AlfalfaGEDB | Msa0688120

M. sativa cultivar zhongmu-4 / Msa0688120

KEGG: K10277
GO: GO:0000086 GO:0000278 GO:0003674 GO:0003682 GO:0003700 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006482 GO:0006807 GO:0006996 GO:0007049 GO:0007623 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008214 GO:0008276 GO:0008757 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010452 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016278 GO:0016279 GO:0016491 GO:0016569 GO:0016570 GO:0016571 GO:0016577 GO:0016705 GO:0016706 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0022402 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032259 GO:0032451 GO:0032452 GO:0034968 GO:0036211 GO:0042054 GO:0042752 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0045893 GO:0045935 GO:0046975 GO:0048511 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051213 GO:0051252 GO:0051254 GO:0051276 GO:0051864 GO:0055114 GO:0060255 GO:0065007 GO:0070013 GO:0070076 GO:0070544 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:0140110 GO:1901564 GO:1902680 GO:1903047 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF13621.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0688120	XP_013456231.1	95.012	421	13	1	1	421	1	413	0.0	823

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0688120	sp\|Q8RWR1\|JMJ30_ARATH	69.834	421	105	5	12	419	17	428	0.0	592

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0688120	A0A072UKM1	95.012	421	13	1	1	421	1	413	0.0	823

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TFs/TRs:

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Gene ID	Type	Classification
Msa0688120	TR	Jumonji

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0604010	Msa0688120	0.868104	8.363492e-66	-8.615850e-47
Msa0688120	Msa0982130	0.845977	2.899277e-59	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0688120	MtrunA17_Chr4g0033081	95.012	421	13	1	1	421	1	413	0.0	823
Msa0688120	MtrunA17_Chr1g0185111	38.065	155	86	6	263	412	138	287	3.33e-21	95.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0688120	AT3G20810.1	71.707	410	105	4	12	419	17	417	0.0	601
Msa0688120	AT3G20810.2	69.834	421	105	5	12	419	17	428	0.0	592
Msa0688120	AT3G20810.3	69.212	406	110	4	1	400	1	397	0.0	573
Msa0688120	AT3G20810.5	66.667	339	98	4	1	333	1	330	5.15e-157	447
Msa0688120	AT3G20810.4	67.066	334	95	4	1	328	1	325	1.64e-155	444
Msa0688120	AT5G19840.1	28.986	276	148	11	176	412	15	281	9.39e-21	94.7
Msa0688120	AT5G19840.2	28.986	276	148	11	176	412	15	281	9.57e-21	95.1
Msa0688120	AT3G45880.2	26.552	290	165	10	166	412	16	300	5.38e-13	70.1
Msa0688120	AT3G45880.1	26.552	290	165	10	166	412	16	300	6.55e-13	70.1
Msa0688120	AT5G06550.1	24.715	263	161	12	159	409	182	419	8.82e-11	63.9

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Find 124 sgRNAs with CRISPR-Local

Find 380 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTATTTATGTGCAGAT+TGG	0.423646	4_4:-53374072	Msa0688120:CDS
AAAGCATGGTTTCTGAGTAG+GGG	0.643076	4_4:+53373119	None:intergenic
AAAGTAATACGACATTAAGA+CGG	0.647553	4_4:+53372396	None:intergenic
AAATTCCATGTCTTGCACCT+TGG	0.493789	4_4:+53372542	None:intergenic
AAGCAGTTCGTGAGATGGCG+TGG	0.524892	4_4:-53377524	Msa0688120:CDS
AATGCTTGGTTTGGTCCAGC+TGG	0.430502	4_4:-53373763	Msa0688120:CDS
AATGGGAGGTGTAAAGATTT+TGG	0.296847	4_4:-53377276	Msa0688120:CDS
AATGGTGTTACTGTTCCAGC+TGG	0.562473	4_4:+53373748	None:intergenic
AATGTCGCCGGCGGCGGCGA+GGG	0.462687	4_4:+53377557	None:intergenic
AATTCCATGTCTTGCACCTT+GGG	0.389131	4_4:+53372543	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGAAAATGGAGAGTTTAAAG+AGG	-	chr4_4:53372630-53372649	Msa0688120:intron	30.0%
TTTGGATATGGGGATTATTA+TGG	-	chr4_4:53372663-53372682	Msa0688120:intron	30.0%
TTGGATATGGGGATTATTAT+GGG	-	chr4_4:53372664-53372683	Msa0688120:intron	30.0%
AATTTGATGTTTCAAAGGTG+AGG	-	chr4_4:53372815-53372834	Msa0688120:intron	30.0%
ATTGAATTCAAAGGGAAAAG+AGG	+	chr4_4:53372846-53372865	None:intergenic	30.0%
CAACACATGATTGAATTCAA+AGG	+	chr4_4:53372855-53372874	None:intergenic	30.0%
GACAACTGTACTTTAGTATT+CGG	+	chr4_4:53372896-53372915	None:intergenic	30.0%
GAATACTAAAGTACAGTTGT+CGG	-	chr4_4:53372895-53372914	Msa0688120:intron	30.0%
TGTTACAAAACATGCATACA+TGG	-	chr4_4:53373199-53373218	Msa0688120:intron	30.0%
ATACCACATCACAACAATAA+TGG	+	chr4_4:53373610-53373629	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	53372361	53377700	53372361	ID=Msa0688120;Name=Msa0688120
chr4_4	mRNA	53372361	53377700	53372361	ID=Msa0688120-mRNA-1;Parent=Msa0688120;Name=Msa0688120-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0\|0.4\|0.33\|1\|1\|1\|6\|49\|421
chr4_4	exon	53372361	53372598	53372361	ID=Msa0688120-mRNA-1:exon:14147;Parent=Msa0688120-mRNA-1
chr4_4	exon	53373105	53373197	53373105	ID=Msa0688120-mRNA-1:exon:14146;Parent=Msa0688120-mRNA-1
chr4_4	exon	53373714	53373881	53373714	ID=Msa0688120-mRNA-1:exon:14145;Parent=Msa0688120-mRNA-1
chr4_4	exon	53373967	53374101	53373967	ID=Msa0688120-mRNA-1:exon:14144;Parent=Msa0688120-mRNA-1
chr4_4	exon	53375185	53375394	53375185	ID=Msa0688120-mRNA-1:exon:14143;Parent=Msa0688120-mRNA-1
chr4_4	exon	53377230	53377700	53377230	ID=Msa0688120-mRNA-1:exon:14142;Parent=Msa0688120-mRNA-1
chr4_4	CDS	53377230	53377700	53377230	ID=Msa0688120-mRNA-1:cds;Parent=Msa0688120-mRNA-1
chr4_4	CDS	53375185	53375394	53375185	ID=Msa0688120-mRNA-1:cds;Parent=Msa0688120-mRNA-1
chr4_4	CDS	53373967	53374101	53373967	ID=Msa0688120-mRNA-1:cds;Parent=Msa0688120-mRNA-1
chr4_4	CDS	53373714	53373881	53373714	ID=Msa0688120-mRNA-1:cds;Parent=Msa0688120-mRNA-1
chr4_4	CDS	53373105	53373197	53373105	ID=Msa0688120-mRNA-1:cds;Parent=Msa0688120-mRNA-1
chr4_4	CDS	53372410	53372598	53372410	ID=Msa0688120-mRNA-1:cds;Parent=Msa0688120-mRNA-1
chr4_4	three_prime_UTR	53372361	53372409	53372361	ID=Msa0688120-mRNA-1:three_prime_utr;Parent=Msa0688120-mRNA-1

Gene Sequence

>Msa0688120

ATGTCAAAAACCACCTCATCCATCAGCAACTCTCTCGAAACACCAACGCTCGACGCAGAATCTCCCACACTCCTCCACTCCATCTCATCCCACGGAGGCTACGCCTACGTCCGTATGTCCTCCCTCGCCGCCGCCGGCGACATTCGCGCCGCAGAAGCAGTTCGTGAGATGGCGTGGGAGCAGCTGCACTCCGGTCCATGGCACTCGGTGTTGCCGGTGTGGCGTGACGCGTACTCGATGGCGTGTTTGCAAGTTGCGAAGTGTTGCTATGAAAATGGAGAGTTTAAAGAGGCGCTTAGGGCTTTGGATATGGGGATTATTATGGGTGGGAGTTTGCTTAGGAAGGATTTGGATTCTGCTGTTGCAAAGGTTTCGGAGAAAGCGAGGTTGGTTAAGGTTGATAATGGGAGGTGTAAAGATTTTGGTGGCTCTGAGCATTTACTTGTTGATCTTGAATTTGATGTTTCAAAGGTGCTCCAACTTTTGCCTGTTAAGTCCCTTGCTTCAAAGCTTGTAGTGAAGAGATCCGCCTTGTCACTTGAGGAGTTCCTGAAAGATCATTACCTGGCTGGCTCTCCAGTTATCATCAGCGACTGCATGGCGCACTGGCCAGCCAAGAAAAACTGGAATAATATAGATTACTTGCAAAGAGTTGCTGGTGACCGCACTGTTCCGGTTGAGGTTGGGAAAAACTATTTATGTGCAGATTGGAAGCAAGAGCTAGTTACATTTTCAGAGTTCCTTGATCGGATAAGATCTAATAGCTGTTCTCCTGGTGGTCCTACATATCTTGCTCAGCATCCCTTGTTTGATCAGTTTCTGACACTCTTGAATTGGCAGATAAATGAGCTTCGGAGAGATATCTTTATTCCTGACTATTGTTTTACTGGTGGAGGGGAGCTAAGATCTCTCAATGCTTGGTTTGGTCCAGCTGGAACAGTAACACCATTACACCATGATCCGCATCATAACATACTAGCACAGGTTGTTGGGAAAAAATATGTTAGGCTTTATCCAGCATCTTTGTCTGAGGAACTTTTCCCCTACTCAGAAACCATGCTTTGCAATTCCAGCCAGGTTGATTTAGATGACGTAGATGAATTGAAGTTTCCCAAGGTGCAAGACATGGAATTTGTAGACTGCATTTTAGAGGAAGGTGAAATGTTATATATCCCGCCAAAGTGGTGGCACTATGTGCGGTCTTTAACTACCAGTTTATCAGTTAGCTTTTGGTGGAGTGAGGGTGAAAGTTCATCTCCGTCTTAA

Protein sequence

>Msa0688120

MSKTTSSISNSLETPTLDAESPTLLHSISSHGGYAYVRMSSLAAAGDIRAAEAVREMAWEQLHSGPWHSVLPVWRDAYSMACLQVAKCCYENGEFKEALRALDMGIIMGGSLLRKDLDSAVAKVSEKARLVKVDNGRCKDFGGSEHLLVDLEFDVSKVLQLLPVKSLASKLVVKRSALSLEEFLKDHYLAGSPVIISDCMAHWPAKKNWNNIDYLQRVAGDRTVPVEVGKNYLCADWKQELVTFSEFLDRIRSNSCSPGGPTYLAQHPLFDQFLTLLNWQINELRRDIFIPDYCFTGGGELRSLNAWFGPAGTVTPLHHDPHHNILAQVVGKKYVRLYPASLSEELFPYSETMLCNSSQVDLDDVDELKFPKVQDMEFVDCILEEGEMLYIPPKWWHYVRSLTTSLSVSFWWSEGESSSPS*