Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0688730 | GAU13611.1 | 64.430 | 298 | 61 | 1 | 11 | 263 | 40 | 337 | 1.06e-120 | 365 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0688730 | sp|Q9FPW6|POB1_ARATH | 71.014 | 207 | 60 | 0 | 53 | 259 | 142 | 348 | 9.12e-98 | 300 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0688730 | A0A445FLD9 | 60.065 | 308 | 68 | 2 | 11 | 263 | 42 | 349 | 2.93e-115 | 348 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0688730 | Msa1038010 | 0.831458 | 1.650654e-55 | -8.615850e-47 |
| Msa0688730 | Msa1432320 | 0.998196 | 1.636050e-258 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0688730 | MtrunA17_Chr8g0347801 | 56.169 | 308 | 80 | 2 | 11 | 263 | 39 | 346 | 8.68e-109 | 325 |
| Msa0688730 | MtrunA17_Chr4g0046761 | 53.371 | 178 | 58 | 2 | 34 | 186 | 5 | 182 | 1.22e-52 | 169 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0688730 | AT3G61600.2 | 71.014 | 207 | 60 | 0 | 53 | 259 | 142 | 348 | 8.41e-99 | 300 |
| Msa0688730 | AT3G61600.1 | 71.014 | 207 | 60 | 0 | 53 | 259 | 142 | 348 | 9.27e-99 | 300 |
| Msa0688730 | AT2G46260.1 | 60.924 | 238 | 79 | 1 | 26 | 263 | 127 | 350 | 4.92e-96 | 293 |
| Msa0688730 | AT4G01160.1 | 50.000 | 282 | 109 | 4 | 11 | 263 | 19 | 297 | 1.72e-74 | 236 |
| Msa0688730 | AT4G01160.2 | 45.724 | 304 | 111 | 4 | 11 | 263 | 19 | 319 | 1.20e-70 | 226 |
Find 79 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTCCAGCTTTGGGTATT+GGG | 0.122003 | 4_4:+54877153 | None:intergenic |
| TCTCTTCCAGCTTTGGGTAT+TGG | 0.224569 | 4_4:+54877152 | None:intergenic |
| GCTTCCTTCCAGTGTCTTGA+TGG | 0.278274 | 4_4:-54877600 | Msa0688730:CDS |
| TTGCGTGTATAAATTATTAT+AGG | 0.280285 | 4_4:-54879599 | Msa0688730:five_prime_UTR |
| GAGGACATCAAGAATGAAAA+TGG | 0.348170 | 4_4:-54879426 | Msa0688730:intron |
| GACCTCACCAATTGCATTGC+TGG | 0.354612 | 4_4:-54877732 | Msa0688730:CDS |
| TCTAATGGGATGAGGGAGTC+AGG | 0.376662 | 4_4:-54877935 | Msa0688730:CDS |
| TTCATTAATGACCAGGCATC+AGG | 0.389990 | 4_4:-54877287 | Msa0688730:intron |
| CCAGTATATATTACAACAAA+AGG | 0.399094 | 4_4:+54876966 | None:intergenic |
| TGCATTGCTGGATGTCTTGA+TGG | 0.401371 | 4_4:-54877720 | Msa0688730:CDS |
| CACCAGTATCTATCCATTCT+CGG | 0.418747 | 4_4:-54879556 | Msa0688730:CDS |
| GCAGCCAAGCAATACCTTGC+TGG | 0.425891 | 4_4:-54877551 | Msa0688730:CDS |
| ATCCGCTGCGCACACATTCA+AGG | 0.430487 | 4_4:-54877094 | Msa0688730:CDS |
| TGGTTCCACAAGGGCAGATT+GGG | 0.431076 | 4_4:-54879472 | Msa0688730:CDS |
| GCATGTTAGCTCTTCTATCC+TGG | 0.436731 | 4_4:-54878063 | Msa0688730:CDS |
| ATCCGAGAATGGATAGATAC+TGG | 0.440769 | 4_4:+54879554 | None:intergenic |
| CTGATGGACATGCCTTTAGC+TGG | 0.452238 | 4_4:-54877259 | Msa0688730:CDS |
| ATGGTTCCACAAGGGCAGAT+TGG | 0.454058 | 4_4:-54879473 | Msa0688730:CDS |
| AAAGAGACTAAGAGAGATGA+TGG | 0.455924 | 4_4:+54879650 | None:intergenic |
| TGCACGACTTTGTGCTTAAG+TGG | 0.466726 | 4_4:-54877183 | Msa0688730:CDS |
| ATTGCCTTTACTCCAGCTAA+AGG | 0.469526 | 4_4:+54877247 | None:intergenic |
| CGTGCATGACATACTGCAGC+AGG | 0.478713 | 4_4:-54877673 | Msa0688730:CDS |
| CAATGCAGTCTCCGGTGTCA+TGG | 0.488356 | 4_4:+54877634 | None:intergenic |
| GTGTGCGCAGCGGATGAAGC+GGG | 0.490022 | 4_4:+54877102 | None:intergenic |
| AAGACATCCAGCAATGCAAT+TGG | 0.494046 | 4_4:+54877725 | None:intergenic |
| TGAAGTATTCTATCCGAGAA+TGG | 0.494218 | 4_4:+54879543 | None:intergenic |
| ACTTTGTGCTTAAGTGGGTA+CGG | 0.495962 | 4_4:-54877177 | Msa0688730:CDS |
| TGCCCTTGTGGAACCATCCT+CGG | 0.503341 | 4_4:+54879479 | None:intergenic |
| AGCGGGCAAGCTTTGCTTCG+AGG | 0.503600 | 4_4:+54877119 | None:intergenic |
| AGGTTGAGGCACCACATCGC+TGG | 0.503990 | 4_4:-54877074 | Msa0688730:exon |
| CAGGCATCAGGAGGAGCTGA+TGG | 0.504481 | 4_4:-54877275 | Msa0688730:CDS |
| TACTGGCAAATTGCACTTGG+TGG | 0.513949 | 4_4:-54876949 | Msa0688730:three_prime_UTR |
| TGCTTGGCTGCATCTAGCAA+CGG | 0.519700 | 4_4:+54877563 | None:intergenic |
| AGGTAGAGCAATGCAGTCTC+CGG | 0.521970 | 4_4:+54877626 | None:intergenic |
| ATACCCAAAGCTGGAAGAGA+TGG | 0.522209 | 4_4:-54877149 | Msa0688730:CDS |
| CATGCCTTTAGCTGGAGTAA+AGG | 0.523060 | 4_4:-54877251 | Msa0688730:CDS |
| GCTAGTATCCGCCAGCGATG+TGG | 0.529980 | 4_4:+54877063 | None:intergenic |
| ACCGTGAGAATCACTGCATC+TGG | 0.531887 | 4_4:-54877899 | Msa0688730:intron |
| ACTCACAGGTGATGAGCTGC+AGG | 0.532712 | 4_4:-54877224 | Msa0688730:CDS |
| GGAGTAAAGGCAATACTCAC+AGG | 0.533986 | 4_4:-54877238 | Msa0688730:CDS |
| AATGCAGTCTCCGGTGTCAT+GGG | 0.534326 | 4_4:+54877635 | None:intergenic |
| TACCCAAAGCTGGAAGAGAT+GGG | 0.535874 | 4_4:-54877148 | Msa0688730:CDS |
| ACGGGCCCAATACCCAAAGC+TGG | 0.550161 | 4_4:-54877158 | Msa0688730:CDS |
| CTTTGTGCTTAAGTGGGTAC+GGG | 0.552133 | 4_4:-54877176 | Msa0688730:CDS |
| ACGGCCAGCAAGGTATTGCT+TGG | 0.559147 | 4_4:+54877547 | None:intergenic |
| TGCAGAGGAAGCTCCTCTCA+TGG | 0.560844 | 4_4:-54877792 | Msa0688730:intron |
| ACTTAGTTACATCTTTGTAA+CGG | 0.572795 | 4_4:+54877528 | None:intergenic |
| TGCGCACACATTCAAGGTTG+AGG | 0.573625 | 4_4:-54877088 | Msa0688730:exon |
| ACTCATTCTAACGCCGAGGA+TGG | 0.576781 | 4_4:-54879492 | Msa0688730:CDS |
| CATCTTTGTAACGGCCAGCA+AGG | 0.578112 | 4_4:+54877537 | None:intergenic |
| ATATACTGGCAAATTGCACT+TGG | 0.581596 | 4_4:-54876952 | Msa0688730:three_prime_UTR |
| TGAGCTGCAGGTTGCATCTG+AGG | 0.587313 | 4_4:-54877212 | Msa0688730:CDS |
| ATAATAATTTATACACGCAA+AGG | 0.588504 | 4_4:+54879602 | None:intergenic |
| TCAGCCATCAAGACACTGGA+AGG | 0.588550 | 4_4:+54877596 | None:intergenic |
| GATGGCCGCAGACAGATTCG+AGG | 0.597081 | 4_4:-54877702 | Msa0688730:CDS |
| CTAATGGGATGAGGGAGTCA+GGG | 0.597141 | 4_4:-54877934 | Msa0688730:CDS |
| GCTAGCCCAATCTGCCCTTG+TGG | 0.603075 | 4_4:+54879467 | None:intergenic |
| AGCATCAGCCATCAAGACAC+TGG | 0.603828 | 4_4:+54877592 | None:intergenic |
| AAGAGACTAAGAGAGATGAT+GGG | 0.605712 | 4_4:+54879651 | None:intergenic |
| ATTGGGCTAGCCACGACAAG+AGG | 0.606487 | 4_4:-54879455 | Msa0688730:CDS |
| AGACACTGGAAGGAAGCTCT+AGG | 0.606850 | 4_4:+54877606 | None:intergenic |
| ACCCAAAGCTGGAAGAGATG+GGG | 0.608418 | 4_4:-54877147 | Msa0688730:CDS |
| GCACGACTTTGTGCTTAAGT+GGG | 0.621433 | 4_4:-54877182 | Msa0688730:CDS |
| ATTAATGACCAGGCATCAGG+AGG | 0.625890 | 4_4:-54877284 | Msa0688730:intron |
| CCCAAAGCTGGAAGAGATGG+GGG | 0.628805 | 4_4:-54877146 | Msa0688730:CDS |
| TGTGTGCGCAGCGGATGAAG+CGG | 0.630964 | 4_4:+54877101 | None:intergenic |
| GCAAAATATACCCATGACAC+CGG | 0.631078 | 4_4:-54877645 | Msa0688730:CDS |
| ATCCAGCAATGCAATTGGTG+AGG | 0.643944 | 4_4:+54877730 | None:intergenic |
| TTGAGGCACCACATCGCTGG+CGG | 0.648868 | 4_4:-54877071 | Msa0688730:exon |
| CCTCTCTTATCCTCTTGTCG+TGG | 0.649947 | 4_4:+54879445 | None:intergenic |
| AAATTCAGAAGCTCCATGAG+AGG | 0.659074 | 4_4:+54877779 | None:intergenic |
| ACCAGATGCAGTGATTCTCA+CGG | 0.660940 | 4_4:+54877898 | None:intergenic |
| ACGCCGAGGATGGTTCCACA+AGG | 0.662886 | 4_4:-54879482 | Msa0688730:CDS |
| CCACGACAAGAGGATAAGAG+AGG | 0.664175 | 4_4:-54879445 | Msa0688730:CDS |
| CGCAACCTCGAATCTGTCTG+CGG | 0.683210 | 4_4:+54877697 | None:intergenic |
| CGCCGAGGATGGTTCCACAA+GGG | 0.684386 | 4_4:-54879481 | Msa0688730:CDS |
| TGAAACTCATTCTAACGCCG+AGG | 0.696384 | 4_4:-54879496 | Msa0688730:CDS |
| AACCTTGAATGTGTGCGCAG+CGG | 0.697674 | 4_4:+54877092 | None:intergenic |
| GTGCATGACATACTGCAGCA+GGG | 0.699994 | 4_4:-54877672 | Msa0688730:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTCATTTTTTATTTTTTT+TGG | - | chr4_4:54877437-54877456 | Msa0688730:intron | 10.0% |
| !!! | AAAAAAAAAAAAACAAGTTT+TGG | + | chr4_4:54877533-54877552 | None:intergenic | 10.0% |
| !!! | AAAAAAAATATTTTCTAAGT+AGG | + | chr4_4:54879207-54879226 | None:intergenic | 10.0% |
| !! | AATTCACATATTATTATGTT+CGG | + | chr4_4:54877815-54877834 | None:intergenic | 15.0% |
| !! | ATTATTTGTCAAATATTCAT+TGG | - | chr4_4:54878007-54878026 | Msa0688730:intron | 15.0% |
| !! | TATCAGTAATTTAAATAAAG+TGG | + | chr4_4:54879111-54879130 | None:intergenic | 15.0% |
| !! | ATAATAATTTATACACGCAA+AGG | + | chr4_4:54877005-54877024 | None:intergenic | 20.0% |
| !! | TTGCGTGTATAAATTATTAT+AGG | - | chr4_4:54877005-54877024 | Msa0688730:three_prime_UTR | 20.0% |
| !!! | GTTTTATGTGTTTATGAAAA+TGG | - | chr4_4:54877318-54877337 | Msa0688730:intron | 20.0% |
| !!! | TTATATTCATGTCATTTTCT+AGG | - | chr4_4:54877487-54877506 | Msa0688730:intron | 20.0% |
| !!! | TATATTCATGTCATTTTCTA+GGG | - | chr4_4:54877488-54877507 | Msa0688730:intron | 20.0% |
| !!! | AAAAAACAAGTTTTGGTTTA+TGG | + | chr4_4:54877526-54877545 | None:intergenic | 20.0% |
| !!! | TGTGAATTAGTTTTTCAAAA+TGG | - | chr4_4:54877827-54877846 | Msa0688730:intron | 20.0% |
| !! | TTGACAAATAATCAATTTAC+CGG | + | chr4_4:54877999-54878018 | None:intergenic | 20.0% |
| !!! | GATTTTTACAATAAATGTAC+AGG | + | chr4_4:54878048-54878067 | None:intergenic | 20.0% |
| !!! | ATGTATAATTGCTTCTTTTT+TGG | - | chr4_4:54878426-54878445 | Msa0688730:intron | 20.0% |
| !! | TTGAGTTATTATTAATGTAC+AGG | - | chr4_4:54878485-54878504 | Msa0688730:intron | 20.0% |
| !!! | GAAAAGCTCATTTTTTAATA+AGG | - | chr4_4:54878568-54878587 | Msa0688730:intron | 20.0% |
| ! | TCAAAAAACACAAAATGCAA+GGG | + | chr4_4:54877220-54877239 | None:intergenic | 25.0% |
| !!! | TGTGTTTTTTGAGATAATAG+AGG | - | chr4_4:54877228-54877247 | Msa0688730:CDS | 25.0% |
| !!! | GTGTTTTTTGAGATAATAGA+GGG | - | chr4_4:54877229-54877248 | Msa0688730:CDS | 25.0% |
| ! | TATACCATAACTTGACATTA+TGG | - | chr4_4:54877341-54877360 | Msa0688730:intron | 25.0% |
| ! | TATACCATAATGTCAAGTTA+TGG | + | chr4_4:54877348-54877367 | None:intergenic | 25.0% |
| ! | GAAAATTATTGTGATTCATC+TGG | - | chr4_4:54877564-54877583 | Msa0688730:CDS | 25.0% |
| !! | ATACTTTCTCTAGAAAATAG+AGG | - | chr4_4:54877608-54877627 | Msa0688730:CDS | 25.0% |
| !! | TACTTTCTCTAGAAAATAGA+GGG | - | chr4_4:54877609-54877628 | Msa0688730:CDS | 25.0% |
| ! | AAATCAAATGAACCGTATTA+AGG | - | chr4_4:54877664-54877683 | Msa0688730:CDS | 25.0% |
| ! | AACTTAGATATGTCTTTCAA+AGG | - | chr4_4:54877738-54877757 | Msa0688730:CDS | 25.0% |
| !! | TATGGTTTTCGTGAAAAAAA+GGG | + | chr4_4:54877792-54877811 | None:intergenic | 25.0% |
| ! | ACATATTATTATGTTCGGTA+TGG | + | chr4_4:54877810-54877829 | None:intergenic | 25.0% |
| ! | TTTGTAACACATTACTAAAC+TGG | - | chr4_4:54877883-54877902 | Msa0688730:intron | 25.0% |
| !!! | TTACTAAACTGGTTTTTCAA+CGG | - | chr4_4:54877894-54877913 | Msa0688730:intron | 25.0% |
| !! | ATGATTTGTCAATCATTTGT+TGG | + | chr4_4:54878076-54878095 | None:intergenic | 25.0% |
| ! | TATTATTAATGTACAGGTGA+TGG | - | chr4_4:54878491-54878510 | Msa0688730:intron | 25.0% |
| !! | CTTCTGAATTTTATGTACAA+CGG | - | chr4_4:54878837-54878856 | Msa0688730:intron | 25.0% |
| ! | ACTTAGTTACATCTTTGTAA+CGG | + | chr4_4:54879079-54879098 | None:intergenic | 25.0% |
| !!! | ATATTTTTGCATTGTATGCA+AGG | - | chr4_4:54879240-54879259 | Msa0688730:intron | 25.0% |
| ! | TTGAGATTTAAACAAACTGA+AGG | + | chr4_4:54879266-54879285 | None:intergenic | 25.0% |
| ! | TGAAACTTATTAGCATTCAA+AGG | + | chr4_4:54879301-54879320 | None:intergenic | 25.0% |
| ! | AATAAGTTTCATTAATGACC+AGG | - | chr4_4:54879310-54879329 | Msa0688730:intron | 25.0% |
| !!! | TATTGAGTTGTCTTTTTAGT+TGG | - | chr4_4:54879578-54879597 | Msa0688730:exon | 25.0% |
| ! | CCAGTATATATTACAACAAA+AGG | + | chr4_4:54879641-54879660 | None:intergenic | 25.0% |
| !!! | CCTTTTGTTGTAATATATAC+TGG | - | chr4_4:54879638-54879657 | Msa0688730:five_prime_UTR | 25.0% |
| CTCAAAAAACACAAAATGCA+AGG | + | chr4_4:54877221-54877240 | None:intergenic | 30.0% | |
| GAGACATTATGTAACTTGAT+TGG | - | chr4_4:54877282-54877301 | Msa0688730:intron | 30.0% | |
| GACAATAAAACACCATGTAA+GGG | + | chr4_4:54877392-54877411 | None:intergenic | 30.0% | |
| TGACAATAAAACACCATGTA+AGG | + | chr4_4:54877393-54877412 | None:intergenic | 30.0% | |
| !!! | TGTCATTTTCTAGGGATATA+AGG | - | chr4_4:54877496-54877515 | Msa0688730:intron | 30.0% |
| AGTTTGTGGAAACCTTAATA+CGG | + | chr4_4:54877679-54877698 | None:intergenic | 30.0% | |
| ! | AAATGTTCCTTTTCAGTTTG+TGG | + | chr4_4:54877693-54877712 | None:intergenic | 30.0% |
| ! | GTATGGTTTTCGTGAAAAAA+AGG | + | chr4_4:54877793-54877812 | None:intergenic | 30.0% |
| CAAATAATCAATTTACCGGA+TGG | + | chr4_4:54877995-54878014 | None:intergenic | 30.0% | |
| ! | ATTTGTCAATCATTTGTTGG+TGG | + | chr4_4:54878073-54878092 | None:intergenic | 30.0% |
| TTGACAAATCATCCCAATTT+CGG | - | chr4_4:54878084-54878103 | Msa0688730:CDS | 30.0% | |
| CTTAAAACCCCTGTTTAATT+TGG | - | chr4_4:54878155-54878174 | Msa0688730:intron | 30.0% | |
| TAGAGCAAACAAATCTGATT+AGG | + | chr4_4:54878764-54878783 | None:intergenic | 30.0% | |
| AAGAGACTAAGAGAGATGAT+GGG | + | chr4_4:54876956-54876975 | None:intergenic | 35.0% | |
| AAAGAGACTAAGAGAGATGA+TGG | + | chr4_4:54876957-54876976 | None:intergenic | 35.0% | |
| ! | TGAAGTATTCTATCCGAGAA+TGG | + | chr4_4:54877064-54877083 | None:intergenic | 35.0% |
| GAGGACATCAAGAATGAAAA+TGG | - | chr4_4:54877178-54877197 | Msa0688730:CDS | 35.0% | |
| AAAACACCATGTAAGGGTTT+AGG | + | chr4_4:54877386-54877405 | None:intergenic | 35.0% | |
| TTATTGTGATTCATCTGGTG+TGG | - | chr4_4:54877569-54877588 | Msa0688730:CDS | 35.0% | |
| AAGGTTTCCACAAACTGAAA+AGG | - | chr4_4:54877683-54877702 | Msa0688730:CDS | 35.0% | |
| AATCAATATACCGCTGAGTA+CGG | + | chr4_4:54877928-54877947 | None:intergenic | 35.0% | |
| TGACAAATCATCCCAATTTC+GGG | - | chr4_4:54878085-54878104 | Msa0688730:CDS | 35.0% | |
| CCTCTTAAATACCCGAAATT+GGG | + | chr4_4:54878099-54878118 | None:intergenic | 35.0% | |
| TCCTCTTAAATACCCGAAAT+TGG | + | chr4_4:54878100-54878119 | None:intergenic | 35.0% | |
| !! | TGTGTTATTTGATCTTGCCA+TGG | - | chr4_4:54878222-54878241 | Msa0688730:intron | 35.0% |
| ! | GCAGATGTTTTACAAATGCA+GGG | - | chr4_4:54878312-54878331 | Msa0688730:intron | 35.0% |
| TGACTACATGTGTAAACTGT+TGG | + | chr4_4:54878407-54878426 | None:intergenic | 35.0% | |
| ! | GGTAGATGTCTTTTCTTCAT+TGG | - | chr4_4:54878589-54878608 | Msa0688730:intron | 35.0% |
| ! | GATGTCTTTTCTTCATTGGT+TGG | - | chr4_4:54878593-54878612 | Msa0688730:intron | 35.0% |
| ! | ATGTTGCAGCTTTTCTCTAA+TGG | - | chr4_4:54878654-54878673 | Msa0688730:intron | 35.0% |
| ! | TGTTGCAGCTTTTCTCTAAT+GGG | - | chr4_4:54878655-54878674 | Msa0688730:intron | 35.0% |
| ATATACTGGCAAATTGCACT+TGG | - | chr4_4:54879652-54879671 | Msa0688730:five_prime_UTR | 35.0% | |
| CACCAGTATCTATCCATTCT+CGG | - | chr4_4:54877048-54877067 | Msa0688730:three_prime_UTR | 40.0% | |
| ATCCGAGAATGGATAGATAC+TGG | + | chr4_4:54877053-54877072 | None:intergenic | 40.0% | |
| TTCTCTCCTAAACCCTTACA+TGG | - | chr4_4:54877377-54877396 | Msa0688730:intron | 40.0% | |
| ! | CAGAGTAATCCAAAGCACTT+CGG | + | chr4_4:54877766-54877785 | None:intergenic | 40.0% |
| AATCAATTTACCGGATGGTC+CGG | + | chr4_4:54877990-54878009 | None:intergenic | 40.0% | |
| ! | CCCAATTTCGGGTATTTAAG+AGG | - | chr4_4:54878096-54878115 | Msa0688730:CDS | 40.0% |
| TGTGTATTACTTTGATGCCC+CGG | + | chr4_4:54878126-54878145 | None:intergenic | 40.0% | |
| AATGACACAAGTTCAAGTCG+TGG | - | chr4_4:54878277-54878296 | Msa0688730:intron | 40.0% | |
| ! | CGCAGATGTTTTACAAATGC+AGG | - | chr4_4:54878311-54878330 | Msa0688730:intron | 40.0% |
| !! | TCTCCATAATGGACTCACAA+TGG | - | chr4_4:54878336-54878355 | Msa0688730:intron | 40.0% |
| GATCCATTGTGAGTCCATTA+TGG | + | chr4_4:54878342-54878361 | None:intergenic | 40.0% | |
| ! | AGCTTTTCTCTAATGGGATG+AGG | - | chr4_4:54878661-54878680 | Msa0688730:intron | 40.0% |
| ! | GCTTTTCTCTAATGGGATGA+GGG | - | chr4_4:54878662-54878681 | Msa0688730:intron | 40.0% |
| AAATTCAGAAGCTCCATGAG+AGG | + | chr4_4:54878828-54878847 | None:intergenic | 40.0% | |
| AAGACATCCAGCAATGCAAT+TGG | + | chr4_4:54878882-54878901 | None:intergenic | 40.0% | |
| GCAAAATATACCCATGACAC+CGG | - | chr4_4:54878959-54878978 | Msa0688730:intron | 40.0% | |
| TTCATTAATGACCAGGCATC+AGG | - | chr4_4:54879317-54879336 | Msa0688730:intron | 40.0% | |
| ATTGCCTTTACTCCAGCTAA+AGG | + | chr4_4:54879360-54879379 | None:intergenic | 40.0% | |
| ACTTTGTGCTTAAGTGGGTA+CGG | - | chr4_4:54879427-54879446 | Msa0688730:CDS | 40.0% | |
| TGAAACTCATTCTAACGCCG+AGG | - | chr4_4:54877108-54877127 | Msa0688730:CDS | 45.0% | |
| ! | CGAAGTGCTTTGGATTACTC+TGG | - | chr4_4:54877764-54877783 | Msa0688730:CDS | 45.0% |
| CGGGTATTTAAGAGGAGAAC+CGG | - | chr4_4:54878104-54878123 | Msa0688730:intron | 45.0% | |
| GGGTATTTAAGAGGAGAACC+GGG | - | chr4_4:54878105-54878124 | Msa0688730:intron | 45.0% | |
| GGTATTTAAGAGGAGAACCG+GGG | - | chr4_4:54878106-54878125 | Msa0688730:intron | 45.0% | |
| CGCTAGGCCAAATTAAACAG+GGG | + | chr4_4:54878165-54878184 | None:intergenic | 45.0% | |
| CCGCTAGGCCAAATTAAACA+GGG | + | chr4_4:54878166-54878185 | None:intergenic | 45.0% | |
| !! | CCCTGTTTAATTTGGCCTAG+CGG | - | chr4_4:54878163-54878182 | Msa0688730:intron | 45.0% |
| AAATGCAGGGCTCTCCATAA+TGG | - | chr4_4:54878325-54878344 | Msa0688730:intron | 45.0% | |
| AGCAGGGTTCAAGGAAAGAT+CGG | + | chr4_4:54878364-54878383 | None:intergenic | 45.0% | |
| TCTTTCCTTGAACCCTGCTA+TGG | - | chr4_4:54878365-54878384 | Msa0688730:intron | 45.0% | |
| ATAAAACTCCCGCCATAGCA+GGG | + | chr4_4:54878380-54878399 | None:intergenic | 45.0% | |
| TATAAAACTCCCGCCATAGC+AGG | + | chr4_4:54878381-54878400 | None:intergenic | 45.0% | |
| ! | GCATGTTAGCTCTTCTATCC+TGG | - | chr4_4:54878541-54878560 | Msa0688730:intron | 45.0% |
| ! | AAAATGAGCTTTTCGCAGCC+AGG | + | chr4_4:54878562-54878581 | None:intergenic | 45.0% |
| ACCAGATGCAGTGATTCTCA+CGG | + | chr4_4:54878709-54878728 | None:intergenic | 45.0% | |
| GTTTCTCTTGCATGTTGCAG+AGG | - | chr4_4:54878797-54878816 | Msa0688730:intron | 45.0% | |
| ATCCAGCAATGCAATTGGTG+AGG | + | chr4_4:54878877-54878896 | None:intergenic | 45.0% | |
| TGCATTGCTGGATGTCTTGA+TGG | - | chr4_4:54878884-54878903 | Msa0688730:intron | 45.0% | |
| ATTAATGACCAGGCATCAGG+AGG | - | chr4_4:54879320-54879339 | Msa0688730:intron | 45.0% | |
| CATGCCTTTAGCTGGAGTAA+AGG | - | chr4_4:54879353-54879372 | Msa0688730:intron | 45.0% | |
| GGAGTAAAGGCAATACTCAC+AGG | - | chr4_4:54879366-54879385 | Msa0688730:intron | 45.0% | |
| TGCACGACTTTGTGCTTAAG+TGG | - | chr4_4:54879421-54879440 | Msa0688730:intron | 45.0% | |
| GCACGACTTTGTGCTTAAGT+GGG | - | chr4_4:54879422-54879441 | Msa0688730:intron | 45.0% | |
| CTTTGTGCTTAAGTGGGTAC+GGG | - | chr4_4:54879428-54879447 | Msa0688730:CDS | 45.0% | |
| !! | CTCTTCCAGCTTTGGGTATT+GGG | + | chr4_4:54879454-54879473 | None:intergenic | 45.0% |
| !! | TCTCTTCCAGCTTTGGGTAT+TGG | + | chr4_4:54879455-54879474 | None:intergenic | 45.0% |
| ATACCCAAAGCTGGAAGAGA+TGG | - | chr4_4:54879455-54879474 | Msa0688730:CDS | 45.0% | |
| TACCCAAAGCTGGAAGAGAT+GGG | - | chr4_4:54879456-54879475 | Msa0688730:CDS | 45.0% | |
| TACTGGCAAATTGCACTTGG+TGG | - | chr4_4:54879655-54879674 | Msa0688730:five_prime_UTR | 45.0% | |
| ACTCATTCTAACGCCGAGGA+TGG | - | chr4_4:54877112-54877131 | Msa0688730:CDS | 50.0% | |
| ATGGTTCCACAAGGGCAGAT+TGG | - | chr4_4:54877131-54877150 | Msa0688730:CDS | 50.0% | |
| TGGTTCCACAAGGGCAGATT+GGG | - | chr4_4:54877132-54877151 | Msa0688730:CDS | 50.0% | |
| CCTCTCTTATCCTCTTGTCG+TGG | + | chr4_4:54877162-54877181 | None:intergenic | 50.0% | |
| CCACGACAAGAGGATAAGAG+AGG | - | chr4_4:54877159-54877178 | Msa0688730:CDS | 50.0% | |
| !! | TCAAAGGTGCCGAAGTGCTT+TGG | - | chr4_4:54877754-54877773 | Msa0688730:CDS | 50.0% |
| ATATACCGCTGAGTACGGTG+TGG | + | chr4_4:54877923-54877942 | None:intergenic | 50.0% | |
| ATTTACCGGATGGTCCGGTT+CGG | + | chr4_4:54877985-54878004 | None:intergenic | 50.0% | |
| ! | TATTCATTGGTTGCGCGCAG+CGG | - | chr4_4:54878020-54878039 | Msa0688730:intron | 50.0% |
| GCCGCTAGGCCAAATTAAAC+AGG | + | chr4_4:54878167-54878186 | None:intergenic | 50.0% | |
| !! | TCAGATTTGAAAGCGCCGCT+AGG | + | chr4_4:54878181-54878200 | None:intergenic | 50.0% |
| TCTTGCCATGGCTCAACGAT+CGG | - | chr4_4:54878234-54878253 | Msa0688730:intron | 50.0% | |
| TTCCTTGAACCCTGCTATGG+CGG | - | chr4_4:54878368-54878387 | Msa0688730:intron | 50.0% | |
| TCTAATGGGATGAGGGAGTC+AGG | - | chr4_4:54878669-54878688 | Msa0688730:intron | 50.0% | |
| CTAATGGGATGAGGGAGTCA+GGG | - | chr4_4:54878670-54878689 | Msa0688730:intron | 50.0% | |
| ACCGTGAGAATCACTGCATC+TGG | - | chr4_4:54878705-54878724 | Msa0688730:intron | 50.0% | |
| GACCTCACCAATTGCATTGC+TGG | - | chr4_4:54878872-54878891 | Msa0688730:intron | 50.0% | |
| GTGCATGACATACTGCAGCA+GGG | - | chr4_4:54878932-54878951 | Msa0688730:intron | 50.0% | |
| !! | AATGCAGTCTCCGGTGTCAT+GGG | + | chr4_4:54878972-54878991 | None:intergenic | 50.0% |
| AGGTAGAGCAATGCAGTCTC+CGG | + | chr4_4:54878981-54879000 | None:intergenic | 50.0% | |
| AGACACTGGAAGGAAGCTCT+AGG | + | chr4_4:54879001-54879020 | None:intergenic | 50.0% | |
| GCTTCCTTCCAGTGTCTTGA+TGG | - | chr4_4:54879004-54879023 | Msa0688730:intron | 50.0% | |
| TCAGCCATCAAGACACTGGA+AGG | + | chr4_4:54879011-54879030 | None:intergenic | 50.0% | |
| AGCATCAGCCATCAAGACAC+TGG | + | chr4_4:54879015-54879034 | None:intergenic | 50.0% | |
| TGCTTGGCTGCATCTAGCAA+CGG | + | chr4_4:54879044-54879063 | None:intergenic | 50.0% | |
| CATCTTTGTAACGGCCAGCA+AGG | + | chr4_4:54879070-54879089 | None:intergenic | 50.0% | |
| ! | CTGATGGACATGCCTTTAGC+TGG | - | chr4_4:54879345-54879364 | Msa0688730:intron | 50.0% |
| ACCCAAAGCTGGAAGAGATG+GGG | - | chr4_4:54879457-54879476 | Msa0688730:CDS | 50.0% | |
| AACCTTGAATGTGTGCGCAG+CGG | + | chr4_4:54879515-54879534 | None:intergenic | 50.0% | |
| TGCGCACACATTCAAGGTTG+AGG | - | chr4_4:54879516-54879535 | Msa0688730:CDS | 50.0% | |
| TGCCCTTGTGGAACCATCCT+CGG | + | chr4_4:54877128-54877147 | None:intergenic | 55.0% | |
| !! | ATTGGGCTAGCCACGACAAG+AGG | - | chr4_4:54877149-54877168 | Msa0688730:CDS | 55.0% |
| GGATACCACACCGTACTCAG+CGG | - | chr4_4:54877915-54877934 | Msa0688730:CDS | 55.0% | |
| TTTGTGACACGCTGCCGAAC+CGG | - | chr4_4:54877968-54877987 | Msa0688730:intron | 55.0% | |
| CAACTCCGATCGTTGAGCCA+TGG | + | chr4_4:54878242-54878261 | None:intergenic | 55.0% | |
| TCCTTGAACCCTGCTATGGC+GGG | - | chr4_4:54878369-54878388 | Msa0688730:intron | 55.0% | |
| TGCAGAGGAAGCTCCTCTCA+TGG | - | chr4_4:54878812-54878831 | Msa0688730:intron | 55.0% | |
| CGCAACCTCGAATCTGTCTG+CGG | + | chr4_4:54878910-54878929 | None:intergenic | 55.0% | |
| CGTGCATGACATACTGCAGC+AGG | - | chr4_4:54878931-54878950 | Msa0688730:intron | 55.0% | |
| ! | CAATGCAGTCTCCGGTGTCA+TGG | + | chr4_4:54878973-54878992 | None:intergenic | 55.0% |
| GCAGCCAAGCAATACCTTGC+TGG | - | chr4_4:54879053-54879072 | Msa0688730:intron | 55.0% | |
| !! | ACGGCCAGCAAGGTATTGCT+TGG | + | chr4_4:54879060-54879079 | None:intergenic | 55.0% |
| ACTCACAGGTGATGAGCTGC+AGG | - | chr4_4:54879380-54879399 | Msa0688730:intron | 55.0% | |
| TGAGCTGCAGGTTGCATCTG+AGG | - | chr4_4:54879392-54879411 | Msa0688730:intron | 55.0% | |
| CCCCCATCTCTTCCAGCTTT+GGG | + | chr4_4:54879461-54879480 | None:intergenic | 55.0% | |
| CCCAAAGCTGGAAGAGATGG+GGG | - | chr4_4:54879458-54879477 | Msa0688730:CDS | 55.0% | |
| TCCCCCATCTCTTCCAGCTT+TGG | + | chr4_4:54879462-54879481 | None:intergenic | 55.0% | |
| ATCCGCTGCGCACACATTCA+AGG | - | chr4_4:54879510-54879529 | Msa0688730:CDS | 55.0% | |
| ACGCCGAGGATGGTTCCACA+AGG | - | chr4_4:54877122-54877141 | Msa0688730:CDS | 60.0% | |
| CGCCGAGGATGGTTCCACAA+GGG | - | chr4_4:54877123-54877142 | Msa0688730:CDS | 60.0% | |
| GCTAGCCCAATCTGCCCTTG+TGG | + | chr4_4:54877140-54877159 | None:intergenic | 60.0% | |
| TCCCGCCATAGCAGGGTTCA+AGG | + | chr4_4:54878373-54878392 | None:intergenic | 60.0% | |
| GATGGCCGCAGACAGATTCG+AGG | - | chr4_4:54878902-54878921 | Msa0688730:intron | 60.0% | |
| CATCAGCTCCTCCTGATGCC+TGG | + | chr4_4:54879331-54879350 | None:intergenic | 60.0% | |
| CAGGCATCAGGAGGAGCTGA+TGG | - | chr4_4:54879329-54879348 | Msa0688730:intron | 60.0% | |
| ACGGGCCCAATACCCAAAGC+TGG | - | chr4_4:54879446-54879465 | Msa0688730:CDS | 60.0% | |
| AGCGGGCAAGCTTTGCTTCG+AGG | + | chr4_4:54879488-54879507 | None:intergenic | 60.0% | |
| TGTGTGCGCAGCGGATGAAG+CGG | + | chr4_4:54879506-54879525 | None:intergenic | 60.0% | |
| ! | AGGTTGAGGCACCACATCGC+TGG | - | chr4_4:54879530-54879549 | Msa0688730:CDS | 60.0% |
| ! | TTGAGGCACCACATCGCTGG+CGG | - | chr4_4:54879533-54879552 | Msa0688730:CDS | 60.0% |
| GCTAGTATCCGCCAGCGATG+TGG | + | chr4_4:54879544-54879563 | None:intergenic | 60.0% | |
| GTGTGCGCAGCGGATGAAGC+GGG | + | chr4_4:54879505-54879524 | None:intergenic | 65.0% | |
| CGCTGCCGAACCGGACCATC+CGG | - | chr4_4:54877977-54877996 | Msa0688730:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 54876945 | 54879681 | 54876945 | ID=Msa0688730;Name=Msa0688730 |
| chr4_4 | mRNA | 54876945 | 54879681 | 54876945 | ID=Msa0688730-mRNA-1;Parent=Msa0688730;Name=Msa0688730-mRNA-1;_AED=0.03;_eAED=0.03;_QI=89|0.75|0.6|1|1|1|5|145|265 |
| chr4_4 | exon | 54876945 | 54877294 | 54876945 | ID=Msa0688730-mRNA-1:exon:14477;Parent=Msa0688730-mRNA-1 |
| chr4_4 | exon | 54877530 | 54877809 | 54877530 | ID=Msa0688730-mRNA-1:exon:14476;Parent=Msa0688730-mRNA-1 |
| chr4_4 | exon | 54877900 | 54877963 | 54877900 | ID=Msa0688730-mRNA-1:exon:14475;Parent=Msa0688730-mRNA-1 |
| chr4_4 | exon | 54878037 | 54878119 | 54878037 | ID=Msa0688730-mRNA-1:exon:14474;Parent=Msa0688730-mRNA-1 |
| chr4_4 | exon | 54879427 | 54879681 | 54879427 | ID=Msa0688730-mRNA-1:exon:14473;Parent=Msa0688730-mRNA-1 |
| chr4_4 | five_prime_UTR | 54879593 | 54879681 | 54879593 | ID=Msa0688730-mRNA-1:five_prime_utr;Parent=Msa0688730-mRNA-1 |
| chr4_4 | CDS | 54879427 | 54879592 | 54879427 | ID=Msa0688730-mRNA-1:cds;Parent=Msa0688730-mRNA-1 |
| chr4_4 | CDS | 54878037 | 54878119 | 54878037 | ID=Msa0688730-mRNA-1:cds;Parent=Msa0688730-mRNA-1 |
| chr4_4 | CDS | 54877900 | 54877963 | 54877900 | ID=Msa0688730-mRNA-1:cds;Parent=Msa0688730-mRNA-1 |
| chr4_4 | CDS | 54877530 | 54877809 | 54877530 | ID=Msa0688730-mRNA-1:cds;Parent=Msa0688730-mRNA-1 |
| chr4_4 | CDS | 54877090 | 54877294 | 54877090 | ID=Msa0688730-mRNA-1:cds;Parent=Msa0688730-mRNA-1 |
| chr4_4 | three_prime_UTR | 54876945 | 54877089 | 54876945 | ID=Msa0688730-mRNA-1:three_prime_utr;Parent=Msa0688730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
