Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0685850 | XP_013456357.1 | 96.471 | 255 | 9 | 0 | 1 | 255 | 1 | 255 | 0.0 | 521 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0685850 | sp|P0DPD7|EFMT4_HUMAN | 34.016 | 244 | 152 | 3 | 14 | 250 | 14 | 255 | 2.39e-42 | 147 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0685850 | A0A072UMY8 | 96.471 | 255 | 9 | 0 | 1 | 255 | 1 | 255 | 0.0 | 521 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0605200 | Msa0685850 | 0.807520 | 4.856802e-50 | -8.615850e-47 |
| Msa0646320 | Msa0685850 | 0.815996 | 6.943216e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0685850 | MtrunA17_Chr4g0034381 | 96.471 | 255 | 9 | 0 | 1 | 255 | 1 | 255 | 0.0 | 521 |
| Msa0685850 | MtrunA17_Chr4g0020211 | 30.270 | 185 | 117 | 4 | 12 | 194 | 5 | 179 | 7.83e-26 | 101 |
| Msa0685850 | MtrunA17_Chr2g0297031 | 29.688 | 192 | 113 | 8 | 19 | 195 | 7 | 191 | 1.41e-19 | 85.1 |
| Msa0685850 | MtrunA17_Chr8g0378231 | 33.333 | 180 | 97 | 8 | 26 | 194 | 25 | 192 | 2.50e-18 | 84.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0685850 | AT4G34360.1 | 65.289 | 242 | 82 | 1 | 11 | 252 | 6 | 245 | 5.16e-122 | 348 |
| Msa0685850 | AT3G60910.1 | 28.972 | 214 | 140 | 4 | 20 | 231 | 13 | 216 | 1.07e-28 | 109 |
| Msa0685850 | AT3G17365.1 | 33.505 | 194 | 105 | 8 | 10 | 198 | 2 | 176 | 3.79e-25 | 100 |
| Msa0685850 | AT3G17365.2 | 28.700 | 223 | 115 | 9 | 10 | 198 | 2 | 214 | 1.06e-18 | 83.6 |
| Msa0685850 | AT2G31740.1 | 26.316 | 190 | 119 | 5 | 16 | 194 | 19 | 198 | 3.72e-15 | 75.1 |
| Msa0685850 | AT3G60910.2 | 27.439 | 164 | 108 | 3 | 69 | 231 | 1 | 154 | 5.81e-15 | 71.6 |
Find 74 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATACCTCCTTCAGAGTAAA+TGG | 0.179250 | 4_4:+50108858 | None:intergenic |
| ATATTTATCTCAATAACTTT+TGG | 0.294771 | 4_4:-50110033 | Msa0685850:CDS |
| TTGGACATAGTTTCGGGCTT+TGG | 0.296551 | 4_4:+50110105 | None:intergenic |
| ATTCATGCCAGCCACATTTC+AGG | 0.301834 | 4_4:-50109939 | Msa0685850:intron |
| GTTGAATGATGTGACGAAAA+TGG | 0.306994 | 4_4:+50111266 | None:intergenic |
| AATATATTCAAAGTGCTATA+TGG | 0.314978 | 4_4:-50108749 | Msa0685850:three_prime_UTR |
| AAATCCGGTGCATTAAATAT+AGG | 0.331855 | 4_4:+50109913 | None:intergenic |
| CGTACCTTAATCCTTCTTAC+TGG | 0.332734 | 4_4:-50111429 | Msa0685850:intron |
| GGCACTTCAATCTTCTTAAC+AGG | 0.339241 | 4_4:+50109015 | None:intergenic |
| AAGCTCGAGTACAGAGGAAT+TGG | 0.341672 | 4_4:+50111231 | None:intergenic |
| AATACCAGTAAGAAGGATTA+AGG | 0.357541 | 4_4:+50111425 | None:intergenic |
| CATGACCTTGGACATAGTTT+CGG | 0.360959 | 4_4:+50110098 | None:intergenic |
| TCTGTTGAGTGGACAACTTT+TGG | 0.374812 | 4_4:-50109883 | Msa0685850:CDS |
| ATTGAGATAAATATGCCATT+TGG | 0.404045 | 4_4:+50110042 | None:intergenic |
| AGAGGAATTGGGTGTGAGAT+GGG | 0.404822 | 4_4:+50111243 | None:intergenic |
| GGTTATCGAGAAAGGAACTA+TGG | 0.416741 | 4_4:-50110295 | Msa0685850:intron |
| ATGACCTTGGACATAGTTTC+GGG | 0.418705 | 4_4:+50110099 | None:intergenic |
| AATCCGGTGCATTAAATATA+GGG | 0.420986 | 4_4:+50109914 | None:intergenic |
| GTTTCGGGCTTTGGATTCCA+TGG | 0.425961 | 4_4:+50110114 | None:intergenic |
| TTTGATTTGGTTATCGAGAA+AGG | 0.436453 | 4_4:-50110303 | Msa0685850:CDS |
| GCTACAGTTGCCGTTGTCGT+CGG | 0.450317 | 4_4:+50111469 | None:intergenic |
| CTACAGTTGCCGTTGTCGTC+GGG | 0.455982 | 4_4:+50111470 | None:intergenic |
| CTTCACTTTCTAACTCCTCA+TGG | 0.461373 | 4_4:+50108977 | None:intergenic |
| CAGAGGAATTGGGTGTGAGA+TGG | 0.462348 | 4_4:+50111242 | None:intergenic |
| CCTAGCGCCGCCGGACAAAA+CGG | 0.470816 | 4_4:+50111521 | None:intergenic |
| TTGAATGATGTGACGAAAAT+GGG | 0.471196 | 4_4:+50111267 | None:intergenic |
| TTCTCTCTTTCAGGGATGAG+AGG | 0.477120 | 4_4:-50111330 | Msa0685850:intron |
| AATTCCTCTGTACTCGAGCT+TGG | 0.483015 | 4_4:-50111229 | Msa0685850:CDS |
| CCACATTGAAAGGTGTTCAC+AGG | 0.484252 | 4_4:-50110074 | Msa0685850:CDS |
| CAAAATCGTTTAGTTTCTCA+AGG | 0.490967 | 4_4:-50111112 | Msa0685850:CDS |
| TTGTCCGGCGGCGCTAGGGT+TGG | 0.496171 | 4_4:-50111516 | Msa0685850:five_prime_UTR |
| TTTGAACAGCAACATGAGAA+AGG | 0.496949 | 4_4:+50111140 | None:intergenic |
| AGCTCGAGTACAGAGGAATT+GGG | 0.499953 | 4_4:+50111232 | None:intergenic |
| TTAATGCACCGGATTTCAGC+TGG | 0.501862 | 4_4:-50109906 | Msa0685850:CDS |
| TCTGTACTCGAGCTTGGATG+TGG | 0.506204 | 4_4:-50111223 | Msa0685850:CDS |
| TCAACAGACCAGCTGAAATC+CGG | 0.509055 | 4_4:+50109898 | None:intergenic |
| CACATTGAAAGGTGTTCACA+GGG | 0.510309 | 4_4:-50110073 | Msa0685850:CDS |
| AAGGTCAATGCAAGTAATGT+TGG | 0.513041 | 4_4:+50111159 | None:intergenic |
| TTTCAATGTGGACATGACCT+TGG | 0.513884 | 4_4:+50110086 | None:intergenic |
| TTTGAAGGATGTATTGTTCG+TGG | 0.515742 | 4_4:-50110148 | Msa0685850:intron |
| TCAAAACACTCATCGTCAAA+AGG | 0.520279 | 4_4:+50110321 | None:intergenic |
| ACTTCCAACCCTAGCGCCGC+CGG | 0.524672 | 4_4:+50111512 | None:intergenic |
| ATTTCAGCTGGTCTGTTGAG+TGG | 0.525474 | 4_4:-50109894 | Msa0685850:CDS |
| GCGCCCTATATTTAATGCAC+CGG | 0.527854 | 4_4:-50109917 | Msa0685850:CDS |
| ATACCTCCTTCAGAGTAAAT+GGG | 0.529777 | 4_4:+50108859 | None:intergenic |
| GAGTTAGACTTGCATTGCGT+GGG | 0.531187 | 4_4:+50108691 | None:intergenic |
| TTAGTTTCTCAAGGATTCAA+AGG | 0.532477 | 4_4:-50111103 | Msa0685850:intron |
| AGGTACGCTGATGCAGTTGA+GGG | 0.535876 | 4_4:+50111445 | None:intergenic |
| TTTCGGGCTTTGGATTCCAT+GGG | 0.537272 | 4_4:+50110115 | None:intergenic |
| AAGGTCATGTCCACATTGAA+AGG | 0.542953 | 4_4:-50110084 | Msa0685850:CDS |
| TGAGTTAGACTTGCATTGCG+TGG | 0.545070 | 4_4:+50108690 | None:intergenic |
| ATTAGTGAATACCAGTAAGA+AGG | 0.546958 | 4_4:+50111418 | None:intergenic |
| TTGCCACGCCTGCACTCAGT+TGG | 0.556183 | 4_4:+50111550 | None:intergenic |
| AAAGCAGCAAAATTTAGCTC+CGG | 0.556858 | 4_4:-50108668 | Msa0685850:three_prime_UTR |
| GATGTATTGTTCGTGGATAG+TGG | 0.567892 | 4_4:-50110141 | Msa0685850:CDS |
| CGAAACACACCCGACGACAA+CGG | 0.571642 | 4_4:-50111479 | Msa0685850:CDS |
| TGTCCAACTGAGTGCAGGCG+TGG | 0.577607 | 4_4:-50111553 | None:intergenic |
| AAGGTACGCTGATGCAGTTG+AGG | 0.595944 | 4_4:+50111444 | None:intergenic |
| AATATAGGGCGCCTGAAATG+TGG | 0.601319 | 4_4:+50109928 | None:intergenic |
| ACTTCAATCTTCTTAACAGG+TGG | 0.607989 | 4_4:+50109018 | None:intergenic |
| AAAGCCCGAAACTATGTCCA+AGG | 0.612081 | 4_4:-50110103 | Msa0685850:CDS |
| GAGGAATTGGGTGTGAGATG+GGG | 0.615697 | 4_4:+50111244 | None:intergenic |
| TGACCCATTTACTCTGAAGG+AGG | 0.619609 | 4_4:-50108862 | Msa0685850:three_prime_UTR |
| TATTATGTTTGGTATCACGA+TGG | 0.621312 | 4_4:-50108718 | Msa0685850:three_prime_UTR |
| TCGTGGATAGTGGTGACCCA+TGG | 0.650075 | 4_4:-50110131 | Msa0685850:CDS |
| CTAGGGTTGGAAGTCAACAA+TGG | 0.653241 | 4_4:-50111503 | Msa0685850:exon |
| TCATGGAACAGATTAAAATG+TGG | 0.663614 | 4_4:+50108994 | None:intergenic |
| TGTGATGGCTTGTATAACGA+TGG | 0.668784 | 4_4:-50111187 | Msa0685850:CDS |
| CCTGTGAACACCTTTCAATG+TGG | 0.670686 | 4_4:+50110074 | None:intergenic |
| ACATCCAAGCTCGAGTACAG+AGG | 0.684098 | 4_4:+50111225 | None:intergenic |
| GGAAACTCACAAATGTGTGA+TGG | 0.698096 | 4_4:-50111202 | Msa0685850:CDS |
| CAGGGATGAGAGGTTCACGA+AGG | 0.711423 | 4_4:-50111320 | Msa0685850:CDS |
| GTATACTAGATATAGCAAAG+TGG | 0.733318 | 4_4:-50108810 | Msa0685850:three_prime_UTR |
| CGAAGGAAGAGAAATACGAG+TGG | 0.736788 | 4_4:-50111303 | Msa0685850:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTATCTCAATAACTTT+TGG | - | chr4_4:50110184-50110203 | Msa0685850:intron | 15.0% |
| !!! | AAATCTAAGAAATAATTTGT+TGG | - | chr4_4:50110601-50110620 | Msa0685850:intron | 15.0% |
| !! | ATTTATATATGAAACTACAT+TGG | + | chr4_4:50110717-50110736 | None:intergenic | 15.0% |
| !!! | TTGTCTTAATTGTTAATTTT+AGG | - | chr4_4:50111385-50111404 | Msa0685850:intron | 15.0% |
| !! | AAAACAACTTATAGCTTATA+CGG | - | chr4_4:50109500-50109519 | Msa0685850:intron | 20.0% |
| !! | CTGAAAATAATATCATAAGT+TGG | + | chr4_4:50109610-50109629 | None:intergenic | 20.0% |
| !!! | CAACTTATGATATTATTTTC+AGG | - | chr4_4:50109608-50109627 | Msa0685850:intron | 20.0% |
| !!! | TCTTTTAATGATGATTTACT+TGG | - | chr4_4:50109676-50109695 | Msa0685850:intron | 20.0% |
| !!! | CTTTTAATGATGATTTACTT+GGG | - | chr4_4:50109677-50109696 | Msa0685850:intron | 20.0% |
| !!! | TTTTAATGATGATTTACTTG+GGG | - | chr4_4:50109678-50109697 | Msa0685850:intron | 20.0% |
| !!! | TAATGGATTTGTTTTGTATA+TGG | - | chr4_4:50109726-50109745 | Msa0685850:intron | 20.0% |
| !! | TTTGTATATGGTTTAAACTT+TGG | - | chr4_4:50109738-50109757 | Msa0685850:intron | 20.0% |
| !! | ACAATCTAAACTAACAATTA+TGG | - | chr4_4:50109990-50110009 | Msa0685850:intron | 20.0% |
| !!! | TATGTTAACTTTGATTTTGA+AGG | - | chr4_4:50110054-50110073 | Msa0685850:CDS | 20.0% |
| !!! | TTTTAAGAACATTAGAATCA+AGG | + | chr4_4:50110259-50110278 | None:intergenic | 20.0% |
| !! | AAGTTTATAATGTGATATCA+GGG | + | chr4_4:50110524-50110543 | None:intergenic | 20.0% |
| !! | TTCTTAGATTTACATCAAAT+CGG | + | chr4_4:50110592-50110611 | None:intergenic | 20.0% |
| !!! | AAGTTGTTTAATTCTAGTTT+TGG | - | chr4_4:50111037-50111056 | Msa0685850:intron | 20.0% |
| !!! | TTTAATTCTAGTTTTGGTTA+GGG | - | chr4_4:50111043-50111062 | Msa0685850:intron | 20.0% |
| !!! | AATATATTCAAAGTGCTATA+TGG | - | chr4_4:50111468-50111487 | Msa0685850:CDS | 20.0% |
| !!! | TGGAAAAGTTTTATTATGTT+TGG | - | chr4_4:50111488-50111507 | Msa0685850:exon | 20.0% |
| ! | ATAAGTTACATAGTAGTAGA+AGG | + | chr4_4:50109148-50109167 | None:intergenic | 25.0% |
| ! | GTAATGTTTCGTGAAATTAT+TGG | - | chr4_4:50109194-50109213 | Msa0685850:intron | 25.0% |
| !!! | TTTTTCAATTAAGACGATAG+AGG | - | chr4_4:50109279-50109298 | Msa0685850:intron | 25.0% |
| ! | TTTAATGATGATTTACTTGG+GGG | - | chr4_4:50109679-50109698 | Msa0685850:intron | 25.0% |
| !!! | GTTTTGGTAGATATAAGTAA+TGG | - | chr4_4:50109709-50109728 | Msa0685850:intron | 25.0% |
| !! | AATTTTCCTTTGTCCTTTAA+TGG | - | chr4_4:50109955-50109974 | Msa0685850:intron | 25.0% |
| ! | AAAATTCCATTAAAGGACAA+AGG | + | chr4_4:50109964-50109983 | None:intergenic | 25.0% |
| !! | TTTGTCCTTTAATGGAATTT+TGG | - | chr4_4:50109963-50109982 | Msa0685850:intron | 25.0% |
| ! | ATTGAGATAAATATGCCATT+TGG | + | chr4_4:50110178-50110197 | None:intergenic | 25.0% |
| !!! | TTTTGTGTATGTTCTAAAGA+AGG | - | chr4_4:50110372-50110391 | Msa0685850:intron | 25.0% |
| ! | AAAAAAAAAATGAGGCTGTA+TGG | + | chr4_4:50110406-50110425 | None:intergenic | 25.0% |
| ! | AGTTTATAATGTGATATCAG+GGG | + | chr4_4:50110523-50110542 | None:intergenic | 25.0% |
| ! | CAAGTTTATAATGTGATATC+AGG | + | chr4_4:50110525-50110544 | None:intergenic | 25.0% |
| ! | CTGATATCACATTATAAACT+TGG | - | chr4_4:50110523-50110542 | Msa0685850:intron | 25.0% |
| !! | ATTTCTTTTCACAAAGTTAC+TGG | - | chr4_4:50110669-50110688 | Msa0685850:intron | 25.0% |
| ! | AAAGTTACTGGATTTATAAG+TGG | - | chr4_4:50110681-50110700 | Msa0685850:intron | 25.0% |
| ! | CTTTGCAATGATATAGAAAA+TGG | - | chr4_4:50110827-50110846 | Msa0685850:intron | 25.0% |
| ! | AAATCTATCTGATTATCATG+AGG | + | chr4_4:50110864-50110883 | None:intergenic | 25.0% |
| ! | ATAATCAGATAGATTTCATC+AGG | - | chr4_4:50110868-50110887 | Msa0685850:intron | 25.0% |
| ! | AGAAAAAAACAATACTGTAC+TGG | + | chr4_4:50110901-50110920 | None:intergenic | 25.0% |
| !!! | GTTTAATTCTAGTTTTGGTT+AGG | - | chr4_4:50111042-50111061 | Msa0685850:intron | 25.0% |
| AATACCAGTAAGAAGGATTA+AGG | + | chr4_4:50108795-50108814 | None:intergenic | 30.0% | |
| ATTAGTGAATACCAGTAAGA+AGG | + | chr4_4:50108802-50108821 | None:intergenic | 30.0% | |
| AGTTCAGAAAAATGACTAGA+AGG | + | chr4_4:50108838-50108857 | None:intergenic | 30.0% | |
| ! | TTTCATTGTTTCTCTCTTTC+AGG | - | chr4_4:50108878-50108897 | Msa0685850:three_prime_UTR | 30.0% |
| ! | TTCATTGTTTCTCTCTTTCA+GGG | - | chr4_4:50108879-50108898 | Msa0685850:three_prime_UTR | 30.0% |
| TTGAATGATGTGACGAAAAT+GGG | + | chr4_4:50108953-50108972 | None:intergenic | 30.0% | |
| ! | CAAAATCGTTTAGTTTCTCA+AGG | - | chr4_4:50109105-50109124 | Msa0685850:intron | 30.0% |
| TTAGTTTCTCAAGGATTCAA+AGG | - | chr4_4:50109114-50109133 | Msa0685850:intron | 30.0% | |
| TCTCATTATCTGATTCTGTT+TGG | - | chr4_4:50109784-50109803 | Msa0685850:intron | 30.0% | |
| !! | TTTGATTTGGTTATCGAGAA+AGG | - | chr4_4:50109914-50109933 | Msa0685850:CDS | 30.0% |
| GAAAGGAACTATGGTAAATT+AGG | - | chr4_4:50109931-50109950 | Msa0685850:CDS | 30.0% | |
| TGAAGCCAAAATTCCATTAA+AGG | + | chr4_4:50109971-50109990 | None:intergenic | 30.0% | |
| AATCCGGTGCATTAAATATA+GGG | + | chr4_4:50110306-50110325 | None:intergenic | 30.0% | |
| AAATCCGGTGCATTAAATAT+AGG | + | chr4_4:50110307-50110326 | None:intergenic | 30.0% | |
| !!! | GTCTGCTTTTTGATATATTG+AGG | - | chr4_4:50110456-50110475 | Msa0685850:intron | 30.0% |
| ! | ATGATAGATGAACATTTTCC+AGG | - | chr4_4:50111150-50111169 | Msa0685850:CDS | 30.0% |
| ! | TGATAGATGAACATTTTCCA+GGG | - | chr4_4:50111151-50111170 | Msa0685850:CDS | 30.0% |
| TCATGGAACAGATTAAAATG+TGG | + | chr4_4:50111226-50111245 | None:intergenic | 30.0% | |
| !! | ACATTTTAATCTGTTCCATG+AGG | - | chr4_4:50111225-50111244 | Msa0685850:CDS | 30.0% |
| GTATACTAGATATAGCAAAG+TGG | - | chr4_4:50111407-50111426 | Msa0685850:intron | 30.0% | |
| TATTATGTTTGGTATCACGA+TGG | - | chr4_4:50111499-50111518 | Msa0685850:exon | 30.0% | |
| GTTGAATGATGTGACGAAAA+TGG | + | chr4_4:50108954-50108973 | None:intergenic | 35.0% | |
| AAGGTCAATGCAAGTAATGT+TGG | + | chr4_4:50109061-50109080 | None:intergenic | 35.0% | |
| TTTGAACAGCAACATGAGAA+AGG | + | chr4_4:50109080-50109099 | None:intergenic | 35.0% | |
| GAAAATGACAGTTACCAAAC+AGG | - | chr4_4:50109402-50109421 | Msa0685850:intron | 35.0% | |
| CATTACTCTACAAGTCAGTT+TGG | + | chr4_4:50109580-50109599 | None:intergenic | 35.0% | |
| !! | CAAACTGACTTGTAGAGTAA+TGG | - | chr4_4:50109578-50109597 | Msa0685850:intron | 35.0% |
| AGGACTTATAGTCTAATGTG+AGG | - | chr4_4:50109628-50109647 | Msa0685850:intron | 35.0% | |
| TCAAAACACTCATCGTCAAA+AGG | + | chr4_4:50109899-50109918 | None:intergenic | 35.0% | |
| !!! | TGACGATGAGTGTTTTGATT+TGG | - | chr4_4:50109901-50109920 | Msa0685850:CDS | 35.0% |
| TCTCAAGCTTAAGAACTGTA+GGG | + | chr4_4:50110017-50110036 | None:intergenic | 35.0% | |
| TTTGAAGGATGTATTGTTCG+TGG | - | chr4_4:50110069-50110088 | Msa0685850:CDS | 35.0% | |
| ! | TATCTCAATAACTTTTGGCC+AGG | - | chr4_4:50110189-50110208 | Msa0685850:intron | 35.0% |
| AAGAGTTCATTCTTCAAACC+TGG | + | chr4_4:50110210-50110229 | None:intergenic | 35.0% | |
| AGAACATTAGAATCAAGGCA+GGG | + | chr4_4:50110254-50110273 | None:intergenic | 35.0% | |
| AAGAACATTAGAATCAAGGC+AGG | + | chr4_4:50110255-50110274 | None:intergenic | 35.0% | |
| ! | AATGTGATATCAGGGGATTT+TGG | + | chr4_4:50110516-50110535 | None:intergenic | 35.0% |
| GGCAAAGATTTCTTCAATGA+AGG | - | chr4_4:50110622-50110641 | Msa0685850:intron | 35.0% | |
| GTTACTGGATTTATAAGTGG+AGG | - | chr4_4:50110684-50110703 | Msa0685850:intron | 35.0% | |
| ! | TTTCTTCCTTTTCTACCTTC+TGG | - | chr4_4:50110916-50110935 | Msa0685850:intron | 35.0% |
| AAACAACTTGAGCAAAACAC+AGG | + | chr4_4:50111026-50111045 | None:intergenic | 35.0% | |
| ACTTCAATCTTCTTAACAGG+TGG | + | chr4_4:50111202-50111221 | None:intergenic | 35.0% | |
| ! | TTTTGACCCATTTACTCTGA+AGG | - | chr4_4:50111352-50111371 | Msa0685850:intron | 35.0% |
| ATACCTCCTTCAGAGTAAAT+GGG | + | chr4_4:50111361-50111380 | None:intergenic | 35.0% | |
| CGTACCTTAATCCTTCTTAC+TGG | - | chr4_4:50108788-50108807 | Msa0685850:three_prime_UTR | 40.0% | |
| GGAAACTCACAAATGTGTGA+TGG | - | chr4_4:50109015-50109034 | Msa0685850:CDS | 40.0% | |
| ! | TGTGATGGCTTGTATAACGA+TGG | - | chr4_4:50109030-50109049 | Msa0685850:CDS | 40.0% |
| ACGACTAAAACAGACCTGTT+TGG | + | chr4_4:50109419-50109438 | None:intergenic | 40.0% | |
| !!! | ACAGGTCTGTTTTAGTCGTA+TGG | - | chr4_4:50109420-50109439 | Msa0685850:intron | 40.0% |
| AAGTTATCTTGCAGTCTGCT+TGG | + | chr4_4:50109476-50109495 | None:intergenic | 40.0% | |
| GATGATTTACTTGGGGGAAT+TGG | - | chr4_4:50109685-50109704 | Msa0685850:intron | 40.0% | |
| GGTTATCGAGAAAGGAACTA+TGG | - | chr4_4:50109922-50109941 | Msa0685850:CDS | 40.0% | |
| CTCTCAAGCTTAAGAACTGT+AGG | + | chr4_4:50110018-50110037 | None:intergenic | 40.0% | |
| GATGTATTGTTCGTGGATAG+TGG | - | chr4_4:50110076-50110095 | Msa0685850:CDS | 40.0% | |
| ATGACCTTGGACATAGTTTC+GGG | + | chr4_4:50110121-50110140 | None:intergenic | 40.0% | |
| CATGACCTTGGACATAGTTT+CGG | + | chr4_4:50110122-50110141 | None:intergenic | 40.0% | |
| TTTCAATGTGGACATGACCT+TGG | + | chr4_4:50110134-50110153 | None:intergenic | 40.0% | |
| AAGGTCATGTCCACATTGAA+AGG | - | chr4_4:50110133-50110152 | Msa0685850:CDS | 40.0% | |
| !! | CACATTGAAAGGTGTTCACA+GGG | - | chr4_4:50110144-50110163 | Msa0685850:CDS | 40.0% |
| !!! | CACAGGGTTTTGAAACCAAA+TGG | - | chr4_4:50110160-50110179 | Msa0685850:intron | 40.0% |
| ! | TCTGTTGAGTGGACAACTTT+TGG | - | chr4_4:50110334-50110353 | Msa0685850:CDS | 40.0% |
| AAAGAGCCAGAAGGTAGAAA+AGG | + | chr4_4:50110925-50110944 | None:intergenic | 40.0% | |
| !!! | TTCTACCTTCTGGCTCTTTT+CGG | - | chr4_4:50110926-50110945 | Msa0685850:intron | 40.0% |
| GTAACACAACTCTCCATCAA+AGG | + | chr4_4:50111001-50111020 | None:intergenic | 40.0% | |
| !!! | TCTAGTTTTGGTTAGGGAAG+AGG | - | chr4_4:50111049-50111068 | Msa0685850:intron | 40.0% |
| GAGTATGCACGAGATTGATA+AGG | - | chr4_4:50111071-50111090 | Msa0685850:intron | 40.0% | |
| GGCACTTCAATCTTCTTAAC+AGG | + | chr4_4:50111205-50111224 | None:intergenic | 40.0% | |
| CTTCACTTTCTAACTCCTCA+TGG | + | chr4_4:50111243-50111262 | None:intergenic | 40.0% | |
| CATACCTCCTTCAGAGTAAA+TGG | + | chr4_4:50111362-50111381 | None:intergenic | 40.0% | |
| ! | GCAATTGTCACCGTTTTGTC+CGG | - | chr4_4:50108686-50108705 | Msa0685850:three_prime_UTR | 45.0% |
| CTAGGGTTGGAAGTCAACAA+TGG | - | chr4_4:50108714-50108733 | Msa0685850:three_prime_UTR | 45.0% | |
| TTCTCTCTTTCAGGGATGAG+AGG | - | chr4_4:50108887-50108906 | Msa0685850:three_prime_UTR | 45.0% | |
| CGAAGGAAGAGAAATACGAG+TGG | - | chr4_4:50108914-50108933 | Msa0685850:three_prime_UTR | 45.0% | |
| AGAGGAATTGGGTGTGAGAT+GGG | + | chr4_4:50108977-50108996 | None:intergenic | 45.0% | |
| AGCTCGAGTACAGAGGAATT+GGG | + | chr4_4:50108988-50109007 | None:intergenic | 45.0% | |
| AAGCTCGAGTACAGAGGAAT+TGG | + | chr4_4:50108989-50109008 | None:intergenic | 45.0% | |
| AATTCCTCTGTACTCGAGCT+TGG | - | chr4_4:50108988-50109007 | Msa0685850:CDS | 45.0% | |
| !! | GTAGCGATTGAGGCTTTGTT+TGG | + | chr4_4:50109558-50109577 | None:intergenic | 45.0% |
| !! | AGTCAGTTTGGTAGCGATTG+AGG | + | chr4_4:50109568-50109587 | None:intergenic | 45.0% |
| !! | ACTTGGGGGAATTGGTGTTT+TGG | - | chr4_4:50109693-50109712 | Msa0685850:intron | 45.0% |
| !! | TTTCGGGCTTTGGATTCCAT+GGG | + | chr4_4:50110105-50110124 | None:intergenic | 45.0% |
| TTGGACATAGTTTCGGGCTT+TGG | + | chr4_4:50110115-50110134 | None:intergenic | 45.0% | |
| AAAGCCCGAAACTATGTCCA+AGG | - | chr4_4:50110114-50110133 | Msa0685850:CDS | 45.0% | |
| CCTGTGAACACCTTTCAATG+TGG | + | chr4_4:50110146-50110165 | None:intergenic | 45.0% | |
| !! | CCACATTGAAAGGTGTTCAC+AGG | - | chr4_4:50110143-50110162 | Msa0685850:CDS | 45.0% |
| ATTCATGCCAGCCACATTTC+AGG | - | chr4_4:50110278-50110297 | Msa0685850:intron | 45.0% | |
| ! | AATATAGGGCGCCTGAAATG+TGG | + | chr4_4:50110292-50110311 | None:intergenic | 45.0% |
| GCGCCCTATATTTAATGCAC+CGG | - | chr4_4:50110300-50110319 | Msa0685850:CDS | 45.0% | |
| TTAATGCACCGGATTTCAGC+TGG | - | chr4_4:50110311-50110330 | Msa0685850:CDS | 45.0% | |
| TCAACAGACCAGCTGAAATC+CGG | + | chr4_4:50110322-50110341 | None:intergenic | 45.0% | |
| ! | ATTTCAGCTGGTCTGTTGAG+TGG | - | chr4_4:50110323-50110342 | Msa0685850:CDS | 45.0% |
| !! | TATTGAGGTGCTGCTACCAA+AGG | - | chr4_4:50110471-50110490 | Msa0685850:intron | 45.0% |
| AACACATACGTTCGAGCCTT+TGG | + | chr4_4:50110490-50110509 | None:intergenic | 45.0% | |
| CGGTCACTGTAGTACAAAAC+TGG | + | chr4_4:50110572-50110591 | None:intergenic | 45.0% | |
| !!! | TTTTCGGAGCTTGCTACACA+TGG | - | chr4_4:50110942-50110961 | Msa0685850:intron | 45.0% |
| AGGGGGATTCATCCAATCTT+TGG | - | chr4_4:50110966-50110985 | Msa0685850:intron | 45.0% | |
| ACACAACTCTCCATCAAAGG+CGG | + | chr4_4:50110998-50111017 | None:intergenic | 45.0% | |
| CAACTTGAGCAAAACACAGG+TGG | + | chr4_4:50111023-50111042 | None:intergenic | 45.0% | |
| ! | TGAACATTTTCCAGGGACAG+AGG | - | chr4_4:50111158-50111177 | Msa0685850:CDS | 45.0% |
| ! | TGACCCATTTACTCTGAAGG+AGG | - | chr4_4:50111355-50111374 | Msa0685850:intron | 45.0% |
| GAGTTAGACTTGCATTGCGT+GGG | + | chr4_4:50111529-50111548 | None:intergenic | 45.0% | |
| TGAGTTAGACTTGCATTGCG+TGG | + | chr4_4:50111530-50111549 | None:intergenic | 45.0% | |
| !! | ATTAAAAAAAAAAAAAAATG+AGG | + | chr4_4:50110414-50110433 | None:intergenic | 5.0% |
| ! | ATTGTCACCGTTTTGTCCGG+CGG | - | chr4_4:50108689-50108708 | Msa0685850:three_prime_UTR | 50.0% |
| AGGTACGCTGATGCAGTTGA+GGG | + | chr4_4:50108775-50108794 | None:intergenic | 50.0% | |
| AAGGTACGCTGATGCAGTTG+AGG | + | chr4_4:50108776-50108795 | None:intergenic | 50.0% | |
| GAGGAATTGGGTGTGAGATG+GGG | + | chr4_4:50108976-50108995 | None:intergenic | 50.0% | |
| CAGAGGAATTGGGTGTGAGA+TGG | + | chr4_4:50108978-50108997 | None:intergenic | 50.0% | |
| ACATCCAAGCTCGAGTACAG+AGG | + | chr4_4:50108995-50109014 | None:intergenic | 50.0% | |
| TCTGTACTCGAGCTTGGATG+TGG | - | chr4_4:50108994-50109013 | Msa0685850:CDS | 50.0% | |
| !! | GTTTCGGGCTTTGGATTCCA+TGG | + | chr4_4:50110106-50110125 | None:intergenic | 50.0% |
| AAGCTCCGAAAAGAGCCAGA+AGG | + | chr4_4:50110934-50110953 | None:intergenic | 50.0% | |
| !! | GGAGCTTGCTACACATGGAA+GGG | - | chr4_4:50110947-50110966 | Msa0685850:intron | 50.0% |
| !! | GAGCTTGCTACACATGGAAG+GGG | - | chr4_4:50110948-50110967 | Msa0685850:intron | 50.0% |
| !! | AGCTTGCTACACATGGAAGG+GGG | - | chr4_4:50110949-50110968 | Msa0685850:intron | 50.0% |
| CACAACTCTCCATCAAAGGC+GGG | + | chr4_4:50110997-50111016 | None:intergenic | 50.0% | |
| CGAAACACACCCGACGACAA+CGG | - | chr4_4:50108738-50108757 | Msa0685850:three_prime_UTR | 55.0% | |
| CTACAGTTGCCGTTGTCGTC+GGG | + | chr4_4:50108750-50108769 | None:intergenic | 55.0% | |
| GCTACAGTTGCCGTTGTCGT+CGG | + | chr4_4:50108751-50108770 | None:intergenic | 55.0% | |
| CAGGGATGAGAGGTTCACGA+AGG | - | chr4_4:50108897-50108916 | Msa0685850:three_prime_UTR | 55.0% | |
| ! | TCGTGGATAGTGGTGACCCA+TGG | - | chr4_4:50110086-50110105 | Msa0685850:CDS | 55.0% |
| !! | CGGAGCTTGCTACACATGGA+AGG | - | chr4_4:50110946-50110965 | Msa0685850:intron | 55.0% |
| AGGCGGGTAGAGCCAAAGAT+TGG | + | chr4_4:50110981-50111000 | None:intergenic | 55.0% | |
| !! | TTGGCTCTACCCGCCTTTGA+TGG | - | chr4_4:50110985-50111004 | Msa0685850:intron | 55.0% |
| CATGTGATGACCTCTGTCCC+TGG | + | chr4_4:50111171-50111190 | None:intergenic | 55.0% | |
| ! | TAGGGCGCCTGAAATGTGGC+TGG | + | chr4_4:50110288-50110307 | None:intergenic | 60.0% |
| CCTAGCGCCGCCGGACAAAA+CGG | + | chr4_4:50108699-50108718 | None:intergenic | 65.0% | |
| ! | CGTTTTGTCCGGCGGCGCTA+GGG | - | chr4_4:50108697-50108716 | Msa0685850:three_prime_UTR | 65.0% |
| ACTTCCAACCCTAGCGCCGC+CGG | + | chr4_4:50108708-50108727 | None:intergenic | 65.0% | |
| ! | CCGTTTTGTCCGGCGGCGCT+AGG | - | chr4_4:50108696-50108715 | Msa0685850:three_prime_UTR | 70.0% |
| TTGTCCGGCGGCGCTAGGGT+TGG | - | chr4_4:50108701-50108720 | Msa0685850:three_prime_UTR | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 50108668 | 50111571 | 50108668 | ID=Msa0685850;Name=Msa0685850 |
| chr4_4 | mRNA | 50108668 | 50111571 | 50108668 | ID=Msa0685850-mRNA-1;Parent=Msa0685850;Name=Msa0685850-mRNA-1;_AED=0.12;_eAED=0.12;_QI=65|1|1|1|1|1|6|268|255 |
| chr4_4 | exon | 50108668 | 50109067 | 50108668 | ID=Msa0685850-mRNA-1:exon:12751;Parent=Msa0685850-mRNA-1 |
| chr4_4 | exon | 50109846 | 50109950 | 50109846 | ID=Msa0685850-mRNA-1:exon:12750;Parent=Msa0685850-mRNA-1 |
| chr4_4 | exon | 50110029 | 50110163 | 50110029 | ID=Msa0685850-mRNA-1:exon:12749;Parent=Msa0685850-mRNA-1 |
| chr4_4 | exon | 50110296 | 50110378 | 50110296 | ID=Msa0685850-mRNA-1:exon:12748;Parent=Msa0685850-mRNA-1 |
| chr4_4 | exon | 50111104 | 50111339 | 50111104 | ID=Msa0685850-mRNA-1:exon:12747;Parent=Msa0685850-mRNA-1 |
| chr4_4 | exon | 50111430 | 50111571 | 50111430 | ID=Msa0685850-mRNA-1:exon:12746;Parent=Msa0685850-mRNA-1 |
| chr4_4 | five_prime_UTR | 50111507 | 50111571 | 50111507 | ID=Msa0685850-mRNA-1:five_prime_utr;Parent=Msa0685850-mRNA-1 |
| chr4_4 | CDS | 50111430 | 50111506 | 50111430 | ID=Msa0685850-mRNA-1:cds;Parent=Msa0685850-mRNA-1 |
| chr4_4 | CDS | 50111104 | 50111339 | 50111104 | ID=Msa0685850-mRNA-1:cds;Parent=Msa0685850-mRNA-1 |
| chr4_4 | CDS | 50110296 | 50110378 | 50110296 | ID=Msa0685850-mRNA-1:cds;Parent=Msa0685850-mRNA-1 |
| chr4_4 | CDS | 50110029 | 50110163 | 50110029 | ID=Msa0685850-mRNA-1:cds;Parent=Msa0685850-mRNA-1 |
| chr4_4 | CDS | 50109846 | 50109950 | 50109846 | ID=Msa0685850-mRNA-1:cds;Parent=Msa0685850-mRNA-1 |
| chr4_4 | CDS | 50108936 | 50109067 | 50108936 | ID=Msa0685850-mRNA-1:cds;Parent=Msa0685850-mRNA-1 |
| chr4_4 | three_prime_UTR | 50108668 | 50108935 | 50108668 | ID=Msa0685850-mRNA-1:three_prime_utr;Parent=Msa0685850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
