Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0646320 | XP_013456357.1 | 96.863 | 255 | 8 | 0 | 1 | 255 | 1 | 255 | 0.0 | 522 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0646320 | sp|P0DPD7|EFMT4_HUMAN | 34.016 | 244 | 152 | 3 | 14 | 250 | 14 | 255 | 2.52e-42 | 147 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0605140 | Msa0646320 | 0.829218 | 5.821532e-55 | -8.615850e-47 |
| Msa0605200 | Msa0646320 | 0.829651 | 4.569256e-55 | -8.615850e-47 |
| Msa0646320 | Msa0685850 | 0.815996 | 6.943216e-52 | -8.615850e-47 |
| Msa0549690 | Msa0646320 | 0.862637 | 4.400196e-64 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0646320 | MtrunA17_Chr4g0034381 | 96.863 | 255 | 8 | 0 | 1 | 255 | 1 | 255 | 0.0 | 522 |
| Msa0646320 | MtrunA17_Chr4g0020211 | 30.270 | 185 | 117 | 4 | 12 | 194 | 5 | 179 | 7.43e-26 | 102 |
| Msa0646320 | MtrunA17_Chr2g0297031 | 29.630 | 189 | 117 | 7 | 19 | 195 | 7 | 191 | 1.09e-19 | 85.5 |
| Msa0646320 | MtrunA17_Chr8g0378231 | 33.333 | 180 | 97 | 8 | 26 | 194 | 25 | 192 | 2.39e-18 | 84.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0646320 | AT4G34360.1 | 65.289 | 242 | 82 | 1 | 11 | 252 | 6 | 245 | 3.02e-122 | 348 |
| Msa0646320 | AT3G60910.1 | 28.972 | 214 | 140 | 4 | 20 | 231 | 13 | 216 | 1.74e-28 | 109 |
| Msa0646320 | AT3G17365.1 | 33.505 | 194 | 105 | 8 | 10 | 198 | 2 | 176 | 4.58e-25 | 99.8 |
| Msa0646320 | AT3G17365.2 | 28.700 | 223 | 115 | 9 | 10 | 198 | 2 | 214 | 1.26e-18 | 83.2 |
| Msa0646320 | AT2G31740.1 | 26.316 | 190 | 119 | 5 | 16 | 194 | 19 | 198 | 4.97e-15 | 74.7 |
| Msa0646320 | AT3G60910.2 | 27.439 | 164 | 108 | 3 | 69 | 231 | 1 | 154 | 8.55e-15 | 71.2 |
Find 86 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTAAATTATAGTCGTTTA+AGG | 0.102919 | 4_3:+52054830 | Msa0646320:three_prime_UTR |
| TCCACTAACTACAATTAATA+AGG | 0.217850 | 4_3:-52054928 | None:intergenic |
| TTTGAAAGTGACAGTTAAAT+AGG | 0.236024 | 4_3:-52054693 | None:intergenic |
| TACAAAAGTGACACTTAAAA+AGG | 0.260629 | 4_3:-52054657 | None:intergenic |
| GCAAAATCGTTTACTTTCTC+AGG | 0.281452 | 4_3:+52052427 | Msa0646320:CDS |
| AGGTTTGTACACGGTTATTA+AGG | 0.287387 | 4_3:+52054850 | Msa0646320:three_prime_UTR |
| ATATTTATCTCAATAACTTT+TGG | 0.294771 | 4_3:+52053502 | Msa0646320:CDS |
| TTGGACATAGTTTCGGGCTT+TGG | 0.296551 | 4_3:-52053430 | None:intergenic |
| ATTCATGCCAGCCACATTTC+AGG | 0.301834 | 4_3:+52053596 | Msa0646320:intron |
| GTTGAATGATGTGACGAAAA+TGG | 0.306994 | 4_3:-52052274 | None:intergenic |
| AATAAATAAAGGTATATTAC+TGG | 0.321346 | 4_3:+52054973 | Msa0646320:three_prime_UTR |
| AAATCCGGTGCATTAAATAT+AGG | 0.331855 | 4_3:-52053622 | None:intergenic |
| CCCTTATTAATTGTAGTTAG+TGG | 0.335556 | 4_3:+52054927 | Msa0646320:three_prime_UTR |
| GGCACTTCAATCTTCTTAAC+AGG | 0.339241 | 4_3:-52054520 | None:intergenic |
| AAGCTCGAGTACAGAGGAAT+TGG | 0.341672 | 4_3:-52052309 | None:intergenic |
| TATTAAGGAAATGATTAGTT+TGG | 0.352807 | 4_3:+52054865 | Msa0646320:three_prime_UTR |
| AATACCAGTAAGAAGGATTA+AGG | 0.357541 | 4_3:-52052113 | None:intergenic |
| CGTACCTTAATCCTTCTTAC+TGG | 0.358053 | 4_3:+52052109 | Msa0646320:CDS |
| TGATGAAATTCAATAAATAA+AGG | 0.358298 | 4_3:+52054962 | Msa0646320:three_prime_UTR |
| CATGACCTTGGACATAGTTT+CGG | 0.360959 | 4_3:-52053437 | None:intergenic |
| TCTGTTGAGTGGACAACTTT+TGG | 0.374812 | 4_3:+52053652 | Msa0646320:CDS |
| ATTGAGATAAATATGCCATT+TGG | 0.404045 | 4_3:-52053493 | None:intergenic |
| AGAGGAATTGGGTGTGAGAT+GGG | 0.404822 | 4_3:-52052297 | None:intergenic |
| CCACTAACTACAATTAATAA+GGG | 0.405428 | 4_3:-52054927 | None:intergenic |
| CTCTCCACAATAAATAACTA+AGG | 0.415475 | 4_3:-52054754 | None:intergenic |
| GGTTATCGAGAAAGGAACTA+TGG | 0.416741 | 4_3:+52053246 | Msa0646320:CDS |
| ATGACCTTGGACATAGTTTC+GGG | 0.418705 | 4_3:-52053436 | None:intergenic |
| AATCCGGTGCATTAAATATA+GGG | 0.420986 | 4_3:-52053621 | None:intergenic |
| GTTTCGGGCTTTGGATTCCA+TGG | 0.425961 | 4_3:-52053421 | None:intergenic |
| TTTGATTTGGTTATCGAGAA+AGG | 0.436453 | 4_3:+52053238 | Msa0646320:CDS |
| GCTACAGTTGCCGTTGTCGT+CGG | 0.450317 | 4_3:-52052069 | None:intergenic |
| TTTGAAGGATGTATTGTTCG+TGG | 0.454245 | 4_3:+52053387 | Msa0646320:intron |
| CTACAGTTGCCGTTGTCGTC+GGG | 0.455982 | 4_3:-52052068 | None:intergenic |
| CTTCACTTTCTAACTCCTCA+TGG | 0.461373 | 4_3:-52054558 | None:intergenic |
| CAGAGGAATTGGGTGTGAGA+TGG | 0.462348 | 4_3:-52052298 | None:intergenic |
| TTGAATGATGTGACGAAAAT+GGG | 0.471196 | 4_3:-52052273 | None:intergenic |
| TTCTCTCTTTCAGGGATGAG+AGG | 0.477120 | 4_3:+52052210 | Msa0646320:intron |
| AATTCCTCTGTACTCGAGCT+TGG | 0.483015 | 4_3:+52052311 | Msa0646320:CDS |
| CCACATTGAAAGGTGTTCAC+AGG | 0.484252 | 4_3:+52053461 | Msa0646320:CDS |
| CCTAGCACCGCCGGACAAAA+CGG | 0.489251 | 4_3:-52052017 | None:intergenic |
| TTTGAACAGCAACATGAGAA+AGG | 0.496949 | 4_3:-52052400 | None:intergenic |
| AGCTCGAGTACAGAGGAATT+GGG | 0.499953 | 4_3:-52052308 | None:intergenic |
| TTAATGCACCGGATTTCAGC+TGG | 0.501862 | 4_3:+52053629 | Msa0646320:CDS |
| TCTGTACTCGAGCTTGGATG+TGG | 0.506204 | 4_3:+52052317 | Msa0646320:CDS |
| TTACCCTTAGTTATTTATTG+TGG | 0.506382 | 4_3:+52054750 | Msa0646320:three_prime_UTR |
| TCAACAGACCAGCTGAAATC+CGG | 0.509055 | 4_3:-52053637 | None:intergenic |
| CACATTGAAAGGTGTTCACA+GGG | 0.510309 | 4_3:+52053462 | Msa0646320:CDS |
| AAGGTCAATGCAAGTAATGT+TGG | 0.513041 | 4_3:-52052381 | None:intergenic |
| TTTCAATGTGGACATGACCT+TGG | 0.513884 | 4_3:-52053449 | None:intergenic |
| CAAAATCGTTTACTTTCTCA+GGG | 0.517884 | 4_3:+52052428 | Msa0646320:CDS |
| CTGCACTCAGTTGGACAAAA+CGG | 0.518983 | 4_3:-52051979 | None:intergenic |
| TCAAAACACTCATCGTCAAA+AGG | 0.520279 | 4_3:-52053220 | None:intergenic |
| TTACTTTCTCAGGGATTCAA+AGG | 0.522486 | 4_3:+52052437 | Msa0646320:CDS |
| ATTTCAGCTGGTCTGTTGAG+TGG | 0.525474 | 4_3:+52053641 | Msa0646320:CDS |
| GCGCCCTATATTTAATGCAC+CGG | 0.527854 | 4_3:+52053618 | Msa0646320:CDS |
| AGGTACGCCGATGCAGTTGA+GGG | 0.528333 | 4_3:-52052093 | None:intergenic |
| TTTCGGGCTTTGGATTCCAT+GGG | 0.537272 | 4_3:-52053420 | None:intergenic |
| TTGTCCGGCGGTGCTAGGGT+TGG | 0.541342 | 4_3:+52052022 | Msa0646320:five_prime_UTR |
| ATTTCCAACCCTAGCACCGC+CGG | 0.542380 | 4_3:-52052026 | None:intergenic |
| AAGGTCATGTCCACATTGAA+AGG | 0.542953 | 4_3:+52053451 | Msa0646320:CDS |
| ATTAGTGAATACCAGTAAGA+AGG | 0.546958 | 4_3:-52052120 | None:intergenic |
| TTGCCACGCCTGCACTCAGT+TGG | 0.560921 | 4_3:-52051988 | None:intergenic |
| GATGTATTGTTCGTGGATAG+TGG | 0.567892 | 4_3:+52053394 | Msa0646320:CDS |
| CGAAACACACCCGACGACAA+CGG | 0.571642 | 4_3:+52052059 | Msa0646320:CDS |
| TGTCCAACTGAGTGCAGGCG+TGG | 0.577607 | 4_3:+52051985 | Msa0646320:five_prime_UTR |
| TCTCCACAATAAATAACTAA+GGG | 0.579404 | 4_3:-52054753 | None:intergenic |
| AAGGTACGCCGATGCAGTTG+AGG | 0.583684 | 4_3:-52052094 | None:intergenic |
| AATATAGGGCGCCTGAAATG+TGG | 0.601319 | 4_3:-52053607 | None:intergenic |
| CGACTATAATTTAGAGACGG+AGG | 0.604117 | 4_3:-52054823 | None:intergenic |
| ACTTCAATCTTCTTAACAGG+TGG | 0.607989 | 4_3:-52054517 | None:intergenic |
| AAAGCCCGAAACTATGTCCA+AGG | 0.612081 | 4_3:+52053432 | Msa0646320:CDS |
| GAGGAATTGGGTGTGAGATG+GGG | 0.615697 | 4_3:-52052296 | None:intergenic |
| GACTATAATTTAGAGACGGA+GGG | 0.622572 | 4_3:-52054822 | None:intergenic |
| AAACGACTATAATTTAGAGA+CGG | 0.633680 | 4_3:-52054826 | None:intergenic |
| TCGTGGATAGTGGTGACCCA+TGG | 0.650075 | 4_3:+52053404 | Msa0646320:CDS |
| TGTAGCACCCTCAACTGCAT+CGG | 0.661050 | 4_3:+52052086 | Msa0646320:CDS |
| CTAGGGTTGGAAATCAACAA+TGG | 0.664753 | 4_3:+52052035 | Msa0646320:exon |
| TGTGATGGCTTGTATAACGA+TGG | 0.668784 | 4_3:+52052353 | Msa0646320:CDS |
| CCTGTGAACACCTTTCAATG+TGG | 0.670686 | 4_3:-52053461 | None:intergenic |
| AGTCGTTTAAGGTTTGTACA+CGG | 0.678757 | 4_3:+52054841 | Msa0646320:three_prime_UTR |
| ACATCCAAGCTCGAGTACAG+AGG | 0.684098 | 4_3:-52052315 | None:intergenic |
| TCATGGAACAGATTAAGATG+TGG | 0.692597 | 4_3:-52054541 | None:intergenic |
| GGAAACTCACAAATGTGTGA+TGG | 0.698096 | 4_3:+52052338 | Msa0646320:CDS |
| ACATCTTAATCTGTTCCATG+AGG | 0.704259 | 4_3:+52054543 | Msa0646320:CDS |
| CAGGGATGAGAGGTTCACGA+AGG | 0.711423 | 4_3:+52052220 | Msa0646320:intron |
| CGAAGGAAGAGAAATACGAG+TGG | 0.736788 | 4_3:+52052237 | Msa0646320:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTATCTCAATAACTTT+TGG | + | chr4_3:52053502-52053521 | Msa0646320:CDS | 15.0% |
| !! | ATTTATATATGAAACTACAT+TGG | - | chr4_3:52054035-52054054 | None:intergenic | 15.0% |
| !! | TGATGAAATTCAATAAATAA+AGG | + | chr4_3:52054962-52054981 | Msa0646320:three_prime_UTR | 15.0% |
| !! | AAAACAACTTATAGCTTATA+CGG | + | chr4_3:52052822-52052841 | Msa0646320:intron | 20.0% |
| !! | CTGAAAATAATATCATAAGT+TGG | - | chr4_3:52052934-52052953 | None:intergenic | 20.0% |
| !!! | CAACTTATGATATTATTTTC+AGG | + | chr4_3:52052932-52052951 | Msa0646320:intron | 20.0% |
| !!! | TCTTTTAATGATGATTTACT+TGG | + | chr4_3:52053000-52053019 | Msa0646320:intron | 20.0% |
| !!! | CTTTTAATGATGATTTACTT+GGG | + | chr4_3:52053001-52053020 | Msa0646320:intron | 20.0% |
| !!! | TTTTAATGATGATTTACTTG+GGG | + | chr4_3:52053002-52053021 | Msa0646320:intron | 20.0% |
| !!! | TAATGGATTTGTTTTGTATA+TGG | + | chr4_3:52053050-52053069 | Msa0646320:intron | 20.0% |
| !! | TTTGTATATGGTTTAAACTT+TGG | + | chr4_3:52053062-52053081 | Msa0646320:intron | 20.0% |
| !! | ACAATCTAAACTAACAATTA+TGG | + | chr4_3:52053314-52053333 | Msa0646320:intron | 20.0% |
| !!! | TGTGAATATGTTAATTTTGA+AGG | + | chr4_3:52053372-52053391 | Msa0646320:intron | 20.0% |
| !!! | TTTTAAGAACATTAGATTCA+AGG | - | chr4_3:52053577-52053596 | None:intergenic | 20.0% |
| !! | AAGTTTATAATGTGATATCA+GGG | - | chr4_3:52053842-52053861 | None:intergenic | 20.0% |
| !!! | AAGTTGTTTAATTCTAGTTT+TGG | + | chr4_3:52054355-52054374 | Msa0646320:intron | 20.0% |
| !!! | TTTAATTCTAGTTTTGGTTA+GGG | + | chr4_3:52054361-52054380 | Msa0646320:intron | 20.0% |
| !!! | TATTAAGGAAATGATTAGTT+TGG | + | chr4_3:52054865-52054884 | Msa0646320:three_prime_UTR | 20.0% |
| !!! | ACAATGAAAGCATTAAATTC+TGG | - | chr4_3:52052185-52052204 | None:intergenic | 25.0% |
| ! | ATAAGTTACATAGTAGTAGA+AGG | - | chr4_3:52052471-52052490 | None:intergenic | 25.0% |
| ! | GTAATGTTTCGTGAAATTAT+TGG | + | chr4_3:52052517-52052536 | Msa0646320:intron | 25.0% |
| !!! | TTTTTCAATTAAGACGATAG+AGG | + | chr4_3:52052602-52052621 | Msa0646320:intron | 25.0% |
| ! | TTTAATGATGATTTACTTGG+GGG | + | chr4_3:52053003-52053022 | Msa0646320:intron | 25.0% |
| !!! | GTTTTGGTAGATATAAGTAA+TGG | + | chr4_3:52053033-52053052 | Msa0646320:intron | 25.0% |
| !! | AATTTTCCTTTGTCCTTTAA+TGG | + | chr4_3:52053279-52053298 | Msa0646320:intron | 25.0% |
| ! | AAAATTCCATTAAAGGACAA+AGG | - | chr4_3:52053288-52053307 | None:intergenic | 25.0% |
| !! | TTTGTCCTTTAATGGAATTT+TGG | + | chr4_3:52053287-52053306 | Msa0646320:intron | 25.0% |
| ! | ATTGAGATAAATATGCCATT+TGG | - | chr4_3:52053496-52053515 | None:intergenic | 25.0% |
| !!! | TTTTGTGTATGTTCTAAAGA+AGG | + | chr4_3:52053690-52053709 | Msa0646320:CDS | 25.0% |
| ! | AAAAAAAAAAAGAGGCTGTA+TGG | - | chr4_3:52053724-52053743 | None:intergenic | 25.0% |
| ! | AGTTTATAATGTGATATCAG+GGG | - | chr4_3:52053841-52053860 | None:intergenic | 25.0% |
| ! | CAAGTTTATAATGTGATATC+AGG | - | chr4_3:52053843-52053862 | None:intergenic | 25.0% |
| ! | CTGATATCACATTATAAACT+TGG | + | chr4_3:52053841-52053860 | Msa0646320:intron | 25.0% |
| ! | TTCTTAGATTGACATCAAAT+CGG | - | chr4_3:52053910-52053929 | None:intergenic | 25.0% |
| !! | CAATCTAAGAACTAATTTGT+TGG | + | chr4_3:52053919-52053938 | Msa0646320:intron | 25.0% |
| !! | ATTTCTTTTCACAAAGTTAC+TGG | + | chr4_3:52053987-52054006 | Msa0646320:intron | 25.0% |
| ! | AAAGTTACTGGATTTATAAG+TGG | + | chr4_3:52053999-52054018 | Msa0646320:intron | 25.0% |
| ! | CTTTGCAATGATATAGAAAA+TGG | + | chr4_3:52054145-52054164 | Msa0646320:intron | 25.0% |
| ! | ATAATCAGATAGATTTCATC+AGG | + | chr4_3:52054186-52054205 | Msa0646320:intron | 25.0% |
| ! | AGAAAAAAACAATACTGTAC+TGG | - | chr4_3:52054219-52054238 | None:intergenic | 25.0% |
| !!! | GTTTAATTCTAGTTTTGGTT+AGG | + | chr4_3:52054360-52054379 | Msa0646320:intron | 25.0% |
| ! | TACAAAAGTGACACTTAAAA+AGG | - | chr4_3:52054660-52054679 | None:intergenic | 25.0% |
| ! | TTTGAAAGTGACAGTTAAAT+AGG | - | chr4_3:52054696-52054715 | None:intergenic | 25.0% |
| ! | TTACCCTTAGTTATTTATTG+TGG | + | chr4_3:52054750-52054769 | Msa0646320:three_prime_UTR | 25.0% |
| ! | TCTCCACAATAAATAACTAA+GGG | - | chr4_3:52054756-52054775 | None:intergenic | 25.0% |
| ! | AAACGACTATAATTTAGAGA+CGG | - | chr4_3:52054829-52054848 | None:intergenic | 25.0% |
| ! | CTCTAAATTATAGTCGTTTA+AGG | + | chr4_3:52054830-52054849 | Msa0646320:three_prime_UTR | 25.0% |
| ! | CCACTAACTACAATTAATAA+GGG | - | chr4_3:52054930-52054949 | None:intergenic | 25.0% |
| ! | TCCACTAACTACAATTAATA+AGG | - | chr4_3:52054931-52054950 | None:intergenic | 25.0% |
| AATACCAGTAAGAAGGATTA+AGG | - | chr4_3:52052116-52052135 | None:intergenic | 30.0% | |
| ATTAGTGAATACCAGTAAGA+AGG | - | chr4_3:52052123-52052142 | None:intergenic | 30.0% | |
| AGTTCAGAAAAATGACTAGA+AGG | - | chr4_3:52052159-52052178 | None:intergenic | 30.0% | |
| !!! | TTGTTTTGTTTCTCTCTTTC+AGG | + | chr4_3:52052201-52052220 | Msa0646320:intron | 30.0% |
| !!! | TGTTTTGTTTCTCTCTTTCA+GGG | + | chr4_3:52052202-52052221 | Msa0646320:intron | 30.0% |
| TTGAATGATGTGACGAAAAT+GGG | - | chr4_3:52052276-52052295 | None:intergenic | 30.0% | |
| CAAAATCGTTTACTTTCTCA+GGG | + | chr4_3:52052428-52052447 | Msa0646320:CDS | 30.0% | |
| TCTCATTATCTGATTCTGTT+TGG | + | chr4_3:52053108-52053127 | Msa0646320:intron | 30.0% | |
| !! | TTTGATTTGGTTATCGAGAA+AGG | + | chr4_3:52053238-52053257 | Msa0646320:CDS | 30.0% |
| GAAAGGAACTATGGTAAATT+AGG | + | chr4_3:52053255-52053274 | Msa0646320:intron | 30.0% | |
| TCAAGCCAAAATTCCATTAA+AGG | - | chr4_3:52053295-52053314 | None:intergenic | 30.0% | |
| AATCCGGTGCATTAAATATA+GGG | - | chr4_3:52053624-52053643 | None:intergenic | 30.0% | |
| AAATCCGGTGCATTAAATAT+AGG | - | chr4_3:52053625-52053644 | None:intergenic | 30.0% | |
| !!! | GTCTGCTTTTTGATATATTG+AGG | + | chr4_3:52053774-52053793 | Msa0646320:intron | 30.0% |
| ! | AAGATAGATGAACATTTTCC+AGG | + | chr4_3:52054468-52054487 | Msa0646320:intron | 30.0% |
| ! | AGATAGATGAACATTTTCCA+GGG | + | chr4_3:52054469-52054488 | Msa0646320:intron | 30.0% |
| CTCTCCACAATAAATAACTA+AGG | - | chr4_3:52054757-52054776 | None:intergenic | 30.0% | |
| CCCTTATTAATTGTAGTTAG+TGG | + | chr4_3:52054927-52054946 | Msa0646320:three_prime_UTR | 30.0% | |
| GTTGAATGATGTGACGAAAA+TGG | - | chr4_3:52052277-52052296 | None:intergenic | 35.0% | |
| AAGGTCAATGCAAGTAATGT+TGG | - | chr4_3:52052384-52052403 | None:intergenic | 35.0% | |
| TTTGAACAGCAACATGAGAA+AGG | - | chr4_3:52052403-52052422 | None:intergenic | 35.0% | |
| GCAAAATCGTTTACTTTCTC+AGG | + | chr4_3:52052427-52052446 | Msa0646320:CDS | 35.0% | |
| TTACTTTCTCAGGGATTCAA+AGG | + | chr4_3:52052437-52052456 | Msa0646320:CDS | 35.0% | |
| GAAAATGACAGTTACCAAAC+AGG | + | chr4_3:52052724-52052743 | Msa0646320:intron | 35.0% | |
| CATTACTCTACAAGTCAGTT+TGG | - | chr4_3:52052902-52052921 | None:intergenic | 35.0% | |
| !! | CAAACTGACTTGTAGAGTAA+TGG | + | chr4_3:52052900-52052919 | Msa0646320:intron | 35.0% |
| AGGACTTATAGTCTAATGTG+AGG | + | chr4_3:52052952-52052971 | Msa0646320:intron | 35.0% | |
| TCAAAACACTCATCGTCAAA+AGG | - | chr4_3:52053223-52053242 | None:intergenic | 35.0% | |
| !!! | TGACGATGAGTGTTTTGATT+TGG | + | chr4_3:52053225-52053244 | Msa0646320:CDS | 35.0% |
| TCTCAAGCTTAAGAACTGTA+GGG | - | chr4_3:52053341-52053360 | None:intergenic | 35.0% | |
| TTTGAAGGATGTATTGTTCG+TGG | + | chr4_3:52053387-52053406 | Msa0646320:intron | 35.0% | |
| ! | TATCTCAATAACTTTTGGCC+AGG | + | chr4_3:52053507-52053526 | Msa0646320:CDS | 35.0% |
| AAGAGTTCATTCTTCAAACC+TGG | - | chr4_3:52053528-52053547 | None:intergenic | 35.0% | |
| AGAACATTAGATTCAAGGCA+GGG | - | chr4_3:52053572-52053591 | None:intergenic | 35.0% | |
| AAGAACATTAGATTCAAGGC+AGG | - | chr4_3:52053573-52053592 | None:intergenic | 35.0% | |
| ! | AATGTGATATCAGGGGATTT+TGG | - | chr4_3:52053834-52053853 | None:intergenic | 35.0% |
| GGCAAAGATTTCTTCAATGA+AGG | + | chr4_3:52053940-52053959 | Msa0646320:intron | 35.0% | |
| GTTACTGGATTTATAAGTGG+AGG | + | chr4_3:52054002-52054021 | Msa0646320:intron | 35.0% | |
| ! | TTTCTTCCTTTTCTACCTTC+TGG | + | chr4_3:52054234-52054253 | Msa0646320:intron | 35.0% |
| AAACAACTTGAGCAAAACAC+AGG | - | chr4_3:52054344-52054363 | None:intergenic | 35.0% | |
| ACTTCAATCTTCTTAACAGG+TGG | - | chr4_3:52054520-52054539 | None:intergenic | 35.0% | |
| TCATGGAACAGATTAAGATG+TGG | - | chr4_3:52054544-52054563 | None:intergenic | 35.0% | |
| ACATCTTAATCTGTTCCATG+AGG | + | chr4_3:52054543-52054562 | Msa0646320:CDS | 35.0% | |
| GACACTTAAAAAGGAACAGA+GGG | - | chr4_3:52054651-52054670 | None:intergenic | 35.0% | |
| TGACACTTAAAAAGGAACAG+AGG | - | chr4_3:52054652-52054671 | None:intergenic | 35.0% | |
| GACTATAATTTAGAGACGGA+GGG | - | chr4_3:52054825-52054844 | None:intergenic | 35.0% | |
| ! | AGTCGTTTAAGGTTTGTACA+CGG | + | chr4_3:52054841-52054860 | Msa0646320:three_prime_UTR | 35.0% |
| AGGTTTGTACACGGTTATTA+AGG | + | chr4_3:52054850-52054869 | Msa0646320:three_prime_UTR | 35.0% | |
| ! | GCAATTATCACCGTTTTGTC+CGG | + | chr4_3:52052007-52052026 | Msa0646320:five_prime_UTR | 40.0% |
| CTAGGGTTGGAAATCAACAA+TGG | + | chr4_3:52052035-52052054 | Msa0646320:exon | 40.0% | |
| CGTACCTTAATCCTTCTTAC+TGG | + | chr4_3:52052109-52052128 | Msa0646320:CDS | 40.0% | |
| GGAAACTCACAAATGTGTGA+TGG | + | chr4_3:52052338-52052357 | Msa0646320:CDS | 40.0% | |
| ! | TGTGATGGCTTGTATAACGA+TGG | + | chr4_3:52052353-52052372 | Msa0646320:CDS | 40.0% |
| ACGACTAAAACAGACCTGTT+TGG | - | chr4_3:52052741-52052760 | None:intergenic | 40.0% | |
| !!! | ACAGGTCTGTTTTAGTCGTA+TGG | + | chr4_3:52052742-52052761 | Msa0646320:intron | 40.0% |
| AAGTTATCTTGCAGTCTGCT+TGG | - | chr4_3:52052798-52052817 | None:intergenic | 40.0% | |
| GATGATTTACTTGGGGGAAT+TGG | + | chr4_3:52053009-52053028 | Msa0646320:intron | 40.0% | |
| GGTTATCGAGAAAGGAACTA+TGG | + | chr4_3:52053246-52053265 | Msa0646320:CDS | 40.0% | |
| CTCTCAAGCTTAAGAACTGT+AGG | - | chr4_3:52053342-52053361 | None:intergenic | 40.0% | |
| GATGTATTGTTCGTGGATAG+TGG | + | chr4_3:52053394-52053413 | Msa0646320:CDS | 40.0% | |
| ATGACCTTGGACATAGTTTC+GGG | - | chr4_3:52053439-52053458 | None:intergenic | 40.0% | |
| CATGACCTTGGACATAGTTT+CGG | - | chr4_3:52053440-52053459 | None:intergenic | 40.0% | |
| TTTCAATGTGGACATGACCT+TGG | - | chr4_3:52053452-52053471 | None:intergenic | 40.0% | |
| AAGGTCATGTCCACATTGAA+AGG | + | chr4_3:52053451-52053470 | Msa0646320:CDS | 40.0% | |
| !! | CACATTGAAAGGTGTTCACA+GGG | + | chr4_3:52053462-52053481 | Msa0646320:CDS | 40.0% |
| !!! | CACAGGGTTTTGAAACCAAA+TGG | + | chr4_3:52053478-52053497 | Msa0646320:CDS | 40.0% |
| ! | TCTGTTGAGTGGACAACTTT+TGG | + | chr4_3:52053652-52053671 | Msa0646320:CDS | 40.0% |
| AAAGAGCCAGAAGGTAGAAA+AGG | - | chr4_3:52054243-52054262 | None:intergenic | 40.0% | |
| !!! | TTCTACCTTCTGGCTCTTTT+TGG | + | chr4_3:52054244-52054263 | Msa0646320:intron | 40.0% |
| GTAACACAACTCTCCATCAA+AGG | - | chr4_3:52054319-52054338 | None:intergenic | 40.0% | |
| !!! | TCTAGTTTTGGTTAGGGAAG+AGG | + | chr4_3:52054367-52054386 | Msa0646320:intron | 40.0% |
| !!! | CTAGTTTTGGTTAGGGAAGA+GGG | + | chr4_3:52054368-52054387 | Msa0646320:intron | 40.0% |
| !!! | TAGTTTTGGTTAGGGAAGAG+GGG | + | chr4_3:52054369-52054388 | Msa0646320:intron | 40.0% |
| GGCACTTCAATCTTCTTAAC+AGG | - | chr4_3:52054523-52054542 | None:intergenic | 40.0% | |
| CTTCACTTTCTAACTCCTCA+TGG | - | chr4_3:52054561-52054580 | None:intergenic | 40.0% | |
| CGACTATAATTTAGAGACGG+AGG | - | chr4_3:52054826-52054845 | None:intergenic | 40.0% | |
| ! | ATTATCACCGTTTTGTCCGG+CGG | + | chr4_3:52052010-52052029 | Msa0646320:five_prime_UTR | 45.0% |
| TTCTCTCTTTCAGGGATGAG+AGG | + | chr4_3:52052210-52052229 | Msa0646320:intron | 45.0% | |
| CGAAGGAAGAGAAATACGAG+TGG | + | chr4_3:52052237-52052256 | Msa0646320:CDS | 45.0% | |
| AGAGGAATTGGGTGTGAGAT+GGG | - | chr4_3:52052300-52052319 | None:intergenic | 45.0% | |
| AGCTCGAGTACAGAGGAATT+GGG | - | chr4_3:52052311-52052330 | None:intergenic | 45.0% | |
| AAGCTCGAGTACAGAGGAAT+TGG | - | chr4_3:52052312-52052331 | None:intergenic | 45.0% | |
| AATTCCTCTGTACTCGAGCT+TGG | + | chr4_3:52052311-52052330 | Msa0646320:CDS | 45.0% | |
| !! | GTAGCGAATGAGGCTTTGTT+TGG | - | chr4_3:52052880-52052899 | None:intergenic | 45.0% |
| !! | AGTCAGTTTGGTAGCGAATG+AGG | - | chr4_3:52052890-52052909 | None:intergenic | 45.0% |
| !! | ACTTGGGGGAATTGGTGTTT+TGG | + | chr4_3:52053017-52053036 | Msa0646320:intron | 45.0% |
| !! | TTTCGGGCTTTGGATTCCAT+GGG | - | chr4_3:52053423-52053442 | None:intergenic | 45.0% |
| TTGGACATAGTTTCGGGCTT+TGG | - | chr4_3:52053433-52053452 | None:intergenic | 45.0% | |
| AAAGCCCGAAACTATGTCCA+AGG | + | chr4_3:52053432-52053451 | Msa0646320:CDS | 45.0% | |
| CCTGTGAACACCTTTCAATG+TGG | - | chr4_3:52053464-52053483 | None:intergenic | 45.0% | |
| !! | CCACATTGAAAGGTGTTCAC+AGG | + | chr4_3:52053461-52053480 | Msa0646320:CDS | 45.0% |
| ATTCATGCCAGCCACATTTC+AGG | + | chr4_3:52053596-52053615 | Msa0646320:intron | 45.0% | |
| ! | AATATAGGGCGCCTGAAATG+TGG | - | chr4_3:52053610-52053629 | None:intergenic | 45.0% |
| GCGCCCTATATTTAATGCAC+CGG | + | chr4_3:52053618-52053637 | Msa0646320:CDS | 45.0% | |
| TTAATGCACCGGATTTCAGC+TGG | + | chr4_3:52053629-52053648 | Msa0646320:CDS | 45.0% | |
| TCAACAGACCAGCTGAAATC+CGG | - | chr4_3:52053640-52053659 | None:intergenic | 45.0% | |
| ! | ATTTCAGCTGGTCTGTTGAG+TGG | + | chr4_3:52053641-52053660 | Msa0646320:CDS | 45.0% |
| !! | TATTGAGGTGCTGCTACCAA+AGG | + | chr4_3:52053789-52053808 | Msa0646320:intron | 45.0% |
| AACACTTACGTTCGAGCCTT+TGG | - | chr4_3:52053808-52053827 | None:intergenic | 45.0% | |
| CGGTCACTGTAGTACAAAAC+TGG | - | chr4_3:52053890-52053909 | None:intergenic | 45.0% | |
| AAGCTCCAAAAAGAGCCAGA+AGG | - | chr4_3:52054252-52054271 | None:intergenic | 45.0% | |
| !!! | TTTTTGGAGCTTGCTACACC+TGG | + | chr4_3:52054260-52054279 | Msa0646320:intron | 45.0% |
| AGGGGGATTCATCCAATCTT+TGG | + | chr4_3:52054284-52054303 | Msa0646320:intron | 45.0% | |
| ACACAACTCTCCATCAAAGG+CGG | - | chr4_3:52054316-52054335 | None:intergenic | 45.0% | |
| CAACTTGAGCAAAACACAGG+TGG | - | chr4_3:52054341-52054360 | None:intergenic | 45.0% | |
| GGGTATGCACGAGATTGATA+AGG | + | chr4_3:52054389-52054408 | Msa0646320:intron | 45.0% | |
| ! | TGAACATTTTCCAGGGACAG+AGG | + | chr4_3:52054476-52054495 | Msa0646320:intron | 45.0% |
| !! | ATTAAAAAAAAAAAAAAAAG+AGG | - | chr4_3:52053732-52053751 | None:intergenic | 5.0% |
| TGTAGCACCCTCAACTGCAT+CGG | + | chr4_3:52052086-52052105 | Msa0646320:CDS | 50.0% | |
| GAGGAATTGGGTGTGAGATG+GGG | - | chr4_3:52052299-52052318 | None:intergenic | 50.0% | |
| CAGAGGAATTGGGTGTGAGA+TGG | - | chr4_3:52052301-52052320 | None:intergenic | 50.0% | |
| ACATCCAAGCTCGAGTACAG+AGG | - | chr4_3:52052318-52052337 | None:intergenic | 50.0% | |
| TCTGTACTCGAGCTTGGATG+TGG | + | chr4_3:52052317-52052336 | Msa0646320:CDS | 50.0% | |
| !! | GTTTCGGGCTTTGGATTCCA+TGG | - | chr4_3:52053424-52053443 | None:intergenic | 50.0% |
| ATTGGATGAATCCCCCTTCC+AGG | - | chr4_3:52054281-52054300 | None:intergenic | 50.0% | |
| CACAACTCTCCATCAAAGGC+GGG | - | chr4_3:52054315-52054334 | None:intergenic | 50.0% | |
| ATTTCCAACCCTAGCACCGC+CGG | - | chr4_3:52052029-52052048 | None:intergenic | 55.0% | |
| CGAAACACACCCGACGACAA+CGG | + | chr4_3:52052059-52052078 | Msa0646320:CDS | 55.0% | |
| CTACAGTTGCCGTTGTCGTC+GGG | - | chr4_3:52052071-52052090 | None:intergenic | 55.0% | |
| GCTACAGTTGCCGTTGTCGT+CGG | - | chr4_3:52052072-52052091 | None:intergenic | 55.0% | |
| AGGTACGCCGATGCAGTTGA+GGG | - | chr4_3:52052096-52052115 | None:intergenic | 55.0% | |
| AAGGTACGCCGATGCAGTTG+AGG | - | chr4_3:52052097-52052116 | None:intergenic | 55.0% | |
| CAGGGATGAGAGGTTCACGA+AGG | + | chr4_3:52052220-52052239 | Msa0646320:intron | 55.0% | |
| ! | TCGTGGATAGTGGTGACCCA+TGG | + | chr4_3:52053404-52053423 | Msa0646320:CDS | 55.0% |
| !! | TGGAGCTTGCTACACCTGGA+AGG | + | chr4_3:52054264-52054283 | Msa0646320:intron | 55.0% |
| !! | GGAGCTTGCTACACCTGGAA+GGG | + | chr4_3:52054265-52054284 | Msa0646320:intron | 55.0% |
| !! | GAGCTTGCTACACCTGGAAG+GGG | + | chr4_3:52054266-52054285 | Msa0646320:intron | 55.0% |
| !! | AGCTTGCTACACCTGGAAGG+GGG | + | chr4_3:52054267-52054286 | Msa0646320:intron | 55.0% |
| AGGCGGGTAGAGCCAAAGAT+TGG | - | chr4_3:52054299-52054318 | None:intergenic | 55.0% | |
| !! | TTGGCTCTACCCGCCTTTGA+TGG | + | chr4_3:52054303-52054322 | Msa0646320:intron | 55.0% |
| CATGTGATGACCTCTGTCCC+TGG | - | chr4_3:52054489-52054508 | None:intergenic | 55.0% | |
| TGTCCAACTGAGTGCAGGCG+TGG | + | chr4_3:52051985-52052004 | Msa0646320:five_prime_UTR | 60.0% | |
| TTGCCACGCCTGCACTCAGT+TGG | - | chr4_3:52051991-52052010 | None:intergenic | 60.0% | |
| CCTAGCACCGCCGGACAAAA+CGG | - | chr4_3:52052020-52052039 | None:intergenic | 60.0% | |
| !! | CGTTTTGTCCGGCGGTGCTA+GGG | + | chr4_3:52052018-52052037 | Msa0646320:five_prime_UTR | 60.0% |
| ! | TAGGGCGCCTGAAATGTGGC+TGG | - | chr4_3:52053606-52053625 | None:intergenic | 60.0% |
| ! | CCGTTTTGTCCGGCGGTGCT+AGG | + | chr4_3:52052017-52052036 | Msa0646320:five_prime_UTR | 65.0% |
| ! | TTGTCCGGCGGTGCTAGGGT+TGG | + | chr4_3:52052022-52052041 | Msa0646320:five_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 52051981 | 52054993 | 52051981 | ID=Msa0646320;Name=Msa0646320 |
| chr4_3 | mRNA | 52051981 | 52054993 | 52051981 | ID=Msa0646320-mRNA-1;Parent=Msa0646320;Name=Msa0646320-mRNA-1;_AED=0.10;_eAED=0.10;_QI=73|1|1|1|1|1|6|372|255 |
| chr4_3 | exon | 52051981 | 52052130 | 52051981 | ID=Msa0646320-mRNA-1:exon:12665;Parent=Msa0646320-mRNA-1 |
| chr4_3 | exon | 52052223 | 52052458 | 52052223 | ID=Msa0646320-mRNA-1:exon:12666;Parent=Msa0646320-mRNA-1 |
| chr4_3 | exon | 52053185 | 52053267 | 52053185 | ID=Msa0646320-mRNA-1:exon:12667;Parent=Msa0646320-mRNA-1 |
| chr4_3 | exon | 52053394 | 52053528 | 52053394 | ID=Msa0646320-mRNA-1:exon:12668;Parent=Msa0646320-mRNA-1 |
| chr4_3 | exon | 52053607 | 52053711 | 52053607 | ID=Msa0646320-mRNA-1:exon:12669;Parent=Msa0646320-mRNA-1 |
| chr4_3 | exon | 52054490 | 52054993 | 52054490 | ID=Msa0646320-mRNA-1:exon:12670;Parent=Msa0646320-mRNA-1 |
| chr4_3 | five_prime_UTR | 52051981 | 52052053 | 52051981 | ID=Msa0646320-mRNA-1:five_prime_utr;Parent=Msa0646320-mRNA-1 |
| chr4_3 | CDS | 52052054 | 52052130 | 52052054 | ID=Msa0646320-mRNA-1:cds;Parent=Msa0646320-mRNA-1 |
| chr4_3 | CDS | 52052223 | 52052458 | 52052223 | ID=Msa0646320-mRNA-1:cds;Parent=Msa0646320-mRNA-1 |
| chr4_3 | CDS | 52053185 | 52053267 | 52053185 | ID=Msa0646320-mRNA-1:cds;Parent=Msa0646320-mRNA-1 |
| chr4_3 | CDS | 52053394 | 52053528 | 52053394 | ID=Msa0646320-mRNA-1:cds;Parent=Msa0646320-mRNA-1 |
| chr4_3 | CDS | 52053607 | 52053711 | 52053607 | ID=Msa0646320-mRNA-1:cds;Parent=Msa0646320-mRNA-1 |
| chr4_3 | CDS | 52054490 | 52054621 | 52054490 | ID=Msa0646320-mRNA-1:cds;Parent=Msa0646320-mRNA-1 |
| chr4_3 | three_prime_UTR | 52054622 | 52054993 | 52054622 | ID=Msa0646320-mRNA-1:three_prime_utr;Parent=Msa0646320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
