Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1432320 | GAU13611.1 | 64.430 | 298 | 61 | 1 | 11 | 263 | 40 | 337 | 1.06e-120 | 365 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1432320 | sp|Q9FPW6|POB1_ARATH | 71.014 | 207 | 60 | 0 | 53 | 259 | 142 | 348 | 9.12e-98 | 300 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1432320 | A0A445FLD9 | 60.065 | 308 | 68 | 2 | 11 | 263 | 42 | 349 | 2.93e-115 | 348 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0688730 | Msa1432320 | 0.998196 | 1.636050e-258 | -8.615850e-47 |
| Msa1038010 | Msa1432320 | 0.833695 | 4.600183e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1432320 | MtrunA17_Chr8g0347801 | 56.169 | 308 | 80 | 2 | 11 | 263 | 39 | 346 | 8.68e-109 | 325 |
| Msa1432320 | MtrunA17_Chr4g0046761 | 53.371 | 178 | 58 | 2 | 34 | 186 | 5 | 182 | 1.22e-52 | 169 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1432320 | AT3G61600.2 | 71.014 | 207 | 60 | 0 | 53 | 259 | 142 | 348 | 8.41e-99 | 300 |
| Msa1432320 | AT3G61600.1 | 71.014 | 207 | 60 | 0 | 53 | 259 | 142 | 348 | 9.27e-99 | 300 |
| Msa1432320 | AT2G46260.1 | 60.924 | 238 | 79 | 1 | 26 | 263 | 127 | 350 | 4.92e-96 | 293 |
| Msa1432320 | AT4G01160.1 | 50.000 | 282 | 109 | 4 | 11 | 263 | 19 | 297 | 1.72e-74 | 236 |
| Msa1432320 | AT4G01160.2 | 45.724 | 304 | 111 | 4 | 11 | 263 | 19 | 319 | 1.20e-70 | 226 |
Find 79 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTCCAGCTTTGGGTATT+GGG | 0.122003 | tig0027080:+6763 | None:intergenic |
| TCTCTTCCAGCTTTGGGTAT+TGG | 0.224569 | tig0027080:+6762 | None:intergenic |
| GCTTCCTTCCAGTGTCTTGA+TGG | 0.278274 | tig0027080:-7210 | Msa1432320:CDS |
| TTGCGTGTATAAATTATTAT+AGG | 0.280285 | tig0027080:-9211 | Msa1432320:five_prime_UTR |
| GAGGACATCAAGAATGAAAA+TGG | 0.348170 | tig0027080:-9038 | Msa1432320:intron |
| GACCTCACCAATTGCATTGC+TGG | 0.354612 | tig0027080:-7342 | Msa1432320:CDS |
| TCTAATGGGATGAGGGAGTC+AGG | 0.376662 | tig0027080:-7545 | Msa1432320:CDS |
| TTCATTAATGACCAGGCATC+AGG | 0.389990 | tig0027080:-6897 | Msa1432320:intron |
| CCAGTATATATTACAACAAA+AGG | 0.399094 | tig0027080:+6576 | None:intergenic |
| TGCATTGCTGGATGTCTTGA+TGG | 0.401371 | tig0027080:-7330 | Msa1432320:CDS |
| CACCAGTATCTATCCATTCT+CGG | 0.418747 | tig0027080:-9168 | Msa1432320:CDS |
| GCAGCCAAGCAATACCTTGC+TGG | 0.425891 | tig0027080:-7161 | Msa1432320:CDS |
| ATCCGCTGCGCACACATTCA+AGG | 0.430487 | tig0027080:-6704 | Msa1432320:CDS |
| TGGTTCCACAAGGGCAGATT+GGG | 0.431076 | tig0027080:-9084 | Msa1432320:CDS |
| GCATGTTAGCTCTTCTATCC+TGG | 0.436731 | tig0027080:-7673 | Msa1432320:CDS |
| ATCCGAGAATGGATAGATAC+TGG | 0.440769 | tig0027080:+9166 | None:intergenic |
| CTGATGGACATGCCTTTAGC+TGG | 0.452238 | tig0027080:-6869 | Msa1432320:CDS |
| ATGGTTCCACAAGGGCAGAT+TGG | 0.454058 | tig0027080:-9085 | Msa1432320:CDS |
| AAAGAGACTAAGAGAGATGA+TGG | 0.455924 | tig0027080:+9262 | None:intergenic |
| TGCACGACTTTGTGCTTAAG+TGG | 0.466726 | tig0027080:-6793 | Msa1432320:CDS |
| ATTGCCTTTACTCCAGCTAA+AGG | 0.469526 | tig0027080:+6857 | None:intergenic |
| CGTGCATGACATACTGCAGC+AGG | 0.478713 | tig0027080:-7283 | Msa1432320:CDS |
| CAATGCAGTCTCCGGTGTCA+TGG | 0.488356 | tig0027080:+7244 | None:intergenic |
| GTGTGCGCAGCGGATGAAGC+GGG | 0.490022 | tig0027080:+6712 | None:intergenic |
| AAGACATCCAGCAATGCAAT+TGG | 0.494046 | tig0027080:+7335 | None:intergenic |
| TGAAGTATTCTATCCGAGAA+TGG | 0.494218 | tig0027080:+9155 | None:intergenic |
| ACTTTGTGCTTAAGTGGGTA+CGG | 0.495962 | tig0027080:-6787 | Msa1432320:CDS |
| TGCCCTTGTGGAACCATCCT+CGG | 0.503341 | tig0027080:+9091 | None:intergenic |
| AGCGGGCAAGCTTTGCTTCG+AGG | 0.503600 | tig0027080:+6729 | None:intergenic |
| AGGTTGAGGCACCACATCGC+TGG | 0.503990 | tig0027080:-6684 | Msa1432320:exon |
| CAGGCATCAGGAGGAGCTGA+TGG | 0.504481 | tig0027080:-6885 | Msa1432320:CDS |
| TACTGGCAAATTGCACTTGG+TGG | 0.513949 | tig0027080:-6559 | Msa1432320:three_prime_UTR |
| TGCTTGGCTGCATCTAGCAA+CGG | 0.519700 | tig0027080:+7173 | None:intergenic |
| AGGTAGAGCAATGCAGTCTC+CGG | 0.521970 | tig0027080:+7236 | None:intergenic |
| ATACCCAAAGCTGGAAGAGA+TGG | 0.522209 | tig0027080:-6759 | Msa1432320:CDS |
| CATGCCTTTAGCTGGAGTAA+AGG | 0.523060 | tig0027080:-6861 | Msa1432320:CDS |
| GCTAGTATCCGCCAGCGATG+TGG | 0.529980 | tig0027080:+6673 | None:intergenic |
| ACCGTGAGAATCACTGCATC+TGG | 0.531887 | tig0027080:-7509 | Msa1432320:intron |
| ACTCACAGGTGATGAGCTGC+AGG | 0.532712 | tig0027080:-6834 | Msa1432320:CDS |
| GGAGTAAAGGCAATACTCAC+AGG | 0.533986 | tig0027080:-6848 | Msa1432320:CDS |
| AATGCAGTCTCCGGTGTCAT+GGG | 0.534326 | tig0027080:+7245 | None:intergenic |
| TACCCAAAGCTGGAAGAGAT+GGG | 0.535874 | tig0027080:-6758 | Msa1432320:CDS |
| ACGGGCCCAATACCCAAAGC+TGG | 0.550161 | tig0027080:-6768 | Msa1432320:CDS |
| CTTTGTGCTTAAGTGGGTAC+GGG | 0.552133 | tig0027080:-6786 | Msa1432320:CDS |
| ACGGCCAGCAAGGTATTGCT+TGG | 0.559147 | tig0027080:+7157 | None:intergenic |
| TGCAGAGGAAGCTCCTCTCA+TGG | 0.560844 | tig0027080:-7402 | Msa1432320:intron |
| ACTTAGTTACATCTTTGTAA+CGG | 0.572795 | tig0027080:+7138 | None:intergenic |
| TGCGCACACATTCAAGGTTG+AGG | 0.573625 | tig0027080:-6698 | Msa1432320:exon |
| ACTCATTCTAACGCCGAGGA+TGG | 0.576781 | tig0027080:-9104 | Msa1432320:CDS |
| CATCTTTGTAACGGCCAGCA+AGG | 0.578112 | tig0027080:+7147 | None:intergenic |
| ATATACTGGCAAATTGCACT+TGG | 0.581596 | tig0027080:-6562 | Msa1432320:three_prime_UTR |
| TGAGCTGCAGGTTGCATCTG+AGG | 0.587313 | tig0027080:-6822 | Msa1432320:CDS |
| ATAATAATTTATACACGCAA+AGG | 0.588504 | tig0027080:+9214 | None:intergenic |
| TCAGCCATCAAGACACTGGA+AGG | 0.588550 | tig0027080:+7206 | None:intergenic |
| GATGGCCGCAGACAGATTCG+AGG | 0.597081 | tig0027080:-7312 | Msa1432320:CDS |
| CTAATGGGATGAGGGAGTCA+GGG | 0.597141 | tig0027080:-7544 | Msa1432320:CDS |
| GCTAGCCCAATCTGCCCTTG+TGG | 0.603075 | tig0027080:+9079 | None:intergenic |
| AGCATCAGCCATCAAGACAC+TGG | 0.603828 | tig0027080:+7202 | None:intergenic |
| AAGAGACTAAGAGAGATGAT+GGG | 0.605712 | tig0027080:+9263 | None:intergenic |
| ATTGGGCTAGCCACGACAAG+AGG | 0.606487 | tig0027080:-9067 | Msa1432320:CDS |
| AGACACTGGAAGGAAGCTCT+AGG | 0.606850 | tig0027080:+7216 | None:intergenic |
| ACCCAAAGCTGGAAGAGATG+GGG | 0.608418 | tig0027080:-6757 | Msa1432320:CDS |
| GCACGACTTTGTGCTTAAGT+GGG | 0.621433 | tig0027080:-6792 | Msa1432320:CDS |
| ATTAATGACCAGGCATCAGG+AGG | 0.625890 | tig0027080:-6894 | Msa1432320:intron |
| CCCAAAGCTGGAAGAGATGG+GGG | 0.628805 | tig0027080:-6756 | Msa1432320:CDS |
| TGTGTGCGCAGCGGATGAAG+CGG | 0.630964 | tig0027080:+6711 | None:intergenic |
| GCAAAATATACCCATGACAC+CGG | 0.631078 | tig0027080:-7255 | Msa1432320:CDS |
| ATCCAGCAATGCAATTGGTG+AGG | 0.643944 | tig0027080:+7340 | None:intergenic |
| TTGAGGCACCACATCGCTGG+CGG | 0.648868 | tig0027080:-6681 | Msa1432320:exon |
| CCTCTCTTATCCTCTTGTCG+TGG | 0.649947 | tig0027080:+9057 | None:intergenic |
| AAATTCAGAAGCTCCATGAG+AGG | 0.659074 | tig0027080:+7389 | None:intergenic |
| ACCAGATGCAGTGATTCTCA+CGG | 0.660940 | tig0027080:+7508 | None:intergenic |
| ACGCCGAGGATGGTTCCACA+AGG | 0.662886 | tig0027080:-9094 | Msa1432320:CDS |
| CCACGACAAGAGGATAAGAG+AGG | 0.664175 | tig0027080:-9057 | Msa1432320:CDS |
| CGCAACCTCGAATCTGTCTG+CGG | 0.683210 | tig0027080:+7307 | None:intergenic |
| CGCCGAGGATGGTTCCACAA+GGG | 0.684386 | tig0027080:-9093 | Msa1432320:CDS |
| TGAAACTCATTCTAACGCCG+AGG | 0.696384 | tig0027080:-9108 | Msa1432320:CDS |
| AACCTTGAATGTGTGCGCAG+CGG | 0.697674 | tig0027080:+6702 | None:intergenic |
| GTGCATGACATACTGCAGCA+GGG | 0.699994 | tig0027080:-7282 | Msa1432320:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTCATTTTTTATTTTTTT+TGG | - | tig0027080:7047-7066 | Msa1432320:intron | 10.0% |
| !!! | AAAAAAAAAAAAACAAGTTT+TGG | + | tig0027080:7143-7162 | None:intergenic | 10.0% |
| !!! | AAAAAAAATATTTTCTAAGT+AGG | + | tig0027080:8819-8838 | None:intergenic | 10.0% |
| !! | AATTCACATATTATTATGTT+CGG | + | tig0027080:7425-7444 | None:intergenic | 15.0% |
| !! | ATTATTTGTCAAATATTCAT+TGG | - | tig0027080:7617-7636 | Msa1432320:intron | 15.0% |
| !! | TATCAGTAATTTAAATAAAG+TGG | + | tig0027080:8723-8742 | None:intergenic | 15.0% |
| !! | ATAATAATTTATACACGCAA+AGG | + | tig0027080:6615-6634 | None:intergenic | 20.0% |
| !! | TTGCGTGTATAAATTATTAT+AGG | - | tig0027080:6615-6634 | Msa1432320:three_prime_UTR | 20.0% |
| !!! | GTTTTATGTGTTTATGAAAA+TGG | - | tig0027080:6928-6947 | Msa1432320:intron | 20.0% |
| !!! | TTATATTCATGTCATTTTCT+AGG | - | tig0027080:7097-7116 | Msa1432320:intron | 20.0% |
| !!! | TATATTCATGTCATTTTCTA+GGG | - | tig0027080:7098-7117 | Msa1432320:intron | 20.0% |
| !!! | AAAAAACAAGTTTTGGTTTA+TGG | + | tig0027080:7136-7155 | None:intergenic | 20.0% |
| !!! | TGTGAATTAGTTTTTCAAAA+TGG | - | tig0027080:7437-7456 | Msa1432320:intron | 20.0% |
| !! | TTGACAAATAATCAATTTAC+CGG | + | tig0027080:7609-7628 | None:intergenic | 20.0% |
| !!! | GATTTTTACAATAAATGTAC+AGG | + | tig0027080:7658-7677 | None:intergenic | 20.0% |
| !!! | ATGTATAATTGCTTCTTTTT+TGG | - | tig0027080:8038-8057 | Msa1432320:intron | 20.0% |
| !! | TTGAGTTATTATTAATGTAC+AGG | - | tig0027080:8097-8116 | Msa1432320:intron | 20.0% |
| !!! | GAAAAGCTCATTTTTTAATA+AGG | - | tig0027080:8180-8199 | Msa1432320:intron | 20.0% |
| ! | TCAAAAAACACAAAATGCAA+GGG | + | tig0027080:6830-6849 | None:intergenic | 25.0% |
| !!! | TGTGTTTTTTGAGATAATAG+AGG | - | tig0027080:6838-6857 | Msa1432320:CDS | 25.0% |
| !!! | GTGTTTTTTGAGATAATAGA+GGG | - | tig0027080:6839-6858 | Msa1432320:CDS | 25.0% |
| ! | TATACCATAACTTGACATTA+TGG | - | tig0027080:6951-6970 | Msa1432320:intron | 25.0% |
| ! | TATACCATAATGTCAAGTTA+TGG | + | tig0027080:6958-6977 | None:intergenic | 25.0% |
| ! | GAAAATTATTGTGATTCATC+TGG | - | tig0027080:7174-7193 | Msa1432320:CDS | 25.0% |
| !! | ATACTTTCTCTAGAAAATAG+AGG | - | tig0027080:7218-7237 | Msa1432320:CDS | 25.0% |
| !! | TACTTTCTCTAGAAAATAGA+GGG | - | tig0027080:7219-7238 | Msa1432320:CDS | 25.0% |
| ! | AAATCAAATGAACCGTATTA+AGG | - | tig0027080:7274-7293 | Msa1432320:CDS | 25.0% |
| ! | AACTTAGATATGTCTTTCAA+AGG | - | tig0027080:7348-7367 | Msa1432320:CDS | 25.0% |
| !! | TATGGTTTTCGTGAAAAAAA+GGG | + | tig0027080:7402-7421 | None:intergenic | 25.0% |
| ! | ACATATTATTATGTTCGGTA+TGG | + | tig0027080:7420-7439 | None:intergenic | 25.0% |
| ! | TTTGTAACACATTACTAAAC+TGG | - | tig0027080:7493-7512 | Msa1432320:intron | 25.0% |
| !!! | TTACTAAACTGGTTTTTCAA+CGG | - | tig0027080:7504-7523 | Msa1432320:intron | 25.0% |
| !! | ATGATTTGTCAATCATTTGT+TGG | + | tig0027080:7686-7705 | None:intergenic | 25.0% |
| ! | TATTATTAATGTACAGGTGA+TGG | - | tig0027080:8103-8122 | Msa1432320:intron | 25.0% |
| !! | CTTCTGAATTTTATGTACAA+CGG | - | tig0027080:8449-8468 | Msa1432320:intron | 25.0% |
| ! | ACTTAGTTACATCTTTGTAA+CGG | + | tig0027080:8691-8710 | None:intergenic | 25.0% |
| !!! | ATATTTTTGCATTGTATGCA+AGG | - | tig0027080:8852-8871 | Msa1432320:intron | 25.0% |
| ! | TTGAGATTTAAACAAACTGA+AGG | + | tig0027080:8878-8897 | None:intergenic | 25.0% |
| ! | TGAAACTTATTAGCATTCAA+AGG | + | tig0027080:8913-8932 | None:intergenic | 25.0% |
| ! | AATAAGTTTCATTAATGACC+AGG | - | tig0027080:8922-8941 | Msa1432320:intron | 25.0% |
| !!! | TATTGAGTTGTCTTTTTAGT+TGG | - | tig0027080:9190-9209 | Msa1432320:exon | 25.0% |
| ! | CCAGTATATATTACAACAAA+AGG | + | tig0027080:9253-9272 | None:intergenic | 25.0% |
| !!! | CCTTTTGTTGTAATATATAC+TGG | - | tig0027080:9250-9269 | Msa1432320:five_prime_UTR | 25.0% |
| CTCAAAAAACACAAAATGCA+AGG | + | tig0027080:6831-6850 | None:intergenic | 30.0% | |
| GAGACATTATGTAACTTGAT+TGG | - | tig0027080:6892-6911 | Msa1432320:intron | 30.0% | |
| GACAATAAAACACCATGTAA+GGG | + | tig0027080:7002-7021 | None:intergenic | 30.0% | |
| TGACAATAAAACACCATGTA+AGG | + | tig0027080:7003-7022 | None:intergenic | 30.0% | |
| !!! | TGTCATTTTCTAGGGATATA+AGG | - | tig0027080:7106-7125 | Msa1432320:intron | 30.0% |
| AGTTTGTGGAAACCTTAATA+CGG | + | tig0027080:7289-7308 | None:intergenic | 30.0% | |
| ! | AAATGTTCCTTTTCAGTTTG+TGG | + | tig0027080:7303-7322 | None:intergenic | 30.0% |
| ! | GTATGGTTTTCGTGAAAAAA+AGG | + | tig0027080:7403-7422 | None:intergenic | 30.0% |
| CAAATAATCAATTTACCGGA+TGG | + | tig0027080:7605-7624 | None:intergenic | 30.0% | |
| ! | ATTTGTCAATCATTTGTTGG+TGG | + | tig0027080:7683-7702 | None:intergenic | 30.0% |
| TTGACAAATCATCCCAATTT+CGG | - | tig0027080:7694-7713 | Msa1432320:CDS | 30.0% | |
| CTTAAAACCCCTGTTTAATT+TGG | - | tig0027080:7767-7786 | Msa1432320:intron | 30.0% | |
| TAGAGCAAACAAATCTGATT+AGG | + | tig0027080:8376-8395 | None:intergenic | 30.0% | |
| AAGAGACTAAGAGAGATGAT+GGG | + | tig0027080:6566-6585 | None:intergenic | 35.0% | |
| AAAGAGACTAAGAGAGATGA+TGG | + | tig0027080:6567-6586 | None:intergenic | 35.0% | |
| ! | TGAAGTATTCTATCCGAGAA+TGG | + | tig0027080:6674-6693 | None:intergenic | 35.0% |
| GAGGACATCAAGAATGAAAA+TGG | - | tig0027080:6788-6807 | Msa1432320:CDS | 35.0% | |
| AAAACACCATGTAAGGGTTT+AGG | + | tig0027080:6996-7015 | None:intergenic | 35.0% | |
| TTATTGTGATTCATCTGGTG+TGG | - | tig0027080:7179-7198 | Msa1432320:CDS | 35.0% | |
| AAGGTTTCCACAAACTGAAA+AGG | - | tig0027080:7293-7312 | Msa1432320:CDS | 35.0% | |
| AATCAATATACCGCTGAGTA+CGG | + | tig0027080:7538-7557 | None:intergenic | 35.0% | |
| TGACAAATCATCCCAATTTC+GGG | - | tig0027080:7695-7714 | Msa1432320:CDS | 35.0% | |
| CCTCTTAAATACCCGAAATT+GGG | + | tig0027080:7709-7728 | None:intergenic | 35.0% | |
| TCCTCTTAAATACCCGAAAT+TGG | + | tig0027080:7710-7729 | None:intergenic | 35.0% | |
| !! | TGTGTTATTTGATCTTGCCA+TGG | - | tig0027080:7834-7853 | Msa1432320:intron | 35.0% |
| ! | GCAGATGTTTTACAAATGCA+GGG | - | tig0027080:7924-7943 | Msa1432320:intron | 35.0% |
| TGACTACATGTGTAAACTGT+TGG | + | tig0027080:8019-8038 | None:intergenic | 35.0% | |
| ! | GGTAGATGTCTTTTCTTCAT+TGG | - | tig0027080:8201-8220 | Msa1432320:intron | 35.0% |
| ! | GATGTCTTTTCTTCATTGGT+TGG | - | tig0027080:8205-8224 | Msa1432320:intron | 35.0% |
| ! | ATGTTGCAGCTTTTCTCTAA+TGG | - | tig0027080:8266-8285 | Msa1432320:intron | 35.0% |
| ! | TGTTGCAGCTTTTCTCTAAT+GGG | - | tig0027080:8267-8286 | Msa1432320:intron | 35.0% |
| ATATACTGGCAAATTGCACT+TGG | - | tig0027080:9264-9283 | Msa1432320:five_prime_UTR | 35.0% | |
| CACCAGTATCTATCCATTCT+CGG | - | tig0027080:6658-6677 | Msa1432320:three_prime_UTR | 40.0% | |
| ATCCGAGAATGGATAGATAC+TGG | + | tig0027080:6663-6682 | None:intergenic | 40.0% | |
| TTCTCTCCTAAACCCTTACA+TGG | - | tig0027080:6987-7006 | Msa1432320:intron | 40.0% | |
| ! | CAGAGTAATCCAAAGCACTT+CGG | + | tig0027080:7376-7395 | None:intergenic | 40.0% |
| AATCAATTTACCGGATGGTC+CGG | + | tig0027080:7600-7619 | None:intergenic | 40.0% | |
| ! | CCCAATTTCGGGTATTTAAG+AGG | - | tig0027080:7706-7725 | Msa1432320:CDS | 40.0% |
| TGTGTATTACTTTGATGCCC+CGG | + | tig0027080:7736-7755 | None:intergenic | 40.0% | |
| AATGACACAAGTTCAAGTCG+TGG | - | tig0027080:7889-7908 | Msa1432320:intron | 40.0% | |
| ! | CGCAGATGTTTTACAAATGC+AGG | - | tig0027080:7923-7942 | Msa1432320:intron | 40.0% |
| !! | TCTCCATAATGGACTCACAA+TGG | - | tig0027080:7948-7967 | Msa1432320:intron | 40.0% |
| GATCCATTGTGAGTCCATTA+TGG | + | tig0027080:7954-7973 | None:intergenic | 40.0% | |
| ! | AGCTTTTCTCTAATGGGATG+AGG | - | tig0027080:8273-8292 | Msa1432320:intron | 40.0% |
| ! | GCTTTTCTCTAATGGGATGA+GGG | - | tig0027080:8274-8293 | Msa1432320:intron | 40.0% |
| AAATTCAGAAGCTCCATGAG+AGG | + | tig0027080:8440-8459 | None:intergenic | 40.0% | |
| AAGACATCCAGCAATGCAAT+TGG | + | tig0027080:8494-8513 | None:intergenic | 40.0% | |
| GCAAAATATACCCATGACAC+CGG | - | tig0027080:8571-8590 | Msa1432320:intron | 40.0% | |
| TTCATTAATGACCAGGCATC+AGG | - | tig0027080:8929-8948 | Msa1432320:intron | 40.0% | |
| ATTGCCTTTACTCCAGCTAA+AGG | + | tig0027080:8972-8991 | None:intergenic | 40.0% | |
| ACTTTGTGCTTAAGTGGGTA+CGG | - | tig0027080:9039-9058 | Msa1432320:CDS | 40.0% | |
| TGAAACTCATTCTAACGCCG+AGG | - | tig0027080:6718-6737 | Msa1432320:CDS | 45.0% | |
| ! | CGAAGTGCTTTGGATTACTC+TGG | - | tig0027080:7374-7393 | Msa1432320:CDS | 45.0% |
| CGGGTATTTAAGAGGAGAAC+CGG | - | tig0027080:7714-7733 | Msa1432320:intron | 45.0% | |
| GGGTATTTAAGAGGAGAACC+GGG | - | tig0027080:7715-7734 | Msa1432320:intron | 45.0% | |
| GGTATTTAAGAGGAGAACCG+GGG | - | tig0027080:7716-7735 | Msa1432320:intron | 45.0% | |
| CGCTAGGCCAAATTAAACAG+GGG | + | tig0027080:7777-7796 | None:intergenic | 45.0% | |
| CCGCTAGGCCAAATTAAACA+GGG | + | tig0027080:7778-7797 | None:intergenic | 45.0% | |
| !! | CCCTGTTTAATTTGGCCTAG+CGG | - | tig0027080:7775-7794 | Msa1432320:intron | 45.0% |
| AAATGCAGGGCTCTCCATAA+TGG | - | tig0027080:7937-7956 | Msa1432320:intron | 45.0% | |
| AGCAGGGTTCAAGGAAAGAT+CGG | + | tig0027080:7976-7995 | None:intergenic | 45.0% | |
| TCTTTCCTTGAACCCTGCTA+TGG | - | tig0027080:7977-7996 | Msa1432320:intron | 45.0% | |
| ATAAAACTCCCGCCATAGCA+GGG | + | tig0027080:7992-8011 | None:intergenic | 45.0% | |
| TATAAAACTCCCGCCATAGC+AGG | + | tig0027080:7993-8012 | None:intergenic | 45.0% | |
| ! | GCATGTTAGCTCTTCTATCC+TGG | - | tig0027080:8153-8172 | Msa1432320:intron | 45.0% |
| ! | AAAATGAGCTTTTCGCAGCC+AGG | + | tig0027080:8174-8193 | None:intergenic | 45.0% |
| ACCAGATGCAGTGATTCTCA+CGG | + | tig0027080:8321-8340 | None:intergenic | 45.0% | |
| GTTTCTCTTGCATGTTGCAG+AGG | - | tig0027080:8409-8428 | Msa1432320:intron | 45.0% | |
| ATCCAGCAATGCAATTGGTG+AGG | + | tig0027080:8489-8508 | None:intergenic | 45.0% | |
| TGCATTGCTGGATGTCTTGA+TGG | - | tig0027080:8496-8515 | Msa1432320:intron | 45.0% | |
| ATTAATGACCAGGCATCAGG+AGG | - | tig0027080:8932-8951 | Msa1432320:intron | 45.0% | |
| CATGCCTTTAGCTGGAGTAA+AGG | - | tig0027080:8965-8984 | Msa1432320:intron | 45.0% | |
| GGAGTAAAGGCAATACTCAC+AGG | - | tig0027080:8978-8997 | Msa1432320:intron | 45.0% | |
| TGCACGACTTTGTGCTTAAG+TGG | - | tig0027080:9033-9052 | Msa1432320:intron | 45.0% | |
| GCACGACTTTGTGCTTAAGT+GGG | - | tig0027080:9034-9053 | Msa1432320:intron | 45.0% | |
| CTTTGTGCTTAAGTGGGTAC+GGG | - | tig0027080:9040-9059 | Msa1432320:CDS | 45.0% | |
| !! | CTCTTCCAGCTTTGGGTATT+GGG | + | tig0027080:9066-9085 | None:intergenic | 45.0% |
| !! | TCTCTTCCAGCTTTGGGTAT+TGG | + | tig0027080:9067-9086 | None:intergenic | 45.0% |
| ATACCCAAAGCTGGAAGAGA+TGG | - | tig0027080:9067-9086 | Msa1432320:CDS | 45.0% | |
| TACCCAAAGCTGGAAGAGAT+GGG | - | tig0027080:9068-9087 | Msa1432320:CDS | 45.0% | |
| TACTGGCAAATTGCACTTGG+TGG | - | tig0027080:9267-9286 | Msa1432320:five_prime_UTR | 45.0% | |
| ACTCATTCTAACGCCGAGGA+TGG | - | tig0027080:6722-6741 | Msa1432320:CDS | 50.0% | |
| ATGGTTCCACAAGGGCAGAT+TGG | - | tig0027080:6741-6760 | Msa1432320:CDS | 50.0% | |
| TGGTTCCACAAGGGCAGATT+GGG | - | tig0027080:6742-6761 | Msa1432320:CDS | 50.0% | |
| CCTCTCTTATCCTCTTGTCG+TGG | + | tig0027080:6772-6791 | None:intergenic | 50.0% | |
| CCACGACAAGAGGATAAGAG+AGG | - | tig0027080:6769-6788 | Msa1432320:CDS | 50.0% | |
| !! | TCAAAGGTGCCGAAGTGCTT+TGG | - | tig0027080:7364-7383 | Msa1432320:CDS | 50.0% |
| ATATACCGCTGAGTACGGTG+TGG | + | tig0027080:7533-7552 | None:intergenic | 50.0% | |
| ATTTACCGGATGGTCCGGTT+CGG | + | tig0027080:7595-7614 | None:intergenic | 50.0% | |
| ! | TATTCATTGGTTGCGCGCAG+CGG | - | tig0027080:7630-7649 | Msa1432320:intron | 50.0% |
| GCCGCTAGGCCAAATTAAAC+AGG | + | tig0027080:7779-7798 | None:intergenic | 50.0% | |
| !! | TCAGATTTGAAAGCGCCGCT+AGG | + | tig0027080:7793-7812 | None:intergenic | 50.0% |
| TCTTGCCATGGCTCAACGAT+CGG | - | tig0027080:7846-7865 | Msa1432320:intron | 50.0% | |
| TTCCTTGAACCCTGCTATGG+CGG | - | tig0027080:7980-7999 | Msa1432320:intron | 50.0% | |
| TCTAATGGGATGAGGGAGTC+AGG | - | tig0027080:8281-8300 | Msa1432320:intron | 50.0% | |
| CTAATGGGATGAGGGAGTCA+GGG | - | tig0027080:8282-8301 | Msa1432320:intron | 50.0% | |
| ACCGTGAGAATCACTGCATC+TGG | - | tig0027080:8317-8336 | Msa1432320:intron | 50.0% | |
| GACCTCACCAATTGCATTGC+TGG | - | tig0027080:8484-8503 | Msa1432320:intron | 50.0% | |
| GTGCATGACATACTGCAGCA+GGG | - | tig0027080:8544-8563 | Msa1432320:intron | 50.0% | |
| !! | AATGCAGTCTCCGGTGTCAT+GGG | + | tig0027080:8584-8603 | None:intergenic | 50.0% |
| AGGTAGAGCAATGCAGTCTC+CGG | + | tig0027080:8593-8612 | None:intergenic | 50.0% | |
| AGACACTGGAAGGAAGCTCT+AGG | + | tig0027080:8613-8632 | None:intergenic | 50.0% | |
| GCTTCCTTCCAGTGTCTTGA+TGG | - | tig0027080:8616-8635 | Msa1432320:intron | 50.0% | |
| TCAGCCATCAAGACACTGGA+AGG | + | tig0027080:8623-8642 | None:intergenic | 50.0% | |
| AGCATCAGCCATCAAGACAC+TGG | + | tig0027080:8627-8646 | None:intergenic | 50.0% | |
| TGCTTGGCTGCATCTAGCAA+CGG | + | tig0027080:8656-8675 | None:intergenic | 50.0% | |
| CATCTTTGTAACGGCCAGCA+AGG | + | tig0027080:8682-8701 | None:intergenic | 50.0% | |
| ! | CTGATGGACATGCCTTTAGC+TGG | - | tig0027080:8957-8976 | Msa1432320:intron | 50.0% |
| ACCCAAAGCTGGAAGAGATG+GGG | - | tig0027080:9069-9088 | Msa1432320:CDS | 50.0% | |
| AACCTTGAATGTGTGCGCAG+CGG | + | tig0027080:9127-9146 | None:intergenic | 50.0% | |
| TGCGCACACATTCAAGGTTG+AGG | - | tig0027080:9128-9147 | Msa1432320:CDS | 50.0% | |
| TGCCCTTGTGGAACCATCCT+CGG | + | tig0027080:6738-6757 | None:intergenic | 55.0% | |
| !! | ATTGGGCTAGCCACGACAAG+AGG | - | tig0027080:6759-6778 | Msa1432320:CDS | 55.0% |
| GGATACCACACCGTACTCAG+CGG | - | tig0027080:7525-7544 | Msa1432320:CDS | 55.0% | |
| TTTGTGACACGCTGCCGAAC+CGG | - | tig0027080:7578-7597 | Msa1432320:intron | 55.0% | |
| CAACTCCGATCGTTGAGCCA+TGG | + | tig0027080:7854-7873 | None:intergenic | 55.0% | |
| TCCTTGAACCCTGCTATGGC+GGG | - | tig0027080:7981-8000 | Msa1432320:intron | 55.0% | |
| TGCAGAGGAAGCTCCTCTCA+TGG | - | tig0027080:8424-8443 | Msa1432320:intron | 55.0% | |
| CGCAACCTCGAATCTGTCTG+CGG | + | tig0027080:8522-8541 | None:intergenic | 55.0% | |
| CGTGCATGACATACTGCAGC+AGG | - | tig0027080:8543-8562 | Msa1432320:intron | 55.0% | |
| ! | CAATGCAGTCTCCGGTGTCA+TGG | + | tig0027080:8585-8604 | None:intergenic | 55.0% |
| GCAGCCAAGCAATACCTTGC+TGG | - | tig0027080:8665-8684 | Msa1432320:intron | 55.0% | |
| !! | ACGGCCAGCAAGGTATTGCT+TGG | + | tig0027080:8672-8691 | None:intergenic | 55.0% |
| ACTCACAGGTGATGAGCTGC+AGG | - | tig0027080:8992-9011 | Msa1432320:intron | 55.0% | |
| TGAGCTGCAGGTTGCATCTG+AGG | - | tig0027080:9004-9023 | Msa1432320:intron | 55.0% | |
| CCCCCATCTCTTCCAGCTTT+GGG | + | tig0027080:9073-9092 | None:intergenic | 55.0% | |
| CCCAAAGCTGGAAGAGATGG+GGG | - | tig0027080:9070-9089 | Msa1432320:CDS | 55.0% | |
| TCCCCCATCTCTTCCAGCTT+TGG | + | tig0027080:9074-9093 | None:intergenic | 55.0% | |
| ATCCGCTGCGCACACATTCA+AGG | - | tig0027080:9122-9141 | Msa1432320:CDS | 55.0% | |
| ACGCCGAGGATGGTTCCACA+AGG | - | tig0027080:6732-6751 | Msa1432320:CDS | 60.0% | |
| CGCCGAGGATGGTTCCACAA+GGG | - | tig0027080:6733-6752 | Msa1432320:CDS | 60.0% | |
| GCTAGCCCAATCTGCCCTTG+TGG | + | tig0027080:6750-6769 | None:intergenic | 60.0% | |
| TCCCGCCATAGCAGGGTTCA+AGG | + | tig0027080:7985-8004 | None:intergenic | 60.0% | |
| GATGGCCGCAGACAGATTCG+AGG | - | tig0027080:8514-8533 | Msa1432320:intron | 60.0% | |
| CATCAGCTCCTCCTGATGCC+TGG | + | tig0027080:8943-8962 | None:intergenic | 60.0% | |
| CAGGCATCAGGAGGAGCTGA+TGG | - | tig0027080:8941-8960 | Msa1432320:intron | 60.0% | |
| ACGGGCCCAATACCCAAAGC+TGG | - | tig0027080:9058-9077 | Msa1432320:CDS | 60.0% | |
| AGCGGGCAAGCTTTGCTTCG+AGG | + | tig0027080:9100-9119 | None:intergenic | 60.0% | |
| TGTGTGCGCAGCGGATGAAG+CGG | + | tig0027080:9118-9137 | None:intergenic | 60.0% | |
| ! | AGGTTGAGGCACCACATCGC+TGG | - | tig0027080:9142-9161 | Msa1432320:CDS | 60.0% |
| ! | TTGAGGCACCACATCGCTGG+CGG | - | tig0027080:9145-9164 | Msa1432320:CDS | 60.0% |
| GCTAGTATCCGCCAGCGATG+TGG | + | tig0027080:9156-9175 | None:intergenic | 60.0% | |
| GTGTGCGCAGCGGATGAAGC+GGG | + | tig0027080:9117-9136 | None:intergenic | 65.0% | |
| CGCTGCCGAACCGGACCATC+CGG | - | tig0027080:7587-7606 | Msa1432320:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0027080 | gene | 6555 | 9293 | 6555 | ID=Msa1432320;Name=Msa1432320 |
| tig0027080 | mRNA | 6555 | 9293 | 6555 | ID=Msa1432320-mRNA-1;Parent=Msa1432320;Name=Msa1432320-mRNA-1;_AED=0.03;_eAED=0.03;_QI=89|0.75|0.6|1|1|1|5|145|265 |
| tig0027080 | exon | 6555 | 6904 | 6555 | ID=Msa1432320-mRNA-1:exon:8034;Parent=Msa1432320-mRNA-1 |
| tig0027080 | exon | 7140 | 7419 | 7140 | ID=Msa1432320-mRNA-1:exon:8033;Parent=Msa1432320-mRNA-1 |
| tig0027080 | exon | 7510 | 7573 | 7510 | ID=Msa1432320-mRNA-1:exon:8032;Parent=Msa1432320-mRNA-1 |
| tig0027080 | exon | 7647 | 7729 | 7647 | ID=Msa1432320-mRNA-1:exon:8031;Parent=Msa1432320-mRNA-1 |
| tig0027080 | exon | 9039 | 9293 | 9039 | ID=Msa1432320-mRNA-1:exon:8030;Parent=Msa1432320-mRNA-1 |
| tig0027080 | five_prime_UTR | 9205 | 9293 | 9205 | ID=Msa1432320-mRNA-1:five_prime_utr;Parent=Msa1432320-mRNA-1 |
| tig0027080 | CDS | 9039 | 9204 | 9039 | ID=Msa1432320-mRNA-1:cds;Parent=Msa1432320-mRNA-1 |
| tig0027080 | CDS | 7647 | 7729 | 7647 | ID=Msa1432320-mRNA-1:cds;Parent=Msa1432320-mRNA-1 |
| tig0027080 | CDS | 7510 | 7573 | 7510 | ID=Msa1432320-mRNA-1:cds;Parent=Msa1432320-mRNA-1 |
| tig0027080 | CDS | 7140 | 7419 | 7140 | ID=Msa1432320-mRNA-1:cds;Parent=Msa1432320-mRNA-1 |
| tig0027080 | CDS | 6700 | 6904 | 6700 | ID=Msa1432320-mRNA-1:cds;Parent=Msa1432320-mRNA-1 |
| tig0027080 | three_prime_UTR | 6555 | 6699 | 6555 | ID=Msa1432320-mRNA-1:three_prime_utr;Parent=Msa1432320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
