Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0688470 | XP_004503694.1 | 77.500 | 80 | 8 | 2 | 68 | 137 | 1 | 80 | 1.71e-34 | 128 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0688470 | sp|P42749|UBC5_ARATH | 71.250 | 80 | 13 | 2 | 68 | 137 | 1 | 80 | 9.36e-34 | 119 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0688470 | A0A1S2YEN7 | 77.500 | 80 | 8 | 2 | 68 | 137 | 1 | 80 | 8.17e-35 | 128 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0688470 | Msa1171880 | 0.813673 | 2.271869e-51 | -8.615850e-47 |
| Msa0688470 | Msa1306440 | 0.913390 | 6.507759e-84 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0688470 | MtrunA17_Chr8g0387131 | 75.000 | 80 | 10 | 2 | 68 | 137 | 1 | 80 | 2.32e-36 | 123 |
| Msa0688470 | MtrunA17_Chr8g0348701 | 70.000 | 80 | 14 | 2 | 68 | 137 | 1 | 80 | 3.75e-35 | 120 |
| Msa0688470 | MtrunA17_Chr6g0479281 | 76.316 | 76 | 9 | 2 | 68 | 138 | 1 | 72 | 3.00e-33 | 112 |
| Msa0688470 | MtrunA17_Chr8g0387151 | 78.788 | 66 | 9 | 1 | 77 | 137 | 6 | 71 | 1.23e-32 | 110 |
| Msa0688470 | MtrunA17_Chr4g0059291 | 67.500 | 80 | 16 | 2 | 68 | 137 | 1 | 80 | 2.02e-32 | 113 |
| Msa0688470 | MtrunA17_Chr8g0387171 | 66.667 | 75 | 15 | 2 | 68 | 137 | 1 | 70 | 1.09e-27 | 98.2 |
| Msa0688470 | MtrunA17_Chr1g0186291 | 61.765 | 68 | 18 | 1 | 78 | 137 | 1 | 68 | 1.81e-25 | 94.4 |
| Msa0688470 | MtrunA17_Chr1g0186191 | 68.889 | 45 | 9 | 2 | 78 | 117 | 1 | 45 | 5.95e-14 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0688470 | AT1G63800.1 | 71.250 | 80 | 13 | 2 | 68 | 137 | 1 | 80 | 9.51e-35 | 119 |
| Msa0688470 | AT5G41340.1 | 67.500 | 80 | 16 | 2 | 68 | 137 | 1 | 80 | 8.64e-33 | 114 |
| Msa0688470 | AT1G63800.2 | 73.846 | 65 | 12 | 1 | 78 | 137 | 1 | 65 | 3.54e-30 | 107 |
| Msa0688470 | AT2G46030.5 | 60.759 | 79 | 21 | 2 | 68 | 136 | 1 | 79 | 5.42e-28 | 102 |
| Msa0688470 | AT2G46030.1 | 60.759 | 79 | 21 | 2 | 68 | 136 | 1 | 79 | 5.42e-28 | 102 |
| Msa0688470 | AT2G46030.3 | 58.333 | 84 | 25 | 2 | 63 | 136 | 68 | 151 | 8.43e-28 | 103 |
| Msa0688470 | AT2G46030.4 | 62.500 | 64 | 19 | 1 | 78 | 136 | 19 | 82 | 2.00e-23 | 90.5 |
| Msa0688470 | AT2G46030.2 | 62.500 | 64 | 19 | 1 | 78 | 136 | 19 | 82 | 2.00e-23 | 90.5 |
| Msa0688470 | AT5G41340.2 | 75.000 | 36 | 9 | 0 | 102 | 137 | 10 | 45 | 4.30e-15 | 68.2 |
Find 204 sgRNAs with CRISPR-Local
Find 522 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCCTTGTGTTTCATATTT+TGG | 0.071581 | 4_4:-54448686 | Msa0688470:CDS |
| TGACTCTTCCAAATTATTTA+AGG | 0.101946 | 4_4:-54441682 | Msa0688470:three_prime_UTR |
| TACCATCACCGTTAAAATTT+TGG | 0.110531 | 4_4:+54444742 | None:intergenic |
| TGAAAATTATTGAGAATTTA+TGG | 0.124128 | 4_4:+54445758 | None:intergenic |
| CACCCTCACATTTGTTGTTT+TGG | 0.143855 | 4_4:+54444766 | None:intergenic |
| TGGTGCAAGCCTTATATTTA+AGG | 0.166386 | 4_4:+54441784 | None:intergenic |
| TTCATTCTCGCAAACGTAAA+AGG | 0.167837 | 4_4:-54444656 | Msa0688470:three_prime_UTR |
| CCATTGGGGATTTGATAAAA+TGG | 0.180493 | 4_4:-54442368 | Msa0688470:three_prime_UTR |
| GATCATTTGGTGATGGTTTC+GGG | 0.181909 | 4_4:-54442105 | Msa0688470:three_prime_UTR |
| TGTCTTCCTTTGAAAGTATA+TGG | 0.190078 | 4_4:+54442240 | None:intergenic |
| TGTACATTACGCCATGTTAT+TGG | 0.207667 | 4_4:+54441712 | None:intergenic |
| TTCTCCCTTGTGAAGGAAAA+AGG | 0.214256 | 4_4:-54445131 | Msa0688470:three_prime_UTR |
| ACATATATCTGTTGTTAAAA+TGG | 0.222083 | 4_4:-54441944 | Msa0688470:three_prime_UTR |
| TTTATCGGACCGGACTAAAA+TGG | 0.225462 | 4_4:-54446075 | Msa0688470:three_prime_UTR |
| CAAGAGTGATGGTAATTTAT+TGG | 0.225995 | 4_4:-54444799 | Msa0688470:three_prime_UTR |
| CCTTTATAATGCTAAATACT+AGG | 0.237593 | 4_4:+54446030 | None:intergenic |
| GGATCATTTGGTGATGGTTT+CGG | 0.238389 | 4_4:-54442106 | Msa0688470:three_prime_UTR |
| AATGTCAGCCTTAAATAATT+TGG | 0.246602 | 4_4:+54441674 | None:intergenic |
| CCTTCACCAGTATATGTTAA+TGG | 0.251035 | 4_4:-54445533 | Msa0688470:three_prime_UTR |
| CTACATGTTCTTCCTCAAAA+TGG | 0.257376 | 4_4:+54441989 | None:intergenic |
| TGATGAAGAAAAGAGATTTA+AGG | 0.278264 | 4_4:-54442317 | Msa0688470:three_prime_UTR |
| ACAAGATCTGTTTCAGTTGT+AGG | 0.281094 | 4_4:+54442508 | None:intergenic |
| CTAATCGATTCGGGCTTTAT+CGG | 0.283608 | 4_4:-54446090 | Msa0688470:exon |
| GGGTTTGGACCTTAATGTTT+TGG | 0.293428 | 4_4:-54445054 | Msa0688470:three_prime_UTR |
| CATAATTAAGCACATTGATT+TGG | 0.300440 | 4_4:-54444829 | Msa0688470:three_prime_UTR |
| GACCAAACTGAAGTTTGAAT+TGG | 0.302122 | 4_4:-54442404 | Msa0688470:three_prime_UTR |
| TTCTCTCGCTTCTCTTTCGT+TGG | 0.303564 | 4_4:+54448590 | None:intergenic |
| GGACTCTGTGATAGTTGATC+TGG | 0.306502 | 4_4:-54445075 | Msa0688470:three_prime_UTR |
| TAAATACTAGGGTTGTTAAT+TGG | 0.318097 | 4_4:+54446042 | None:intergenic |
| AAAGTGAAAACTTTCTCATT+TGG | 0.319253 | 4_4:-54448753 | Msa0688470:CDS |
| GAATTTATGGTGGTACTAAC+TGG | 0.324037 | 4_4:+54445771 | None:intergenic |
| TGAAAGAAACACAAAATAAT+AGG | 0.331249 | 4_4:+54441817 | None:intergenic |
| CCTAGTATTTAGCATTATAA+AGG | 0.331565 | 4_4:-54446030 | Msa0688470:three_prime_UTR |
| GCCTCCATCTATGGATTTCA+TGG | 0.339718 | 4_4:-54442068 | Msa0688470:three_prime_UTR |
| AGCTATCAAGCCTCCATCTA+TGG | 0.341794 | 4_4:-54442077 | Msa0688470:three_prime_UTR |
| GTTAGAAATTTACTATGTTT+AGG | 0.342465 | 4_4:+54448313 | None:intergenic |
| GATTTGAGAATGAGAGGCTT+TGG | 0.343884 | 4_4:+54444895 | None:intergenic |
| TACAAGCTGGCTCCGCCCCT+GGG | 0.344350 | 4_4:+54441882 | None:intergenic |
| CAGATTTGATTAAGCCATCT+TGG | 0.345613 | 4_4:-54442669 | Msa0688470:three_prime_UTR |
| TACATGTCTCGGCGTTTGCT+TGG | 0.353722 | 4_4:+54448559 | None:intergenic |
| ACATGTCTCGGCGTTTGCTT+GGG | 0.359959 | 4_4:+54448560 | None:intergenic |
| TCACTGAAGCCAAAACATTA+AGG | 0.361658 | 4_4:+54445045 | None:intergenic |
| ATACAAGCTGGCTCCGCCCC+TGG | 0.364838 | 4_4:+54441881 | None:intergenic |
| TACAACTCATTGCAGGTGTA+TGG | 0.365129 | 4_4:-54447841 | Msa0688470:intron |
| CATTATCGGAAATGATAAAC+TGG | 0.368928 | 4_4:-54444629 | Msa0688470:three_prime_UTR |
| CAAGAGGAGAATTGTATTAG+AGG | 0.371040 | 4_4:-54445215 | Msa0688470:three_prime_UTR |
| GACTATGAGGAAGTTGAGTT+TGG | 0.371247 | 4_4:-54442127 | Msa0688470:three_prime_UTR |
| ACTCACATTTCATCAACATT+AGG | 0.371368 | 4_4:+54447743 | None:intergenic |
| AATGGTTAGGCACACAAGTA+TGG | 0.372435 | 4_4:-54442552 | Msa0688470:three_prime_UTR |
| TGACTTGACCTAATCGATTC+GGG | 0.372470 | 4_4:-54446099 | Msa0688470:exon |
| GTTCAATGTGTGCAACTTAA+CGG | 0.374703 | 4_4:+54441743 | None:intergenic |
| TTTATTGCGTGCTCCTTCCT+TGG | 0.375724 | 4_4:-54441918 | Msa0688470:three_prime_UTR |
| GACATACCATTAACATATAC+TGG | 0.380697 | 4_4:+54445527 | None:intergenic |
| TACTTGTGTGCCTAACCATT+TGG | 0.380699 | 4_4:+54442555 | None:intergenic |
| CTCTAATACAATTCTCCTCT+TGG | 0.380788 | 4_4:+54445216 | None:intergenic |
| CCCATCGAAGGAGACTTATA+AGG | 0.386734 | 4_4:+54447788 | None:intergenic |
| TTTACTAAATTTCATGCAAA+TGG | 0.388491 | 4_4:-54445315 | Msa0688470:three_prime_UTR |
| CGATAAAGCCCGAATCGATT+AGG | 0.389195 | 4_4:+54446091 | None:intergenic |
| GAAGTTGAGTTTGGATCATT+TGG | 0.390652 | 4_4:-54442118 | Msa0688470:three_prime_UTR |
| TTGGAGGCGCTGCCAACCCC+AGG | 0.394610 | 4_4:-54441899 | Msa0688470:three_prime_UTR |
| TTTGATGATGACCCATTGTT+TGG | 0.394625 | 4_4:+54444492 | None:intergenic |
| TTGACTTGACCTAATCGATT+CGG | 0.400483 | 4_4:-54446100 | Msa0688470:exon |
| GGCGGAGCCAGCTTGTATCC+AGG | 0.400777 | 4_4:-54441876 | Msa0688470:three_prime_UTR |
| TCTGCAGAAACGACGGCATC+TGG | 0.402636 | 4_4:+54442688 | None:intergenic |
| ACCCAATTCAAACTTCAGTT+TGG | 0.406126 | 4_4:+54442402 | None:intergenic |
| TGTGATAGTTGATCTGGGTT+TGG | 0.407331 | 4_4:-54445069 | Msa0688470:three_prime_UTR |
| AAATAATAGGTGTAAATCAA+TGG | 0.407841 | 4_4:+54441830 | None:intergenic |
| TTATACTCCTCAGGATCAAA+TGG | 0.411508 | 4_4:+54444585 | None:intergenic |
| CATTGGGGATTTGATAAAAT+GGG | 0.415280 | 4_4:-54442367 | Msa0688470:three_prime_UTR |
| CCTTCACAAGGGAGAAAAGT+TGG | 0.420577 | 4_4:+54445138 | None:intergenic |
| AAAGAAGGGGAATGAAATAA+AGG | 0.421487 | 4_4:-54445948 | Msa0688470:intron |
| AAACTACACCAGTCCATTGC+GGG | 0.425596 | 4_4:+54442590 | None:intergenic |
| ACGTAAAAGGGAATCATTAT+CGG | 0.428409 | 4_4:-54444643 | Msa0688470:three_prime_UTR |
| GGTGCAAGCCTTATATTTAA+GGG | 0.429749 | 4_4:+54441785 | None:intergenic |
| TGAGGATCAGCACTATCAAC+AGG | 0.430312 | 4_4:+54445273 | None:intergenic |
| TCCTTATAAGTCTCCTTCGA+TGG | 0.435071 | 4_4:-54447789 | Msa0688470:CDS |
| GCTGGCTCCGCCCCTGGGGT+TGG | 0.435495 | 4_4:+54441887 | None:intergenic |
| TCATTGCAGTGTGAAGAGAT+AGG | 0.436154 | 4_4:+54445703 | None:intergenic |
| TTCCTTTGAAAGTATATGGA+TGG | 0.441539 | 4_4:+54442244 | None:intergenic |
| CACTCCATGAAATCCATAGA+TGG | 0.442549 | 4_4:+54442064 | None:intergenic |
| TTTGATCCTGAGGAGTATAA+AGG | 0.444102 | 4_4:-54444582 | Msa0688470:three_prime_UTR |
| ACCAAACTGAAGTTTGAATT+GGG | 0.446444 | 4_4:-54442403 | Msa0688470:three_prime_UTR |
| AGATTTGATTAAGCCATCTT+GGG | 0.447011 | 4_4:-54442668 | Msa0688470:three_prime_UTR |
| GACTTCATATTGCTGCAAAC+AGG | 0.450773 | 4_4:-54442426 | Msa0688470:three_prime_UTR |
| ACACCGAGCATCACCGGCTC+AGG | 0.456593 | 4_4:+54445182 | None:intergenic |
| CAGCCTCCTTTATACTCCTC+AGG | 0.457410 | 4_4:+54444576 | None:intergenic |
| TTATCGGACCGGACTAAAAT+GGG | 0.458596 | 4_4:-54446074 | Msa0688470:three_prime_UTR |
| TCTCTCGCTTCTCTTTCGTT+GGG | 0.460316 | 4_4:+54448591 | None:intergenic |
| AGTCACAAGTTCATGGCAAA+CGG | 0.460752 | 4_4:-54445369 | Msa0688470:three_prime_UTR |
| CAACTGAAACAGATCTTGTT+GGG | 0.465328 | 4_4:-54442504 | Msa0688470:three_prime_UTR |
| CCTCTCATTCTCAAATCTAA+AGG | 0.469105 | 4_4:-54444889 | Msa0688470:three_prime_UTR |
| CTTTATAATGCTAAATACTA+GGG | 0.469959 | 4_4:+54446031 | None:intergenic |
| GGGTTGTTAATTGGTGGGCC+AGG | 0.470782 | 4_4:+54446051 | None:intergenic |
| ACAACTGAAACAGATCTTGT+TGG | 0.471432 | 4_4:-54442505 | Msa0688470:three_prime_UTR |
| ATTGCGTGCTCCTTCCTTGG+AGG | 0.472945 | 4_4:-54441915 | Msa0688470:three_prime_UTR |
| AATAATAGGTGTAAATCAAT+GGG | 0.473255 | 4_4:+54441831 | None:intergenic |
| GGTGTAAATCAATGGGTTGA+GGG | 0.476630 | 4_4:+54441838 | None:intergenic |
| TCATTCTCGCAAACGTAAAA+GGG | 0.477895 | 4_4:-54444655 | Msa0688470:three_prime_UTR |
| AGTAGTGAGTCACAAGTTCA+TGG | 0.478834 | 4_4:-54445376 | Msa0688470:three_prime_UTR |
| CTGAGGAGTATAAAGGAGGC+TGG | 0.479138 | 4_4:-54444575 | Msa0688470:three_prime_UTR |
| CGTGAAAAGCTTGTTTCTGT+AGG | 0.481232 | 4_4:-54442634 | Msa0688470:three_prime_UTR |
| GCGGAAGTCCCGCAATGGAC+TGG | 0.484951 | 4_4:-54442598 | Msa0688470:three_prime_UTR |
| CAGTATCGAGAAAAGGGTTG+TGG | 0.485102 | 4_4:-54445097 | Msa0688470:three_prime_UTR |
| TGGGGTTGGCAGCGCCTCCA+AGG | 0.488786 | 4_4:+54441901 | None:intergenic |
| TCCATTGCGGGACTTCCGCT+TGG | 0.488954 | 4_4:+54442602 | None:intergenic |
| CCTTATAAGTCTCCTTCGAT+GGG | 0.489289 | 4_4:-54447788 | Msa0688470:CDS |
| TAGTTGCCAGCTAGAGGTCT+TGG | 0.491651 | 4_4:-54445634 | Msa0688470:three_prime_UTR |
| GACTCTGTGATAGTTGATCT+GGG | 0.491869 | 4_4:-54445074 | Msa0688470:three_prime_UTR |
| AGGCCTGAGCCGGTGATGCT+CGG | 0.501839 | 4_4:-54445185 | Msa0688470:three_prime_UTR |
| GTCACAAGTTCATGGCAAAC+GGG | 0.502162 | 4_4:-54445368 | Msa0688470:three_prime_UTR |
| TATGCTGCAGTATCGAGAAA+AGG | 0.502280 | 4_4:-54445104 | Msa0688470:three_prime_UTR |
| ATGTGCTTAATTATGTTACA+TGG | 0.503262 | 4_4:+54444837 | None:intergenic |
| AGGTGTAAATCAATGGGTTG+AGG | 0.504606 | 4_4:+54441837 | None:intergenic |
| GACTTATAAGGATAAACATC+AGG | 0.505538 | 4_4:+54447800 | None:intergenic |
| TTTATGAGAGGGACTCCAAA+TGG | 0.506102 | 4_4:-54442570 | Msa0688470:three_prime_UTR |
| GAGAGGGACTCCAAATGGTT+AGG | 0.506452 | 4_4:-54442565 | Msa0688470:three_prime_UTR |
| GGCGCTGCCAACCCCAGGGG+CGG | 0.508973 | 4_4:-54441894 | Msa0688470:three_prime_UTR |
| TCCTTTGAAAGTATATGGAT+GGG | 0.510514 | 4_4:+54442245 | None:intergenic |
| AAGAGATTTAAGGATGCGAT+GGG | 0.512153 | 4_4:-54442307 | Msa0688470:three_prime_UTR |
| GACTGTTGACAGCGACTATG+AGG | 0.512319 | 4_4:-54442140 | Msa0688470:three_prime_UTR |
| GCGAAGAAGTTTCACTTCGA+TGG | 0.516591 | 4_4:-54442345 | Msa0688470:three_prime_UTR |
| AAGTGTAGCTGCAATGTTCA+AGG | 0.516681 | 4_4:-54442466 | Msa0688470:three_prime_UTR |
| GAGTTTGGATCATTTGGTGA+TGG | 0.518699 | 4_4:-54442112 | Msa0688470:three_prime_UTR |
| GCACAGTAGATGTGAGCTAC+TGG | 0.519260 | 4_4:+54448640 | None:intergenic |
| GCGGAGCCAGCTTGTATCCA+GGG | 0.519414 | 4_4:-54441875 | Msa0688470:three_prime_UTR |
| TGACTGACACCGAGCATCAC+CGG | 0.520466 | 4_4:+54445176 | None:intergenic |
| ATCTGAGTGATTTCGAAGGT+TGG | 0.523296 | 4_4:-54445004 | Msa0688470:three_prime_UTR |
| TTTGTTAAGTGGAGTATGAT+CGG | 0.524360 | 4_4:+54448729 | None:intergenic |
| TACTAGGGTTGTTAATTGGT+GGG | 0.524405 | 4_4:+54446046 | None:intergenic |
| ATACTAGGGTTGTTAATTGG+TGG | 0.527020 | 4_4:+54446045 | None:intergenic |
| CTATCAGAATCGAGTGACTC+AGG | 0.527715 | 4_4:-54442164 | Msa0688470:three_prime_UTR |
| GTTGGCAGCGCCTCCAAGGA+AGG | 0.531784 | 4_4:+54441905 | None:intergenic |
| ATAAATTACCATCACTCTTG+TGG | 0.532243 | 4_4:+54444802 | None:intergenic |
| TGGAGGCGCTGCCAACCCCA+GGG | 0.539733 | 4_4:-54441898 | Msa0688470:three_prime_UTR |
| AGCATGCAGAACCAAACAAT+GGG | 0.540970 | 4_4:-54444503 | Msa0688470:three_prime_UTR |
| AAAGAGATTTAAGGATGCGA+TGG | 0.541017 | 4_4:-54442308 | Msa0688470:three_prime_UTR |
| CCTTTAGATTTGAGAATGAG+AGG | 0.541549 | 4_4:+54444889 | None:intergenic |
| AGTATCGAGAAAAGGGTTGT+GGG | 0.542959 | 4_4:-54445096 | Msa0688470:three_prime_UTR |
| ACCCATCCATATACTTTCAA+AGG | 0.543482 | 4_4:-54442246 | Msa0688470:three_prime_UTR |
| GTGTAAATCAATGGGTTGAG+GGG | 0.544115 | 4_4:+54441839 | None:intergenic |
| GGACCGGACTAAAATGGGCC+TGG | 0.545467 | 4_4:-54446069 | Msa0688470:three_prime_UTR |
| ATGCTGCAGTATCGAGAAAA+GGG | 0.546828 | 4_4:-54445103 | Msa0688470:three_prime_UTR |
| TATACTCCTCAGGATCAAAT+GGG | 0.549641 | 4_4:+54444586 | None:intergenic |
| ATGTATTAGTTGCCAGCTAG+AGG | 0.550525 | 4_4:-54445640 | Msa0688470:three_prime_UTR |
| TGCATCCCCTGGATACAAGC+TGG | 0.551479 | 4_4:+54441869 | None:intergenic |
| AAACAATGGGTCATCATCAA+AGG | 0.556398 | 4_4:-54444490 | Msa0688470:intron |
| CATATACAAAAGTACAAGCT+AGG | 0.558557 | 4_4:-54445457 | Msa0688470:three_prime_UTR |
| CGATTCGGGCTTTATCGGAC+CGG | 0.560470 | 4_4:-54446085 | Msa0688470:three_prime_UTR |
| AGGCAATGTGAGGCCTGAGC+CGG | 0.560985 | 4_4:-54445195 | Msa0688470:three_prime_UTR |
| AATTGATAAAAGAGTATGAA+GGG | 0.568202 | 4_4:+54445577 | None:intergenic |
| AAAATTCGGCACTGGTGTCA+AGG | 0.572645 | 4_4:-54444703 | Msa0688470:three_prime_UTR |
| GTGCAAGCCTTATATTTAAG+GGG | 0.574747 | 4_4:+54441786 | None:intergenic |
| TGAGGAGTATAAAGGAGGCT+GGG | 0.575783 | 4_4:-54444574 | Msa0688470:three_prime_UTR |
| TTTAGTTTCAAGGCGATCAA+GGG | 0.581796 | 4_4:+54445341 | None:intergenic |
| TTGGTTAACCACAAGAGTGA+TGG | 0.581825 | 4_4:-54444810 | Msa0688470:three_prime_UTR |
| CATGTCTCGGCGTTTGCTTG+GGG | 0.583044 | 4_4:+54448561 | None:intergenic |
| ACAAGCTGGCTCCGCCCCTG+GGG | 0.583483 | 4_4:+54441883 | None:intergenic |
| AGAATGAAATTCAAAAGAAG+CGG | 0.584345 | 4_4:+54444671 | None:intergenic |
| CGAGAATCATCATCCCAAGA+TGG | 0.586176 | 4_4:+54442655 | None:intergenic |
| GATTGACCAAGACCTCTAGC+TGG | 0.588589 | 4_4:+54445628 | None:intergenic |
| AACCAAAACAACAAATGTGA+GGG | 0.590681 | 4_4:-54444768 | Msa0688470:three_prime_UTR |
| ACATTTCATCAACATTAGGA+TGG | 0.594673 | 4_4:+54447747 | None:intergenic |
| CCATTAACATATACTGGTGA+AGG | 0.594769 | 4_4:+54445533 | None:intergenic |
| AAATTGATAAAAGAGTATGA+AGG | 0.596513 | 4_4:+54445576 | None:intergenic |
| TTTGCAGCATTGAAATTCAA+CGG | 0.596905 | 4_4:-54445799 | Msa0688470:intron |
| TCCAAGCGGAAGTCCCGCAA+TGG | 0.597080 | 4_4:-54442603 | Msa0688470:three_prime_UTR |
| TTTGTTGGGAGTTCAAAGAA+GGG | 0.597963 | 4_4:-54445962 | Msa0688470:three_prime_UTR |
| AAAGTGGAGATGATCAATGA+TGG | 0.599096 | 4_4:-54448367 | Msa0688470:CDS |
| GAATTTGATCACAAAACTAG+AGG | 0.600009 | 4_4:+54445417 | None:intergenic |
| AACATTGCTGTCCAATAACA+TGG | 0.600667 | 4_4:-54441723 | Msa0688470:three_prime_UTR |
| AAACCAAAACAACAAATGTG+AGG | 0.612820 | 4_4:-54444769 | Msa0688470:three_prime_UTR |
| TTGTTGGGAGTTCAAAGAAG+GGG | 0.613896 | 4_4:-54445961 | Msa0688470:three_prime_UTR |
| AAGCATGCAGAACCAAACAA+TGG | 0.615428 | 4_4:-54444504 | Msa0688470:three_prime_UTR |
| GAAACAGATCTTGTTGGGAG+AGG | 0.616533 | 4_4:-54442499 | Msa0688470:three_prime_UTR |
| TGCAAGCCTTATATTTAAGG+GGG | 0.617619 | 4_4:+54441787 | None:intergenic |
| GACTGGTGTAGTTTATGAGA+GGG | 0.625917 | 4_4:-54442581 | Msa0688470:three_prime_UTR |
| TGTGACAACAAGGAAATGAA+AGG | 0.626119 | 4_4:+54445678 | None:intergenic |
| TTGTTAACAAAACCCATCGA+AGG | 0.626194 | 4_4:+54447776 | None:intergenic |
| GCTTCGTCAAGTACATGTCT+CGG | 0.626335 | 4_4:+54448548 | None:intergenic |
| GGACTGGTGTAGTTTATGAG+AGG | 0.629860 | 4_4:-54442582 | Msa0688470:three_prime_UTR |
| GGTTACAGATGAGAGAGAGC+TGG | 0.633661 | 4_4:+54441764 | None:intergenic |
| CTTGTTGGGAGAGGAAGACG+AGG | 0.636192 | 4_4:-54442490 | Msa0688470:three_prime_UTR |
| TGTAAATCAATGGGTTGAGG+GGG | 0.640499 | 4_4:+54441840 | None:intergenic |
| AATCAAATCTGCAGAAACGA+CGG | 0.640914 | 4_4:+54442681 | None:intergenic |
| GAAGGCAAGAGATGTTCTGT+CGG | 0.647872 | 4_4:-54444532 | Msa0688470:three_prime_UTR |
| AATACACCCATTTGATCCTG+AGG | 0.649632 | 4_4:-54444592 | Msa0688470:three_prime_UTR |
| TGTAGGTCGTCGTTTCCAAG+CGG | 0.650107 | 4_4:-54442617 | Msa0688470:three_prime_UTR |
| CGGAGCCAGCTTGTATCCAG+GGG | 0.652552 | 4_4:-54441874 | Msa0688470:three_prime_UTR |
| TAAACTACACCAGTCCATTG+CGG | 0.653393 | 4_4:+54442589 | None:intergenic |
| CATTTGGTGATGGTTTCGGG+AGG | 0.653419 | 4_4:-54442102 | Msa0688470:three_prime_UTR |
| AAATGGCGATTGTCTTGTCG+AGG | 0.655256 | 4_4:-54445298 | Msa0688470:three_prime_UTR |
| GATCCTGAGGAGTATAAAGG+AGG | 0.656179 | 4_4:-54444579 | Msa0688470:three_prime_UTR |
| AAGGAAGACAAGAAAAGACA+TGG | 0.658301 | 4_4:-54442227 | Msa0688470:three_prime_UTR |
| AAATATCTGAGTGATTTCGA+AGG | 0.658560 | 4_4:-54445008 | Msa0688470:three_prime_UTR |
| GTTGATAACTGATTACAAAG+TGG | 0.659668 | 4_4:-54448383 | Msa0688470:CDS |
| GGTTTGACAGAATCATGCAA+AGG | 0.665715 | 4_4:+54442709 | None:intergenic |
| GGAGGCGCTGCCAACCCCAG+GGG | 0.667660 | 4_4:-54441897 | Msa0688470:three_prime_UTR |
| TCCATGAAATCCATAGATGG+AGG | 0.670812 | 4_4:+54442067 | None:intergenic |
| AGACCAAAATATGAAACACA+AGG | 0.679394 | 4_4:+54448683 | None:intergenic |
| AGAGATTTAAGGATGCGATG+GGG | 0.691782 | 4_4:-54442306 | Msa0688470:three_prime_UTR |
| AAATTATTGAGAATTTATGG+TGG | 0.691884 | 4_4:+54445761 | None:intergenic |
| ATTGTATTAGAGGCAATGTG+AGG | 0.692266 | 4_4:-54445205 | Msa0688470:three_prime_UTR |
| AGGTGTATGGAAGATAAGAG+TGG | 0.712929 | 4_4:-54447828 | Msa0688470:CDS |
| TTTGAGTAGACAAAACAGTG+TGG | 0.748066 | 4_4:-54442016 | Msa0688470:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTAATAATGAATTTCA+GGG | - | chr4_4:54442753-54442772 | Msa0688470:intron | 10.0% |
| !!! | AAGATTTTCTAATTTTAAAA+TGG | + | chr4_4:54442899-54442918 | None:intergenic | 10.0% |
| !! | TATATTTGATAAAAATTAAC+GGG | - | chr4_4:54444060-54444079 | Msa0688470:intron | 10.0% |
| !!! | AAGATTTTGTAATTTTAAAA+CGG | + | chr4_4:54444162-54444181 | None:intergenic | 10.0% |
| !! | AAAAAATAAAAATCAAACTT+GGG | + | chr4_4:54444312-54444331 | None:intergenic | 10.0% |
| !! | AAAAAAATAAAAATCAAACT+TGG | + | chr4_4:54444313-54444332 | None:intergenic | 10.0% |
| !! | CTAATACATAAAAAAAAAAA+TGG | + | chr4_4:54444795-54444814 | None:intergenic | 10.0% |
| !! | TTAATATAATAAAGATATCA+GGG | - | chr4_4:54446235-54446254 | Msa0688470:intron | 10.0% |
| !!! | TTGCATTTTTATTTTTTTAA+AGG | - | chr4_4:54446612-54446631 | Msa0688470:intron | 10.0% |
| !! | AAATAAAAAAAAAATAGAAC+AGG | + | chr4_4:54447159-54447178 | None:intergenic | 10.0% |
| !!! | ATTTTCATTTTTTTTATTAG+GGG | - | chr4_4:54447343-54447362 | Msa0688470:intron | 10.0% |
| !! | AAAAAGATTACAAATTTAGA+GGG | + | chr4_4:54441986-54442005 | None:intergenic | 15.0% |
| !! | AAAAAAGATTACAAATTTAG+AGG | + | chr4_4:54441987-54442006 | None:intergenic | 15.0% |
| !!! | ATTTGTAATCTTTTTGTAAT+TGG | - | chr4_4:54442025-54442044 | Msa0688470:three_prime_UTR | 15.0% |
| !!! | TTTGTAATCTTTTTGTAATT+GGG | - | chr4_4:54442026-54442045 | Msa0688470:three_prime_UTR | 15.0% |
| !! | CAAAAATAAACAAAAACTAA+AGG | + | chr4_4:54442431-54442450 | None:intergenic | 15.0% |
| !!! | GATTTTTAATAATGAATTTC+AGG | - | chr4_4:54442752-54442771 | Msa0688470:intron | 15.0% |
| !!! | ATTTAAAATGACAATAAACA+AGG | + | chr4_4:54442842-54442861 | None:intergenic | 15.0% |
| !!! | ATTTTTATATTGTCTATACA+AGG | - | chr4_4:54442931-54442950 | Msa0688470:intron | 15.0% |
| !!! | TTTTTTTTATTGTTTTCCAA+GGG | - | chr4_4:54443270-54443289 | Msa0688470:intron | 15.0% |
| !! | TAAATTTCTTAAAACTCTTT+AGG | + | chr4_4:54443299-54443318 | None:intergenic | 15.0% |
| !!! | TTTTTTTTATTGTTTTCCAA+GGG | - | chr4_4:54443270-54443289 | Msa0688470:intron | 15.0% |
| !!! | TTTTGAATAACTTTTTTGAT+AGG | + | chr4_4:54443448-54443467 | None:intergenic | 15.0% |
| !!! | CAAGTCTTATATATTTTAAA+AGG | + | chr4_4:54443570-54443589 | None:intergenic | 15.0% |
| !!! | CAAAGATTAATATATTTTGT+TGG | - | chr4_4:54443728-54443747 | Msa0688470:intron | 15.0% |
| !!! | TATAATTTAGAATTTGAGTT+GGG | + | chr4_4:54443945-54443964 | None:intergenic | 15.0% |
| !! | ATATTTGATAAAAATTAACG+GGG | - | chr4_4:54444061-54444080 | Msa0688470:intron | 15.0% |
| !! | AAAAATAAAAATCAAACTTG+GGG | + | chr4_4:54444311-54444330 | None:intergenic | 15.0% |
| !!! | TTTATTTTTTTTATCATCGT+AGG | - | chr4_4:54444322-54444341 | Msa0688470:intron | 15.0% |
| !! | ATATTAGGTTAAAATTCAAA+AGG | + | chr4_4:54444610-54444629 | None:intergenic | 15.0% |
| !! | TGAAAATTATTGAGAATTTA+TGG | + | chr4_4:54444691-54444710 | None:intergenic | 15.0% |
| !!! | ATGTTTTGTCAATTTTTTTT+CGG | - | chr4_4:54445203-54445222 | Msa0688470:three_prime_UTR | 15.0% |
| !! | GTTAATATAATAAAGATATC+AGG | - | chr4_4:54446234-54446253 | Msa0688470:intron | 15.0% |
| !! | TAATTTAGAAAATGATTATG+TGG | - | chr4_4:54447202-54447221 | Msa0688470:intron | 15.0% |
| !!! | TTTTCATTTTTTTTATTAGG+GGG | - | chr4_4:54447344-54447363 | Msa0688470:intron | 15.0% |
| !! | GTTATTACATAAAATACATA+GGG | + | chr4_4:54447457-54447476 | None:intergenic | 15.0% |
| !!! | ACTGTTTTAATTTTGTTAAG+TGG | + | chr4_4:54441731-54441750 | None:intergenic | 20.0% |
| !! | AAAAGATTACAAATTTAGAG+GGG | + | chr4_4:54441985-54442004 | None:intergenic | 20.0% |
| !! | GTTAGAAATTTACTATGTTT+AGG | + | chr4_4:54442136-54442155 | None:intergenic | 20.0% |
| !!! | AGTTGTTCATTATTTTCTAA+GGG | - | chr4_4:54442723-54442742 | Msa0688470:three_prime_UTR | 20.0% |
| !!! | GTTTTTTTTATTGTTTTCCA+AGG | - | chr4_4:54443269-54443288 | Msa0688470:intron | 20.0% |
| !!! | GTTTTTTTTATTGTTTTCCA+AGG | - | chr4_4:54443269-54443288 | Msa0688470:intron | 20.0% |
| !!! | ACGATTTTGTAATTTTAAAC+TGG | + | chr4_4:54443523-54443542 | None:intergenic | 20.0% |
| !! | AATAATGATAAAATCTAACC+TGG | + | chr4_4:54443685-54443704 | None:intergenic | 20.0% |
| !!! | GTATAATTTAGAATTTGAGT+TGG | + | chr4_4:54443946-54443965 | None:intergenic | 20.0% |
| !! | TATTTGATAAAAATTAACGG+GGG | - | chr4_4:54444062-54444081 | Msa0688470:intron | 20.0% |
| !! | TATTTCCTTAATCAAACTTA+GGG | + | chr4_4:54444274-54444293 | None:intergenic | 20.0% |
| !! | TTTGATTAAGGAAATAGATT+CGG | - | chr4_4:54444278-54444297 | Msa0688470:intron | 20.0% |
| !! | AAAATAAAAATCAAACTTGG+GGG | + | chr4_4:54444310-54444329 | None:intergenic | 20.0% |
| !! | CTTTATAATGCTAAATACTA+GGG | + | chr4_4:54444418-54444437 | None:intergenic | 20.0% |
| !!! | ATGTCAAAAAATCATTTTGT+TGG | - | chr4_4:54444469-54444488 | Msa0688470:intron | 20.0% |
| !!! | TGTCAAAAAATCATTTTGTT+GGG | - | chr4_4:54444470-54444489 | Msa0688470:intron | 20.0% |
| !! | AAATTATTGAGAATTTATGG+TGG | + | chr4_4:54444688-54444707 | None:intergenic | 20.0% |
| !! | CTGCTAATAAAAATATCAAA+TGG | - | chr4_4:54444840-54444859 | Msa0688470:three_prime_UTR | 20.0% |
| !!! | AATTGATAAAAGAGTATGAA+GGG | + | chr4_4:54444872-54444891 | None:intergenic | 20.0% |
| !!! | AAATTGATAAAAGAGTATGA+AGG | + | chr4_4:54444873-54444892 | None:intergenic | 20.0% |
| !!! | TAGTAAAAGTTTTAGTTTCA+AGG | + | chr4_4:54445118-54445137 | None:intergenic | 20.0% |
| !! | TTTACTAAATTTCATGCAAA+TGG | - | chr4_4:54445131-54445150 | Msa0688470:three_prime_UTR | 20.0% |
| !! | AAGAAAAGAGTTTCAAAAAT+TGG | - | chr4_4:54445481-54445500 | Msa0688470:three_prime_UTR | 20.0% |
| !!! | TTATACATGATTTTACACAT+TGG | - | chr4_4:54446004-54446023 | Msa0688470:three_prime_UTR | 20.0% |
| !!! | TGATTTTGAATACTTGATTT+CGG | + | chr4_4:54446648-54446667 | None:intergenic | 20.0% |
| !! | AAAAAAAAAATAGAACAGGA+AGG | + | chr4_4:54447155-54447174 | None:intergenic | 20.0% |
| !! | CGTTATTACATAAAATACAT+AGG | + | chr4_4:54447458-54447477 | None:intergenic | 20.0% |
| !! | CTAAATTATCTATCAAACTA+TGG | + | chr4_4:54447547-54447566 | None:intergenic | 20.0% |
| !!! | ACAAATAAAATTCCATCTTT+TGG | + | chr4_4:54447656-54447675 | None:intergenic | 20.0% |
| !!! | GGAATTTTATTTGTATTATG+TGG | - | chr4_4:54447662-54447681 | Msa0688470:intron | 20.0% |
| !! | ACATATATCTGTTGTTAAAA+TGG | - | chr4_4:54448502-54448521 | Msa0688470:intron | 20.0% |
| !! | AATAATAGGTGTAAATCAAT+GGG | + | chr4_4:54448618-54448637 | None:intergenic | 20.0% |
| !! | AAATAATAGGTGTAAATCAA+TGG | + | chr4_4:54448619-54448638 | None:intergenic | 20.0% |
| !! | TGAAAGAAACACAAAATAAT+AGG | + | chr4_4:54448632-54448651 | None:intergenic | 20.0% |
| ! | AAAGTGAAAACTTTCTCATT+TGG | - | chr4_4:54441693-54441712 | Msa0688470:three_prime_UTR | 25.0% |
| ! | AGGGAAAAAAATTGATACAA+GGG | + | chr4_4:54442161-54442180 | None:intergenic | 25.0% |
| ! | TAAAGGAAGAACATTTCAAT+TGG | + | chr4_4:54442233-54442252 | None:intergenic | 25.0% |
| ! | TATAGAATCTACAGTACTAA+AGG | + | chr4_4:54442250-54442269 | None:intergenic | 25.0% |
| ! | ATATGTTTCAATTCTATGTG+TGG | - | chr4_4:54442267-54442286 | Msa0688470:three_prime_UTR | 25.0% |
| !! | GAGTTGTTCATTATTTTCTA+AGG | - | chr4_4:54442722-54442741 | Msa0688470:three_prime_UTR | 25.0% |
| !! | TGTGTAGTTTTTATAAAGCT+TGG | - | chr4_4:54443876-54443895 | Msa0688470:intron | 25.0% |
| !! | GTGTAGTTTTTATAAAGCTT+GGG | - | chr4_4:54443877-54443896 | Msa0688470:intron | 25.0% |
| ! | CAAATTCTAAATTATACACG+AGG | - | chr4_4:54443949-54443968 | Msa0688470:intron | 25.0% |
| ! | ATTTGATAAAAATTAACGGG+GGG | - | chr4_4:54444063-54444082 | Msa0688470:intron | 25.0% |
| !! | ATTGTCTTTTACCATGTATA+AGG | - | chr4_4:54444202-54444221 | Msa0688470:intron | 25.0% |
| ! | ACATATGAAAACCTTATACA+TGG | + | chr4_4:54444216-54444235 | None:intergenic | 25.0% |
| ! | CTATTTCCTTAATCAAACTT+AGG | + | chr4_4:54444275-54444294 | None:intergenic | 25.0% |
| ! | AAATAAAAATCAAACTTGGG+GGG | + | chr4_4:54444309-54444328 | None:intergenic | 25.0% |
| ! | TAAATACTAGGGTTGTTAAT+TGG | + | chr4_4:54444407-54444426 | None:intergenic | 25.0% |
| ! | CCTTTATAATGCTAAATACT+AGG | + | chr4_4:54444419-54444438 | None:intergenic | 25.0% |
| ! | CCTAGTATTTAGCATTATAA+AGG | - | chr4_4:54444416-54444435 | Msa0688470:intron | 25.0% |
| ! | AAAAAAGTGAGCTGAATATT+AGG | + | chr4_4:54444625-54444644 | None:intergenic | 25.0% |
| !! | TGTACTTTTGTATATGTTGA+TGG | + | chr4_4:54444985-54445004 | None:intergenic | 25.0% |
| !! | TGACAAAACATAGATTTTTG+AGG | + | chr4_4:54445194-54445213 | None:intergenic | 25.0% |
| ! | AAGAGTTTCAAAAATTGGAA+TGG | - | chr4_4:54445486-54445505 | Msa0688470:three_prime_UTR | 25.0% |
| ! | ATGTGCTTAATTATGTTACA+TGG | + | chr4_4:54445612-54445631 | None:intergenic | 25.0% |
| !! | CATAATTAAGCACATTGATT+TGG | - | chr4_4:54445617-54445636 | Msa0688470:three_prime_UTR | 25.0% |
| ! | AGAATGAAATTCAAAAGAAG+CGG | + | chr4_4:54445778-54445797 | None:intergenic | 25.0% |
| ! | GGTCAATAATAAAGATATCA+GGG | - | chr4_4:54446256-54446275 | Msa0688470:intron | 25.0% |
| ! | ATATAGATACACACATCAAT+TGG | + | chr4_4:54446437-54446456 | None:intergenic | 25.0% |
| ! | ATTGATGTGTGTATCTATAT+TGG | - | chr4_4:54446437-54446456 | Msa0688470:intron | 25.0% |
| ! | AAGCAAAGAGAAAAAAAAGA+CGG | + | chr4_4:54446721-54446740 | None:intergenic | 25.0% |
| ! | TAAATTAGTAATTACAGACG+TGG | - | chr4_4:54447242-54447261 | Msa0688470:intron | 25.0% |
| ! | ATTATCTATCAAACTATGGT+TGG | + | chr4_4:54447543-54447562 | None:intergenic | 25.0% |
| !!! | GGTTTTGAATGATTTTTAAC+AGG | + | chr4_4:54447920-54447939 | None:intergenic | 25.0% |
| ! | TGATGAAGAAAAGAGATTTA+AGG | - | chr4_4:54448129-54448148 | Msa0688470:intron | 25.0% |
| ! | TGACTCTTCCAAATTATTTA+AGG | - | chr4_4:54448764-54448783 | Msa0688470:CDS | 25.0% |
| TTTGTTAAGTGGAGTATGAT+CGG | + | chr4_4:54441720-54441739 | None:intergenic | 30.0% | |
| ! | TCTCCTTGTGTTTCATATTT+TGG | - | chr4_4:54441760-54441779 | Msa0688470:three_prime_UTR | 30.0% |
| AGACCAAAATATGAAACACA+AGG | + | chr4_4:54441766-54441785 | None:intergenic | 30.0% | |
| !! | GTTGATAACTGATTACAAAG+TGG | - | chr4_4:54442063-54442082 | Msa0688470:three_prime_UTR | 30.0% |
| GAGGGAAAAAAATTGATACA+AGG | + | chr4_4:54442162-54442181 | None:intergenic | 30.0% | |
| !!! | AATTTTTTTCCCTCTTTGTG+TGG | - | chr4_4:54442168-54442187 | Msa0688470:three_prime_UTR | 30.0% |
| AATGAAATTCCACACAAAGA+GGG | + | chr4_4:54442180-54442199 | None:intergenic | 30.0% | |
| AATTACAGGACATAATCCAT+AGG | + | chr4_4:54442322-54442341 | None:intergenic | 30.0% | |
| ! | CTTTTATTACAACTCATTGC+AGG | - | chr4_4:54442598-54442617 | Msa0688470:three_prime_UTR | 30.0% |
| GACTTATAAGGATAAACATC+AGG | + | chr4_4:54442649-54442668 | None:intergenic | 30.0% | |
| ACATTTCATCAACATTAGGA+TGG | + | chr4_4:54442702-54442721 | None:intergenic | 30.0% | |
| ACTCACATTTCATCAACATT+AGG | + | chr4_4:54442706-54442725 | None:intergenic | 30.0% | |
| !!! | CAAGGAAGCATTTTTTTGAT+AGG | + | chr4_4:54442824-54442843 | None:intergenic | 30.0% |
| CAAACTTAGGCAAATGTATT+AGG | + | chr4_4:54442990-54443009 | None:intergenic | 30.0% | |
| GGTATGCAATAATCAAACTT+AGG | + | chr4_4:54443003-54443022 | None:intergenic | 30.0% | |
| AACTCACATTGCATAACATT+AGG | + | chr4_4:54443252-54443271 | None:intergenic | 30.0% | |
| AACTCACATTGCATAACATT+AGG | + | chr4_4:54443252-54443271 | None:intergenic | 30.0% | |
| !!! | ACACCTAAAGAGTTTTAAGA+AGG | - | chr4_4:54443293-54443312 | Msa0688470:intron | 30.0% |
| CTTCCTTCTTAAAACTCTTT+AGG | + | chr4_4:54443373-54443392 | None:intergenic | 30.0% | |
| !!! | AGTTTTAAGAAGGAAGTTCA+GGG | - | chr4_4:54443377-54443396 | Msa0688470:intron | 30.0% |
| AACGAACATGACTACTAATT+TGG | - | chr4_4:54443413-54443432 | Msa0688470:intron | 30.0% | |
| TGATAAAATCTAACCTGGTT+AGG | + | chr4_4:54443680-54443699 | None:intergenic | 30.0% | |
| TAACTCAAGCTTATTAAACC+GGG | + | chr4_4:54443920-54443939 | None:intergenic | 30.0% | |
| CTAACTCAAGCTTATTAAAC+CGG | + | chr4_4:54443921-54443940 | None:intergenic | 30.0% | |
| TTTGATAAAAATTAACGGGG+GGG | - | chr4_4:54444064-54444083 | Msa0688470:intron | 30.0% | |
| CAAGATTTGAGAAATGACTT+TGG | + | chr4_4:54444109-54444128 | None:intergenic | 30.0% | |
| AAAGAAGGGGAATGAAATAA+AGG | - | chr4_4:54444498-54444517 | Msa0688470:three_prime_UTR | 30.0% | |
| ATCGCGAAAACAAATGATTA+AGG | + | chr4_4:54444576-54444595 | None:intergenic | 30.0% | |
| ! | TTTGCAGCATTGAAATTCAA+CGG | - | chr4_4:54444647-54444666 | Msa0688470:three_prime_UTR | 30.0% |
| GACATACCATTAACATATAC+TGG | + | chr4_4:54444922-54444941 | None:intergenic | 30.0% | |
| ! | CATATACAAAAGTACAAGCT+AGG | - | chr4_4:54444989-54445008 | Msa0688470:three_prime_UTR | 30.0% |
| GAATTTGATCACAAAACTAG+AGG | + | chr4_4:54445032-54445051 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTCGGTTTACCAAG+AGG | - | chr4_4:54445215-54445234 | Msa0688470:three_prime_UTR | 30.0% |
| AAATATCTGAGTGATTTCGA+AGG | - | chr4_4:54445438-54445457 | Msa0688470:three_prime_UTR | 30.0% | |
| AGTTTCAAAAATTGGAATGG+TGG | - | chr4_4:54445489-54445508 | Msa0688470:three_prime_UTR | 30.0% | |
| GTTTCAAAAATTGGAATGGT+GGG | - | chr4_4:54445490-54445509 | Msa0688470:three_prime_UTR | 30.0% | |
| ! | AGCTCTTTTTCTAGATCTAT+TGG | + | chr4_4:54445531-54445550 | None:intergenic | 30.0% |
| ATAAATTACCATCACTCTTG+TGG | + | chr4_4:54445647-54445666 | None:intergenic | 30.0% | |
| CAAGAGTGATGGTAATTTAT+TGG | - | chr4_4:54445647-54445666 | Msa0688470:three_prime_UTR | 30.0% | |
| AAACCAAAACAACAAATGTG+AGG | - | chr4_4:54445677-54445696 | Msa0688470:three_prime_UTR | 30.0% | |
| AACCAAAACAACAAATGTGA+GGG | - | chr4_4:54445678-54445697 | Msa0688470:three_prime_UTR | 30.0% | |
| ! | TACCATCACCGTTAAAATTT+TGG | + | chr4_4:54445707-54445726 | None:intergenic | 30.0% |
| GAGGATGACAATGAAAAATT+CGG | - | chr4_4:54445729-54445748 | Msa0688470:three_prime_UTR | 30.0% | |
| ACGTAAAAGGGAATCATTAT+CGG | - | chr4_4:54445803-54445822 | Msa0688470:intron | 30.0% | |
| CATTATCGGAAATGATAAAC+TGG | - | chr4_4:54445817-54445836 | Msa0688470:intron | 30.0% | |
| GGGTCAATAATAAAGATATC+AGG | - | chr4_4:54446255-54446274 | Msa0688470:intron | 30.0% | |
| AGTGCAGTTACAATTCTTAA+TGG | + | chr4_4:54446348-54446367 | None:intergenic | 30.0% | |
| !! | CACATCAATTGGTATTGATT+GGG | + | chr4_4:54446426-54446445 | None:intergenic | 30.0% |
| !! | ACACATCAATTGGTATTGAT+TGG | + | chr4_4:54446427-54446446 | None:intergenic | 30.0% |
| GTGAATTGTGTGATTTAGTT+GGG | + | chr4_4:54446519-54446538 | None:intergenic | 30.0% | |
| TGTGAATTGTGTGATTTAGT+TGG | + | chr4_4:54446520-54446539 | None:intergenic | 30.0% | |
| TATTTACATACCAGTATGCA+CGG | + | chr4_4:54446577-54446596 | None:intergenic | 30.0% | |
| GTATGTAAATATCCTGTCAA+TGG | - | chr4_4:54446586-54446605 | Msa0688470:intron | 30.0% | |
| AAAATGCAAAAACCATTGAC+AGG | + | chr4_4:54446601-54446620 | None:intergenic | 30.0% | |
| AGCAAAGAGAAAAAAAAGAC+GGG | + | chr4_4:54446720-54446739 | None:intergenic | 30.0% | |
| TATGAATGCTACGTAAAAAC+AGG | + | chr4_4:54446750-54446769 | None:intergenic | 30.0% | |
| ! | TTTTACGTAGCATTCATAGA+AGG | - | chr4_4:54446752-54446771 | Msa0688470:intron | 30.0% |
| AACTTCAGTAACAACAACAA+TGG | + | chr4_4:54446797-54446816 | None:intergenic | 30.0% | |
| ATTTGATGTTGTAGATGTTG+TGG | - | chr4_4:54446835-54446854 | Msa0688470:intron | 30.0% | |
| AGATTTGATTAAGCCATCTT+GGG | - | chr4_4:54447778-54447797 | Msa0688470:CDS | 30.0% | |
| ACCAAACTGAAGTTTGAATT+GGG | - | chr4_4:54448043-54448062 | Msa0688470:intron | 30.0% | |
| CATTGGGGATTTGATAAAAT+GGG | - | chr4_4:54448079-54448098 | Msa0688470:intron | 30.0% | |
| !!! | AAAAAGACTTGTTTTGGGAA+GGG | + | chr4_4:54448174-54448193 | None:intergenic | 30.0% |
| !! | GTTCCAAAAAGACTTGTTTT+GGG | + | chr4_4:54448179-54448198 | None:intergenic | 30.0% |
| !! | TGTTCCAAAAAGACTTGTTT+TGG | + | chr4_4:54448180-54448199 | None:intergenic | 30.0% |
| ! | TCCTTTGAAAGTATATGGAT+GGG | + | chr4_4:54448204-54448223 | None:intergenic | 30.0% |
| ! | TTCCTTTGAAAGTATATGGA+TGG | + | chr4_4:54448205-54448224 | None:intergenic | 30.0% |
| ! | TGTCTTCCTTTGAAAGTATA+TGG | + | chr4_4:54448209-54448228 | None:intergenic | 30.0% |
| ! | TAATTGGGTTGTTGTGAATC+AGG | - | chr4_4:54442041-54442060 | Msa0688470:three_prime_UTR | 35.0% |
| AAAGTGGAGATGATCAATGA+TGG | - | chr4_4:54442079-54442098 | Msa0688470:three_prime_UTR | 35.0% | |
| CAATGAAATTCCACACAAAG+AGG | + | chr4_4:54442181-54442200 | None:intergenic | 35.0% | |
| CAAGTAAGGTACACAATTAC+AGG | + | chr4_4:54442336-54442355 | None:intergenic | 35.0% | |
| GGAAAATGAGCAAACAAGTA+AGG | + | chr4_4:54442350-54442369 | None:intergenic | 35.0% | |
| ! | TTTGCTCATTTTCCTCAATG+AGG | - | chr4_4:54442356-54442375 | Msa0688470:three_prime_UTR | 35.0% |
| AATGCAATTGATCCTCATTG+AGG | + | chr4_4:54442371-54442390 | None:intergenic | 35.0% | |
| CAATGAGGATCAATTGCATT+AGG | - | chr4_4:54442371-54442390 | Msa0688470:three_prime_UTR | 35.0% | |
| TAACACAACTGTGACTTTAG+AGG | - | chr4_4:54442532-54442551 | Msa0688470:three_prime_UTR | 35.0% | |
| AACACAACTGTGACTTTAGA+GGG | - | chr4_4:54442533-54442552 | Msa0688470:three_prime_UTR | 35.0% | |
| TTGTTAACAAAACCCATCGA+AGG | + | chr4_4:54442673-54442692 | None:intergenic | 35.0% | |
| TAACAAAGTCTGACCTGATT+AGG | + | chr4_4:54443029-54443048 | None:intergenic | 35.0% | |
| ! | AGTTTAAGTGAGTTGAGCTT+CGG | - | chr4_4:54443071-54443090 | Msa0688470:intron | 35.0% |
| ! | TGATTTGCAAGTACCTTTCT+TGG | + | chr4_4:54443139-54443158 | None:intergenic | 35.0% |
| CACATTGCATAACATTAGGA+TGG | + | chr4_4:54443248-54443267 | None:intergenic | 35.0% | |
| CACATTGCATAACATTAGGA+TGG | + | chr4_4:54443248-54443267 | None:intergenic | 35.0% | |
| !!! | GAGTTTTAAGAAGGAAGTTC+AGG | - | chr4_4:54443376-54443395 | Msa0688470:intron | 35.0% |
| ! | ATCCAACACAATGAAAGTGT+TGG | + | chr4_4:54443813-54443832 | None:intergenic | 35.0% |
| TTCATTGTGTTGGATGTGAA+TGG | - | chr4_4:54443818-54443837 | Msa0688470:intron | 35.0% | |
| CGGTTTAATAAGCTTGAGTT+AGG | - | chr4_4:54443919-54443938 | Msa0688470:intron | 35.0% | |
| CAAACTTAGGGAGATGTATT+TGG | + | chr4_4:54444262-54444281 | None:intergenic | 35.0% | |
| CATCTCCCTAAGTTTGATTA+AGG | - | chr4_4:54444266-54444285 | Msa0688470:intron | 35.0% | |
| ! | TTGACTTGACCTAATCGATT+CGG | - | chr4_4:54444346-54444365 | Msa0688470:intron | 35.0% |
| TACTAGGGTTGTTAATTGGT+GGG | + | chr4_4:54444403-54444422 | None:intergenic | 35.0% | |
| ATACTAGGGTTGTTAATTGG+TGG | + | chr4_4:54444404-54444423 | None:intergenic | 35.0% | |
| ! | TTTTGTTGGGAGTTCAAAGA+AGG | - | chr4_4:54444483-54444502 | Msa0688470:intron | 35.0% |
| TTTGTTGGGAGTTCAAAGAA+GGG | - | chr4_4:54444484-54444503 | Msa0688470:intron | 35.0% | |
| GAATTTATGGTGGTACTAAC+TGG | + | chr4_4:54444678-54444697 | None:intergenic | 35.0% | |
| TGTGACAACAAGGAAATGAA+AGG | + | chr4_4:54444771-54444790 | None:intergenic | 35.0% | |
| AAAAAATGGCTGTGACAACA+AGG | + | chr4_4:54444781-54444800 | None:intergenic | 35.0% | |
| CCATTAACATATACTGGTGA+AGG | + | chr4_4:54444916-54444935 | None:intergenic | 35.0% | |
| CCTTCACCAGTATATGTTAA+TGG | - | chr4_4:54444913-54444932 | Msa0688470:three_prime_UTR | 35.0% | |
| ! | TTTAGTTTCAAGGCGATCAA+GGG | + | chr4_4:54445108-54445127 | None:intergenic | 35.0% |
| !!! | TTTTAGTTTCAAGGCGATCA+AGG | + | chr4_4:54445109-54445128 | None:intergenic | 35.0% |
| CTCTAATACAATTCTCCTCT+TGG | + | chr4_4:54445233-54445252 | None:intergenic | 35.0% | |
| CAAGAGGAGAATTGTATTAG+AGG | - | chr4_4:54445231-54445250 | Msa0688470:three_prime_UTR | 35.0% | |
| ATTGTATTAGAGGCAATGTG+AGG | - | chr4_4:54445241-54445260 | Msa0688470:three_prime_UTR | 35.0% | |
| TCACTGAAGCCAAAACATTA+AGG | + | chr4_4:54445404-54445423 | None:intergenic | 35.0% | |
| CCTTTAGATTTGAGAATGAG+AGG | + | chr4_4:54445560-54445579 | None:intergenic | 35.0% | |
| CCTCTCATTCTCAAATCTAA+AGG | - | chr4_4:54445557-54445576 | Msa0688470:three_prime_UTR | 35.0% | |
| !!! | GAGGGTGTCCAAAATTTTAA+CGG | - | chr4_4:54445696-54445715 | Msa0688470:three_prime_UTR | 35.0% |
| !! | GTCCAAAATTTTAACGGTGA+TGG | - | chr4_4:54445702-54445721 | Msa0688470:three_prime_UTR | 35.0% |
| !! | TTTTAACGGTGATGGTAATG+AGG | - | chr4_4:54445710-54445729 | Msa0688470:three_prime_UTR | 35.0% |
| TTCATTCTCGCAAACGTAAA+AGG | - | chr4_4:54445790-54445809 | Msa0688470:three_prime_UTR | 35.0% | |
| TCATTCTCGCAAACGTAAAA+GGG | - | chr4_4:54445791-54445810 | Msa0688470:three_prime_UTR | 35.0% | |
| TATACTCCTCAGGATCAAAT+GGG | + | chr4_4:54445863-54445882 | None:intergenic | 35.0% | |
| TTATACTCCTCAGGATCAAA+TGG | + | chr4_4:54445864-54445883 | None:intergenic | 35.0% | |
| ! | TTTGATCCTGAGGAGTATAA+AGG | - | chr4_4:54445864-54445883 | Msa0688470:intron | 35.0% |
| !!! | CTTTTTTGTTCAGATGCTGA+AGG | - | chr4_4:54445896-54445915 | Msa0688470:intron | 35.0% |
| !! | TTTGATGATGACCCATTGTT+TGG | + | chr4_4:54445957-54445976 | None:intergenic | 35.0% |
| AAACAATGGGTCATCATCAA+AGG | - | chr4_4:54445956-54445975 | Msa0688470:three_prime_UTR | 35.0% | |
| !! | ATGTGAAAACATTCTGGTTC+AGG | + | chr4_4:54446048-54446067 | None:intergenic | 35.0% |
| CCATTCATGTGAAAACATTC+TGG | + | chr4_4:54446054-54446073 | None:intergenic | 35.0% | |
| ! | CCAGAATGTTTTCACATGAA+TGG | - | chr4_4:54446051-54446070 | Msa0688470:three_prime_UTR | 35.0% |
| !! | CATGATTTGCATTTTGCTGT+GGG | - | chr4_4:54446468-54446487 | Msa0688470:intron | 35.0% |
| CTTCAACGGTGATTCAAATT+TGG | + | chr4_4:54446672-54446691 | None:intergenic | 35.0% | |
| TGTTGTTACTGAAGTTGTTG+TGG | - | chr4_4:54446801-54446820 | Msa0688470:intron | 35.0% | |
| CAACAACAACACTGATCTAA+AGG | + | chr4_4:54446879-54446898 | None:intergenic | 35.0% | |
| ! | CTTTAGATCAGTGTTGTTGT+TGG | - | chr4_4:54446877-54446896 | Msa0688470:intron | 35.0% |
| AGCTGTTGTAGTTACACATT+TGG | - | chr4_4:54446900-54446919 | Msa0688470:intron | 35.0% | |
| TAAGGAGATGAATCAAGAAG+AGG | - | chr4_4:54446956-54446975 | Msa0688470:intron | 35.0% | |
| AAGAAGAGGTGGAAGATAAA+CGG | - | chr4_4:54446970-54446989 | Msa0688470:intron | 35.0% | |
| CAAAAGAGCAACATTGGAAA+TGG | + | chr4_4:54447106-54447125 | None:intergenic | 35.0% | |
| GTGTTTCAAAAGAGCAACAT+TGG | + | chr4_4:54447112-54447131 | None:intergenic | 35.0% | |
| ATAGAACAGGAAGGATGAAT+GGG | + | chr4_4:54447146-54447165 | None:intergenic | 35.0% | |
| AATAGAACAGGAAGGATGAA+TGG | + | chr4_4:54447147-54447166 | None:intergenic | 35.0% | |
| !!! | CAAAAGGTCACTTTTGCAAA+GGG | - | chr4_4:54447300-54447319 | Msa0688470:intron | 35.0% |
| !!! | AAAAGGTCACTTTTGCAAAG+GGG | - | chr4_4:54447301-54447320 | Msa0688470:intron | 35.0% |
| ! | CTTTGTCAATGTTGCGATTT+TGG | + | chr4_4:54447370-54447389 | None:intergenic | 35.0% |
| ATCGCAACATTGACAAAGTT+AGG | - | chr4_4:54447372-54447391 | Msa0688470:intron | 35.0% | |
| TCGCAACATTGACAAAGTTA+GGG | - | chr4_4:54447373-54447392 | Msa0688470:intron | 35.0% | |
| ATAAGCAGTGCATAAGGTTT+AGG | + | chr4_4:54447419-54447438 | None:intergenic | 35.0% | |
| GAACTTGCCATGTTATTGTT+TGG | - | chr4_4:54447481-54447500 | Msa0688470:intron | 35.0% | |
| CAGATCTCCAAACAATAACA+TGG | + | chr4_4:54447491-54447510 | None:intergenic | 35.0% | |
| ! | ATCTTTTGGATCTTGTCTAC+TGG | + | chr4_4:54447642-54447661 | None:intergenic | 35.0% |
| AGTAGACAAGATCCAAAAGA+TGG | - | chr4_4:54447641-54447660 | Msa0688470:intron | 35.0% | |
| AATCAAATCTGCAGAAACGA+CGG | + | chr4_4:54447768-54447787 | None:intergenic | 35.0% | |
| CAGATTTGATTAAGCCATCT+TGG | - | chr4_4:54447777-54447796 | Msa0688470:CDS | 35.0% | |
| ACAAGATCTGTTTCAGTTGT+AGG | + | chr4_4:54447941-54447960 | None:intergenic | 35.0% | |
| ACAACTGAAACAGATCTTGT+TGG | - | chr4_4:54447941-54447960 | Msa0688470:intron | 35.0% | |
| CAACTGAAACAGATCTTGTT+GGG | - | chr4_4:54447942-54447961 | Msa0688470:intron | 35.0% | |
| GACCAAACTGAAGTTTGAAT+TGG | - | chr4_4:54448042-54448061 | Msa0688470:intron | 35.0% | |
| ACCCAATTCAAACTTCAGTT+TGG | + | chr4_4:54448047-54448066 | None:intergenic | 35.0% | |
| ! | CCATTTTATCAAATCCCCAA+TGG | + | chr4_4:54448081-54448100 | None:intergenic | 35.0% |
| CCATTGGGGATTTGATAAAA+TGG | - | chr4_4:54448078-54448097 | Msa0688470:intron | 35.0% | |
| AAAGAGATTTAAGGATGCGA+TGG | - | chr4_4:54448138-54448157 | Msa0688470:intron | 35.0% | |
| AAGAGATTTAAGGATGCGAT+GGG | - | chr4_4:54448139-54448158 | Msa0688470:intron | 35.0% | |
| !!! | CAAAAAGACTTGTTTTGGGA+AGG | + | chr4_4:54448175-54448194 | None:intergenic | 35.0% |
| ! | CTTCCCAAAACAAGTCTTTT+TGG | - | chr4_4:54448173-54448192 | Msa0688470:intron | 35.0% |
| ACCCATCCATATACTTTCAA+AGG | - | chr4_4:54448200-54448219 | Msa0688470:intron | 35.0% | |
| AAGGAAGACAAGAAAAGACA+TGG | - | chr4_4:54448219-54448238 | Msa0688470:intron | 35.0% | |
| GAAGTTGAGTTTGGATCATT+TGG | - | chr4_4:54448328-54448347 | Msa0688470:CDS | 35.0% | |
| TTTGAGTAGACAAAACAGTG+TGG | - | chr4_4:54448430-54448449 | Msa0688470:intron | 35.0% | |
| CTACATGTTCTTCCTCAAAA+TGG | + | chr4_4:54448460-54448479 | None:intergenic | 35.0% | |
| CTTGAACCCCCTTAAATATA+AGG | - | chr4_4:54448653-54448672 | Msa0688470:CDS | 35.0% | |
| ! | TGCAAGCCTTATATTTAAGG+GGG | + | chr4_4:54448662-54448681 | None:intergenic | 35.0% |
| ! | GTGCAAGCCTTATATTTAAG+GGG | + | chr4_4:54448663-54448682 | None:intergenic | 35.0% |
| ! | GGTGCAAGCCTTATATTTAA+GGG | + | chr4_4:54448664-54448683 | None:intergenic | 35.0% |
| ! | TGGTGCAAGCCTTATATTTA+AGG | + | chr4_4:54448665-54448684 | None:intergenic | 35.0% |
| GTTCAATGTGTGCAACTTAA+CGG | + | chr4_4:54448706-54448725 | None:intergenic | 35.0% | |
| AACATTGCTGTCCAATAACA+TGG | - | chr4_4:54448723-54448742 | Msa0688470:CDS | 35.0% | |
| TGTACATTACGCCATGTTAT+TGG | + | chr4_4:54448737-54448756 | None:intergenic | 35.0% | |
| AAACGTGTGTAAGTTGCAGA+GGG | - | chr4_4:54442451-54442470 | Msa0688470:three_prime_UTR | 40.0% | |
| TACAACTCATTGCAGGTGTA+TGG | - | chr4_4:54442605-54442624 | Msa0688470:three_prime_UTR | 40.0% | |
| AGGTGTATGGAAGATAAGAG+TGG | - | chr4_4:54442618-54442637 | Msa0688470:three_prime_UTR | 40.0% | |
| TCCTTATAAGTCTCCTTCGA+TGG | - | chr4_4:54442657-54442676 | Msa0688470:three_prime_UTR | 40.0% | |
| CCTTATAAGTCTCCTTCGAT+GGG | - | chr4_4:54442658-54442677 | Msa0688470:three_prime_UTR | 40.0% | |
| ATTGCATACCTGACCTAATC+AGG | - | chr4_4:54443013-54443032 | Msa0688470:intron | 40.0% | |
| ! | GTTTAAGTGAGTTGAGCTTC+GGG | - | chr4_4:54443072-54443091 | Msa0688470:intron | 40.0% |
| ! | TTTAAGTGAGTTGAGCTTCG+GGG | - | chr4_4:54443073-54443092 | Msa0688470:intron | 40.0% |
| AAAACTCTTTAGGTGTCCCT+TGG | + | chr4_4:54443289-54443308 | None:intergenic | 40.0% | |
| AAAACTCTTTAGGTGTCCCT+TGG | + | chr4_4:54443289-54443308 | None:intergenic | 40.0% | |
| CAAGCGTAGGAGAATGTATT+GGG | + | chr4_4:54443641-54443660 | None:intergenic | 40.0% | |
| TCAAGCGTAGGAGAATGTAT+TGG | + | chr4_4:54443642-54443661 | None:intergenic | 40.0% | |
| AAATCTAACCTGGTTAGGTC+AGG | + | chr4_4:54443675-54443694 | None:intergenic | 40.0% | |
| AACCAAATGTCGCAATTAGG+CGG | + | chr4_4:54443775-54443794 | None:intergenic | 40.0% | |
| !! | CAACACAATGAAAGTGTTGG+AGG | + | chr4_4:54443810-54443829 | None:intergenic | 40.0% |
| CTCCAACACTTTCATTGTGT+TGG | - | chr4_4:54443808-54443827 | Msa0688470:intron | 40.0% | |
| ATTGTGTTGGATGTGAATGG+TGG | - | chr4_4:54443821-54443840 | Msa0688470:intron | 40.0% | |
| TTGTGTTGGATGTGAATGGT+GGG | - | chr4_4:54443822-54443841 | Msa0688470:intron | 40.0% | |
| TATAGTCCCACATTGCTTAG+AGG | - | chr4_4:54443846-54443865 | Msa0688470:intron | 40.0% | |
| GCTTATTAAACCGGGTTGTA+AGG | + | chr4_4:54443912-54443931 | None:intergenic | 40.0% | |
| ! | TGACTTGACCTAATCGATTC+GGG | - | chr4_4:54444347-54444366 | Msa0688470:intron | 40.0% |
| !! | CTAATCGATTCGGGCTTTAT+CGG | - | chr4_4:54444356-54444375 | Msa0688470:intron | 40.0% |
| TTTATCGGACCGGACTAAAA+TGG | - | chr4_4:54444371-54444390 | Msa0688470:intron | 40.0% | |
| TTATCGGACCGGACTAAAAT+GGG | - | chr4_4:54444372-54444391 | Msa0688470:intron | 40.0% | |
| TTGTTGGGAGTTCAAAGAAG+GGG | - | chr4_4:54444485-54444504 | Msa0688470:intron | 40.0% | |
| ATTAAACCCTCCTCTTCTCT+CGG | + | chr4_4:54444536-54444555 | None:intergenic | 40.0% | |
| TCATTGCAGTGTGAAGAGAT+AGG | + | chr4_4:54444746-54444765 | None:intergenic | 40.0% | |
| ATGTATTAGTTGCCAGCTAG+AGG | - | chr4_4:54444806-54444825 | Msa0688470:three_prime_UTR | 40.0% | |
| AGTAGTGAGTCACAAGTTCA+TGG | - | chr4_4:54445070-54445089 | Msa0688470:three_prime_UTR | 40.0% | |
| AGTCACAAGTTCATGGCAAA+CGG | - | chr4_4:54445077-54445096 | Msa0688470:three_prime_UTR | 40.0% | |
| TTCTCCCTTGTGAAGGAAAA+AGG | - | chr4_4:54445315-54445334 | Msa0688470:three_prime_UTR | 40.0% | |
| ! | TATGCTGCAGTATCGAGAAA+AGG | - | chr4_4:54445342-54445361 | Msa0688470:three_prime_UTR | 40.0% |
| ! | ATGCTGCAGTATCGAGAAAA+GGG | - | chr4_4:54445343-54445362 | Msa0688470:three_prime_UTR | 40.0% |
| ! | AGTATCGAGAAAAGGGTTGT+GGG | - | chr4_4:54445350-54445369 | Msa0688470:three_prime_UTR | 40.0% |
| GACTCTGTGATAGTTGATCT+GGG | - | chr4_4:54445372-54445391 | Msa0688470:three_prime_UTR | 40.0% | |
| TGTGATAGTTGATCTGGGTT+TGG | - | chr4_4:54445377-54445396 | Msa0688470:three_prime_UTR | 40.0% | |
| ! | GGGTTTGGACCTTAATGTTT+TGG | - | chr4_4:54445392-54445411 | Msa0688470:three_prime_UTR | 40.0% |
| ATCTGAGTGATTTCGAAGGT+TGG | - | chr4_4:54445442-54445461 | Msa0688470:three_prime_UTR | 40.0% | |
| GATTTGAGAATGAGAGGCTT+TGG | + | chr4_4:54445554-54445573 | None:intergenic | 40.0% | |
| TTGGTTAACCACAAGAGTGA+TGG | - | chr4_4:54445636-54445655 | Msa0688470:three_prime_UTR | 40.0% | |
| !!! | CACCCTCACATTTGTTGTTT+TGG | + | chr4_4:54445683-54445702 | None:intergenic | 40.0% |
| GACAATGAAAAATTCGGCAC+TGG | - | chr4_4:54445735-54445754 | Msa0688470:three_prime_UTR | 40.0% | |
| AATACACCCATTTGATCCTG+AGG | - | chr4_4:54445854-54445873 | Msa0688470:intron | 40.0% | |
| AAGCATGCAGAACCAAACAA+TGG | - | chr4_4:54445942-54445961 | Msa0688470:intron | 40.0% | |
| AGCATGCAGAACCAAACAAT+GGG | - | chr4_4:54445943-54445962 | Msa0688470:intron | 40.0% | |
| ! | CAGTTAGCAAGCTGAGATTT+TGG | + | chr4_4:54446197-54446216 | None:intergenic | 40.0% |
| TGTAACTGCACTATTGAGCT+TGG | - | chr4_4:54446356-54446375 | Msa0688470:intron | 40.0% | |
| !! | GCATGATTTGCATTTTGCTG+TGG | - | chr4_4:54446467-54446486 | Msa0688470:intron | 40.0% |
| ACACAATTCACATTCTGCTG+CGG | - | chr4_4:54446528-54446547 | Msa0688470:intron | 40.0% | |
| AGTGTACTAGAGCTCTTCAA+CGG | + | chr4_4:54446686-54446705 | None:intergenic | 40.0% | |
| GCTCTAGTACACTATGTGTT+TGG | - | chr4_4:54446693-54446712 | Msa0688470:intron | 40.0% | |
| TGTAGATGTTGTGGAGAAAC+AGG | - | chr4_4:54446844-54446863 | Msa0688470:intron | 40.0% | |
| TAAACGGAAGAAGGTGAAGT+TGG | - | chr4_4:54446986-54447005 | Msa0688470:intron | 40.0% | |
| !!! | CTTTTTTGCACCTCTTGTGA+TGG | - | chr4_4:54447063-54447082 | Msa0688470:intron | 40.0% |
| ! | CCTTTGCAAAAGTGACCTTT+TGG | + | chr4_4:54447302-54447321 | None:intergenic | 40.0% |
| !!! | CCAAAAGGTCACTTTTGCAA+AGG | - | chr4_4:54447299-54447318 | Msa0688470:intron | 40.0% |
| TTGCAAAGGGGCTAAAACTT+AGG | - | chr4_4:54447313-54447332 | Msa0688470:intron | 40.0% | |
| TGCAAAGGGGCTAAAACTTA+GGG | - | chr4_4:54447314-54447333 | Msa0688470:intron | 40.0% | |
| CGCAACATTGACAAAGTTAG+GGG | - | chr4_4:54447374-54447393 | Msa0688470:intron | 40.0% | |
| GCAACATTGACAAAGTTAGG+GGG | - | chr4_4:54447375-54447394 | Msa0688470:intron | 40.0% | |
| AGAGTCATAAGCAGTGCATA+AGG | + | chr4_4:54447425-54447444 | None:intergenic | 40.0% | |
| TTATGCACTGCTTATGACTC+TGG | - | chr4_4:54447424-54447443 | Msa0688470:intron | 40.0% | |
| ! | TCTGAAACTGTCTCCTTTAC+AGG | - | chr4_4:54447703-54447722 | Msa0688470:intron | 40.0% |
| GGTTTGACAGAATCATGCAA+AGG | + | chr4_4:54447740-54447759 | None:intergenic | 40.0% | |
| !! | CGTGAAAAGCTTGTTTCTGT+AGG | - | chr4_4:54447812-54447831 | Msa0688470:CDS | 40.0% |
| TAAACTACACCAGTCCATTG+CGG | + | chr4_4:54447860-54447879 | None:intergenic | 40.0% | |
| GACTGGTGTAGTTTATGAGA+GGG | - | chr4_4:54447865-54447884 | Msa0688470:intron | 40.0% | |
| TTTATGAGAGGGACTCCAAA+TGG | - | chr4_4:54447876-54447895 | Msa0688470:intron | 40.0% | |
| TACTTGTGTGCCTAACCATT+TGG | + | chr4_4:54447894-54447913 | None:intergenic | 40.0% | |
| AATGGTTAGGCACACAAGTA+TGG | - | chr4_4:54447894-54447913 | Msa0688470:intron | 40.0% | |
| AAGTGTAGCTGCAATGTTCA+AGG | - | chr4_4:54447980-54447999 | Msa0688470:intron | 40.0% | |
| GACTTCATATTGCTGCAAAC+AGG | - | chr4_4:54448020-54448039 | Msa0688470:intron | 40.0% | |
| ! | TGGGTTCTGCATTTTACCAT+TGG | - | chr4_4:54448062-54448081 | Msa0688470:intron | 40.0% |
| ! | GGGTTCTGCATTTTACCATT+GGG | - | chr4_4:54448063-54448082 | Msa0688470:intron | 40.0% |
| ! | GGTTCTGCATTTTACCATTG+GGG | - | chr4_4:54448064-54448083 | Msa0688470:intron | 40.0% |
| AGAGATTTAAGGATGCGATG+GGG | - | chr4_4:54448140-54448159 | Msa0688470:intron | 40.0% | |
| GACTATGAGGAAGTTGAGTT+TGG | - | chr4_4:54448319-54448338 | Msa0688470:intron | 40.0% | |
| ! | GAGTTTGGATCATTTGGTGA+TGG | - | chr4_4:54448334-54448353 | Msa0688470:CDS | 40.0% |
| !! | GGATCATTTGGTGATGGTTT+CGG | - | chr4_4:54448340-54448359 | Msa0688470:CDS | 40.0% |
| !! | GATCATTTGGTGATGGTTTC+GGG | - | chr4_4:54448341-54448360 | Msa0688470:CDS | 40.0% |
| TCCATGAAATCCATAGATGG+AGG | + | chr4_4:54448382-54448401 | None:intergenic | 40.0% | |
| CACTCCATGAAATCCATAGA+TGG | + | chr4_4:54448385-54448404 | None:intergenic | 40.0% | |
| !! | TGTAAATCAATGGGTTGAGG+GGG | + | chr4_4:54448609-54448628 | None:intergenic | 40.0% |
| !! | GTGTAAATCAATGGGTTGAG+GGG | + | chr4_4:54448610-54448629 | None:intergenic | 40.0% |
| !! | GGTGTAAATCAATGGGTTGA+GGG | + | chr4_4:54448611-54448630 | None:intergenic | 40.0% |
| !! | AGGTGTAAATCAATGGGTTG+AGG | + | chr4_4:54448612-54448631 | None:intergenic | 40.0% |
| TCTCTCGCTTCTCTTTCGTT+GGG | + | chr4_4:54441858-54441877 | None:intergenic | 45.0% | |
| TTCTCTCGCTTCTCTTTCGT+TGG | + | chr4_4:54441859-54441878 | None:intergenic | 45.0% | |
| GCTTCGTCAAGTACATGTCT+CGG | + | chr4_4:54441901-54441920 | None:intergenic | 45.0% | |
| GAAACGTGTGTAAGTTGCAG+AGG | - | chr4_4:54442450-54442469 | Msa0688470:three_prime_UTR | 45.0% | |
| TTTAGAGGGCGAACTGAAGT+GGG | - | chr4_4:54442547-54442566 | Msa0688470:three_prime_UTR | 45.0% | |
| CCCATCGAAGGAGACTTATA+AGG | + | chr4_4:54442661-54442680 | None:intergenic | 45.0% | |
| GAATTTCAGGGTTCAAACCC+TGG | - | chr4_4:54442765-54442784 | Msa0688470:intron | 45.0% | |
| AGTAGTCATGCTCGTTTCCA+GGG | + | chr4_4:54442785-54442804 | None:intergenic | 45.0% | |
| TAGTAGTCATGCTCGTTTCC+AGG | + | chr4_4:54442786-54442805 | None:intergenic | 45.0% | |
| AAGTCTGACCTGATTAGGTC+AGG | + | chr4_4:54443024-54443043 | None:intergenic | 45.0% | |
| ! | TTAAGTGAGTTGAGCTTCGG+GGG | - | chr4_4:54443074-54443093 | Msa0688470:intron | 45.0% |
| GGTATGCGATAATCAAGCGT+AGG | + | chr4_4:54443654-54443673 | None:intergenic | 45.0% | |
| TGGAAATCCCGCTTTCATTG+CGG | - | chr4_4:54443748-54443767 | Msa0688470:intron | 45.0% | |
| GGCAACCAAATGTCGCAATT+AGG | + | chr4_4:54443778-54443797 | None:intergenic | 45.0% | |
| !! | AAGTGTTGGAGGTTGCAAGA+AGG | + | chr4_4:54443799-54443818 | None:intergenic | 45.0% |
| TCCCACATTGCTTAGAGGTA+TGG | - | chr4_4:54443851-54443870 | Msa0688470:intron | 45.0% | |
| GCCATACCTCTAAGCAATGT+GGG | + | chr4_4:54443855-54443874 | None:intergenic | 45.0% | |
| TGCCATACCTCTAAGCAATG+TGG | + | chr4_4:54443856-54443875 | None:intergenic | 45.0% | |
| AAAAATTAACGGGGGGGCTT+TGG | - | chr4_4:54444070-54444089 | Msa0688470:intron | 45.0% | |
| AAAATTAACGGGGGGGCTTT+GGG | - | chr4_4:54444071-54444090 | Msa0688470:intron | 45.0% | |
| CGATAAAGCCCGAATCGATT+AGG | + | chr4_4:54444358-54444377 | None:intergenic | 45.0% | |
| ACAAAATACCCCGAGAGAAG+AGG | - | chr4_4:54444523-54444542 | Msa0688470:three_prime_UTR | 45.0% | |
| TTAAACCCTCCTCTTCTCTC+GGG | + | chr4_4:54444535-54444554 | None:intergenic | 45.0% | |
| GTCACAAGTTCATGGCAAAC+GGG | - | chr4_4:54445078-54445097 | Msa0688470:three_prime_UTR | 45.0% | |
| AAATGGCGATTGTCTTGTCG+AGG | - | chr4_4:54445148-54445167 | Msa0688470:three_prime_UTR | 45.0% | |
| TGAGGATCAGCACTATCAAC+AGG | + | chr4_4:54445176-54445195 | None:intergenic | 45.0% | |
| CCTTCACAAGGGAGAAAAGT+TGG | + | chr4_4:54445311-54445330 | None:intergenic | 45.0% | |
| ! | CCAACTTTTCTCCCTTGTGA+AGG | - | chr4_4:54445308-54445327 | Msa0688470:three_prime_UTR | 45.0% |
| TCCCTTGTGAAGGAAAAAGG+AGG | - | chr4_4:54445318-54445337 | Msa0688470:three_prime_UTR | 45.0% | |
| ! | CCCTCCTTTTTCCTTCACAA+GGG | + | chr4_4:54445322-54445341 | None:intergenic | 45.0% |
| CCCTTGTGAAGGAAAAAGGA+GGG | - | chr4_4:54445319-54445338 | Msa0688470:three_prime_UTR | 45.0% | |
| ! | ACCCTCCTTTTTCCTTCACA+AGG | + | chr4_4:54445323-54445342 | None:intergenic | 45.0% |
| ! | CAGTATCGAGAAAAGGGTTG+TGG | - | chr4_4:54445349-54445368 | Msa0688470:three_prime_UTR | 45.0% |
| GGACTCTGTGATAGTTGATC+TGG | - | chr4_4:54445371-54445390 | Msa0688470:three_prime_UTR | 45.0% | |
| !! | AAAATTCGGCACTGGTGTCA+AGG | - | chr4_4:54445743-54445762 | Msa0688470:three_prime_UTR | 45.0% |
| ! | GATCCTGAGGAGTATAAAGG+AGG | - | chr4_4:54445867-54445886 | Msa0688470:intron | 45.0% |
| ! | TGAGGAGTATAAAGGAGGCT+GGG | - | chr4_4:54445872-54445891 | Msa0688470:intron | 45.0% |
| GAAGGCAAGAGATGTTCTGT+CGG | - | chr4_4:54445914-54445933 | Msa0688470:intron | 45.0% | |
| !! | CTCAGCTTGCTAACTGCTAT+AGG | - | chr4_4:54446201-54446220 | Msa0688470:intron | 45.0% |
| ! | GCACAACCTTGAAATGGACT+GGG | - | chr4_4:54446490-54446509 | Msa0688470:intron | 45.0% |
| CACAATTCACATTCTGCTGC+GGG | - | chr4_4:54446529-54446548 | Msa0688470:intron | 45.0% | |
| GTGCAGCCTTAAAACGGATA+GGG | - | chr4_4:54446551-54446570 | Msa0688470:intron | 45.0% | |
| GGAGATGAATCAAGAAGAGG+TGG | - | chr4_4:54446959-54446978 | Msa0688470:intron | 45.0% | |
| GGTGGAAGATAAACGGAAGA+AGG | - | chr4_4:54446977-54446996 | Msa0688470:intron | 45.0% | |
| ! | GAAGAAGGTGAAGTTGGTTC+TGG | - | chr4_4:54446992-54447011 | Msa0688470:intron | 45.0% |
| !! | GGCTGAGTTTGAGGCTATTT+TGG | - | chr4_4:54447039-54447058 | Msa0688470:intron | 45.0% |
| !! | CCTTTTGGCCAATTTTGACC+AGG | + | chr4_4:54447287-54447306 | None:intergenic | 45.0% |
| CCTGGTCAAAATTGGCCAAA+AGG | - | chr4_4:54447284-54447303 | Msa0688470:intron | 45.0% | |
| GCAAAGGGGCTAAAACTTAG+GGG | - | chr4_4:54447315-54447334 | Msa0688470:intron | 45.0% | |
| CAAAGGGGCTAAAACTTAGG+GGG | - | chr4_4:54447316-54447335 | Msa0688470:intron | 45.0% | |
| GGATGCATCTTCACCTGTAA+AGG | + | chr4_4:54447719-54447738 | None:intergenic | 45.0% | |
| CGAGAATCATCATCCCAAGA+TGG | + | chr4_4:54447794-54447813 | None:intergenic | 45.0% | |
| AAACTACACCAGTCCATTGC+GGG | + | chr4_4:54447859-54447878 | None:intergenic | 45.0% | |
| ! | GGACTGGTGTAGTTTATGAG+AGG | - | chr4_4:54447864-54447883 | Msa0688470:intron | 45.0% |
| GAAACAGATCTTGTTGGGAG+AGG | - | chr4_4:54447947-54447966 | Msa0688470:intron | 45.0% | |
| GCGAAGAAGTTTCACTTCGA+TGG | - | chr4_4:54448101-54448120 | Msa0688470:intron | 45.0% | |
| CTATCAGAATCGAGTGACTC+AGG | - | chr4_4:54448282-54448301 | Msa0688470:intron | 45.0% | |
| AGCTATCAAGCCTCCATCTA+TGG | - | chr4_4:54448369-54448388 | Msa0688470:CDS | 45.0% | |
| GCCTCCATCTATGGATTTCA+TGG | - | chr4_4:54448378-54448397 | Msa0688470:CDS | 45.0% | |
| !! | CAGTGTGGTAAGCCATTTTG+AGG | - | chr4_4:54448445-54448464 | Msa0688470:intron | 45.0% |
| TTTATTGCGTGCTCCTTCCT+TGG | - | chr4_4:54448528-54448547 | Msa0688470:intron | 45.0% | |
| !! | ATATATTTGATAAAAATTAA+CGG | - | chr4_4:54444059-54444078 | Msa0688470:intron | 5.0% |
| !!! | TTATGTATATTAATTATTTT+AGG | + | chr4_4:54446171-54446190 | None:intergenic | 5.0% |
| !!! | AAATTTTCATTTTTTTTATT+AGG | - | chr4_4:54447341-54447360 | Msa0688470:intron | 5.0% |
| !!! | AATTTTCATTTTTTTTATTA+GGG | - | chr4_4:54447342-54447361 | Msa0688470:intron | 5.0% |
| GCACAGTAGATGTGAGCTAC+TGG | + | chr4_4:54441809-54441828 | None:intergenic | 50.0% | |
| ACATGTCTCGGCGTTTGCTT+GGG | + | chr4_4:54441889-54441908 | None:intergenic | 50.0% | |
| TACATGTCTCGGCGTTTGCT+TGG | + | chr4_4:54441890-54441909 | None:intergenic | 50.0% | |
| ! | CTTTAGAGGGCGAACTGAAG+TGG | - | chr4_4:54442546-54442565 | Msa0688470:three_prime_UTR | 50.0% |
| CAAGTACCTTTCTTGGCGCT+CGG | + | chr4_4:54443132-54443151 | None:intergenic | 50.0% | |
| TTGCAAATCACCCTCCGAAG+AGG | - | chr4_4:54443149-54443168 | Msa0688470:intron | 50.0% | |
| AGTTGAACCCACGACATTGC+AGG | - | chr4_4:54443191-54443210 | Msa0688470:intron | 50.0% | |
| TGACTCACCTGCAATGTCGT+GGG | + | chr4_4:54443201-54443220 | None:intergenic | 50.0% | |
| TTGACTCACCTGCAATGTCG+TGG | + | chr4_4:54443202-54443221 | None:intergenic | 50.0% | |
| GAAGTTCAGGGTTCAAACGC+TGG | - | chr4_4:54443389-54443408 | Msa0688470:intron | 50.0% | |
| ATCGCATACCTGACCTAACC+AGG | - | chr4_4:54443664-54443683 | Msa0688470:intron | 50.0% | |
| GGAAATCCCGCTTTCATTGC+GGG | - | chr4_4:54443749-54443768 | Msa0688470:intron | 50.0% | |
| GAAGCTCTCACCTTACAACC+CGG | - | chr4_4:54443899-54443918 | Msa0688470:intron | 50.0% | |
| AAATACCCCGAGAGAAGAGG+AGG | - | chr4_4:54444526-54444545 | Msa0688470:three_prime_UTR | 50.0% | |
| AATACCCCGAGAGAAGAGGA+GGG | - | chr4_4:54444527-54444546 | Msa0688470:three_prime_UTR | 50.0% | |
| TAAACCCTCCTCTTCTCTCG+GGG | + | chr4_4:54444534-54444553 | None:intergenic | 50.0% | |
| TAGTTGCCAGCTAGAGGTCT+TGG | - | chr4_4:54444812-54444831 | Msa0688470:three_prime_UTR | 50.0% | |
| GATTGACCAAGACCTCTAGC+TGG | + | chr4_4:54444821-54444840 | None:intergenic | 50.0% | |
| CAGCCTCCTTTATACTCCTC+AGG | + | chr4_4:54445873-54445892 | None:intergenic | 50.0% | |
| ! | CTGAGGAGTATAAAGGAGGC+TGG | - | chr4_4:54445871-54445890 | Msa0688470:intron | 50.0% |
| CTGTGGGCACAACCTTGAAA+TGG | - | chr4_4:54446484-54446503 | Msa0688470:intron | 50.0% | |
| GGCACAACCTTGAAATGGAC+TGG | - | chr4_4:54446489-54446508 | Msa0688470:intron | 50.0% | |
| GGTGCAGCCTTAAAACGGAT+AGG | - | chr4_4:54446550-54446569 | Msa0688470:intron | 50.0% | |
| GAGACTCATGCTGTTGTTGC+TGG | - | chr4_4:54447018-54447037 | Msa0688470:intron | 50.0% | |
| ! | GTTGTTGCTGGCTGAGTTTG+AGG | - | chr4_4:54447030-54447049 | Msa0688470:intron | 50.0% |
| ACCTCTTGTGATGGCTGTCA+CGG | - | chr4_4:54447072-54447091 | Msa0688470:intron | 50.0% | |
| !! | GGCGTTGACCTGGTCAAAAT+TGG | - | chr4_4:54447276-54447295 | Msa0688470:intron | 50.0% |
| TGTAGGTCGTCGTTTCCAAG+CGG | - | chr4_4:54447829-54447848 | Msa0688470:CDS | 50.0% | |
| GAGAGGGACTCCAAATGGTT+AGG | - | chr4_4:54447881-54447900 | Msa0688470:intron | 50.0% | |
| GACTGTTGACAGCGACTATG+AGG | - | chr4_4:54448306-54448325 | Msa0688470:intron | 50.0% | |
| !! | CATTTGGTGATGGTTTCGGG+AGG | - | chr4_4:54448344-54448363 | Msa0688470:CDS | 50.0% |
| GGTTACAGATGAGAGAGAGC+TGG | + | chr4_4:54448685-54448704 | None:intergenic | 50.0% | |
| CATGTCTCGGCGTTTGCTTG+GGG | + | chr4_4:54441888-54441907 | None:intergenic | 55.0% | |
| CAACAGCTGCTGCTGACCTA+TGG | - | chr4_4:54442303-54442322 | Msa0688470:three_prime_UTR | 55.0% | |
| AGCATGTGGACCTCTTCGGA+GGG | + | chr4_4:54443162-54443181 | None:intergenic | 55.0% | |
| TGCCAGCATGTGGACCTCTT+CGG | + | chr4_4:54443166-54443185 | None:intergenic | 55.0% | |
| AGAGGTCCACATGCTGGCAA+TGG | - | chr4_4:54443167-54443186 | Msa0688470:intron | 55.0% | |
| GAGGTCCACATGCTGGCAAT+GGG | - | chr4_4:54443168-54443187 | Msa0688470:intron | 55.0% | |
| CAACTCCCATTGCCAGCATG+TGG | + | chr4_4:54443176-54443195 | None:intergenic | 55.0% | |
| GGCCGCCTAATTGCGACATT+TGG | - | chr4_4:54443770-54443789 | Msa0688470:intron | 55.0% | |
| ! | CGATTCGGGCTTTATCGGAC+CGG | - | chr4_4:54444361-54444380 | Msa0688470:intron | 55.0% |
| ! | GGGTTGTTAATTGGTGGGCC+AGG | + | chr4_4:54444398-54444417 | None:intergenic | 55.0% |
| TGACTGACACCGAGCATCAC+CGG | + | chr4_4:54445273-54445292 | None:intergenic | 55.0% | |
| CTGCGGGTGCAGCCTTAAAA+CGG | - | chr4_4:54446545-54446564 | Msa0688470:intron | 55.0% | |
| ! | GCACGGCCCTATCCGTTTTA+AGG | + | chr4_4:54446560-54446579 | None:intergenic | 55.0% |
| CATTTGGCCGCCGTTGAATG+TGG | - | chr4_4:54446916-54446935 | Msa0688470:intron | 55.0% | |
| GCTAGCACCGCCACATTCAA+CGG | + | chr4_4:54446929-54446948 | None:intergenic | 55.0% | |
| ! | GTTGAATGTGGCGGTGCTAG+CGG | - | chr4_4:54446928-54446947 | Msa0688470:intron | 55.0% |
| ACCGTGACAGCCATCACAAG+AGG | + | chr4_4:54447076-54447095 | None:intergenic | 55.0% | |
| TCTTGTGATGGCTGTCACGG+TGG | - | chr4_4:54447075-54447094 | Msa0688470:intron | 55.0% | |
| ! | ACAGACGTGGCATGCCACTT+AGG | - | chr4_4:54447255-54447274 | Msa0688470:intron | 55.0% |
| !! | ATGCCACTTAGGCGTTGACC+TGG | - | chr4_4:54447266-54447285 | Msa0688470:intron | 55.0% |
| TGACCAGGTCAACGCCTAAG+TGG | + | chr4_4:54447272-54447291 | None:intergenic | 55.0% | |
| TCTGCAGAAACGACGGCATC+TGG | + | chr4_4:54447761-54447780 | None:intergenic | 55.0% | |
| CTTGTTGGGAGAGGAAGACG+AGG | - | chr4_4:54447956-54447975 | Msa0688470:intron | 55.0% | |
| ATTGCGTGCTCCTTCCTTGG+AGG | - | chr4_4:54448531-54448550 | Msa0688470:intron | 55.0% | |
| TGCATCCCCTGGATACAAGC+TGG | + | chr4_4:54448580-54448599 | None:intergenic | 55.0% | |
| CAGCATGTGGACCTCTTCGG+AGG | + | chr4_4:54443163-54443182 | None:intergenic | 60.0% | |
| CTCCGAAGAGGTCCACATGC+TGG | - | chr4_4:54443161-54443180 | Msa0688470:intron | 60.0% | |
| TAGGCGGCCCGCAATGAAAG+CGG | + | chr4_4:54443759-54443778 | None:intergenic | 60.0% | |
| GGACCGGACTAAAATGGGCC+TGG | - | chr4_4:54444377-54444396 | Msa0688470:intron | 60.0% | |
| !! | GGGCCAGGCCCATTTTAGTC+CGG | + | chr4_4:54444383-54444402 | None:intergenic | 60.0% |
| AGGCAATGTGAGGCCTGAGC+CGG | - | chr4_4:54445251-54445270 | Msa0688470:three_prime_UTR | 60.0% | |
| GGGCGACCCAGTCCATTTCA+AGG | + | chr4_4:54446499-54446518 | None:intergenic | 60.0% | |
| ACGGATAGGGCCGTGCATAC+TGG | - | chr4_4:54446564-54446583 | Msa0688470:intron | 60.0% | |
| TTGGCCGCCGTTGAATGTGG+CGG | - | chr4_4:54446919-54446938 | Msa0688470:intron | 60.0% | |
| AGCACCGCCACATTCAACGG+CGG | + | chr4_4:54446926-54446945 | None:intergenic | 60.0% | |
| TCCAAGCGGAAGTCCCGCAA+TGG | - | chr4_4:54447843-54447862 | Msa0688470:intron | 60.0% | |
| TCCATTGCGGGACTTCCGCT+TGG | + | chr4_4:54447847-54447866 | None:intergenic | 60.0% | |
| GCGGAGCCAGCTTGTATCCA+GGG | - | chr4_4:54448571-54448590 | Msa0688470:CDS | 60.0% | |
| CGGAGCCAGCTTGTATCCAG+GGG | - | chr4_4:54448572-54448591 | Msa0688470:CDS | 60.0% | |
| TTGAGCTTCGGGGGCTCACC+AGG | - | chr4_4:54443083-54443102 | Msa0688470:intron | 65.0% | |
| TGAGCTTCGGGGGCTCACCA+GGG | - | chr4_4:54443084-54443103 | Msa0688470:intron | 65.0% | |
| AGGCGGCCCGCAATGAAAGC+GGG | + | chr4_4:54443758-54443777 | None:intergenic | 65.0% | |
| AGGCCTGAGCCGGTGATGCT+CGG | - | chr4_4:54445261-54445280 | Msa0688470:three_prime_UTR | 65.0% | |
| !! | ACACCGAGCATCACCGGCTC+AGG | + | chr4_4:54445267-54445286 | None:intergenic | 65.0% |
| ! | GAATGTGGCGGTGCTAGCGG+CGG | - | chr4_4:54446931-54446950 | Msa0688470:intron | 65.0% |
| GCGGAAGTCCCGCAATGGAC+TGG | - | chr4_4:54447848-54447867 | Msa0688470:intron | 65.0% | |
| GTTGGCAGCGCCTCCAAGGA+AGG | + | chr4_4:54448544-54448563 | None:intergenic | 65.0% | |
| ! | TACAAGCTGGCTCCGCCCCT+GGG | + | chr4_4:54448567-54448586 | None:intergenic | 65.0% |
| ! | ATACAAGCTGGCTCCGCCCC+TGG | + | chr4_4:54448568-54448587 | None:intergenic | 65.0% |
| GGCGGAGCCAGCTTGTATCC+AGG | - | chr4_4:54448570-54448589 | Msa0688470:CDS | 65.0% | |
| TTCGGGGGCTCACCAGGGTC+AGG | - | chr4_4:54443089-54443108 | Msa0688470:intron | 70.0% | |
| TCGGGGGCTCACCAGGGTCA+GGG | - | chr4_4:54443090-54443109 | Msa0688470:intron | 70.0% | |
| CTTGAGGCCTGCCCTGACCC+TGG | + | chr4_4:54443104-54443123 | None:intergenic | 70.0% | |
| CAGGGTCAGGGCAGGCCTCA+AGG | - | chr4_4:54443102-54443121 | Msa0688470:intron | 70.0% | |
| TTGGCGCTCGGCGAGCCTTG+AGG | + | chr4_4:54443120-54443139 | None:intergenic | 70.0% | |
| GGCTCGCCGAGCGCCAAGAA+AGG | - | chr4_4:54443123-54443142 | Msa0688470:intron | 70.0% | |
| ! | GCGGTGCTAGCGGCGGTGTA+AGG | - | chr4_4:54446938-54446957 | Msa0688470:intron | 70.0% |
| ! | TGGGGTTGGCAGCGCCTCCA+AGG | + | chr4_4:54448548-54448567 | None:intergenic | 70.0% |
| !! | TTGGAGGCGCTGCCAACCCC+AGG | - | chr4_4:54448547-54448566 | Msa0688470:intron | 70.0% |
| !! | TGGAGGCGCTGCCAACCCCA+GGG | - | chr4_4:54448548-54448567 | Msa0688470:intron | 70.0% |
| ! | ACAAGCTGGCTCCGCCCCTG+GGG | + | chr4_4:54448566-54448585 | None:intergenic | 70.0% |
| GGGGGTTCAGCTGCATCCCC+TGG | + | chr4_4:54448591-54448610 | None:intergenic | 70.0% | |
| GGGCTCACCAGGGTCAGGGC+AGG | - | chr4_4:54443094-54443113 | Msa0688470:intron | 75.0% | |
| !! | GGAGGCGCTGCCAACCCCAG+GGG | - | chr4_4:54448549-54448568 | Msa0688470:intron | 75.0% |
| ! | GGCGCTGCCAACCCCAGGGG+CGG | - | chr4_4:54448552-54448571 | Msa0688470:intron | 80.0% |
| !! | GCTGGCTCCGCCCCTGGGGT+TGG | + | chr4_4:54448562-54448581 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 54441677 | 54448791 | 54441677 | ID=Msa0688470;Name=Msa0688470 |
| chr4_4 | mRNA | 54441677 | 54448791 | 54441677 | ID=Msa0688470-mRNA-1;Parent=Msa0688470;Name=Msa0688470-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|0.8|0.66|1|0.2|0.33|6|2551|141 |
| chr4_4 | exon | 54441677 | 54442743 | 54441677 | ID=Msa0688470-mRNA-1:exon:14283;Parent=Msa0688470-mRNA-1 |
| chr4_4 | exon | 54444491 | 54445814 | 54444491 | ID=Msa0688470-mRNA-1:exon:14282;Parent=Msa0688470-mRNA-1 |
| chr4_4 | exon | 54445949 | 54446124 | 54445949 | ID=Msa0688470-mRNA-1:exon:14281;Parent=Msa0688470-mRNA-1 |
| chr4_4 | exon | 54447749 | 54447848 | 54447749 | ID=Msa0688470-mRNA-1:exon:14280;Parent=Msa0688470-mRNA-1 |
| chr4_4 | exon | 54448326 | 54448405 | 54448326 | ID=Msa0688470-mRNA-1:exon:14279;Parent=Msa0688470-mRNA-1 |
| chr4_4 | exon | 54448562 | 54448791 | 54448562 | ID=Msa0688470-mRNA-1:exon:14278;Parent=Msa0688470-mRNA-1 |
| chr4_4 | CDS | 54448562 | 54448791 | 54448562 | ID=Msa0688470-mRNA-1:cds;Parent=Msa0688470-mRNA-1 |
| chr4_4 | CDS | 54448326 | 54448405 | 54448326 | ID=Msa0688470-mRNA-1:cds;Parent=Msa0688470-mRNA-1 |
| chr4_4 | CDS | 54447749 | 54447848 | 54447749 | ID=Msa0688470-mRNA-1:cds;Parent=Msa0688470-mRNA-1 |
| chr4_4 | CDS | 54446109 | 54446124 | 54446109 | ID=Msa0688470-mRNA-1:cds;Parent=Msa0688470-mRNA-1 |
| chr4_4 | three_prime_UTR | 54445949 | 54446108 | 54445949 | ID=Msa0688470-mRNA-1:three_prime_utr;Parent=Msa0688470-mRNA-1 |
| chr4_4 | three_prime_UTR | 54444491 | 54445814 | 54444491 | ID=Msa0688470-mRNA-1:three_prime_utr;Parent=Msa0688470-mRNA-1 |
| chr4_4 | three_prime_UTR | 54441677 | 54442743 | 54441677 | ID=Msa0688470-mRNA-1:three_prime_utr;Parent=Msa0688470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
