCAAGTAAG+TGG - chr4_4:49322820-49322839 None:intergenic 30.0%
! TTTTATGACTAAACTGAACC+TGG + chr4_4:49322848-49322867 Msa0685210:intron 30.0%
TACATCATATATTAGGGCTA+TGG + chr4_4:49322898-49322917 Msa0685210:intron 30.0%
AGCTAATAGTGAAAAAATGG+TGG - chr4_4:49323103-49323122 None:intergenic 30.0%
TTGAGTCCCATGAATTTATT+TGG + chr4_4:49323132-49323151 Msa0685210:intron 30.0%
TTATGTGGATCACACTATTT+CGG - chr4_4:49323167-49323186 None:intergenic 30.0%
CATTTGCAAAGATAAAACCA+AGG - chr4_4:49323503-49323522 None:intergenic 30.0%
!! GGGTATATATATTTTGGGAA+TGG + chr4_4:49323656-49323675 Msa0685210:intron 30.0%
!! GAGAAATATGATAAGTTGGT+AGG - chr4_4:49323850-49323869 None:intergenic 30.0%
GGTTGAGAAATATGATAAGT+TGG - chr4_4:49323854-49323873 None:intergenic 30.0%
GTCTAGTTACTAGATTGTTA+AGG + chr4_4:49323887-49323906 Msa0685210:intron 30.0%
CTTGACAAATTTGTATCCTT+TGG - chr4_4:49323935-49323954 None:intergenic 30.0%
CAAAACATACAGTTAGTGTA+AGG + chr4_4:49324048-49324067 Msa0685210:intron 30.0%
TGTGATTAATCACAATCTTC+AGG + chr4_4:49324138-49324157 Msa0685210:intron 30.0%
GTGATTAATCACAATCTTCA+GGG + chr4_4:49324139-49324158 Msa0685210:intron 30.0%
! TATTTTCAGTAGATGGTTAG+TGG - chr4_4:49324251-49324270 None:intergenic 30.0%
! TTTTTGTACCGTCAAATAAG+TGG - chr4_4:49324279-49324298 None:intergenic 30.0%
!!! CTACACGTTTGATGATTTTT+TGG - chr4_4:49324313-49324332 None:intergenic 30.0%
!! ATTGATGTTTCTTTTGAAGG+TGG + chr4_4:49324579-49324598 Msa0685210:intron 30.0%
GTTGAATAAACTGAGAAGTA+TGG + chr4_4:49324707-49324726 Msa0685210:CDS 30.0%
TATATGCTTCCAACATTACT+TGG - chr4_4:49324742-49324761 None:intergenic 30.0%
TAACTTATCGTTGTACTCTA+TGG + chr4_4:49324840-49324859 Msa0685210:three_prime_UTR 30.0%
CAAACCTTAAACATTGTCTC+AGG + chr4_4:49316049-49316068 Msa0685210:five_prime_UTR 35.0%
GGTCAATAATTGTTTCAGTC+AGG + chr4_4:49316314-49316333 Msa0685210:intron 35.0%
AAGTACACATGCATGAAAGA+GGG - chr4_4:49316430-49316449 None:intergenic 35.0%
AAAGTACACATGCATGAAAG+AGG - chr4_4:49316431-49316450 None:intergenic 35.0%
! ATTGGGTTTTTGTGTGTATG+TGG + chr4_4:49316465-49316484 Msa0685210:intron 35.0%
ATGTGGAAATTGATACCAGA+AGG + chr4_4:49316482-49316501 Msa0685210:intron 35.0%
TGTGGAAATTGATACCAGAA+GGG + chr4_4:49316483-49316502 Msa0685210:intron 35.0%
! ATTGATACCAGAAGGGTTTT+AGG + chr4_4:49316490-49316509 Msa0685210:intron 35.0%
CATTGGATAGAACAACAACA+TGG + chr4_4:49316523-49316542 Msa0685210:five_prime_UTR 35.0%
! TCAGGTGTTTCTACAACATT+TGG + chr4_4:49316583-49316602 Msa0685210:five_prime_UTR 35.0%
TGTTGTACAGTTTCTCTGTT+TGG + chr4_4:49316756-49316775 Msa0685210:intron 35.0%
TTTAAACAACCTTCGATCTG+CGG + chr4_4:49316941-49316960 Msa0685210:intron 35.0%
TATTATTAACCGCAGATCGA+AGG - chr4_4:49316953-49316972 None:intergenic 35.0%
TTTGACATACTTAGCTCAAG+AGG + chr4_4:49316973-49316992 Msa0685210:intron 35.0%
!!! TTTTGACGTTGTCGGTTTTT+AGG + chr4_4:49317182-49317201 Msa0685210:intron 35.0%
!! AATGGCAGATATTCTAGTTC+TGG - chr4_4:49317255-49317274 None:intergenic 35.0%
!!! CGAATTTTGCAAGTTGATTG+TGG + chr4_4:49317278-49317297 Msa0685210:five_prime_UTR 35.0%
CAGCTATCATTGACAGAAAA+AGG + chr4_4:49317378-49317397 Msa0685210:five_prime_UTR 35.0%
AGGACAGAAACTTTCGATAT+GGG - chr4_4:49317474-49317493 None:intergenic 35.0%
AAGGACAGAAACTTTCGATA+TGG - chr4_4:49317475-49317494 None:intergenic 35.0%
TCTGTTGAGACTTCAGAATT+TGG - chr4_4:49317593-49317612 None:intergenic 35.0%
! GAAGATAGACTTTTGCAAGT+CGG + chr4_4:49317680-49317699 Msa0685210:five_prime_UTR 35.0%
! AAGATAGACTTTTGCAAGTC+GGG + chr4_4:49317681-49317700 Msa0685210:five_prime_UTR 35.0%
TTATTACGAAAAGATCGCAG+TGG + chr4_4:49317742-49317761 Msa0685210:intron 35.0%
! AGTGATGATGTCAATCACAA+AGG + chr4_4:49317871-49317890 Msa0685210:intron 35.0%
! AGCTGATGATTTGTGTACTA+TGG + chr4_4:49318114-49318133 Msa0685210:intron 35.0%
! TGATTTGTGTACTATGGTAC+AGG + chr4_4:49318120-49318139 Msa0685210:intron 35.0%
CTTTCAATTACATCCTTGAG+GGG - chr4_4:49318273-49318292 None:intergenic 35.0%
CCTTTCAATTACATCCTTGA+GGG - chr4_4:49318274-49318293 None:intergenic 35.0%
ACCTTTCAATTACATCCTTG+AGG - chr4_4:49318275-49318294 None:intergenic 35.0%
!!! TGTTATCGTTTTGCTATTGG+CGG + chr4_4:49318305-49318324 Msa0685210:intron 35.0%
GGCCTCATTATCTTATCAAT+GGG - chr4_4:49318376-49318395 None:intergenic 35.0%
AGGCCTCATTATCTTATCAA+TGG - chr4_4:49318377-49318396 None:intergenic 35.0%
TAGTAGTGAGTGACACATTA+AGG - chr4_4:49318456-49318475 None:intergenic 35.0%
GAATGATGTCTCCTGTAATT+AGG + chr4_4:49318619-49318638 Msa0685210:intron 35.0%
ATGTGCATATCCCTAATTAC+AGG - chr4_4:49318633-49318652 None:intergenic 35.0%
AACAACCAACAAATACACCA+AGG - chr4_4:49318664-49318683 None:intergenic 35.0%
! TGGTGTATTTGTTGGTTGTT+TGG + chr4_4:49318664-49318683 Msa0685210:intron 35.0%
!!! CTTTTTTTGCATAGCTTGCA+AGG + chr4_4:49318800-49318819 Msa0685210:intron 35.0%
!! ATTCTGAAGTTATCTCACAG+GGG + chr4_4:49318894-49318913 Msa0685210:five_prime_UTR 35.0%
TGAGCAAACTACTGCTAAAT+TGG - chr4_4:49318966-49318985 None:intergenic 35.0%
TTGACTGAAGCTCTTAAGTT+TGG + chr4_4:49319046-49319065 Msa0685210:intron 35.0%
CTTTAAATACTGTAGGGACT+AGG - chr4_4:49319319-49319338 None:intergenic 35.0%
ATGAGGATCCTAAATACTGT+TGG + chr4_4:49319408-49319427 Msa0685210:intron 35.0%
GCTTTGATACGGACAATAAA+TGG - chr4_4:49319508-49319527 None:intergenic 35.0%
ACTGTTTGTGTGATACATTG+TGG + chr4_4:49319582-49319601 Msa0685210:intron 35.0%
TTTACAAGATTTGAGGGTAG+TGG + chr4_4:49319657-49319676 Msa0685210:five_prime_UTR 35.0%
! TTTCAAACTCTGTCACTTCA+GGG - chr4_4:49319705-49319724 None:intergenic 35.0%
! ATTTCAAACTCTGTCACTTC+AGG - chr4_4:49319706-49319725 None:intergenic 35.0%
TAGACCATGTGATTCTATCA+TGG + chr4_4:49319762-49319781 Msa0685210:five_prime_UTR 35.0%
TTGGATTTAAACTGCACAGA+TGG - chr4_4:49319901-49319920 None:intergenic 35.0%
TCTGTGCAGTTTAAATCCAA+TGG + chr4_4:49319901-49319920 Msa0685210:five_prime_UTR 35.0%
!! ACAAATGACTCAAGCATTGA+GGG - chr4_4:49320309-49320328 None:intergenic 35.0%
! AACAAATGACTCAAGCATTG+AGG - chr4_4:49320310-49320329 None:intergenic 35.0%
AATAAGAAAGAGGAATGAGC+TGG + chr4_4:49320581-49320600 Msa0685210:CDS 35.0%
TTGACAAAAAGGTGATGAAC+AGG + chr4_4:49320782-49320801 Msa0685210:intron 35.0%
TGACAAAAAGGTGATGAACA+GGG + chr4_4:49320783-49320802 Msa0685210:intron 35.0%
TGAATACCTCTTAGTTACAG+TGG + chr4_4:49320862-49320881 Msa0685210:intron 35.0%
! GAGTTGGTTGAGTTAGTTAT+TGG - chr4_4:49320940-49320959 None:intergenic 35.0%
CATGTCAGAATAAAAGGAGT+TGG - chr4_4:49320956-49320975 None:intergenic 35.0%
AAAGCAGAATACTACTGTCA+TGG - chr4_4:49321078-49321097 None:intergenic 35.0%
AAACAAAGAACACCAGTGTA+AGG - chr4_4:49321313-49321332 None:intergenic 35.0%
!!! TGTTCTTTGTTTTGCTTCCT+GGG + chr4_4:49321321-49321340 Msa0685210:intron 35.0%
ACTGATAGAATAATGAACCC+AGG - chr4_4:49321341-49321360 None:intergenic 35.0%
TCTCCCTTTATTGTGTTTCT+TGG + chr4_4:49321369-49321388 Msa0685210:intron 35.0%
CACTCCAAGAAACACAATAA+AGG - chr4_4:49321376-49321395 None:intergenic 35.0%
AAACTAGTCGTATGATTCTG+TGG + chr4_4:49321521-49321540 Msa0685210:intron 35.0%
! TTCTGTGGTGTTAATTGGTA+AGG + chr4_4:49321536-49321555 Msa0685210:intron 35.0%
ACAAATGTTCTTTGAGCGTA+AGG + chr4_4:49321681-49321700 Msa0685210:intron 35.0%
! CTTTGGGTTAAAGAGAGTAA+AGG + chr4_4:49321804-49321823 Msa0685210:intron 35.0%
AGTTCTTAGGCACTTAAAAC+AGG + chr4_4:49321994-49322013 Msa0685210:intron 35.0%
GTTCTTAGGCACTTAAAACA+GGG + chr4_4:49321995-49322014 Msa0685210:intron 35.0%
!! GGGAACGGATTAGTAAAAAA+AGG + chr4_4:49322015-49322034 Msa0685210:intron 35.0%
TAGACTTAACATGAGTGATG+AGG + chr4_4:49322218-49322237 Msa0685210:intron 35.0%
ATACCTATTGTGGTATGCAA+AGG + chr4_4:49322339-49322358 Msa0685210:intron 35.0%
TACCTATTGTGGTATGCAAA+GGG + chr4_4:49322340-49322359 Msa0685210:intron 35.0%
!! TTTTGCTAGGTTCTAGCAAA+TGG - chr4_4:49322450-49322469 None:intergenic 35.0%
AGGGAAAAAGAAGAGGAAAA+GGG - chr4_4:49322500-49322519 None:intergenic 35.0%
CTAGGACAAAGAGTAAATGT+AGG - chr4_4:49322590-49322609 None:intergenic 35.0%
TCTTGTTGATACACGTAGAT+GGG + chr4_4:49322643-49322662 Msa0685210:intron 35.0%
GTAATAAATCAAGAAGGGAC+AGG + chr4_4:49322723-49322742 Msa0685210:CDS 35.0%
ACAAATCTTTCCTCTTAAGG+GGG - chr4_4:49322764-49322783 None:intergenic 35.0%
GACAAATCTTTCCTCTTAAG+GGG - chr4_4:49322765-49322784 None:intergenic 35.0%
CGACAAATCTTTCCTCTTAA+GGG - chr4_4:49322766-49322785 None:intergenic 35.0%
CCTTAAGAGGAAAGATTTGT+CGG + chr4_4:49322764-49322783 Msa0685210:CDS 35.0%
!!! CTGTATAGTTTTGTTCACAC+AGG + chr4_4:49322921-49322940 Msa0685210:intron 35.0%
! AAAAATGGTGGAAAGAGTGT+TGG - chr4_4:49323091-49323110 None:intergenic 35.0%
! TTTTCTTTGTTAAACAGCCC+CGG - chr4_4:49323455-49323474 None:intergenic 35.0%
ATGTCAAGTAAGTCATGTTC+TGG - chr4_4:49323727-49323746 None:intergenic 35.0%
TCTAGATCCTGCAAGATAAA+GGG - chr4_4:49323800-49323819 None:intergenic 35.0%
ATCTAGATCCTGCAAGATAA+AGG - chr4_4:49323801-49323820 None:intergenic 35.0%
TTTATCTTGCAGGATCTAGA+TGG + chr4_4:49323800-49323819 Msa0685210:intron 35.0%
! TTTTGCTGCAATAAACTGAG+TGG + chr4_4:49324014-49324033 Msa0685210:intron 35.0%
AATAAACTGAGTGGTTAACG+CGG + chr4_4:49324023-49324042 Msa0685210:intron 35.0%
ATACAGTTAGTGTAAGGTTG+AGG + chr4_4:49324054-49324073 Msa0685210:intron 35.0%
GTAAGGTTGAGGAATATACT+AGG + chr4_4:49324065-49324084 Msa0685210:intron 35.0%
AACTTCATTAACCACGAACT+TGG + chr4_4:49324114-49324133 Msa0685210:intron 35.0%
ATTAATCACATCCAAGTTCG+TGG - chr4_4:49324128-49324147 None:intergenic 35.0%
AAGTTTAAGTGTTCCGATGA+GGG + chr4_4:49324633-49324652 Msa0685210:CDS 35.0%
ATAAATGCATGCTTCTGTAG+TGG + chr4_4:49324759-49324778 Msa0685210:three_prime_UTR 35.0%
TGACTAATTCGCATTTCACA+TGG - chr4_4:49324878-49324897 None:intergenic 35.0%
AACATTGAAGCCAACCAAAC+AGG + chr4_4:49316011-49316030 Msa0685210:five_prime_UTR 40.0%
CTGAAAACCTAAAACCCTTC+TGG - chr4_4:49316500-49316519 None:intergenic 40.0%
ATTGCTGCCAGAAAAAGCTT+CGG + chr4_4:49316613-49316632 Msa0685210:five_prime_UTR 40.0%
ACAGCAAGTAATTGCCAAAC+AGG + chr4_4:49316661-49316680 Msa0685210:five_prime_UTR 40.0%
AAGCAGAAAACACACCTGTT+TGG - chr4_4:49316678-49316697 None:intergenic 40.0%
GGTTTATTTGAACGCATTGC+TGG + chr4_4:49316729-49316748 Msa0685210:intron 40.0%
CGATCAGTTTCATTCCATTC+GGG - chr4_4:49316898-49316917 None:intergenic 40.0%
CCGATCAGTTTCATTCCATT+CGG - chr4_4:49316899-49316918 None:intergenic 40.0%
CCGAATGGAATGAAACTGAT+CGG + chr4_4:49316896-49316915 Msa0685210:intron 40.0%
!! CATTTGGTGATGATAATGGC+AGG - chr4_4:49317047-49317066 None:intergenic 40.0%
CAGTAACTAACCAGAGAAGA+TGG - chr4_4:49317152-49317171 None:intergenic 40.0%
TGTTGTACAACTACTACCAC+AGG + chr4_4:49317220-49317239 Msa0685210:five_prime_UTR 40.0%
TGAAGTAGAGCTCATAGATG+TGG + chr4_4:49317350-49317369 Msa0685210:five_prime_UTR 40.0%
ATGTTCCTAATATCGAGGGA+TGG + chr4_4:49317448-49317467 Msa0685210:five_prime_UTR 40.0%
! CCTTCTTGCTGTCGATTAAA+AGG - chr4_4:49317494-49317513 None:intergenic 40.0%
! CCTTTTAATCGACAGCAAGA+AGG + chr4_4:49317491-49317510 Msa0685210:five_prime_UTR 40.0%
!!! GAGAACTGCTTTTTGCTGTT+TGG + chr4_4:49317513-49317532 Msa0685210:five_prime_UTR 40.0%
TTGAGACTTCAGAATTTGGC+TGG - chr4_4:49317589-49317608 None:intergenic 40.0%
AACCTCCTGATTGATTGACT+GGG - chr4_4:49318241-49318260 None:intergenic 40.0%
TAACCTCCTGATTGATTGAC+TGG - chr4_4:49318242-49318261 None:intergenic 40.0%
GGTTATTAAAGTTCCCCTCA+AGG + chr4_4:49318257-49318276 Msa0685210:five_prime_UTR 40.0%
CCCTCAAGGATGTAATTGAA+AGG + chr4_4:49318271-49318290 Msa0685210:five_prime_UTR 40.0%
TATGCACATTCTGTGTACCT+TGG + chr4_4:49318644-49318663 Msa0685210:intron 40.0%
! GTGTACCTTGGTGTATTTGT+TGG + chr4_4:49318656-49318675 Msa0685210:intron 40.0%
! CTAGAACTCCTTTTGACCAA+AGG - chr4_4:49318827-49318846 None:intergenic 40.0%
! TCAAAAGGAGTTCTAGCAGT+TGG + chr4_4:49318831-49318850 Msa0685210:five_prime_UTR 40.0%
! CTTCAGAATAAGGAAGCACA+TGG - chr4_4:49318883-49318902 None:intergenic 40.0%
TTATCTCACAGGGGATTTCT+AGG + chr4_4:49318903-49318922 Msa0685210:five_prime_UTR 40.0%
ACCTGTGAGAACTGAGAATA+AGG + chr4_4:49319071-49319090 Msa0685210:intron 40.0%
CCTGTGAGAACTGAGAATAA+GGG + chr4_4:49319072-49319091 Msa0685210:intron 40.0%
CTGTGAGAACTGAGAATAAG+GGG + chr4_4:49319073-49319092 Msa0685210:intron 40.0%
TACTGATATCATGGCACCTT+TGG + chr4_4:49319184-49319203 Msa0685210:intron 40.0%
TCAACATAGACTCACACCAA+AGG - chr4_4:49319203-49319222 None:intergenic 40.0%
! GCTTTATAGCTTGCAGTAGA+TGG - chr4_4:49319377-49319396 None:intergenic 40.0%
CTACTGCAAGCTATAAAGCA+AGG + chr4_4:49319378-49319397 Msa0685210:intron 40.0%
AACAGGGTCCAACAGTATTT+AGG - chr4_4:49319419-49319438 None:intergenic 40.0%
GCTTGCATGGTTTGAAGAAA+TGG + chr4_4:49319469-49319488 Msa0685210:intron 40.0%
CATGAGCAGAAAGAGAACAA+TGG + chr4_4:49319727-49319746 Msa0685210:five_prime_UTR 40.0%
GTCTCCATGATAGAATCACA+TGG - chr4_4:49319769-49319788 None:intergenic 40.0%
TATCATGGAGACCCATGAAA+TGG + chr4_4:49319777-49319796 Msa0685210:five_prime_UTR 40.0%
!! GTATAGCATTGGTGATCTTC+TGG - chr4_4:49319849-49319868 None:intergenic 40.0%
CAGTTTAAATCCAATGGCTC+TGG + chr4_4:49319907-49319926 Msa0685210:five_prime_UTR 40.0%
!! CAAATGACTCAAGCATTGAG+GGG - chr4_4:49320308-49320327 None:intergenic 40.0%
CTGAATGTCATTGCTTTGAC+AGG + chr4_4:49320341-49320360 Msa0685210:five_prime_UTR 40.0%
!! CTATGAAGATTGACTCGACA+AGG + chr4_4:49320364-49320383 Msa0685210:exon 40.0%
TACCTCTTAGTTACAGTGGA+TGG + chr4_4:49320866-49320885 Msa0685210:intron 40.0%
ATCCATCCACTGTAACTAAG+AGG - chr4_4:49320871-49320890 None:intergenic 40.0%
!!! GTGTTCTTTGTTTTGCTTCC+TGG + chr4_4:49321320-49321339 Msa0685210:intron 40.0%
! AGCAGATCTGATGCTAGTTT+AGG + chr4_4:49321451-49321470 Msa0685210:intron 40.0%
! TCTGATGCTAGTTTAGGCAT+TGG + chr4_4:49321457-49321476 Msa0685210:intron 40.0%
!! CTAGTTTAGGCATTGGTTAC+TGG + chr4_4:49321464-49321483 Msa0685210:intron 40.0%
TTCTAATATGCACTTTGCCC+TGG + chr4_4:49321488-49321507 Msa0685210:intron 40.0%
GGTGTTAATTGGTAAGGCAT+TGG + chr4_4:49321542-49321561 Msa0685210:intron 40.0%
CATGAAGAATGTATGGGGTT+GGG + chr4_4:49321596-49321615 Msa0685210:intron 40.0%
!! TTTCTTTTTGGGGGATATGG+TGG + chr4_4:49321638-49321657 Msa0685210:intron 40.0%
AGTATAGCCAAAGCAACACT+AGG + chr4_4:49321762-49321781 Msa0685210:intron 40.0%
!!! AGAGTAAAGGTTTTTGGTCG+TGG + chr4_4:49321817-49321836 Msa0685210:intron 40.0%
!!! GAGTAAAGGTTTTTGGTCGT+GGG + chr4_4:49321818-49321837 Msa0685210:intron 40.0%
!!! AGTAAAGGTTTTTGGTCGTG+GGG + chr4_4:49321819-49321838 Msa0685210:intron 40.0%
AGCTAAGCAAGACAACAAGA+AGG + chr4_4:49321933-49321952 Msa0685210:intron 40.0%
TAGGCACTTAAAACAGGGAA+CGG + chr4_4:49322000-49322019 Msa0685210:intron 40.0%
CAAGAGACTTGAACTAGTTG+AGG + chr4_4:49322082-49322101 Msa0685210:intron 40.0%
TTGAACTAGTTGAGGTGCAT+TGG + chr4_4:49322090-49322109 Msa0685210:intron 40.0%
AACCCTTTGCATACCACAAT+AGG - chr4_4:49322345-49322364 None:intergenic 40.0%
ATTGTGGTATGCAAAGGGTT+AGG + chr4_4:49322345-49322364 Msa0685210:intron 40.0%
AAGAAGAGGAAAAGGGAGTT+GGG - chr4_4:49322493-49322512 None:intergenic 40.0%
AAAGAAGAGGAAAAGGGAGT+TGG - chr4_4:49322494-49322513 None:intergenic 40.0%
GAGGGAAAAAGAAGAGGAAA+AGG - chr4_4:49322501-49322520 None:intergenic 40.0%
!! TTAGAGAATGGGTTAGTCAG+AGG - chr4_4:49322561-49322580 None:intergenic 40.0%
GTAGGTCTGAGTTAGAGAAT+GGG - chr4_4:49322572-49322591 None:intergenic 40.0%
TGTAGGTCTGAGTTAGAGAA+TGG - chr4_4:49322573-49322592 None:intergenic 40.0%
! GTCTTGTTGATACACGTAGA+TGG + chr4_4:49322642-49322661 Msa0685210:intron 40.0%
ATAAATCAAGAAGGGACAGG+TGG + chr4_4:49322726-49322745 Msa0685210:CDS 40.0%
CCGACAAATCTTTCCTCTTA+AGG - chr4_4:49322767-49322786 None:intergenic 40.0%
TAAGAGGAAAGATTTGTCGG+AGG + chr4_4:49322767-49322786 Msa0685210:CDS 40.0%
CTAAACTGAACCTGGAAACA+TGG + chr4_4:49322856-49322875 Msa0685210:intron 40.0%
!! TTTCTTGGAAGCATTGTTGC+TGG + chr4_4:49322963-49322982 Msa0685210:intron 40.0%
GGATCACACTATTTCGGATA+TGG - chr4_4:49323161-49323180 None:intergenic 40.0%
ACCAATAGTAGAGATAGTGC+CGG + chr4_4:49323193-49323212 Msa0685210:intron 40.0%
TAGTTGTCTGGGTGTGAATA+GGG - chr4_4:49323347-49323366 None:intergenic 40.0%
TTAGTTGTCTGGGTGTGAAT+AGG - chr4_4:49323348-49323367 None:intergenic 40.0%
TCTGCCGAAGTCTTGAATTA+TGG + chr4_4:49323376-49323395 Msa0685210:intron 40.0%
GCCTCCATAATTCAAGACTT+CGG - chr4_4:49323383-49323402 None:intergenic 40.0%
!!! ATTTTTTTTCTTCGAGGGGC+CGG + chr4_4:49323433-49323452 Msa0685210:intron 40.0%
TTCATATATGCATGCGTCCT+TGG + chr4_4:49323483-49323502 Msa0685210:intron 40.0%
ACTATGTTTGAAGGCTTGCA+CGG - chr4_4:49323566-49323585 None:intergenic 40.0%
! TTTCCTTGTGTGACCGTTTT+CGG + chr4_4:49323635-49323654 Msa0685210:intron 40.0%
TAGAACTCCCTTTATCTTGC+AGG + chr4_4:49323790-49323809 Msa0685210:intron 40.0%
AACTAGACAGTCTTACCGTT+TGG - chr4_4:49323875-49323894 None:intergenic 40.0%
TTTCAGTAGATGGTTAGTGG+AGG - chr4_4:49324248-49324267 None:intergenic 40.0%
TGCTGACAGATTCTACATCT+AGG - chr4_4:49324372-49324391 None:intergenic 40.0%
! ATAGGAAGTGCAACGATAAG+TGG - chr4_4:49324485-49324504 None:intergenic 40.0%
CAAGTTTAAGTGTTCCGATG+AGG + chr4_4:49324632-49324651 Msa0685210:CDS 40.0%
TCAAGCTGTATTGCAGTGAT+TGG + chr4_4:49324899-49324918 Msa0685210:three_prime_UTR 40.0%
TCGAACTGAACCTGTTTGGT+TGG - chr4_4:49316024-49316043 None:intergenic 45.0%
ACCAAACAGGTTCAGTTCGA+AGG + chr4_4:49316024-49316043 Msa0685210:five_prime_UTR 45.0%
ACCTTCGAACTGAACCTGTT+TGG - chr4_4:49316028-49316047 None:intergenic 45.0%
! TATTGACCCTCTGGTTCCAA+AGG + chr4_4:49316263-49316282 Msa0685210:intron 45.0%
! ATTGACCCTCTGGTTCCAAA+GGG + chr4_4:49316264-49316283 Msa0685210:intron 45.0%
! CCAAAGGGGTTCTGATAATC+CGG + chr4_4:49316279-49316298 Msa0685210:intron 45.0%
! GGTTCTGATAATCCGGAGTT+CGG + chr4_4:49316286-49316305 Msa0685210:intron 45.0%
ATCAGATGTGTGTCCAACTG+AGG + chr4_4:49316553-49316572 Msa0685210:five_prime_UTR 45.0%
TCCAACTGAGGATGCAATTC+AGG + chr4_4:49316565-49316584 Msa0685210:five_prime_UTR 45.0%
ACCTGAATTGCATCCTCAGT+TGG - chr4_4:49316569-49316588 None:intergenic 45.0%
!! GAAGCTTTTTCTGGCAGCAA+TGG - chr4_4:49316614-49316633 None:intergenic 45.0%
!! TCTCGAACCGAAGCTTTTTC+TGG - chr4_4:49316623-49316642 None:intergenic 45.0%
!! ACTTGCTGTTGAGAAGCTGT+GGG - chr4_4:49316650-49316669 None:intergenic 45.0%
!! TACTTGCTGTTGAGAAGCTG+TGG - chr4_4:49316651-49316670 None:intergenic 45.0%
ATGTGTTTGGCCATCTTCTC+TGG + chr4_4:49317139-49317158 Msa0685210:intron 45.0%
!! GCAAGTTGATTGTGGTTCTG+AGG + chr4_4:49317286-49317305 Msa0685210:five_prime_UTR 45.0%
AGACTTCAGAATTTGGCTGG+AGG - chr4_4:49317586-49317605 None:intergenic 45.0%
!! TTGCTATTGGCGGATTACTC+AGG + chr4_4:49318315-49318334 Msa0685210:intron 45.0%
ACTCAGGTCTCAAGGATGAA+TGG + chr4_4:49318331-49318350 Msa0685210:intron 45.0%
TAATGAGGCCTGTTTCCGTA+AGG + chr4_4:49318386-49318405 Msa0685210:intron 45.0%
GATTCCACTGGAATGCCTTA+CGG - chr4_4:49318404-49318423 None:intergenic 45.0%
TGCAAGGTCCTTTGGTCAAA+AGG + chr4_4:49318816-49318835 Msa0685210:five_prime_UTR 45.0%
ACATGGAAGTAAACCACCAC+AGG - chr4_4:49318866-49318885 None:intergenic 45.0%
CCCTTATTCTCAGTTCTCAC+AGG - chr4_4:49319075-49319094 None:intergenic 45.0%
AGGGATCAAGGCTTGAAGAT+AGG - chr4_4:49319299-49319318 None:intergenic 45.0%
CTCGTACAGTCTCACTTGTA+TGG + chr4_4:49319440-49319459 Msa0685210:intron 45.0%
AATAGCATTGCCAGAGCCAT+TGG - chr4_4:49319920-49319939 None:intergenic 45.0%
TGGCAATGCTATTCAGGTCT+GGG + chr4_4:49319927-49319946 Msa0685210:five_prime_UTR 45.0%
ACAAGGATGCTCAACGGTAA+AGG + chr4_4:49320381-49320400 Msa0685210:CDS 45.0%
GAGAAAATAGAGTGACAGGG+TGG + chr4_4:49320746-49320765 Msa0685210:intron 45.0%
GGAAAGAGCAATAGCTCAGT+CGG - chr4_4:49320835-49320854 None:intergenic 45.0%
! TCACCTATTGACTGCTCTCT+CGG + chr4_4:49321100-49321119 Msa0685210:intron 45.0%
CTCTCTCGGTCATACATTAC+TGG + chr4_4:49321114-49321133 Msa0685210:intron 45.0%
CTGGTATGCTTTCCTTACAC+TGG + chr4_4:49321298-49321317 Msa0685210:intron 45.0%
CCAACCCCATACATTCTTCA+TGG - chr4_4:49321598-49321617 None:intergenic 45.0%
CCATGAAGAATGTATGGGGT+TGG + chr4_4:49321595-49321614 Msa0685210:intron 45.0%
!! CACTTCTCCTAGTGTTGCTT+TGG - chr4_4:49321772-49321791 None:intergenic 45.0%
AGCAACACTAGGAGAAGTGA+AGG + chr4_4:49321773-49321792 Msa0685210:intron 45.0%
GCAACACTAGGAGAAGTGAA+GGG + chr4_4:49321774-49321793 Msa0685210:intron 45.0%
CAACACTAGGAGAAGTGAAG+GGG + chr4_4:49321775-49321794 Msa0685210:intron 45.0%
AAGTGAAGGGGTTTCAGCTT+TGG + chr4_4:49321787-49321806 Msa0685210:intron 45.0%
AGTGAAGGGGTTTCAGCTTT+GGG + chr4_4:49321788-49321807 Msa0685210:intron 45.0%
!! AGGTGCATTGGTGACGAAAA+GGG + chr4_4:49322102-49322121 Msa0685210:intron 45.0%
CAGTTGGAGGGAAAAAGAAG+AGG - chr4_4:49322507-49322526 None:intergenic 45.0%
! TTAGTTTGGTCGCAGTTGGA+GGG - chr4_4:49322519-49322538 None:intergenic 45.0%
! ATTAGTTTGGTCGCAGTTGG+AGG - chr4_4:49322520-49322539 None:intergenic 45.0%
! GTCATTAGTTTGGTCGCAGT+TGG - chr4_4:49322523-49322542 None:intergenic 45.0%
GGAAGGCTGCAATGATGTAT+CGG + chr4_4:49322701-49322720 Msa0685210:CDS 45.0%
AATCTTTCCTCTTAAGGGGG+AGG - chr4_4:49322761-49322780 None:intergenic 45.0%
ATGCATCGAACCATGTTTCC+AGG - chr4_4:49322869-49322888 None:intergenic 45.0%
ACCGGCACTATCTCTACTAT+TGG - chr4_4:49323197-49323216 None:intergenic 45.0%
!! AGGAGAATGAGAAGTGCTAC+CGG - chr4_4:49323215-49323234 None:intergenic 45.0%
GCCGAAGTCTTGAATTATGG+AGG + chr4_4:49323379-49323398 Msa0685210:intron 45.0%
!!! TTTTTTTTCTTCGAGGGGCC+GGG + chr4_4:49323434-49323453 Msa0685210:intron 45.0%
! TTCCTTGTGTGACCGTTTTC+GGG + chr4_4:49323636-49323655 Msa0685210:intron 45.0%
TGGTTAGTGGAGGATATACC+AGG - chr4_4:49324238-49324257 None:intergenic 45.0%
TCTCTTGCTTCAAGAGGAGT+GGG - chr4_4:49324669-49324688 None:intergenic 45.0%
TTCTCTTGCTTCAAGAGGAG+TGG - chr4_4:49324670-49324689 None:intergenic 45.0%
! GCTGATTCTCTTGCTTCAAG+AGG - chr4_4:49324675-49324694 None:intergenic 45.0%
CATGAAGTCATGCTGAGAAC+TGG - chr4_4:49324932-49324951 None:intergenic 45.0%
!!! AATTTAAAATATAAATATGT+TGG + chr4_4:49323028-49323047 Msa0685210:intron 5.0%
!!! ATTTAAAATATAAATATGTT+GGG + chr4_4:49323029-49323048 Msa0685210:intron 5.0%
! TTGACCCTCTGGTTCCAAAG+GGG + chr4_4:49316265-49316284 Msa0685210:intron 50.0%
!! AGAACCCCTTTGGAACCAGA+GGG - chr4_4:49316272-49316291 None:intergenic 50.0%
CCGGATTATCAGAACCCCTT+TGG - chr4_4:49316282-49316301 None:intergenic 50.0%
!! ATAATCCGGAGTTCGGTGTC+TGG + chr4_4:49316293-49316312 Msa0685210:intron 50.0%
ATTGACCAGACACCGAACTC+CGG - chr4_4:49316301-49316320 None:intergenic 50.0%
!! GTTCTGGATGCTGTTTCCTG+TGG - chr4_4:49317239-49317258 None:intergenic 50.0%
!! GGTTCTGAGGCCACCTTTAT+TGG + chr4_4:49317299-49317318 Msa0685210:five_prime_UTR 50.0%
ATGGGCCATCCCTCGATATT+AGG - chr4_4:49317456-49317475 None:intergenic 50.0%
! GCTGTTTGGTTCCATCACTG+AGG + chr4_4:49317527-49317546 Msa0685210:five_prime_UTR 50.0%
! GTTTGGTTCCATCACTGAGG+AGG + chr4_4:49317530-49317549 Msa0685210:five_prime_UTR 50.0%
GTTCCATCACTGAGGAGGTA+TGG + chr4_4:49317535-49317554 Msa0685210:five_prime_UTR 50.0%
AGTCGGGTATTCTGCTGTGA+AGG + chr4_4:49317697-49317716 Msa0685210:five_prime_UTR 50.0%
GTGCTCCCAGTCAATCAATC+AGG + chr4_4:49318233-49318252 Msa0685210:five_prime_UTR 50.0%
CTCCCAGTCAATCAATCAGG+AGG + chr4_4:49318236-49318255 Msa0685210:five_prime_UTR 50.0%
CTGGAATGCCTTACGGAAAC+AGG - chr4_4:49318397-49318416 None:intergenic 50.0%
! GTTTCCGTAAGGCATTCCAG+TGG + chr4_4:49318397-49318416 Msa0685210:intron 50.0%
! GCATAGCTTGCAAGGTCCTT+TGG + chr4_4:49318808-49318827 Msa0685210:intron 50.0%
! CTCACAGGGGATTTCTAGGT+TGG + chr4_4:49318907-49318926 Msa0685210:intron 50.0%
!! AGGGGATTTCTAGGTTGGTG+CGG + chr4_4:49318912-49318931 Msa0685210:intron 50.0%
ACTGTAGGGACTAGGGATCA+AGG - chr4_4:49319311-49319330 None:intergenic 50.0%
GTGAGACTGTACGAGCAACA+GGG - chr4_4:49319435-49319454 None:intergenic 50.0%
AGTGAGACTGTACGAGCAAC+AGG - chr4_4:49319436-49319455 None:intergenic 50.0%
!! TGGCTCTGGCAATGCTATTC+AGG + chr4_4:49319921-49319940 Msa0685210:five_prime_UTR 50.0%
CTGGCAATGCTATTCAGGTC+TGG + chr4_4:49319926-49319945 Msa0685210:five_prime_UTR 50.0%
GGTATGCATGGCTATGCTCT+TGG + chr4_4:49320096-49320115 Msa0685210:intron 50.0%
GACTCGACAAGGATGCTCAA+CGG + chr4_4:49320375-49320394 Msa0685210:CDS 50.0%
AGGATGCTCAACGGTAAAGG+CGG + chr4_4:49320384-49320403 Msa0685210:CDS 50.0%
AGTCGGAAGGGAAAACTCTG+GGG - chr4_4:49320818-49320837 None:intergenic 50.0%
CAGTCGGAAGGGAAAACTCT+GGG - chr4_4:49320819-49320838 None:intergenic 50.0%
TCAGTCGGAAGGGAAAACTC+TGG - chr4_4:49320820-49320839 None:intergenic 50.0%
GAGCAATAGCTCAGTCGGAA+GGG - chr4_4:49320830-49320849 None:intergenic 50.0%
AGAGCAATAGCTCAGTCGGA+AGG - chr4_4:49320831-49320850 None:intergenic 50.0%
TGACCGAGAGAGCAGTCAAT+AGG - chr4_4:49321106-49321125 None:intergenic 50.0%
CTCTATCTTGCGCTGCTGAA+GGG - chr4_4:49321235-49321254 None:intergenic 50.0%
CTTCAGCAGCGCAAGATAGA+GGG + chr4_4:49321234-49321253 Msa0685210:CDS 50.0%
!! GAGGTGCATTGGTGACGAAA+AGG + chr4_4:49322101-49322120 Msa0685210:intron 50.0%
AGTTGGGAGAGGGTTACCAA+AGG - chr4_4:49322477-49322496 None:intergenic 50.0%
AGGAAAAGGGAGTTGGGAGA+GGG - chr4_4:49322487-49322506 None:intergenic 50.0%
AACAAAGCCTCCCCCTTAAG+AGG + chr4_4:49322751-49322770 Msa0685210:CDS 50.0%
! GGAGGCACAAAGTTCATGCA+AGG + chr4_4:49322785-49322804 Msa0685210:CDS 50.0%
!!! TTTTTTTCTTCGAGGGGCCG+GGG + chr4_4:49323435-49323454 Msa0685210:intron 50.0%
TACCCGAAAACGGTCACACA+AGG - chr4_4:49323641-49323660 None:intergenic 50.0%
GGGACACAAGTTACCCTCAT+CGG - chr4_4:49324649-49324668 None:intergenic 50.0%
CATGCTTCTGTAGTGGCTCT+TGG + chr4_4:49324766-49324785 Msa0685210:three_prime_UTR 50.0%
!! CAGAACCCCTTTGGAACCAG+AGG - chr4_4:49316273-49316292 None:intergenic 55.0%
GGACCATACCTCCTCAGTGA+TGG - chr4_4:49317541-49317560 None:intergenic 55.0%
TCTGCTGTGAAGGAAGCTGC+AGG + chr4_4:49317707-49317726 Msa0685210:five_prime_UTR 55.0%
!! GGCGGATTACTCAGGTCTCA+AGG + chr4_4:49318323-49318342 Msa0685210:intron 55.0%
CAGTTGGACGATCACTCCTG+TGG + chr4_4:49318847-49318866 Msa0685210:five_prime_UTR 55.0%
TTGGACGATCACTCCTGTGG+TGG + chr4_4:49318850-49318869 Msa0685210:five_prime_UTR 55.0%
TGTATGGCTGCACGCTTGCA+TGG + chr4_4:49319456-49319475 Msa0685210:intron 55.0%
GTCGGAAGGGAAAACTCTGG+GGG - chr4_4:49320817-49320836 None:intergenic 55.0%
CCTCTATCTTGCGCTGCTGA+AGG - chr4_4:49321236-49321255 None:intergenic 55.0%
CCTTCAGCAGCGCAAGATAG+AGG + chr4_4:49321233-49321252 Msa0685210:CDS 55.0%
GAGGAAAAGGGAGTTGGGAG+AGG - chr4_4:49322488-49322507 None:intergenic 55.0%
GGTTAATGACTTTCGGCGCC+TGG + chr4_4:49324217-49324236 Msa0685210:intron 55.0%
! CACTGAGGAGGTATGGTCCG+TGG + chr4_4:49317542-49317561 Msa0685210:five_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 49315980 49325020 49315980 ID=Msa0685210;Name=Msa0685210
chr4_4 mRNA 49315980 49325020 49315980 ID=Msa0685210-mRNA-1;Parent=Msa0685210;Name=Msa0685210-mRNA-1;_AED=0.05;_eAED=0.05;_QI=1411|1|1|1|0.72|0.5|12|274|222
chr4_4 exon 49315980 49316070 49315980 ID=Msa0685210-mRNA-1:exon:12317;Parent=Msa0685210-mRNA-1
chr4_4 exon 49316512 49316682 49316512 ID=Msa0685210-mRNA-1:exon:12318;Parent=Msa0685210-mRNA-1
chr4_4 exon 49317204 49317728 49317204 ID=Msa0685210-mRNA-1:exon:12319;Parent=Msa0685210-mRNA-1
chr4_4 exon 49318142 49318292 49318142 ID=Msa0685210-mRNA-1:exon:12320;Parent=Msa0685210-mRNA-1
chr4_4 exon 49318814 49318924 49318814 ID=Msa0685210-mRNA-1:exon:12321;Parent=Msa0685210-mRNA-1
chr4_4 exon 49319639 49319832 49319639 ID=Msa0685210-mRNA-1:exon:12322;Parent=Msa0685210-mRNA-1
chr4_4 exon 49319858 49319980 49319858 ID=Msa0685210-mRNA-1:exon:12323;Parent=Msa0685210-mRNA-1
chr4_4 exon 49320321 49320602 49320321 ID=Msa0685210-mRNA-1:exon:12324;Parent=Msa0685210-mRNA-1
chr4_4 exon 49321231 49321300 49321231 ID=Msa0685210-mRNA-1:exon:12325;Parent=Msa0685210-mRNA-1
chr4_4 exon 49322661 49322806 49322661 ID=Msa0685210-mRNA-1:exon:12326;Parent=Msa0685210-mRNA-1
chr4_4 exon 49323812 49323878 49323812 ID=Msa0685210-mRNA-1:exon:12327;Parent=Msa0685210-mRNA-1
chr4_4 exon 49324598 49325020 49324598 ID=Msa0685210-mRNA-1:exon:12328;Parent=Msa0685210-mRNA-1
chr4_4 five_prime_UTR 49315980 49316070 49315980 ID=Msa0685210-mRNA-1:five_prime_utr;Parent=Msa0685210-mRNA-1
chr4_4 five_prime_UTR 49316512 49316682 49316512 ID=Msa0685210-mRNA-1:five_prime_utr;Parent=Msa0685210-mRNA-1
chr4_4 five_prime_UTR 49317204 49317728 49317204 ID=Msa0685210-mRNA-1:five_prime_utr;Parent=Msa0685210-mRNA-1
chr4_4 five_prime_UTR 49318142 49318292 49318142 ID=Msa0685210-mRNA-1:five_prime_utr;Parent=Msa0685210-mRNA-1
chr4_4 five_prime_UTR 49318814 49318924 49318814 ID=Msa0685210-mRNA-1:five_prime_utr;Parent=Msa0685210-mRNA-1
chr4_4 five_prime_UTR 49319639 49319832 49319639 ID=Msa0685210-mRNA-1:five_prime_utr;Parent=Msa0685210-mRNA-1
chr4_4 five_prime_UTR 49319858 49319980 49319858 ID=Msa0685210-mRNA-1:five_prime_utr;Parent=Msa0685210-mRNA-1
chr4_4 five_prime_UTR 49320321 49320365 49320321 ID=Msa0685210-mRNA-1:five_prime_utr;Parent=Msa0685210-mRNA-1
chr4_4 CDS 49320366 49320602 49320366 ID=Msa0685210-mRNA-1:cds;Parent=Msa0685210-mRNA-1
chr4_4 CDS 49321231 49321300 49321231 ID=Msa0685210-mRNA-1:cds;Parent=Msa0685210-mRNA-1
chr4_4 CDS 49322661 49322806 49322661 ID=Msa0685210-mRNA-1:cds;Parent=Msa0685210-mRNA-1
chr4_4 CDS 49323812 49323878 49323812 ID=Msa0685210-mRNA-1:cds;Parent=Msa0685210-mRNA-1
chr4_4 CDS 49324598 49324746 49324598 ID=Msa0685210-mRNA-1:cds;Parent=Msa0685210-mRNA-1
chr4_4 three_prime_UTR 49324747 49325020 49324747 ID=Msa0685210-mRNA-1:three_prime_utr;Parent=Msa0685210-mRNA-1
Gene Sequence

>Msa0685210

ATGAAGATTGACTCGACAAGGATGCTCAACGGTAAAGGCGGAGTCAACAATATTGCTTCTTGCAGCAAACTTTGTGCTAATAAGCCAAATACCTCATATGAAAAAGACACAAAAGGTGCATGTACTCCAAGTTCAAATCATTCTAACTCAGATAAAGAGAAACCCCAAAGTCTTCAAGATTCAAAGAAGAGACTGCGAACTGCTATATCTTCTCTAATAAGAAAGAGGAATGAGCTGGCCCTTCAGCAGCGCAAGATAGAGGGTGAGATCGCTAGTGTTGATGAACAAATTCTGAGAATGTTAACTGATGGGAAAGATGACTTTGTATCAATGATAGAATGCATTATGGAAGGCTGCAATGATGTATCGGTAATAAATCAAGAAGGGACAGGTGGACAACAAAGCCTCCCCCTTAAGAGGAAAGATTTGTCGGAGGCACAAAGTTCATGCAAGGATCTAGATGGTATATGTCATGAAAACAATTGGGTCCTACCAACTTATCATATTTCTCAACCAAACGGTGGATTGCAAGCCAATGTAACTGTTAATATAAACAAGTTTAAGTGTTCCGATGAGGGTAACTTGTGTCCCACTCCTCTTGAAGCAAGAGAATCAGCTGCTGCTAAGATGTTGAATAAACTGAGAAGTATGGGAATATTAACCAAGTAA
Protein sequence

>Msa0685210

MKIDSTRMLNGKGGVNNIASCSKLCANKPNTSYEKDTKGACTPSSNHSNSDKEKPQSLQDSKKRLRTAISSLIRKRNELALQQRKIEGEIASVDEQILRMLTDGKDDFVSMIECIMEGCNDVSVINQEGTGGQQSLPLKRKDLSEAQSSCKDLDGICHENNWVLPTYHISQPNGGLQANVTVNINKFKCSDEGNLCPTPLEARESAAAKMLNKLRSMGILTK*