AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1306440

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1306440 MtrunA17_Chr8g0387131 76.829 82 12 2 1 77 1 80 2.40e-38 127
Msa1306440 MtrunA17_Chr8g0348701 71.951 82 16 2 1 77 1 80 2.11e-36 122
Msa1306440 MtrunA17_Chr8g0387151 78.082 73 9 2 10 77 1 71 1.79e-33 112
Msa1306440 MtrunA17_Chr4g0059291 68.293 82 19 2 1 77 1 80 2.29e-33 115
Msa1306440 MtrunA17_Chr6g0479281 61.224 98 17 3 1 88 1 87 9.06e-32 108
Msa1306440 MtrunA17_Chr8g0387171 60.000 85 16 2 18 97 6 77 7.90e-28 97.8
Msa1306440 MtrunA17_Chr1g0186291 61.765 68 18 1 18 77 1 68 1.04e-25 94.4
Msa1306440 MtrunA17_Chr1g0186191 68.889 45 9 2 18 57 1 45 3.96e-14 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1306440 AT1G63800.1 73.171 82 15 2 1 77 1 80 3.43e-36 122
Msa1306440 AT5G41340.1 68.293 82 19 2 1 77 1 80 8.15e-34 116
Msa1306440 AT1G63800.2 73.846 65 12 1 18 77 1 65 7.72e-30 106
Msa1306440 AT2G46030.5 61.728 81 24 2 1 76 1 79 2.97e-29 105
Msa1306440 AT2G46030.1 61.728 81 24 2 1 76 1 79 2.97e-29 105
Msa1306440 AT2G46030.3 61.728 81 24 2 1 76 73 151 1.28e-28 105
Msa1306440 AT2G46030.4 61.194 67 21 1 15 76 16 82 7.72e-24 91.3
Msa1306440 AT2G46030.2 61.194 67 21 1 15 76 16 82 7.72e-24 91.3
Msa1306440 AT5G41340.2 75.000 36 9 0 42 77 10 45 6.46e-15 67.4

Find 216 sgRNAs with CRISPR-Local

Find 507 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGACTCTTCCAAATTATTTA+AGG 0.101946 8_4:+1405316 Msa1306440:three_prime_UTR
TACCATCACCGTTAAAATTT+TGG 0.110531 8_4:-1402256 None:intergenic
TGAAAATTATTGAGAATTTA+TGG 0.124128 8_4:-1401239 None:intergenic
CACCCTCACATTTGTTGTTT+TGG 0.143855 8_4:-1402232 None:intergenic
TGGTGCAAGCCTTATATTTA+AGG 0.166386 8_4:-1405214 None:intergenic
TTCATTCTCGCAAACGTAAA+AGG 0.167837 8_4:+1402342 Msa1306440:three_prime_UTR
CCATTGGGGATTTGATAAAA+TGG 0.180493 8_4:+1404630 Msa1306440:three_prime_UTR
GATCATTTGGTGATGGTTTC+GGG 0.181909 8_4:+1404893 Msa1306440:three_prime_UTR
TGTCTTCCTTTGAAAGTATA+TGG 0.190078 8_4:-1404758 None:intergenic
TGTACATTACGCCATGTTAT+TGG 0.207667 8_4:-1405286 None:intergenic
TTCTCCCTTGTGAAGGAAAA+AGG 0.214256 8_4:+1401867 Msa1306440:three_prime_UTR
ACATATATCTGTTGTTAAAA+TGG 0.222083 8_4:+1405054 Msa1306440:three_prime_UTR
CTTCCTTCTTAAAACTCTTT+AGG 0.222790 8_4:-1399921 None:intergenic
AACGAACATGACTACTAATT+TGG 0.224028 8_4:+1399964 Msa1306440:exon
TTTATCGGACCGGACTAAAA+TGG 0.225462 8_4:+1400922 Msa1306440:three_prime_UTR
CAAGAGTGATGGTAATTTAT+TGG 0.225995 8_4:+1402199 Msa1306440:three_prime_UTR
CCTTTATAATGCTAAATACT+AGG 0.237593 8_4:-1400967 None:intergenic
GGATCATTTGGTGATGGTTT+CGG 0.238389 8_4:+1404892 Msa1306440:three_prime_UTR
AATGTCAGCCTTAAATAATT+TGG 0.246602 8_4:-1405324 None:intergenic
CCTTCACCAGTATATGTTAA+TGG 0.251035 8_4:+1401464 Msa1306440:three_prime_UTR
CTACATGTTCTTCCTCAAAA+TGG 0.257376 8_4:-1405009 None:intergenic
TGATGAAGAAAAGAGATTTA+AGG 0.278264 8_4:+1404681 Msa1306440:three_prime_UTR
ACAAGATCTGTTTCAGTTGT+AGG 0.281094 8_4:-1404490 None:intergenic
CTAATCGATTCGGGCTTTAT+CGG 0.283608 8_4:+1400907 Msa1306440:three_prime_UTR
GGGTTTGGACCTTAATGTTT+TGG 0.293428 8_4:+1401944 Msa1306440:three_prime_UTR
CATAATTAAGCACATTGATT+TGG 0.300440 8_4:+1402169 Msa1306440:three_prime_UTR
GACCAAACTGAAGTTTGAAT+TGG 0.302122 8_4:+1404594 Msa1306440:three_prime_UTR
GGACTCTGTGATAGTTGATC+TGG 0.306502 8_4:+1401923 Msa1306440:three_prime_UTR
TAAATACTAGGGTTGTTAAT+TGG 0.318097 8_4:-1400955 None:intergenic
GAATTTATGGTGGTACTAAC+TGG 0.324037 8_4:-1401226 None:intergenic
TGATTTGCAAGTACCTTTCT+TGG 0.329744 8_4:-1399687 None:intergenic
TGAAAGAAACACAAAATAAT+AGG 0.331249 8_4:-1405181 None:intergenic
CCTAGTATTTAGCATTATAA+AGG 0.331565 8_4:+1400967 Msa1306440:three_prime_UTR
GCCTCCATCTATGGATTTCA+TGG 0.339718 8_4:+1404930 Msa1306440:three_prime_UTR
AGCTATCAAGCCTCCATCTA+TGG 0.341794 8_4:+1404921 Msa1306440:three_prime_UTR
GTTAGAAATTTACTATGTTT+AGG 0.342465 8_4:-1398686 None:intergenic
GATTTGAGAATGAGAGGCTT+TGG 0.343884 8_4:-1402103 None:intergenic
TACAAGCTGGCTCCGCCCCT+GGG 0.344350 8_4:-1405116 None:intergenic
CAGATTTGATTAAGCCATCT+TGG 0.345613 8_4:+1404329 Msa1306440:three_prime_UTR
TACATGTCTCGGCGTTTGCT+TGG 0.353722 8_4:-1398439 None:intergenic
ACATGTCTCGGCGTTTGCTT+GGG 0.359959 8_4:-1398438 None:intergenic
TCACTGAAGCCAAAACATTA+AGG 0.361658 8_4:-1401953 None:intergenic
ATACAAGCTGGCTCCGCCCC+TGG 0.364838 8_4:-1405117 None:intergenic
TACAACTCATTGCAGGTGTA+TGG 0.365129 8_4:+1399156 Msa1306440:intron
CATTATCGGAAATGATAAAC+TGG 0.368928 8_4:+1402369 Msa1306440:three_prime_UTR
CAAGAGGAGAATTGTATTAG+AGG 0.371040 8_4:+1401783 Msa1306440:three_prime_UTR
GACTATGAGGAAGTTGAGTT+TGG 0.371247 8_4:+1404871 Msa1306440:three_prime_UTR
ACTCACATTTCATCAACATT+AGG 0.371368 8_4:-1399254 None:intergenic
AATGGTTAGGCACACAAGTA+TGG 0.372435 8_4:+1404446 Msa1306440:three_prime_UTR
TGACTTGACCTAATCGATTC+GGG 0.372470 8_4:+1400898 Msa1306440:three_prime_UTR
GTTCAATGTGTGCAACTTAA+CGG 0.374703 8_4:-1405255 None:intergenic
TTTATTGCGTGCTCCTTCCT+TGG 0.375724 8_4:+1405080 Msa1306440:three_prime_UTR
GACATACCATTAACATATAC+TGG 0.380697 8_4:-1401470 None:intergenic
TACTTGTGTGCCTAACCATT+TGG 0.380699 8_4:-1404443 None:intergenic
CTCTAATACAATTCTCCTCT+TGG 0.380788 8_4:-1401782 None:intergenic
CCCATCGAAGGAGACTTATA+AGG 0.386734 8_4:-1399209 None:intergenic
TTTACTAAATTTCATGCAAA+TGG 0.388491 8_4:+1401683 Msa1306440:three_prime_UTR
CGATAAAGCCCGAATCGATT+AGG 0.389195 8_4:-1400906 None:intergenic
GAAGTTGAGTTTGGATCATT+TGG 0.390652 8_4:+1404880 Msa1306440:three_prime_UTR
TTGGAGGCGCTGCCAACCCC+AGG 0.394610 8_4:+1405099 Msa1306440:three_prime_UTR
TTTGATGATGACCCATTGTT+TGG 0.394625 8_4:-1402506 None:intergenic
TTGACTTGACCTAATCGATT+CGG 0.400483 8_4:+1400897 Msa1306440:three_prime_UTR
GGCGGAGCCAGCTTGTATCC+AGG 0.400777 8_4:+1405122 Msa1306440:three_prime_UTR
TCTGCAGAAACGACGGCATC+TGG 0.402636 8_4:-1404310 None:intergenic
ACCCAATTCAAACTTCAGTT+TGG 0.406126 8_4:-1404596 None:intergenic
TGTGATAGTTGATCTGGGTT+TGG 0.407331 8_4:+1401929 Msa1306440:three_prime_UTR
AAATAATAGGTGTAAATCAA+TGG 0.407841 8_4:-1405168 None:intergenic
TTATACTCCTCAGGATCAAA+TGG 0.411508 8_4:-1402413 None:intergenic
CATTGGGGATTTGATAAAAT+GGG 0.415280 8_4:+1404631 Msa1306440:three_prime_UTR
CCTTCACAAGGGAGAAAAGT+TGG 0.420577 8_4:-1401860 None:intergenic
AAAGAAGGGGAATGAAATAA+AGG 0.421487 8_4:+1401049 Msa1306440:three_prime_UTR
AAACTACACCAGTCCATTGC+GGG 0.425596 8_4:-1404408 None:intergenic
ACGTAAAAGGGAATCATTAT+CGG 0.428409 8_4:+1402355 Msa1306440:three_prime_UTR
GGTGCAAGCCTTATATTTAA+GGG 0.429749 8_4:-1405213 None:intergenic
TGAGGATCAGCACTATCAAC+AGG 0.430312 8_4:-1401725 None:intergenic
TCCTTATAAGTCTCCTTCGA+TGG 0.435071 8_4:+1399208 Msa1306440:CDS
GCTGGCTCCGCCCCTGGGGT+TGG 0.435495 8_4:-1405111 None:intergenic
TCATTGCAGTGTGAAGAGAT+AGG 0.436154 8_4:-1401294 None:intergenic
TTCCTTTGAAAGTATATGGA+TGG 0.441539 8_4:-1404754 None:intergenic
CACTCCATGAAATCCATAGA+TGG 0.442549 8_4:-1404934 None:intergenic
TTTGATCCTGAGGAGTATAA+AGG 0.444102 8_4:+1402416 Msa1306440:three_prime_UTR
ACCAAACTGAAGTTTGAATT+GGG 0.446444 8_4:+1404595 Msa1306440:three_prime_UTR
AGATTTGATTAAGCCATCTT+GGG 0.447011 8_4:+1404330 Msa1306440:three_prime_UTR
AGTTGAACCCACGACATTGC+AGG 0.450458 8_4:+1399742 Msa1306440:CDS
GACTTCATATTGCTGCAAAC+AGG 0.450773 8_4:+1404572 Msa1306440:three_prime_UTR
ACACCGAGCATCACCGGCTC+AGG 0.456593 8_4:-1401816 None:intergenic
CAGCCTCCTTTATACTCCTC+AGG 0.457410 8_4:-1402422 None:intergenic
TTATCGGACCGGACTAAAAT+GGG 0.458596 8_4:+1400923 Msa1306440:three_prime_UTR
AGTCACAAGTTCATGGCAAA+CGG 0.460752 8_4:+1401629 Msa1306440:three_prime_UTR
CAACTGAAACAGATCTTGTT+GGG 0.465328 8_4:+1404494 Msa1306440:three_prime_UTR
CCTCTCATTCTCAAATCTAA+AGG 0.469105 8_4:+1402109 Msa1306440:three_prime_UTR
CTTTATAATGCTAAATACTA+GGG 0.469959 8_4:-1400966 None:intergenic
GGGTTGTTAATTGGTGGGCC+AGG 0.470782 8_4:-1400946 None:intergenic
ACAACTGAAACAGATCTTGT+TGG 0.471432 8_4:+1404493 Msa1306440:three_prime_UTR
ATTGCGTGCTCCTTCCTTGG+AGG 0.472945 8_4:+1405083 Msa1306440:three_prime_UTR
AATAATAGGTGTAAATCAAT+GGG 0.473255 8_4:-1405167 None:intergenic
GGTGTAAATCAATGGGTTGA+GGG 0.476630 8_4:-1405160 None:intergenic
TCATTCTCGCAAACGTAAAA+GGG 0.477895 8_4:+1402343 Msa1306440:three_prime_UTR
AGTAGTGAGTCACAAGTTCA+TGG 0.478834 8_4:+1401622 Msa1306440:three_prime_UTR
CTGAGGAGTATAAAGGAGGC+TGG 0.479138 8_4:+1402423 Msa1306440:three_prime_UTR
TGCCAGCATGTGGACCTCTT+CGG 0.479346 8_4:-1399714 None:intergenic
CGTGAAAAGCTTGTTTCTGT+AGG 0.481232 8_4:+1404364 Msa1306440:three_prime_UTR
GCGGAAGTCCCGCAATGGAC+TGG 0.484951 8_4:+1404400 Msa1306440:three_prime_UTR
CAGTATCGAGAAAAGGGTTG+TGG 0.485102 8_4:+1401901 Msa1306440:three_prime_UTR
TGGGGTTGGCAGCGCCTCCA+AGG 0.488786 8_4:-1405097 None:intergenic
TCCATTGCGGGACTTCCGCT+TGG 0.488954 8_4:-1404396 None:intergenic
CCTTATAAGTCTCCTTCGAT+GGG 0.489289 8_4:+1399209 Msa1306440:CDS
TAGTTGCCAGCTAGAGGTCT+TGG 0.491651 8_4:+1401363 Msa1306440:three_prime_UTR
GACTCTGTGATAGTTGATCT+GGG 0.491869 8_4:+1401924 Msa1306440:three_prime_UTR
AGGCCTGAGCCGGTGATGCT+CGG 0.501839 8_4:+1401813 Msa1306440:three_prime_UTR
GTCACAAGTTCATGGCAAAC+GGG 0.502162 8_4:+1401630 Msa1306440:three_prime_UTR
TATGCTGCAGTATCGAGAAA+AGG 0.502280 8_4:+1401894 Msa1306440:three_prime_UTR
ATGTGCTTAATTATGTTACA+TGG 0.503262 8_4:-1402161 None:intergenic
AGGTGTAAATCAATGGGTTG+AGG 0.504606 8_4:-1405161 None:intergenic
GACTTATAAGGATAAACATC+AGG 0.505538 8_4:-1399197 None:intergenic
CAGGGTCAGGGCAGGCCTCA+AGG 0.505904 8_4:+1399653 Msa1306440:intron
TTTATGAGAGGGACTCCAAA+TGG 0.506102 8_4:+1404428 Msa1306440:three_prime_UTR
GAAGTTCAGGGTTCAAACGC+TGG 0.506244 8_4:+1399940 Msa1306440:CDS
GAGAGGGACTCCAAATGGTT+AGG 0.506452 8_4:+1404433 Msa1306440:three_prime_UTR
GGCGCTGCCAACCCCAGGGG+CGG 0.508973 8_4:+1405104 Msa1306440:three_prime_UTR
TCCTTTGAAAGTATATGGAT+GGG 0.510514 8_4:-1404753 None:intergenic
AGAGGTCCACATGCTGGCAA+TGG 0.510760 8_4:+1399718 Msa1306440:CDS
AAGAGATTTAAGGATGCGAT+GGG 0.512153 8_4:+1404691 Msa1306440:three_prime_UTR
GACTGTTGACAGCGACTATG+AGG 0.512319 8_4:+1404858 Msa1306440:three_prime_UTR
CTCCGAAGAGGTCCACATGC+TGG 0.515248 8_4:+1399712 Msa1306440:CDS
GAGGTCCACATGCTGGCAAT+GGG 0.516119 8_4:+1399719 Msa1306440:CDS
GCGAAGAAGTTTCACTTCGA+TGG 0.516591 8_4:+1404653 Msa1306440:three_prime_UTR
AAGTGTAGCTGCAATGTTCA+AGG 0.516681 8_4:+1404532 Msa1306440:three_prime_UTR
GAGTTTGGATCATTTGGTGA+TGG 0.518699 8_4:+1404886 Msa1306440:three_prime_UTR
GCGGAGCCAGCTTGTATCCA+GGG 0.519414 8_4:+1405123 Msa1306440:three_prime_UTR
TGACTGACACCGAGCATCAC+CGG 0.520466 8_4:-1401822 None:intergenic
ATCTGAGTGATTTCGAAGGT+TGG 0.523296 8_4:+1401994 Msa1306440:three_prime_UTR
TACTAGGGTTGTTAATTGGT+GGG 0.524405 8_4:-1400951 None:intergenic
CAAGTACCTTTCTTGGCGCT+CGG 0.524541 8_4:-1399680 None:intergenic
ATACTAGGGTTGTTAATTGG+TGG 0.527020 8_4:-1400952 None:intergenic
CTATCAGAATCGAGTGACTC+AGG 0.527715 8_4:+1404834 Msa1306440:three_prime_UTR
GTTGGCAGCGCCTCCAAGGA+AGG 0.531784 8_4:-1405093 None:intergenic
ATAAATTACCATCACTCTTG+TGG 0.532243 8_4:-1402196 None:intergenic
TTGGCGCTCGGCGAGCCTTG+AGG 0.534027 8_4:-1399668 None:intergenic
TTGACTCACCTGCAATGTCG+TGG 0.537718 8_4:-1399750 None:intergenic
GGCTCGCCGAGCGCCAAGAA+AGG 0.538459 8_4:+1399674 Msa1306440:CDS
TGGAGGCGCTGCCAACCCCA+GGG 0.539733 8_4:+1405100 Msa1306440:three_prime_UTR
AGCATGCAGAACCAAACAAT+GGG 0.540970 8_4:+1402495 Msa1306440:three_prime_UTR
AAAGAGATTTAAGGATGCGA+TGG 0.541017 8_4:+1404690 Msa1306440:three_prime_UTR
CCTTTAGATTTGAGAATGAG+AGG 0.541549 8_4:-1402109 None:intergenic
AGTATCGAGAAAAGGGTTGT+GGG 0.542959 8_4:+1401902 Msa1306440:three_prime_UTR
ACCCATCCATATACTTTCAA+AGG 0.543482 8_4:+1404752 Msa1306440:three_prime_UTR
GTGTAAATCAATGGGTTGAG+GGG 0.544115 8_4:-1405159 None:intergenic
GGACCGGACTAAAATGGGCC+TGG 0.545467 8_4:+1400928 Msa1306440:three_prime_UTR
ATGCTGCAGTATCGAGAAAA+GGG 0.546828 8_4:+1401895 Msa1306440:three_prime_UTR
TATACTCCTCAGGATCAAAT+GGG 0.549641 8_4:-1402412 None:intergenic
ATGTATTAGTTGCCAGCTAG+AGG 0.550525 8_4:+1401357 Msa1306440:three_prime_UTR
TGCATCCCCTGGATACAAGC+TGG 0.551479 8_4:-1405129 None:intergenic
AAACAATGGGTCATCATCAA+AGG 0.556398 8_4:+1402508 Msa1306440:three_prime_UTR
CATATACAAAAGTACAAGCT+AGG 0.558557 8_4:+1401540 Msa1306440:three_prime_UTR
CGATTCGGGCTTTATCGGAC+CGG 0.560470 8_4:+1400912 Msa1306440:three_prime_UTR
AGGCAATGTGAGGCCTGAGC+CGG 0.560985 8_4:+1401803 Msa1306440:three_prime_UTR
AATTGATAAAAGAGTATGAA+GGG 0.568202 8_4:-1401420 None:intergenic
AAAATTCGGCACTGGTGTCA+AGG 0.572645 8_4:+1402295 Msa1306440:three_prime_UTR
CAGCATGTGGACCTCTTCGG+AGG 0.573637 8_4:-1399711 None:intergenic
GTGCAAGCCTTATATTTAAG+GGG 0.574747 8_4:-1405212 None:intergenic
TGAGGAGTATAAAGGAGGCT+GGG 0.575783 8_4:+1402424 Msa1306440:three_prime_UTR
CAACTCCCATTGCCAGCATG+TGG 0.576751 8_4:-1399724 None:intergenic
TGACTCACCTGCAATGTCGT+GGG 0.581096 8_4:-1399749 None:intergenic
AGCATGTGGACCTCTTCGGA+GGG 0.581761 8_4:-1399710 None:intergenic
TTTAGTTTCAAGGCGATCAA+GGG 0.581796 8_4:-1401657 None:intergenic
TTGGTTAACCACAAGAGTGA+TGG 0.581825 8_4:+1402188 Msa1306440:three_prime_UTR
CATGTCTCGGCGTTTGCTTG+GGG 0.583044 8_4:-1398437 None:intergenic
ACAAGCTGGCTCCGCCCCTG+GGG 0.583483 8_4:-1405115 None:intergenic
AGAATGAAATTCAAAAGAAG+CGG 0.584345 8_4:-1402327 None:intergenic
CGAGAATCATCATCCCAAGA+TGG 0.586176 8_4:-1404343 None:intergenic
GATTGACCAAGACCTCTAGC+TGG 0.588589 8_4:-1401369 None:intergenic
AACCAAAACAACAAATGTGA+GGG 0.590681 8_4:+1402230 Msa1306440:three_prime_UTR
ACATTTCATCAACATTAGGA+TGG 0.594673 8_4:-1399250 None:intergenic
CCATTAACATATACTGGTGA+AGG 0.594769 8_4:-1401464 None:intergenic
AAATTGATAAAAGAGTATGA+AGG 0.596513 8_4:-1401421 None:intergenic
TTTGCAGCATTGAAATTCAA+CGG 0.596905 8_4:+1401198 Msa1306440:intron
TCCAAGCGGAAGTCCCGCAA+TGG 0.597080 8_4:+1404395 Msa1306440:three_prime_UTR
TTTGTTGGGAGTTCAAAGAA+GGG 0.597963 8_4:+1401035 Msa1306440:three_prime_UTR
AAAGTGGAGATGATCAATGA+TGG 0.599096 8_4:+1398632 Msa1306440:CDS
GAATTTGATCACAAAACTAG+AGG 0.600009 8_4:-1401581 None:intergenic
AACATTGCTGTCCAATAACA+TGG 0.600667 8_4:+1405275 Msa1306440:three_prime_UTR
AAACCAAAACAACAAATGTG+AGG 0.612820 8_4:+1402229 Msa1306440:three_prime_UTR
TTGTTGGGAGTTCAAAGAAG+GGG 0.613896 8_4:+1401036 Msa1306440:three_prime_UTR
AAGCATGCAGAACCAAACAA+TGG 0.615428 8_4:+1402494 Msa1306440:three_prime_UTR
GAAACAGATCTTGTTGGGAG+AGG 0.616533 8_4:+1404499 Msa1306440:three_prime_UTR
TGCAAGCCTTATATTTAAGG+GGG 0.617619 8_4:-1405211 None:intergenic
GACTGGTGTAGTTTATGAGA+GGG 0.625917 8_4:+1404417 Msa1306440:three_prime_UTR
TGTGACAACAAGGAAATGAA+AGG 0.626119 8_4:-1401319 None:intergenic
TTGTTAACAAAACCCATCGA+AGG 0.626194 8_4:-1399221 None:intergenic
GCTTCGTCAAGTACATGTCT+CGG 0.626335 8_4:-1398450 None:intergenic
TTGCAAATCACCCTCCGAAG+AGG 0.629278 8_4:+1399700 Msa1306440:CDS
GGACTGGTGTAGTTTATGAG+AGG 0.629860 8_4:+1404416 Msa1306440:three_prime_UTR
GGTTACAGATGAGAGAGAGC+TGG 0.633661 8_4:-1405234 None:intergenic
CTTGTTGGGAGAGGAAGACG+AGG 0.636192 8_4:+1404508 Msa1306440:three_prime_UTR
TGTAAATCAATGGGTTGAGG+GGG 0.640499 8_4:-1405158 None:intergenic
AATCAAATCTGCAGAAACGA+CGG 0.640914 8_4:-1404317 None:intergenic
GAAGGCAAGAGATGTTCTGT+CGG 0.647872 8_4:+1402466 Msa1306440:three_prime_UTR
AATACACCCATTTGATCCTG+AGG 0.649632 8_4:+1402406 Msa1306440:three_prime_UTR
TGTAGGTCGTCGTTTCCAAG+CGG 0.650107 8_4:+1404381 Msa1306440:three_prime_UTR
CGGAGCCAGCTTGTATCCAG+GGG 0.652552 8_4:+1405124 Msa1306440:three_prime_UTR
TAAACTACACCAGTCCATTG+CGG 0.653393 8_4:-1404409 None:intergenic
CATTTGGTGATGGTTTCGGG+AGG 0.653419 8_4:+1404896 Msa1306440:three_prime_UTR
AAATGGCGATTGTCTTGTCG+AGG 0.655256 8_4:+1401700 Msa1306440:three_prime_UTR
GATCCTGAGGAGTATAAAGG+AGG 0.656179 8_4:+1402419 Msa1306440:three_prime_UTR
AAGGAAGACAAGAAAAGACA+TGG 0.658301 8_4:+1404771 Msa1306440:three_prime_UTR
AAATATCTGAGTGATTTCGA+AGG 0.658560 8_4:+1401990 Msa1306440:three_prime_UTR
GTTGATAACTGATTACAAAG+TGG 0.659668 8_4:+1398616 Msa1306440:CDS
GGTTTGACAGAATCATGCAA+AGG 0.665715 8_4:-1404289 None:intergenic
GGAGGCGCTGCCAACCCCAG+GGG 0.667660 8_4:+1405101 Msa1306440:three_prime_UTR
TCCATGAAATCCATAGATGG+AGG 0.670812 8_4:-1404931 None:intergenic
AGAGATTTAAGGATGCGATG+GGG 0.691782 8_4:+1404692 Msa1306440:three_prime_UTR
AAATTATTGAGAATTTATGG+TGG 0.691884 8_4:-1401236 None:intergenic
ATTGTATTAGAGGCAATGTG+AGG 0.692266 8_4:+1401793 Msa1306440:three_prime_UTR
AGGTGTATGGAAGATAAGAG+TGG 0.712929 8_4:+1399169 Msa1306440:intron
TTTGAGTAGACAAAACAGTG+TGG 0.748066 8_4:+1404982 Msa1306440:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTAATAATGAATTTCA+GGG + chr8_4:1399304-1399323 Msa1306440:intron 10.0%
!!! AAGATTTTCTAATTTTAAAA+TGG - chr8_4:1399450-1399469 None:intergenic 10.0%
!! TATATTTGATAAAAATTAAC+GGG + chr8_4:1400611-1400630 Msa1306440:intron 10.0%
!!! AAGATTTTGTAATTTTAAAA+CGG - chr8_4:1400713-1400732 None:intergenic 10.0%
!! AAAAAATAAAAATCAAACTT+GGG - chr8_4:1400863-1400882 None:intergenic 10.0%
!! AAAAAAATAAAAATCAAACT+TGG - chr8_4:1400864-1400883 None:intergenic 10.0%
!! CTAATACATAAAAAAAAAAA+TGG - chr8_4:1401346-1401365 None:intergenic 10.0%
!! TTAATATAATAAAGATATCA+GGG + chr8_4:1402787-1402806 Msa1306440:intron 10.0%
!!! TTGCATTTTTATTTTTTTAA+AGG + chr8_4:1403164-1403183 Msa1306440:intron 10.0%
!! AAATAAAAAAAAAATAGAAC+AGG - chr8_4:1403711-1403730 None:intergenic 10.0%
!!! ATTTTCATTTTTTTTATTAG+GGG + chr8_4:1403895-1403914 Msa1306440:intron 10.0%
!! AAAAAGATTACAAATTTAGA+GGG - chr8_4:1398539-1398558 None:intergenic 15.0%
!! AAAAAAGATTACAAATTTAG+AGG - chr8_4:1398540-1398559 None:intergenic 15.0%
!!! ATTTGTAATCTTTTTGTAAT+TGG + chr8_4:1398578-1398597 Msa1306440:intron 15.0%
!!! TTTGTAATCTTTTTGTAATT+GGG + chr8_4:1398579-1398598 Msa1306440:intron 15.0%
!! CAAAAATAAACAAAAACTAA+AGG - chr8_4:1398984-1399003 None:intergenic 15.0%
!!! GATTTTTAATAATGAATTTC+AGG + chr8_4:1399303-1399322 Msa1306440:intron 15.0%
!!! ATTTAAAATGACAATAAACA+AGG - chr8_4:1399393-1399412 None:intergenic 15.0%
!!! ATTTTTATATTGTCTATACA+AGG + chr8_4:1399482-1399501 Msa1306440:intron 15.0%
!!! TTTTTTTTATTGTTTTCCAA+GGG + chr8_4:1399821-1399840 Msa1306440:intron 15.0%
!! TAAATTTCTTAAAACTCTTT+AGG - chr8_4:1399850-1399869 None:intergenic 15.0%
!!! TTTTTTTTATTGTTTTCCAA+GGG + chr8_4:1399821-1399840 Msa1306440:intron 15.0%
!!! TTTTGAATAACTTTTTTGAT+AGG - chr8_4:1399999-1400018 None:intergenic 15.0%
!!! CAAGTCTTATATATTTTAAA+AGG - chr8_4:1400121-1400140 None:intergenic 15.0%
!!! CAAAGATTAATATATTTTGT+TGG + chr8_4:1400279-1400298 Msa1306440:intron 15.0%
!!! TATAATTTAGAATTTGAGTT+GGG - chr8_4:1400496-1400515 None:intergenic 15.0%
!! ATATTTGATAAAAATTAACG+GGG + chr8_4:1400612-1400631 Msa1306440:intron 15.0%
!! AAAAATAAAAATCAAACTTG+GGG - chr8_4:1400862-1400881 None:intergenic 15.0%
!!! TTTATTTTTTTTATCATCGT+AGG + chr8_4:1400873-1400892 Msa1306440:intron 15.0%
!! ATATTAGGTTAAAATTCAAA+AGG - chr8_4:1401161-1401180 None:intergenic 15.0%
!! TGAAAATTATTGAGAATTTA+TGG - chr8_4:1401242-1401261 None:intergenic 15.0%
!!! ATGTTTTGTCAATTTTTTTT+CGG + chr8_4:1401755-1401774 Msa1306440:three_prime_UTR 15.0%
!! GTTAATATAATAAAGATATC+AGG + chr8_4:1402786-1402805 Msa1306440:intron 15.0%
!! TAATTTAGAAAATGATTATG+TGG + chr8_4:1403754-1403773 Msa1306440:intron 15.0%
!!! TTTTCATTTTTTTTATTAGG+GGG + chr8_4:1403896-1403915 Msa1306440:intron 15.0%
!! GTTATTACATAAAATACATA+GGG - chr8_4:1404009-1404028 None:intergenic 15.0%
!! AAAAGATTACAAATTTAGAG+GGG - chr8_4:1398538-1398557 None:intergenic 20.0%
!! GTTAGAAATTTACTATGTTT+AGG - chr8_4:1398689-1398708 None:intergenic 20.0%
!!! AGTTGTTCATTATTTTCTAA+GGG + chr8_4:1399274-1399293 Msa1306440:intron 20.0%
!!! GTTTTTTTTATTGTTTTCCA+AGG + chr8_4:1399820-1399839 Msa1306440:intron 20.0%
!!! GTTTTTTTTATTGTTTTCCA+AGG + chr8_4:1399820-1399839 Msa1306440:intron 20.0%
!!! ACGATTTTGTAATTTTAAAC+TGG - chr8_4:1400074-1400093 None:intergenic 20.0%
!! AATAATGATAAAATCTAACC+TGG - chr8_4:1400236-1400255 None:intergenic 20.0%
!!! GTATAATTTAGAATTTGAGT+TGG - chr8_4:1400497-1400516 None:intergenic 20.0%
!! TATTTGATAAAAATTAACGG+GGG + chr8_4:1400613-1400632 Msa1306440:intron 20.0%
!! TATTTCCTTAATCAAACTTA+GGG - chr8_4:1400825-1400844 None:intergenic 20.0%
!! TTTGATTAAGGAAATAGATT+CGG + chr8_4:1400829-1400848 Msa1306440:intron 20.0%
!! AAAATAAAAATCAAACTTGG+GGG - chr8_4:1400861-1400880 None:intergenic 20.0%
!! CTTTATAATGCTAAATACTA+GGG - chr8_4:1400969-1400988 None:intergenic 20.0%
!!! ATGTCAAAAAATCATTTTGT+TGG + chr8_4:1401020-1401039 Msa1306440:three_prime_UTR 20.0%
!!! TGTCAAAAAATCATTTTGTT+GGG + chr8_4:1401021-1401040 Msa1306440:three_prime_UTR 20.0%
!! AAATTATTGAGAATTTATGG+TGG - chr8_4:1401239-1401258 None:intergenic 20.0%
!! CTGCTAATAAAAATATCAAA+TGG + chr8_4:1401391-1401410 Msa1306440:three_prime_UTR 20.0%
!!! AATTGATAAAAGAGTATGAA+GGG - chr8_4:1401423-1401442 None:intergenic 20.0%
!!! AAATTGATAAAAGAGTATGA+AGG - chr8_4:1401424-1401443 None:intergenic 20.0%
!!! TAGTAAAAGTTTTAGTTTCA+AGG - chr8_4:1401670-1401689 None:intergenic 20.0%
!! TTTACTAAATTTCATGCAAA+TGG + chr8_4:1401683-1401702 Msa1306440:three_prime_UTR 20.0%
!! AAGAAAAGAGTTTCAAAAAT+TGG + chr8_4:1402033-1402052 Msa1306440:three_prime_UTR 20.0%
!!! TTATACATGATTTTACACAT+TGG + chr8_4:1402556-1402575 Msa1306440:intron 20.0%
!!! TGATTTTGAATACTTGATTT+CGG - chr8_4:1403200-1403219 None:intergenic 20.0%
!! AAAAAAAAAATAGAACAGGA+AGG - chr8_4:1403707-1403726 None:intergenic 20.0%
!! CGTTATTACATAAAATACAT+AGG - chr8_4:1404010-1404029 None:intergenic 20.0%
!! CTAAATTATCTATCAAACTA+TGG - chr8_4:1404099-1404118 None:intergenic 20.0%
!!! ACAAATAAAATTCCATCTTT+TGG - chr8_4:1404208-1404227 None:intergenic 20.0%
!!! GGAATTTTATTTGTATTATG+TGG + chr8_4:1404214-1404233 Msa1306440:intron 20.0%
!! ACATATATCTGTTGTTAAAA+TGG + chr8_4:1405054-1405073 Msa1306440:three_prime_UTR 20.0%
!! AATAATAGGTGTAAATCAAT+GGG - chr8_4:1405170-1405189 None:intergenic 20.0%
!! AAATAATAGGTGTAAATCAA+TGG - chr8_4:1405171-1405190 None:intergenic 20.0%
!! TGAAAGAAACACAAAATAAT+AGG - chr8_4:1405184-1405203 None:intergenic 20.0%
! AGGGAAAAAAATTGATACAA+GGG - chr8_4:1398714-1398733 None:intergenic 25.0%
! TAAAGGAAGAACATTTCAAT+TGG - chr8_4:1398786-1398805 None:intergenic 25.0%
! TATAGAATCTACAGTACTAA+AGG - chr8_4:1398803-1398822 None:intergenic 25.0%
! ATATGTTTCAATTCTATGTG+TGG + chr8_4:1398820-1398839 Msa1306440:intron 25.0%
!! GAGTTGTTCATTATTTTCTA+AGG + chr8_4:1399273-1399292 Msa1306440:intron 25.0%
!! TGTGTAGTTTTTATAAAGCT+TGG + chr8_4:1400427-1400446 Msa1306440:intron 25.0%
!! GTGTAGTTTTTATAAAGCTT+GGG + chr8_4:1400428-1400447 Msa1306440:intron 25.0%
! CAAATTCTAAATTATACACG+AGG + chr8_4:1400500-1400519 Msa1306440:intron 25.0%
! ATTTGATAAAAATTAACGGG+GGG + chr8_4:1400614-1400633 Msa1306440:intron 25.0%
!! ATTGTCTTTTACCATGTATA+AGG + chr8_4:1400753-1400772 Msa1306440:intron 25.0%
! ACATATGAAAACCTTATACA+TGG - chr8_4:1400767-1400786 None:intergenic 25.0%
! CTATTTCCTTAATCAAACTT+AGG - chr8_4:1400826-1400845 None:intergenic 25.0%
! AAATAAAAATCAAACTTGGG+GGG - chr8_4:1400860-1400879 None:intergenic 25.0%
! TAAATACTAGGGTTGTTAAT+TGG - chr8_4:1400958-1400977 None:intergenic 25.0%
! CCTTTATAATGCTAAATACT+AGG - chr8_4:1400970-1400989 None:intergenic 25.0%
! CCTAGTATTTAGCATTATAA+AGG + chr8_4:1400967-1400986 Msa1306440:three_prime_UTR 25.0%
! AAAAAAGTGAGCTGAATATT+AGG - chr8_4:1401176-1401195 None:intergenic 25.0%
!! TGTACTTTTGTATATGTTGA+TGG - chr8_4:1401536-1401555 None:intergenic 25.0%
!! TGACAAAACATAGATTTTTG+AGG - chr8_4:1401746-1401765 None:intergenic 25.0%
! AAGAGTTTCAAAAATTGGAA+TGG + chr8_4:1402038-1402057 Msa1306440:three_prime_UTR 25.0%
! ATGTGCTTAATTATGTTACA+TGG - chr8_4:1402164-1402183 None:intergenic 25.0%
!! CATAATTAAGCACATTGATT+TGG + chr8_4:1402169-1402188 Msa1306440:three_prime_UTR 25.0%
! AGAATGAAATTCAAAAGAAG+CGG - chr8_4:1402330-1402349 None:intergenic 25.0%
! GGTCAATAATAAAGATATCA+GGG + chr8_4:1402808-1402827 Msa1306440:intron 25.0%
! ATATAGATACACACATCAAT+TGG - chr8_4:1402989-1403008 None:intergenic 25.0%
! ATTGATGTGTGTATCTATAT+TGG + chr8_4:1402989-1403008 Msa1306440:intron 25.0%
! AAGCAAAGAGAAAAAAAAGA+CGG - chr8_4:1403273-1403292 None:intergenic 25.0%
! TAAATTAGTAATTACAGACG+TGG + chr8_4:1403794-1403813 Msa1306440:intron 25.0%
! ATTATCTATCAAACTATGGT+TGG - chr8_4:1404095-1404114 None:intergenic 25.0%
!!! GGTTTTGAATGATTTTTAAC+AGG - chr8_4:1404472-1404491 None:intergenic 25.0%
! TGATGAAGAAAAGAGATTTA+AGG + chr8_4:1404681-1404700 Msa1306440:three_prime_UTR 25.0%
! TGACTCTTCCAAATTATTTA+AGG + chr8_4:1405316-1405335 Msa1306440:three_prime_UTR 25.0%
!! GTTGATAACTGATTACAAAG+TGG + chr8_4:1398616-1398635 Msa1306440:CDS 30.0%
GAGGGAAAAAAATTGATACA+AGG - chr8_4:1398715-1398734 None:intergenic 30.0%
!!! AATTTTTTTCCCTCTTTGTG+TGG + chr8_4:1398721-1398740 Msa1306440:intron 30.0%
AATGAAATTCCACACAAAGA+GGG - chr8_4:1398733-1398752 None:intergenic 30.0%
AATTACAGGACATAATCCAT+AGG - chr8_4:1398875-1398894 None:intergenic 30.0%
! CTTTTATTACAACTCATTGC+AGG + chr8_4:1399149-1399168 Msa1306440:intron 30.0%
GACTTATAAGGATAAACATC+AGG - chr8_4:1399200-1399219 None:intergenic 30.0%
ACATTTCATCAACATTAGGA+TGG - chr8_4:1399253-1399272 None:intergenic 30.0%
ACTCACATTTCATCAACATT+AGG - chr8_4:1399257-1399276 None:intergenic 30.0%
!!! CAAGGAAGCATTTTTTTGAT+AGG - chr8_4:1399375-1399394 None:intergenic 30.0%
CAAACTTAGGCAAATGTATT+AGG - chr8_4:1399541-1399560 None:intergenic 30.0%
GGTATGCAATAATCAAACTT+AGG - chr8_4:1399554-1399573 None:intergenic 30.0%
AACTCACATTGCATAACATT+AGG - chr8_4:1399803-1399822 None:intergenic 30.0%
AACTCACATTGCATAACATT+AGG - chr8_4:1399803-1399822 None:intergenic 30.0%
!!! ACACCTAAAGAGTTTTAAGA+AGG + chr8_4:1399844-1399863 Msa1306440:intron 30.0%
CTTCCTTCTTAAAACTCTTT+AGG - chr8_4:1399924-1399943 None:intergenic 30.0%
!!! AGTTTTAAGAAGGAAGTTCA+GGG + chr8_4:1399928-1399947 Msa1306440:CDS 30.0%
AACGAACATGACTACTAATT+TGG + chr8_4:1399964-1399983 Msa1306440:exon 30.0%
TGATAAAATCTAACCTGGTT+AGG - chr8_4:1400231-1400250 None:intergenic 30.0%
TAACTCAAGCTTATTAAACC+GGG - chr8_4:1400471-1400490 None:intergenic 30.0%
CTAACTCAAGCTTATTAAAC+CGG - chr8_4:1400472-1400491 None:intergenic 30.0%
TTTGATAAAAATTAACGGGG+GGG + chr8_4:1400615-1400634 Msa1306440:intron 30.0%
CAAGATTTGAGAAATGACTT+TGG - chr8_4:1400660-1400679 None:intergenic 30.0%
AAAGAAGGGGAATGAAATAA+AGG + chr8_4:1401049-1401068 Msa1306440:three_prime_UTR 30.0%
ATCGCGAAAACAAATGATTA+AGG - chr8_4:1401127-1401146 None:intergenic 30.0%
! TTTGCAGCATTGAAATTCAA+CGG + chr8_4:1401198-1401217 Msa1306440:intron 30.0%
GACATACCATTAACATATAC+TGG - chr8_4:1401473-1401492 None:intergenic 30.0%
! CATATACAAAAGTACAAGCT+AGG + chr8_4:1401540-1401559 Msa1306440:three_prime_UTR 30.0%
GAATTTGATCACAAAACTAG+AGG - chr8_4:1401584-1401603 None:intergenic 30.0%
!!! TTTTTTTTCGGTTTACCAAG+AGG + chr8_4:1401767-1401786 Msa1306440:three_prime_UTR 30.0%
AAATATCTGAGTGATTTCGA+AGG + chr8_4:1401990-1402009 Msa1306440:three_prime_UTR 30.0%
AGTTTCAAAAATTGGAATGG+TGG + chr8_4:1402041-1402060 Msa1306440:three_prime_UTR 30.0%
GTTTCAAAAATTGGAATGGT+GGG + chr8_4:1402042-1402061 Msa1306440:three_prime_UTR 30.0%
! AGCTCTTTTTCTAGATCTAT+TGG - chr8_4:1402083-1402102 None:intergenic 30.0%
ATAAATTACCATCACTCTTG+TGG - chr8_4:1402199-1402218 None:intergenic 30.0%
CAAGAGTGATGGTAATTTAT+TGG + chr8_4:1402199-1402218 Msa1306440:three_prime_UTR 30.0%
AAACCAAAACAACAAATGTG+AGG + chr8_4:1402229-1402248 Msa1306440:three_prime_UTR 30.0%
AACCAAAACAACAAATGTGA+GGG + chr8_4:1402230-1402249 Msa1306440:three_prime_UTR 30.0%
! TACCATCACCGTTAAAATTT+TGG - chr8_4:1402259-1402278 None:intergenic 30.0%
GAGGATGACAATGAAAAATT+CGG + chr8_4:1402281-1402300 Msa1306440:three_prime_UTR 30.0%
ACGTAAAAGGGAATCATTAT+CGG + chr8_4:1402355-1402374 Msa1306440:three_prime_UTR 30.0%
CATTATCGGAAATGATAAAC+TGG + chr8_4:1402369-1402388 Msa1306440:three_prime_UTR 30.0%
GGGTCAATAATAAAGATATC+AGG + chr8_4:1402807-1402826 Msa1306440:intron 30.0%
AGTGCAGTTACAATTCTTAA+TGG - chr8_4:1402900-1402919 None:intergenic 30.0%
!! CACATCAATTGGTATTGATT+GGG - chr8_4:1402978-1402997 None:intergenic 30.0%
!! ACACATCAATTGGTATTGAT+TGG - chr8_4:1402979-1402998 None:intergenic 30.0%
GTGAATTGTGTGATTTAGTT+GGG - chr8_4:1403071-1403090 None:intergenic 30.0%
TGTGAATTGTGTGATTTAGT+TGG - chr8_4:1403072-1403091 None:intergenic 30.0%
TATTTACATACCAGTATGCA+CGG - chr8_4:1403129-1403148 None:intergenic 30.0%
GTATGTAAATATCCTGTCAA+TGG + chr8_4:1403138-1403157 Msa1306440:intron 30.0%
AAAATGCAAAAACCATTGAC+AGG - chr8_4:1403153-1403172 None:intergenic 30.0%
AGCAAAGAGAAAAAAAAGAC+GGG - chr8_4:1403272-1403291 None:intergenic 30.0%
TATGAATGCTACGTAAAAAC+AGG - chr8_4:1403302-1403321 None:intergenic 30.0%
! TTTTACGTAGCATTCATAGA+AGG + chr8_4:1403304-1403323 Msa1306440:intron 30.0%
AACTTCAGTAACAACAACAA+TGG - chr8_4:1403349-1403368 Msa1306450:CDS 30.0%
ATTTGATGTTGTAGATGTTG+TGG + chr8_4:1403387-1403406 Msa1306440:intron 30.0%
AGATTTGATTAAGCCATCTT+GGG + chr8_4:1404330-1404349 Msa1306440:three_prime_UTR 30.0%
ACCAAACTGAAGTTTGAATT+GGG + chr8_4:1404595-1404614 Msa1306440:three_prime_UTR 30.0%
CATTGGGGATTTGATAAAAT+GGG + chr8_4:1404631-1404650 Msa1306440:three_prime_UTR 30.0%
!!! AAAAAGACTTGTTTTGGGAA+GGG - chr8_4:1404726-1404745 None:intergenic 30.0%
!! GTTCCAAAAAGACTTGTTTT+GGG - chr8_4:1404731-1404750 None:intergenic 30.0%
!! TGTTCCAAAAAGACTTGTTT+TGG - chr8_4:1404732-1404751 None:intergenic 30.0%
! TCCTTTGAAAGTATATGGAT+GGG - chr8_4:1404756-1404775 None:intergenic 30.0%
! TTCCTTTGAAAGTATATGGA+TGG - chr8_4:1404757-1404776 None:intergenic 30.0%
! TGTCTTCCTTTGAAAGTATA+TGG - chr8_4:1404761-1404780 None:intergenic 30.0%
! TAATTGGGTTGTTGTGAATC+AGG + chr8_4:1398594-1398613 Msa1306440:intron 35.0%
AAAGTGGAGATGATCAATGA+TGG + chr8_4:1398632-1398651 Msa1306440:CDS 35.0%
CAATGAAATTCCACACAAAG+AGG - chr8_4:1398734-1398753 None:intergenic 35.0%
CAAGTAAGGTACACAATTAC+AGG - chr8_4:1398889-1398908 None:intergenic 35.0%
GGAAAATGAGCAAACAAGTA+AGG - chr8_4:1398903-1398922 None:intergenic 35.0%
! TTTGCTCATTTTCCTCAATG+AGG + chr8_4:1398909-1398928 Msa1306440:intron 35.0%
AATGCAATTGATCCTCATTG+AGG - chr8_4:1398924-1398943 None:intergenic 35.0%
CAATGAGGATCAATTGCATT+AGG + chr8_4:1398924-1398943 Msa1306440:intron 35.0%
TAACACAACTGTGACTTTAG+AGG + chr8_4:1399083-1399102 Msa1306440:intron 35.0%
AACACAACTGTGACTTTAGA+GGG + chr8_4:1399084-1399103 Msa1306440:intron 35.0%
TTGTTAACAAAACCCATCGA+AGG - chr8_4:1399224-1399243 None:intergenic 35.0%
TAACAAAGTCTGACCTGATT+AGG - chr8_4:1399580-1399599 None:intergenic 35.0%
! AGTTTAAGTGAGTTGAGCTT+CGG + chr8_4:1399622-1399641 Msa1306440:intron 35.0%
! TGATTTGCAAGTACCTTTCT+TGG - chr8_4:1399690-1399709 None:intergenic 35.0%
CACATTGCATAACATTAGGA+TGG - chr8_4:1399799-1399818 None:intergenic 35.0%
CACATTGCATAACATTAGGA+TGG - chr8_4:1399799-1399818 None:intergenic 35.0%
!!! GAGTTTTAAGAAGGAAGTTC+AGG + chr8_4:1399927-1399946 Msa1306440:CDS 35.0%
! ATCCAACACAATGAAAGTGT+TGG - chr8_4:1400364-1400383 None:intergenic 35.0%
TTCATTGTGTTGGATGTGAA+TGG + chr8_4:1400369-1400388 Msa1306440:intron 35.0%
CGGTTTAATAAGCTTGAGTT+AGG + chr8_4:1400470-1400489 Msa1306440:intron 35.0%
CAAACTTAGGGAGATGTATT+TGG - chr8_4:1400813-1400832 None:intergenic 35.0%
CATCTCCCTAAGTTTGATTA+AGG + chr8_4:1400817-1400836 Msa1306440:intron 35.0%
! TTGACTTGACCTAATCGATT+CGG + chr8_4:1400897-1400916 Msa1306440:three_prime_UTR 35.0%
TACTAGGGTTGTTAATTGGT+GGG - chr8_4:1400954-1400973 None:intergenic 35.0%
ATACTAGGGTTGTTAATTGG+TGG - chr8_4:1400955-1400974 None:intergenic 35.0%
! TTTTGTTGGGAGTTCAAAGA+AGG + chr8_4:1401034-1401053 Msa1306440:three_prime_UTR 35.0%
TTTGTTGGGAGTTCAAAGAA+GGG + chr8_4:1401035-1401054 Msa1306440:three_prime_UTR 35.0%
GAATTTATGGTGGTACTAAC+TGG - chr8_4:1401229-1401248 None:intergenic 35.0%
TGTGACAACAAGGAAATGAA+AGG - chr8_4:1401322-1401341 None:intergenic 35.0%
AAAAAATGGCTGTGACAACA+AGG - chr8_4:1401332-1401351 None:intergenic 35.0%
CCATTAACATATACTGGTGA+AGG - chr8_4:1401467-1401486 None:intergenic 35.0%
CCTTCACCAGTATATGTTAA+TGG + chr8_4:1401464-1401483 Msa1306440:three_prime_UTR 35.0%
! TTTAGTTTCAAGGCGATCAA+GGG - chr8_4:1401660-1401679 None:intergenic 35.0%
!!! TTTTAGTTTCAAGGCGATCA+AGG - chr8_4:1401661-1401680 None:intergenic 35.0%
CTCTAATACAATTCTCCTCT+TGG - chr8_4:1401785-1401804 None:intergenic 35.0%
CAAGAGGAGAATTGTATTAG+AGG + chr8_4:1401783-1401802 Msa1306440:three_prime_UTR 35.0%
ATTGTATTAGAGGCAATGTG+AGG + chr8_4:1401793-1401812 Msa1306440:three_prime_UTR 35.0%
TCACTGAAGCCAAAACATTA+AGG - chr8_4:1401956-1401975 None:intergenic 35.0%
CCTTTAGATTTGAGAATGAG+AGG - chr8_4:1402112-1402131 None:intergenic 35.0%
CCTCTCATTCTCAAATCTAA+AGG + chr8_4:1402109-1402128 Msa1306440:three_prime_UTR 35.0%
!!! GAGGGTGTCCAAAATTTTAA+CGG + chr8_4:1402248-1402267 Msa1306440:three_prime_UTR 35.0%
!! GTCCAAAATTTTAACGGTGA+TGG + chr8_4:1402254-1402273 Msa1306440:three_prime_UTR 35.0%
!! TTTTAACGGTGATGGTAATG+AGG + chr8_4:1402262-1402281 Msa1306440:three_prime_UTR 35.0%
TTCATTCTCGCAAACGTAAA+AGG + chr8_4:1402342-1402361 Msa1306440:three_prime_UTR 35.0%
TCATTCTCGCAAACGTAAAA+GGG + chr8_4:1402343-1402362 Msa1306440:three_prime_UTR 35.0%
!!! CTTTTTTGTTCAGATGCTGA+AGG + chr8_4:1402448-1402467 Msa1306440:three_prime_UTR 35.0%
!! TTTGATGATGACCCATTGTT+TGG - chr8_4:1402509-1402528 None:intergenic 35.0%
AAACAATGGGTCATCATCAA+AGG + chr8_4:1402508-1402527 Msa1306440:three_prime_UTR 35.0%
!! ATGTGAAAACATTCTGGTTC+AGG - chr8_4:1402600-1402619 None:intergenic 35.0%
CCATTCATGTGAAAACATTC+TGG - chr8_4:1402606-1402625 None:intergenic 35.0%
! CCAGAATGTTTTCACATGAA+TGG + chr8_4:1402603-1402622 Msa1306440:intron 35.0%
!! CATGATTTGCATTTTGCTGT+GGG + chr8_4:1403020-1403039 Msa1306440:intron 35.0%
CTTCAACGGTGATTCAAATT+TGG - chr8_4:1403224-1403243 None:intergenic 35.0%
TGTTGTTACTGAAGTTGTTG+TGG + chr8_4:1403353-1403372 Msa1306440:intron 35.0%
CAACAACAACACTGATCTAA+AGG - chr8_4:1403431-1403450 Msa1306450:CDS 35.0%
! CTTTAGATCAGTGTTGTTGT+TGG + chr8_4:1403429-1403448 Msa1306440:intron 35.0%
AGCTGTTGTAGTTACACATT+TGG + chr8_4:1403452-1403471 Msa1306440:intron 35.0%
TAAGGAGATGAATCAAGAAG+AGG + chr8_4:1403508-1403527 Msa1306440:intron 35.0%
AAGAAGAGGTGGAAGATAAA+CGG + chr8_4:1403522-1403541 Msa1306440:intron 35.0%
CAAAAGAGCAACATTGGAAA+TGG - chr8_4:1403658-1403677 None:intergenic 35.0%
GTGTTTCAAAAGAGCAACAT+TGG - chr8_4:1403664-1403683 None:intergenic 35.0%
ATAGAACAGGAAGGATGAAT+GGG - chr8_4:1403698-1403717 None:intergenic 35.0%
AATAGAACAGGAAGGATGAA+TGG - chr8_4:1403699-1403718 None:intergenic 35.0%
!!! CAAAAGGTCACTTTTGCAAA+GGG + chr8_4:1403852-1403871 Msa1306440:intron 35.0%
!!! AAAAGGTCACTTTTGCAAAG+GGG + chr8_4:1403853-1403872 Msa1306440:intron 35.0%
! CTTTGTCAATGTTGCGATTT+TGG - chr8_4:1403922-1403941 None:intergenic 35.0%
ATCGCAACATTGACAAAGTT+AGG + chr8_4:1403924-1403943 Msa1306440:intron 35.0%
TCGCAACATTGACAAAGTTA+GGG + chr8_4:1403925-1403944 Msa1306440:intron 35.0%
ATAAGCAGTGCATAAGGTTT+AGG - chr8_4:1403971-1403990 None:intergenic 35.0%
GAACTTGCCATGTTATTGTT+TGG + chr8_4:1404033-1404052 Msa1306440:intron 35.0%
CAGATCTCCAAACAATAACA+TGG - chr8_4:1404043-1404062 None:intergenic 35.0%
! ATCTTTTGGATCTTGTCTAC+TGG - chr8_4:1404194-1404213 None:intergenic 35.0%
AGTAGACAAGATCCAAAAGA+TGG + chr8_4:1404193-1404212 Msa1306440:intron 35.0%
AATCAAATCTGCAGAAACGA+CGG - chr8_4:1404320-1404339 None:intergenic 35.0%
CAGATTTGATTAAGCCATCT+TGG + chr8_4:1404329-1404348 Msa1306440:three_prime_UTR 35.0%
ACAAGATCTGTTTCAGTTGT+AGG - chr8_4:1404493-1404512 None:intergenic 35.0%
ACAACTGAAACAGATCTTGT+TGG + chr8_4:1404493-1404512 Msa1306440:three_prime_UTR 35.0%
CAACTGAAACAGATCTTGTT+GGG + chr8_4:1404494-1404513 Msa1306440:three_prime_UTR 35.0%
GACCAAACTGAAGTTTGAAT+TGG + chr8_4:1404594-1404613 Msa1306440:three_prime_UTR 35.0%
ACCCAATTCAAACTTCAGTT+TGG - chr8_4:1404599-1404618 None:intergenic 35.0%
! CCATTTTATCAAATCCCCAA+TGG - chr8_4:1404633-1404652 None:intergenic 35.0%
CCATTGGGGATTTGATAAAA+TGG + chr8_4:1404630-1404649 Msa1306440:three_prime_UTR 35.0%
AAAGAGATTTAAGGATGCGA+TGG + chr8_4:1404690-1404709 Msa1306440:three_prime_UTR 35.0%
AAGAGATTTAAGGATGCGAT+GGG + chr8_4:1404691-1404710 Msa1306440:three_prime_UTR 35.0%
!!! CAAAAAGACTTGTTTTGGGA+AGG - chr8_4:1404727-1404746 None:intergenic 35.0%
! CTTCCCAAAACAAGTCTTTT+TGG + chr8_4:1404725-1404744 Msa1306440:three_prime_UTR 35.0%
ACCCATCCATATACTTTCAA+AGG + chr8_4:1404752-1404771 Msa1306440:three_prime_UTR 35.0%
AAGGAAGACAAGAAAAGACA+TGG + chr8_4:1404771-1404790 Msa1306440:three_prime_UTR 35.0%
GAAGTTGAGTTTGGATCATT+TGG + chr8_4:1404880-1404899 Msa1306440:three_prime_UTR 35.0%
TTTGAGTAGACAAAACAGTG+TGG + chr8_4:1404982-1405001 Msa1306440:three_prime_UTR 35.0%
CTACATGTTCTTCCTCAAAA+TGG - chr8_4:1405012-1405031 None:intergenic 35.0%
CTTGAACCCCCTTAAATATA+AGG + chr8_4:1405205-1405224 Msa1306440:three_prime_UTR 35.0%
! TGCAAGCCTTATATTTAAGG+GGG - chr8_4:1405214-1405233 None:intergenic 35.0%
! GTGCAAGCCTTATATTTAAG+GGG - chr8_4:1405215-1405234 None:intergenic 35.0%
! GGTGCAAGCCTTATATTTAA+GGG - chr8_4:1405216-1405235 None:intergenic 35.0%
! TGGTGCAAGCCTTATATTTA+AGG - chr8_4:1405217-1405236 None:intergenic 35.0%
GTTCAATGTGTGCAACTTAA+CGG - chr8_4:1405258-1405277 None:intergenic 35.0%
AACATTGCTGTCCAATAACA+TGG + chr8_4:1405275-1405294 Msa1306440:three_prime_UTR 35.0%
TGTACATTACGCCATGTTAT+TGG - chr8_4:1405289-1405308 None:intergenic 35.0%
AAACGTGTGTAAGTTGCAGA+GGG + chr8_4:1399004-1399023 Msa1306440:intron 40.0%
TACAACTCATTGCAGGTGTA+TGG + chr8_4:1399156-1399175 Msa1306440:intron 40.0%
AGGTGTATGGAAGATAAGAG+TGG + chr8_4:1399169-1399188 Msa1306440:intron 40.0%
TCCTTATAAGTCTCCTTCGA+TGG + chr8_4:1399208-1399227 Msa1306440:CDS 40.0%
CCTTATAAGTCTCCTTCGAT+GGG + chr8_4:1399209-1399228 Msa1306440:CDS 40.0%
ATTGCATACCTGACCTAATC+AGG + chr8_4:1399564-1399583 Msa1306440:intron 40.0%
! GTTTAAGTGAGTTGAGCTTC+GGG + chr8_4:1399623-1399642 Msa1306440:intron 40.0%
! TTTAAGTGAGTTGAGCTTCG+GGG + chr8_4:1399624-1399643 Msa1306440:intron 40.0%
AAAACTCTTTAGGTGTCCCT+TGG - chr8_4:1399840-1399859 None:intergenic 40.0%
AAAACTCTTTAGGTGTCCCT+TGG - chr8_4:1399840-1399859 None:intergenic 40.0%
CAAGCGTAGGAGAATGTATT+GGG - chr8_4:1400192-1400211 None:intergenic 40.0%
TCAAGCGTAGGAGAATGTAT+TGG - chr8_4:1400193-1400212 None:intergenic 40.0%
AAATCTAACCTGGTTAGGTC+AGG - chr8_4:1400226-1400245 None:intergenic 40.0%
AACCAAATGTCGCAATTAGG+CGG - chr8_4:1400326-1400345 None:intergenic 40.0%
!! CAACACAATGAAAGTGTTGG+AGG - chr8_4:1400361-1400380 None:intergenic 40.0%
CTCCAACACTTTCATTGTGT+TGG + chr8_4:1400359-1400378 Msa1306440:intron 40.0%
ATTGTGTTGGATGTGAATGG+TGG + chr8_4:1400372-1400391 Msa1306440:intron 40.0%
TTGTGTTGGATGTGAATGGT+GGG + chr8_4:1400373-1400392 Msa1306440:intron 40.0%
TATAGTCCCACATTGCTTAG+AGG + chr8_4:1400397-1400416 Msa1306440:intron 40.0%
GCTTATTAAACCGGGTTGTA+AGG - chr8_4:1400463-1400482 None:intergenic 40.0%
! TGACTTGACCTAATCGATTC+GGG + chr8_4:1400898-1400917 Msa1306440:three_prime_UTR 40.0%
!! CTAATCGATTCGGGCTTTAT+CGG + chr8_4:1400907-1400926 Msa1306440:three_prime_UTR 40.0%
TTTATCGGACCGGACTAAAA+TGG + chr8_4:1400922-1400941 Msa1306440:three_prime_UTR 40.0%
TTATCGGACCGGACTAAAAT+GGG + chr8_4:1400923-1400942 Msa1306440:three_prime_UTR 40.0%
TTGTTGGGAGTTCAAAGAAG+GGG + chr8_4:1401036-1401055 Msa1306440:three_prime_UTR 40.0%
ATTAAACCCTCCTCTTCTCT+CGG - chr8_4:1401087-1401106 None:intergenic 40.0%
TCATTGCAGTGTGAAGAGAT+AGG - chr8_4:1401297-1401316 None:intergenic 40.0%
ATGTATTAGTTGCCAGCTAG+AGG + chr8_4:1401357-1401376 Msa1306440:three_prime_UTR 40.0%
AGTAGTGAGTCACAAGTTCA+TGG + chr8_4:1401622-1401641 Msa1306440:three_prime_UTR 40.0%
AGTCACAAGTTCATGGCAAA+CGG + chr8_4:1401629-1401648 Msa1306440:three_prime_UTR 40.0%
TTCTCCCTTGTGAAGGAAAA+AGG + chr8_4:1401867-1401886 Msa1306440:three_prime_UTR 40.0%
! TATGCTGCAGTATCGAGAAA+AGG + chr8_4:1401894-1401913 Msa1306440:three_prime_UTR 40.0%
! ATGCTGCAGTATCGAGAAAA+GGG + chr8_4:1401895-1401914 Msa1306440:three_prime_UTR 40.0%
! AGTATCGAGAAAAGGGTTGT+GGG + chr8_4:1401902-1401921 Msa1306440:three_prime_UTR 40.0%
GACTCTGTGATAGTTGATCT+GGG + chr8_4:1401924-1401943 Msa1306440:three_prime_UTR 40.0%
TGTGATAGTTGATCTGGGTT+TGG + chr8_4:1401929-1401948 Msa1306440:three_prime_UTR 40.0%
! GGGTTTGGACCTTAATGTTT+TGG + chr8_4:1401944-1401963 Msa1306440:three_prime_UTR 40.0%
ATCTGAGTGATTTCGAAGGT+TGG + chr8_4:1401994-1402013 Msa1306440:three_prime_UTR 40.0%
GATTTGAGAATGAGAGGCTT+TGG - chr8_4:1402106-1402125 None:intergenic 40.0%
TTGGTTAACCACAAGAGTGA+TGG + chr8_4:1402188-1402207 Msa1306440:three_prime_UTR 40.0%
!!! CACCCTCACATTTGTTGTTT+TGG - chr8_4:1402235-1402254 None:intergenic 40.0%
GACAATGAAAAATTCGGCAC+TGG + chr8_4:1402287-1402306 Msa1306440:three_prime_UTR 40.0%
AATACACCCATTTGATCCTG+AGG + chr8_4:1402406-1402425 Msa1306440:three_prime_UTR 40.0%
AAGCATGCAGAACCAAACAA+TGG + chr8_4:1402494-1402513 Msa1306440:three_prime_UTR 40.0%
AGCATGCAGAACCAAACAAT+GGG + chr8_4:1402495-1402514 Msa1306440:three_prime_UTR 40.0%
! CAGTTAGCAAGCTGAGATTT+TGG - chr8_4:1402749-1402768 None:intergenic 40.0%
TGTAACTGCACTATTGAGCT+TGG + chr8_4:1402908-1402927 Msa1306440:intron 40.0%
!! GCATGATTTGCATTTTGCTG+TGG + chr8_4:1403019-1403038 Msa1306440:intron 40.0%
ACACAATTCACATTCTGCTG+CGG + chr8_4:1403080-1403099 Msa1306440:intron 40.0%
AGTGTACTAGAGCTCTTCAA+CGG - chr8_4:1403238-1403257 None:intergenic 40.0%
GCTCTAGTACACTATGTGTT+TGG + chr8_4:1403245-1403264 Msa1306440:intron 40.0%
TGTAGATGTTGTGGAGAAAC+AGG + chr8_4:1403396-1403415 Msa1306440:intron 40.0%
TAAACGGAAGAAGGTGAAGT+TGG + chr8_4:1403538-1403557 Msa1306440:intron 40.0%
!!! CTTTTTTGCACCTCTTGTGA+TGG + chr8_4:1403615-1403634 Msa1306440:intron 40.0%
! CCTTTGCAAAAGTGACCTTT+TGG - chr8_4:1403854-1403873 None:intergenic 40.0%
!!! CCAAAAGGTCACTTTTGCAA+AGG + chr8_4:1403851-1403870 Msa1306440:intron 40.0%
TTGCAAAGGGGCTAAAACTT+AGG + chr8_4:1403865-1403884 Msa1306440:intron 40.0%
TGCAAAGGGGCTAAAACTTA+GGG + chr8_4:1403866-1403885 Msa1306440:intron 40.0%
CGCAACATTGACAAAGTTAG+GGG + chr8_4:1403926-1403945 Msa1306440:intron 40.0%
GCAACATTGACAAAGTTAGG+GGG + chr8_4:1403927-1403946 Msa1306440:intron 40.0%
AGAGTCATAAGCAGTGCATA+AGG - chr8_4:1403977-1403996 None:intergenic 40.0%
TTATGCACTGCTTATGACTC+TGG + chr8_4:1403976-1403995 Msa1306440:intron 40.0%
! TCTGAAACTGTCTCCTTTAC+AGG + chr8_4:1404255-1404274 Msa1306440:intron 40.0%
GGTTTGACAGAATCATGCAA+AGG - chr8_4:1404292-1404311 None:intergenic 40.0%
!! CGTGAAAAGCTTGTTTCTGT+AGG + chr8_4:1404364-1404383 Msa1306440:three_prime_UTR 40.0%
TAAACTACACCAGTCCATTG+CGG - chr8_4:1404412-1404431 None:intergenic 40.0%
GACTGGTGTAGTTTATGAGA+GGG + chr8_4:1404417-1404436 Msa1306440:three_prime_UTR 40.0%
TTTATGAGAGGGACTCCAAA+TGG + chr8_4:1404428-1404447 Msa1306440:three_prime_UTR 40.0%
TACTTGTGTGCCTAACCATT+TGG - chr8_4:1404446-1404465 None:intergenic 40.0%
AATGGTTAGGCACACAAGTA+TGG + chr8_4:1404446-1404465 Msa1306440:three_prime_UTR 40.0%
AAGTGTAGCTGCAATGTTCA+AGG + chr8_4:1404532-1404551 Msa1306440:three_prime_UTR 40.0%
GACTTCATATTGCTGCAAAC+AGG + chr8_4:1404572-1404591 Msa1306440:three_prime_UTR 40.0%
! TGGGTTCTGCATTTTACCAT+TGG + chr8_4:1404614-1404633 Msa1306440:three_prime_UTR 40.0%
! GGGTTCTGCATTTTACCATT+GGG + chr8_4:1404615-1404634 Msa1306440:three_prime_UTR 40.0%
! GGTTCTGCATTTTACCATTG+GGG + chr8_4:1404616-1404635 Msa1306440:three_prime_UTR 40.0%
AGAGATTTAAGGATGCGATG+GGG + chr8_4:1404692-1404711 Msa1306440:three_prime_UTR 40.0%
GACTATGAGGAAGTTGAGTT+TGG + chr8_4:1404871-1404890 Msa1306440:three_prime_UTR 40.0%
! GAGTTTGGATCATTTGGTGA+TGG + chr8_4:1404886-1404905 Msa1306440:three_prime_UTR 40.0%
!! GGATCATTTGGTGATGGTTT+CGG + chr8_4:1404892-1404911 Msa1306440:three_prime_UTR 40.0%
!! GATCATTTGGTGATGGTTTC+GGG + chr8_4:1404893-1404912 Msa1306440:three_prime_UTR 40.0%
TCCATGAAATCCATAGATGG+AGG - chr8_4:1404934-1404953 None:intergenic 40.0%
CACTCCATGAAATCCATAGA+TGG - chr8_4:1404937-1404956 None:intergenic 40.0%
!! TGTAAATCAATGGGTTGAGG+GGG - chr8_4:1405161-1405180 None:intergenic 40.0%
!! GTGTAAATCAATGGGTTGAG+GGG - chr8_4:1405162-1405181 None:intergenic 40.0%
!! GGTGTAAATCAATGGGTTGA+GGG - chr8_4:1405163-1405182 None:intergenic 40.0%
!! AGGTGTAAATCAATGGGTTG+AGG - chr8_4:1405164-1405183 None:intergenic 40.0%
GCTTCGTCAAGTACATGTCT+CGG - chr8_4:1398453-1398472 None:intergenic 45.0%
GAAACGTGTGTAAGTTGCAG+AGG + chr8_4:1399003-1399022 Msa1306440:intron 45.0%
TTTAGAGGGCGAACTGAAGT+GGG + chr8_4:1399098-1399117 Msa1306440:intron 45.0%
CCCATCGAAGGAGACTTATA+AGG - chr8_4:1399212-1399231 None:intergenic 45.0%
GAATTTCAGGGTTCAAACCC+TGG + chr8_4:1399316-1399335 Msa1306440:intron 45.0%
AGTAGTCATGCTCGTTTCCA+GGG - chr8_4:1399336-1399355 None:intergenic 45.0%
TAGTAGTCATGCTCGTTTCC+AGG - chr8_4:1399337-1399356 None:intergenic 45.0%
AAGTCTGACCTGATTAGGTC+AGG - chr8_4:1399575-1399594 None:intergenic 45.0%
! TTAAGTGAGTTGAGCTTCGG+GGG + chr8_4:1399625-1399644 Msa1306440:intron 45.0%
GGTATGCGATAATCAAGCGT+AGG - chr8_4:1400205-1400224 None:intergenic 45.0%
TGGAAATCCCGCTTTCATTG+CGG + chr8_4:1400299-1400318 Msa1306440:intron 45.0%
GGCAACCAAATGTCGCAATT+AGG - chr8_4:1400329-1400348 None:intergenic 45.0%
!! AAGTGTTGGAGGTTGCAAGA+AGG - chr8_4:1400350-1400369 None:intergenic 45.0%
TCCCACATTGCTTAGAGGTA+TGG + chr8_4:1400402-1400421 Msa1306440:intron 45.0%
GCCATACCTCTAAGCAATGT+GGG - chr8_4:1400406-1400425 None:intergenic 45.0%
TGCCATACCTCTAAGCAATG+TGG - chr8_4:1400407-1400426 None:intergenic 45.0%
AAAAATTAACGGGGGGGCTT+TGG + chr8_4:1400621-1400640 Msa1306440:intron 45.0%
AAAATTAACGGGGGGGCTTT+GGG + chr8_4:1400622-1400641 Msa1306440:intron 45.0%
CGATAAAGCCCGAATCGATT+AGG - chr8_4:1400909-1400928 None:intergenic 45.0%
ACAAAATACCCCGAGAGAAG+AGG + chr8_4:1401074-1401093 Msa1306440:intron 45.0%
TTAAACCCTCCTCTTCTCTC+GGG - chr8_4:1401086-1401105 None:intergenic 45.0%
GTCACAAGTTCATGGCAAAC+GGG + chr8_4:1401630-1401649 Msa1306440:three_prime_UTR 45.0%
AAATGGCGATTGTCTTGTCG+AGG + chr8_4:1401700-1401719 Msa1306440:three_prime_UTR 45.0%
TGAGGATCAGCACTATCAAC+AGG - chr8_4:1401728-1401747 None:intergenic 45.0%
CCTTCACAAGGGAGAAAAGT+TGG - chr8_4:1401863-1401882 None:intergenic 45.0%
! CCAACTTTTCTCCCTTGTGA+AGG + chr8_4:1401860-1401879 Msa1306440:three_prime_UTR 45.0%
TCCCTTGTGAAGGAAAAAGG+AGG + chr8_4:1401870-1401889 Msa1306440:three_prime_UTR 45.0%
! CCCTCCTTTTTCCTTCACAA+GGG - chr8_4:1401874-1401893 None:intergenic 45.0%
CCCTTGTGAAGGAAAAAGGA+GGG + chr8_4:1401871-1401890 Msa1306440:three_prime_UTR 45.0%
! ACCCTCCTTTTTCCTTCACA+AGG - chr8_4:1401875-1401894 None:intergenic 45.0%
! CAGTATCGAGAAAAGGGTTG+TGG + chr8_4:1401901-1401920 Msa1306440:three_prime_UTR 45.0%
GGACTCTGTGATAGTTGATC+TGG + chr8_4:1401923-1401942 Msa1306440:three_prime_UTR 45.0%
!! AAAATTCGGCACTGGTGTCA+AGG + chr8_4:1402295-1402314 Msa1306440:three_prime_UTR 45.0%
GAAGGCAAGAGATGTTCTGT+CGG + chr8_4:1402466-1402485 Msa1306440:three_prime_UTR 45.0%
!! CTCAGCTTGCTAACTGCTAT+AGG + chr8_4:1402753-1402772 Msa1306440:intron 45.0%
! GCACAACCTTGAAATGGACT+GGG + chr8_4:1403042-1403061 Msa1306440:intron 45.0%
CACAATTCACATTCTGCTGC+GGG + chr8_4:1403081-1403100 Msa1306440:intron 45.0%
GTGCAGCCTTAAAACGGATA+GGG + chr8_4:1403103-1403122 Msa1306440:intron 45.0%
GGAGATGAATCAAGAAGAGG+TGG + chr8_4:1403511-1403530 Msa1306440:intron 45.0%
GGTGGAAGATAAACGGAAGA+AGG + chr8_4:1403529-1403548 Msa1306440:intron 45.0%
! GAAGAAGGTGAAGTTGGTTC+TGG + chr8_4:1403544-1403563 Msa1306440:intron 45.0%
!! GGCTGAGTTTGAGGCTATTT+TGG + chr8_4:1403591-1403610 Msa1306440:intron 45.0%
!! CCTTTTGGCCAATTTTGACC+AGG - chr8_4:1403839-1403858 None:intergenic 45.0%
CCTGGTCAAAATTGGCCAAA+AGG + chr8_4:1403836-1403855 Msa1306440:intron 45.0%
GCAAAGGGGCTAAAACTTAG+GGG + chr8_4:1403867-1403886 Msa1306440:intron 45.0%
CAAAGGGGCTAAAACTTAGG+GGG + chr8_4:1403868-1403887 Msa1306440:intron 45.0%
GGATGCATCTTCACCTGTAA+AGG - chr8_4:1404271-1404290 None:intergenic 45.0%
CGAGAATCATCATCCCAAGA+TGG - chr8_4:1404346-1404365 None:intergenic 45.0%
AAACTACACCAGTCCATTGC+GGG - chr8_4:1404411-1404430 None:intergenic 45.0%
! GGACTGGTGTAGTTTATGAG+AGG + chr8_4:1404416-1404435 Msa1306440:three_prime_UTR 45.0%
GAAACAGATCTTGTTGGGAG+AGG + chr8_4:1404499-1404518 Msa1306440:three_prime_UTR 45.0%
GCGAAGAAGTTTCACTTCGA+TGG + chr8_4:1404653-1404672 Msa1306440:three_prime_UTR 45.0%
CTATCAGAATCGAGTGACTC+AGG + chr8_4:1404834-1404853 Msa1306440:three_prime_UTR 45.0%
AGCTATCAAGCCTCCATCTA+TGG + chr8_4:1404921-1404940 Msa1306440:three_prime_UTR 45.0%
GCCTCCATCTATGGATTTCA+TGG + chr8_4:1404930-1404949 Msa1306440:three_prime_UTR 45.0%
!! CAGTGTGGTAAGCCATTTTG+AGG + chr8_4:1404997-1405016 Msa1306440:three_prime_UTR 45.0%
TTTATTGCGTGCTCCTTCCT+TGG + chr8_4:1405080-1405099 Msa1306440:three_prime_UTR 45.0%
!! ATATATTTGATAAAAATTAA+CGG + chr8_4:1400610-1400629 Msa1306440:intron 5.0%
!!! TTATGTATATTAATTATTTT+AGG - chr8_4:1402723-1402742 None:intergenic 5.0%
!!! AAATTTTCATTTTTTTTATT+AGG + chr8_4:1403893-1403912 Msa1306440:intron 5.0%
!!! AATTTTCATTTTTTTTATTA+GGG + chr8_4:1403894-1403913 Msa1306440:intron 5.0%
ACATGTCTCGGCGTTTGCTT+GGG - chr8_4:1398441-1398460 None:intergenic 50.0%
TACATGTCTCGGCGTTTGCT+TGG - chr8_4:1398442-1398461 None:intergenic 50.0%
! CTTTAGAGGGCGAACTGAAG+TGG + chr8_4:1399097-1399116 Msa1306440:intron 50.0%
CAAGTACCTTTCTTGGCGCT+CGG - chr8_4:1399683-1399702 None:intergenic 50.0%
TTGCAAATCACCCTCCGAAG+AGG + chr8_4:1399700-1399719 Msa1306440:CDS 50.0%
AGTTGAACCCACGACATTGC+AGG + chr8_4:1399742-1399761 Msa1306440:CDS 50.0%
TGACTCACCTGCAATGTCGT+GGG - chr8_4:1399752-1399771 None:intergenic 50.0%
TTGACTCACCTGCAATGTCG+TGG - chr8_4:1399753-1399772 None:intergenic 50.0%
GAAGTTCAGGGTTCAAACGC+TGG + chr8_4:1399940-1399959 Msa1306440:CDS 50.0%
ATCGCATACCTGACCTAACC+AGG + chr8_4:1400215-1400234 Msa1306440:intron 50.0%
GGAAATCCCGCTTTCATTGC+GGG + chr8_4:1400300-1400319 Msa1306440:intron 50.0%
GAAGCTCTCACCTTACAACC+CGG + chr8_4:1400450-1400469 Msa1306440:intron 50.0%
AAATACCCCGAGAGAAGAGG+AGG + chr8_4:1401077-1401096 Msa1306440:intron 50.0%
AATACCCCGAGAGAAGAGGA+GGG + chr8_4:1401078-1401097 Msa1306440:intron 50.0%
TAAACCCTCCTCTTCTCTCG+GGG - chr8_4:1401085-1401104 None:intergenic 50.0%
TAGTTGCCAGCTAGAGGTCT+TGG + chr8_4:1401363-1401382 Msa1306440:three_prime_UTR 50.0%
GATTGACCAAGACCTCTAGC+TGG - chr8_4:1401372-1401391 None:intergenic 50.0%
CTGTGGGCACAACCTTGAAA+TGG + chr8_4:1403036-1403055 Msa1306440:intron 50.0%
GGCACAACCTTGAAATGGAC+TGG + chr8_4:1403041-1403060 Msa1306440:intron 50.0%
GGTGCAGCCTTAAAACGGAT+AGG + chr8_4:1403102-1403121 Msa1306440:intron 50.0%
GAGACTCATGCTGTTGTTGC+TGG + chr8_4:1403570-1403589 Msa1306440:intron 50.0%
! GTTGTTGCTGGCTGAGTTTG+AGG + chr8_4:1403582-1403601 Msa1306440:intron 50.0%
ACCTCTTGTGATGGCTGTCA+CGG + chr8_4:1403624-1403643 Msa1306440:intron 50.0%
!! GGCGTTGACCTGGTCAAAAT+TGG + chr8_4:1403828-1403847 Msa1306440:intron 50.0%
TGTAGGTCGTCGTTTCCAAG+CGG + chr8_4:1404381-1404400 Msa1306440:three_prime_UTR 50.0%
GAGAGGGACTCCAAATGGTT+AGG + chr8_4:1404433-1404452 Msa1306440:three_prime_UTR 50.0%
GACTGTTGACAGCGACTATG+AGG + chr8_4:1404858-1404877 Msa1306440:three_prime_UTR 50.0%
!! CATTTGGTGATGGTTTCGGG+AGG + chr8_4:1404896-1404915 Msa1306440:three_prime_UTR 50.0%
GGTTACAGATGAGAGAGAGC+TGG - chr8_4:1405237-1405256 None:intergenic 50.0%
CATGTCTCGGCGTTTGCTTG+GGG - chr8_4:1398440-1398459 None:intergenic 55.0%
CAACAGCTGCTGCTGACCTA+TGG + chr8_4:1398856-1398875 Msa1306440:intron 55.0%
AGCATGTGGACCTCTTCGGA+GGG - chr8_4:1399713-1399732 None:intergenic 55.0%
TGCCAGCATGTGGACCTCTT+CGG - chr8_4:1399717-1399736 None:intergenic 55.0%
AGAGGTCCACATGCTGGCAA+TGG + chr8_4:1399718-1399737 Msa1306440:CDS 55.0%
GAGGTCCACATGCTGGCAAT+GGG + chr8_4:1399719-1399738 Msa1306440:CDS 55.0%
CAACTCCCATTGCCAGCATG+TGG - chr8_4:1399727-1399746 None:intergenic 55.0%
GGCCGCCTAATTGCGACATT+TGG + chr8_4:1400321-1400340 Msa1306440:intron 55.0%
! CGATTCGGGCTTTATCGGAC+CGG + chr8_4:1400912-1400931 Msa1306440:three_prime_UTR 55.0%
! GGGTTGTTAATTGGTGGGCC+AGG - chr8_4:1400949-1400968 None:intergenic 55.0%
TGACTGACACCGAGCATCAC+CGG - chr8_4:1401825-1401844 None:intergenic 55.0%
CTGCGGGTGCAGCCTTAAAA+CGG + chr8_4:1403097-1403116 Msa1306440:intron 55.0%
! GCACGGCCCTATCCGTTTTA+AGG - chr8_4:1403112-1403131 None:intergenic 55.0%
CATTTGGCCGCCGTTGAATG+TGG + chr8_4:1403468-1403487 Msa1306440:intron 55.0%
GCTAGCACCGCCACATTCAA+CGG - chr8_4:1403481-1403500 Msa1306450:CDS 55.0%
! GTTGAATGTGGCGGTGCTAG+CGG + chr8_4:1403480-1403499 Msa1306440:intron 55.0%
ACCGTGACAGCCATCACAAG+AGG - chr8_4:1403628-1403647 None:intergenic 55.0%
TCTTGTGATGGCTGTCACGG+TGG + chr8_4:1403627-1403646 Msa1306440:intron 55.0%
! ACAGACGTGGCATGCCACTT+AGG + chr8_4:1403807-1403826 Msa1306440:intron 55.0%
!! ATGCCACTTAGGCGTTGACC+TGG + chr8_4:1403818-1403837 Msa1306440:intron 55.0%
TGACCAGGTCAACGCCTAAG+TGG - chr8_4:1403824-1403843 None:intergenic 55.0%
TCTGCAGAAACGACGGCATC+TGG - chr8_4:1404313-1404332 None:intergenic 55.0%
CTTGTTGGGAGAGGAAGACG+AGG + chr8_4:1404508-1404527 Msa1306440:three_prime_UTR 55.0%
ATTGCGTGCTCCTTCCTTGG+AGG + chr8_4:1405083-1405102 Msa1306440:three_prime_UTR 55.0%
TGCATCCCCTGGATACAAGC+TGG - chr8_4:1405132-1405151 None:intergenic 55.0%
CAGCATGTGGACCTCTTCGG+AGG - chr8_4:1399714-1399733 None:intergenic 60.0%
CTCCGAAGAGGTCCACATGC+TGG + chr8_4:1399712-1399731 Msa1306440:CDS 60.0%
TAGGCGGCCCGCAATGAAAG+CGG - chr8_4:1400310-1400329 None:intergenic 60.0%
GGACCGGACTAAAATGGGCC+TGG + chr8_4:1400928-1400947 Msa1306440:three_prime_UTR 60.0%
!! GGGCCAGGCCCATTTTAGTC+CGG - chr8_4:1400934-1400953 None:intergenic 60.0%
AGGCAATGTGAGGCCTGAGC+CGG + chr8_4:1401803-1401822 Msa1306440:three_prime_UTR 60.0%
GGGCGACCCAGTCCATTTCA+AGG - chr8_4:1403051-1403070 None:intergenic 60.0%
ACGGATAGGGCCGTGCATAC+TGG + chr8_4:1403116-1403135 Msa1306440:intron 60.0%
TTGGCCGCCGTTGAATGTGG+CGG + chr8_4:1403471-1403490 Msa1306440:intron 60.0%
AGCACCGCCACATTCAACGG+CGG - chr8_4:1403478-1403497 Msa1306450:CDS 60.0%
TCCAAGCGGAAGTCCCGCAA+TGG + chr8_4:1404395-1404414 Msa1306440:three_prime_UTR 60.0%
TCCATTGCGGGACTTCCGCT+TGG - chr8_4:1404399-1404418 None:intergenic 60.0%
GCGGAGCCAGCTTGTATCCA+GGG + chr8_4:1405123-1405142 Msa1306440:three_prime_UTR 60.0%
CGGAGCCAGCTTGTATCCAG+GGG + chr8_4:1405124-1405143 Msa1306440:three_prime_UTR 60.0%
TTGAGCTTCGGGGGCTCACC+AGG + chr8_4:1399634-1399653 Msa1306440:intron 65.0%
TGAGCTTCGGGGGCTCACCA+GGG + chr8_4:1399635-1399654 Msa1306440:intron 65.0%
AGGCGGCCCGCAATGAAAGC+GGG - chr8_4:1400309-1400328 None:intergenic 65.0%
AGGCCTGAGCCGGTGATGCT+CGG + chr8_4:1401813-1401832 Msa1306440:three_prime_UTR 65.0%
!! ACACCGAGCATCACCGGCTC+AGG - chr8_4:1401819-1401838 None:intergenic 65.0%
! GAATGTGGCGGTGCTAGCGG+CGG + chr8_4:1403483-1403502 Msa1306440:intron 65.0%
GCGGAAGTCCCGCAATGGAC+TGG + chr8_4:1404400-1404419 Msa1306440:three_prime_UTR 65.0%
GTTGGCAGCGCCTCCAAGGA+AGG - chr8_4:1405096-1405115 None:intergenic 65.0%
! TACAAGCTGGCTCCGCCCCT+GGG - chr8_4:1405119-1405138 None:intergenic 65.0%
! ATACAAGCTGGCTCCGCCCC+TGG - chr8_4:1405120-1405139 None:intergenic 65.0%
GGCGGAGCCAGCTTGTATCC+AGG + chr8_4:1405122-1405141 Msa1306440:three_prime_UTR 65.0%
TTCGGGGGCTCACCAGGGTC+AGG + chr8_4:1399640-1399659 Msa1306440:intron 70.0%
TCGGGGGCTCACCAGGGTCA+GGG + chr8_4:1399641-1399660 Msa1306440:intron 70.0%
CTTGAGGCCTGCCCTGACCC+TGG - chr8_4:1399655-1399674 None:intergenic 70.0%
CAGGGTCAGGGCAGGCCTCA+AGG + chr8_4:1399653-1399672 Msa1306440:intron 70.0%
TTGGCGCTCGGCGAGCCTTG+AGG - chr8_4:1399671-1399690 None:intergenic 70.0%
GGCTCGCCGAGCGCCAAGAA+AGG + chr8_4:1399674-1399693 Msa1306440:CDS 70.0%
! GCGGTGCTAGCGGCGGTGTA+AGG + chr8_4:1403490-1403509 Msa1306440:intron 70.0%
! TGGGGTTGGCAGCGCCTCCA+AGG - chr8_4:1405100-1405119 None:intergenic 70.0%
!! TTGGAGGCGCTGCCAACCCC+AGG + chr8_4:1405099-1405118 Msa1306440:three_prime_UTR 70.0%
!! TGGAGGCGCTGCCAACCCCA+GGG + chr8_4:1405100-1405119 Msa1306440:three_prime_UTR 70.0%
! ACAAGCTGGCTCCGCCCCTG+GGG - chr8_4:1405118-1405137 None:intergenic 70.0%
GGGGGTTCAGCTGCATCCCC+TGG - chr8_4:1405143-1405162 None:intergenic 70.0%
GGGCTCACCAGGGTCAGGGC+AGG + chr8_4:1399645-1399664 Msa1306440:intron 75.0%
!! GGAGGCGCTGCCAACCCCAG+GGG + chr8_4:1405101-1405120 Msa1306440:three_prime_UTR 75.0%
! GGCGCTGCCAACCCCAGGGG+CGG + chr8_4:1405104-1405123 Msa1306440:three_prime_UTR 80.0%
!! GCTGGCTCCGCCCCTGGGGT+TGG - chr8_4:1405114-1405133 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 1398430 1405343 1398430 ID=Msa1306440;Name=Msa1306440
chr8_4 mRNA 1398430 1405343 1398430 ID=Msa1306440-mRNA-1;Parent=Msa1306440;Name=Msa1306440-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0|0.57|0.5|0.87|0.57|0.62|8|2572|130
chr8_4 exon 1398430 1398479 1398430 ID=Msa1306440-mRNA-1:exon:359;Parent=Msa1306440-mRNA-1
chr8_4 exon 1398616 1398695 1398616 ID=Msa1306440-mRNA-1:exon:360;Parent=Msa1306440-mRNA-1
chr8_4 exon 1399171 1399270 1399171 ID=Msa1306440-mRNA-1:exon:361;Parent=Msa1306440-mRNA-1
chr8_4 exon 1399667 1399763 1399667 ID=Msa1306440-mRNA-1:exon:362;Parent=Msa1306440-mRNA-1
chr8_4 exon 1399916 1399985 1399916 ID=Msa1306440-mRNA-1:exon:363;Parent=Msa1306440-mRNA-1
chr8_4 exon 1400895 1401070 1400895 ID=Msa1306440-mRNA-1:exon:364;Parent=Msa1306440-mRNA-1
chr8_4 exon 1401205 1402529 1401205 ID=Msa1306440-mRNA-1:exon:365;Parent=Msa1306440-mRNA-1
chr8_4 exon 1404277 1405343 1404277 ID=Msa1306440-mRNA-1:exon:366;Parent=Msa1306440-mRNA-1
chr8_4 CDS 1398430 1398479 1398430 ID=Msa1306440-mRNA-1:cds;Parent=Msa1306440-mRNA-1
chr8_4 CDS 1398616 1398695 1398616 ID=Msa1306440-mRNA-1:cds;Parent=Msa1306440-mRNA-1
chr8_4 CDS 1399171 1399270 1399171 ID=Msa1306440-mRNA-1:cds;Parent=Msa1306440-mRNA-1
chr8_4 CDS 1399667 1399763 1399667 ID=Msa1306440-mRNA-1:cds;Parent=Msa1306440-mRNA-1
chr8_4 CDS 1399916 1399981 1399916 ID=Msa1306440-mRNA-1:cds;Parent=Msa1306440-mRNA-1
chr8_4 three_prime_UTR 1399982 1399985 1399982 ID=Msa1306440-mRNA-1:three_prime_utr;Parent=Msa1306440-mRNA-1
chr8_4 three_prime_UTR 1400895 1401070 1400895 ID=Msa1306440-mRNA-1:three_prime_utr;Parent=Msa1306440-mRNA-1
chr8_4 three_prime_UTR 1401205 1402529 1401205 ID=Msa1306440-mRNA-1:three_prime_utr;Parent=Msa1306440-mRNA-1
chr8_4 three_prime_UTR 1404277 1405343 1404277 ID=Msa1306440-mRNA-1:three_prime_utr;Parent=Msa1306440-mRNA-1
Gene Sequence

>Msa1306440

ATGTCTTCCCCAAGCAAACGCCGAGACATGTACTTGACGAAGCTGTCTCTGTTGATAACTGATTACAAAGTGGAGATGATCAATGATGGCATGCAAGAGTTCTTTGTTCAATTTCATAAACCTAAACATAGTGTATGGAAGATAAGAGTGGAGCTACCTGATGTTTATCCTTATAAGTCTCCTTCGATGGGTTTTGTTAACAAAGTTTACCATCCTAATGTTGATGAAATGCCTCAAGGCTCGCCGAGCGCCAAGAAAGGTACTTGCAAATCACCCTCCGAAGAGGTCCACATGCTGGCAATGGGAGTTGAACCCACGACATTGCAGGGACACCTAAAGAGTTTTAAGAAGGAAGTTCAGGGTTCAAACGCTGGAAACGAACATGACTACTAA
Protein sequence

>Msa1306440

MSSPSKRRDMYLTKLSLLITDYKVEMINDGMQEFFVQFHKPKHSVWKIRVELPDVYPYKSPSMGFVNKVYHPNVDEMPQGSPSAKKGTCKSPSEEVHMLAMGVEPTTLQGHLKSFKKEVQGSNAGNEHDY*