AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1038010


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1038010 MtrunA17_Chr8g0347801 51.915 235 58 2 11 190 39 273 2.16e-69 220
Msa1038010 MtrunA17_Chr4g0046761 52.247 178 60 2 34 186 5 182 5.42e-52 165
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1038010 AT3G61600.1 73.881 134 35 0 57 190 146 279 3.72e-61 199
Msa1038010 AT3G61600.2 73.881 134 35 0 57 190 146 279 4.05e-61 199
Msa1038010 AT2G46260.1 72.388 134 37 0 57 190 144 277 9.05e-61 198
Msa1038010 AT4G01160.1 49.038 208 75 3 11 190 19 223 2.62e-46 159
Msa1038010 AT4G01160.2 43.478 230 77 3 11 190 19 245 1.42e-42 149

Find 43 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTCCTTCCAGTGTCTTGA+TGG 0.278274 7_1:-74775406 Msa1038010:CDS
TTGCGTGTATAAATTATTAT+AGG 0.280285 7_1:-74777408 Msa1038010:five_prime_UTR
GAGGACATCAAGAATGAAAA+TGG 0.348170 7_1:-74777235 Msa1038010:intron
GACCTCACCAATTGCATTGC+TGG 0.354612 7_1:-74775538 Msa1038010:CDS
CCAAGCAATACCTTGCTTGT+TGG 0.361675 7_1:-74775353 Msa1038010:CDS
TGCATTGCTGGATGTCTTGA+TGG 0.401371 7_1:-74775526 Msa1038010:CDS
CACCAGTATCTATCCATTCT+CGG 0.418747 7_1:-74777365 Msa1038010:CDS
TGGTTCCACAAGGGCAGATT+GGG 0.431076 7_1:-74777281 Msa1038010:CDS
ATCCGAGAATGGATAGATAC+TGG 0.440769 7_1:+74777363 None:intergenic
ATGGTTCCACAAGGGCAGAT+TGG 0.454058 7_1:-74777282 Msa1038010:CDS
AAAGAGACTAAGAGAGATGA+TGG 0.455924 7_1:+74777459 None:intergenic
CGTGCATGACATACTGCAGC+AGG 0.478713 7_1:-74775479 Msa1038010:CDS
CCAACAAGCAAGGTATTGCT+TGG 0.484457 7_1:+74775353 None:intergenic
CAATGCAGTCTCCGGTGTCA+TGG 0.488356 7_1:+74775440 None:intergenic
AAGACATCCAGCAATGCAAT+TGG 0.494046 7_1:+74775531 None:intergenic
TGAAGTATTCTATCCGAGAA+TGG 0.494218 7_1:+74777352 None:intergenic
TGCCCTTGTGGAACCATCCT+CGG 0.503341 7_1:+74777288 None:intergenic
AGGTAGAGCAATGCAGTCTC+CGG 0.521970 7_1:+74775432 None:intergenic
TGCTTGGCTGCATCTATCAA+CGG 0.526041 7_1:+74775369 None:intergenic
ACCGTGAGAATCACTGCATC+TGG 0.531887 7_1:-74775705 Msa1038010:intron
AATGCAGTCTCCGGTGTCAT+GGG 0.534326 7_1:+74775441 None:intergenic
TGCAGAGGAAGCTCCTCTCA+TGG 0.560844 7_1:-74775598 Msa1038010:intron
ACTCATTCTAACGCCGAGGA+TGG 0.576781 7_1:-74777301 Msa1038010:CDS
ATAATAATTTATACACGCAA+AGG 0.588504 7_1:+74777411 None:intergenic
TCAGCCATCAAGACACTGGA+AGG 0.588550 7_1:+74775402 None:intergenic
GATGGCCGCAGACAGATTCG+AGG 0.597081 7_1:-74775508 Msa1038010:CDS
GCTAGCCCAATCTGCCCTTG+TGG 0.603075 7_1:+74777276 None:intergenic
AGCATCAGCCATCAAGACAC+TGG 0.603828 7_1:+74775398 None:intergenic
AAGAGACTAAGAGAGATGAT+GGG 0.605712 7_1:+74777460 None:intergenic
ATTGGGCTAGCCACGACAAG+AGG 0.606487 7_1:-74777264 Msa1038010:CDS
AGACACTGGAAGGAAGCTCT+AGG 0.606850 7_1:+74775412 None:intergenic
GCAAAATATACCCATGACAC+CGG 0.631078 7_1:-74775451 Msa1038010:CDS
CACATGTTTACCAACAAGCA+AGG 0.637270 7_1:+74775343 None:intergenic
ATCCAGCAATGCAATTGGTG+AGG 0.643944 7_1:+74775536 None:intergenic
CCTCTCTTATCCTCTTGTCG+TGG 0.649947 7_1:+74777254 None:intergenic
AAATTCAGAAGCTCCATGAG+AGG 0.659074 7_1:+74775585 None:intergenic
ACCAGATGCAGTGATTCTCA+CGG 0.660940 7_1:+74775704 None:intergenic
ACGCCGAGGATGGTTCCACA+AGG 0.662886 7_1:-74777291 Msa1038010:CDS
CCACGACAAGAGGATAAGAG+AGG 0.664175 7_1:-74777254 Msa1038010:CDS
CGCAACCTCGAATCTGTCTG+CGG 0.683210 7_1:+74775503 None:intergenic
CGCCGAGGATGGTTCCACAA+GGG 0.684386 7_1:-74777290 Msa1038010:CDS
TGAAACTCATTCTAACGCCG+AGG 0.696384 7_1:-74777305 Msa1038010:CDS
GTGCATGACATACTGCAGCA+GGG 0.699994 7_1:-74775478 Msa1038010:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGTCATTTTTTATTTTTTT+TGG - chr7_1:74775842-74775861 Msa1038010:intron 10.0%
!!! AAAAAAAAAAAAACAAGTTT+TGG + chr7_1:74775938-74775957 None:intergenic 10.0%
!!! TTGTCATTTTTTATTTTTTT+TGG - chr7_1:74775842-74775861 Msa1038010:intron 10.0%
!!! AAAAAAAAAAAAACAAGTTT+TGG + chr7_1:74775938-74775957 None:intergenic 10.0%
!! AATTCACATATTATTATGTT+CGG + chr7_1:74776221-74776240 None:intergenic 15.0%
!! ATTATTTGTCAAATATTCAT+TGG - chr7_1:74776413-74776432 Msa1038010:intron 15.0%
!! AATTCACATATTATTATGTT+CGG + chr7_1:74776221-74776240 None:intergenic 15.0%
!! ATTATTTGTCAAATATTCAT+TGG - chr7_1:74776413-74776432 Msa1038010:intron 15.0%
!! ATAATAATTTATACACGCAA+AGG + chr7_1:74775410-74775429 None:intergenic 20.0%
!! TTGCGTGTATAAATTATTAT+AGG - chr7_1:74775410-74775429 Msa1038010:CDS 20.0%
!!! GTTTTATGTGTTTATGAAAA+TGG - chr7_1:74775723-74775742 Msa1038010:CDS 20.0%
!!! TTATATTCATGTCATTTTCT+AGG - chr7_1:74775892-74775911 Msa1038010:CDS 20.0%
!!! TATATTCATGTCATTTTCTA+GGG - chr7_1:74775893-74775912 Msa1038010:CDS 20.0%
!!! AAAAAACAAGTTTTGGTTTA+TGG + chr7_1:74775931-74775950 None:intergenic 20.0%
!!! TGTGAATTAGTTTTTCAAAA+TGG - chr7_1:74776233-74776252 Msa1038010:intron 20.0%
!! TTGACAAATAATCAATTTAC+CGG + chr7_1:74776405-74776424 None:intergenic 20.0%
!!! GATTTTTACAATAAATGTAC+AGG + chr7_1:74776454-74776473 None:intergenic 20.0%
!!! ATGTATAATTGCTTCTTTTT+TGG - chr7_1:74776834-74776853 Msa1038010:intron 20.0%
!! TTGAGTTATTATTAATGTAC+AGG - chr7_1:74776893-74776912 Msa1038010:intron 20.0%
!!! GAAAAGCTCATTTTTTAATA+AGG - chr7_1:74776976-74776995 Msa1038010:intron 20.0%
!! ATAATAATTTATACACGCAA+AGG + chr7_1:74775410-74775429 None:intergenic 20.0%
!! TTGCGTGTATAAATTATTAT+AGG - chr7_1:74775410-74775429 Msa1038010:CDS 20.0%
!!! GTTTTATGTGTTTATGAAAA+TGG - chr7_1:74775723-74775742 Msa1038010:CDS 20.0%
!!! TTATATTCATGTCATTTTCT+AGG - chr7_1:74775892-74775911 Msa1038010:CDS 20.0%
!!! TATATTCATGTCATTTTCTA+GGG - chr7_1:74775893-74775912 Msa1038010:CDS 20.0%
!!! AAAAAACAAGTTTTGGTTTA+TGG + chr7_1:74775931-74775950 None:intergenic 20.0%
!!! TGTGAATTAGTTTTTCAAAA+TGG - chr7_1:74776233-74776252 Msa1038010:intron 20.0%
!! TTGACAAATAATCAATTTAC+CGG + chr7_1:74776405-74776424 None:intergenic 20.0%
!!! GATTTTTACAATAAATGTAC+AGG + chr7_1:74776454-74776473 None:intergenic 20.0%
!!! ATGTATAATTGCTTCTTTTT+TGG - chr7_1:74776834-74776853 Msa1038010:intron 20.0%
!! TTGAGTTATTATTAATGTAC+AGG - chr7_1:74776893-74776912 Msa1038010:intron 20.0%
!!! GAAAAGCTCATTTTTTAATA+AGG - chr7_1:74776976-74776995 Msa1038010:intron 20.0%
! TCAAAAAACACAAAATGCAA+GGG + chr7_1:74775625-74775644 None:intergenic 25.0%
!!! TGTGTTTTTTGAGATAATAG+AGG - chr7_1:74775633-74775652 Msa1038010:intron 25.0%
!!! GTGTTTTTTGAGATAATAGA+GGG - chr7_1:74775634-74775653 Msa1038010:intron 25.0%
! TATACCATAACTTGACATTA+TGG - chr7_1:74775746-74775765 Msa1038010:CDS 25.0%
! TATACCATAATGTCAAGTTA+TGG + chr7_1:74775753-74775772 None:intergenic 25.0%
! GAAAATTATTGTGATTCATC+TGG - chr7_1:74775970-74775989 Msa1038010:intron 25.0%
!! ATACTTTCTCTAGAAAATAG+AGG - chr7_1:74776014-74776033 Msa1038010:intron 25.0%
!! TACTTTCTCTAGAAAATAGA+GGG - chr7_1:74776015-74776034 Msa1038010:intron 25.0%
! AAATCAAATGAACCGTATTA+AGG - chr7_1:74776070-74776089 Msa1038010:intron 25.0%
! AACTTAGATATGTCTTTCAA+AGG - chr7_1:74776144-74776163 Msa1038010:intron 25.0%
!! TATGGTTTTCGTGAAAAAAA+GGG + chr7_1:74776198-74776217 None:intergenic 25.0%
! ACATATTATTATGTTCGGTA+TGG + chr7_1:74776216-74776235 None:intergenic 25.0%
! TTTGTAACACATTACTAAAC+TGG - chr7_1:74776289-74776308 Msa1038010:intron 25.0%
!!! TTACTAAACTGGTTTTTCAA+CGG - chr7_1:74776300-74776319 Msa1038010:intron 25.0%
!! ATGATTTGTCAATCATTTGT+TGG + chr7_1:74776482-74776501 None:intergenic 25.0%
! TATTATTAATGTACAGGTGA+TGG - chr7_1:74776899-74776918 Msa1038010:intron 25.0%
!! CTTCTGAATTTTATGTACAA+CGG - chr7_1:74777245-74777264 Msa1038010:CDS 25.0%
! TCAAAAAACACAAAATGCAA+GGG + chr7_1:74775625-74775644 None:intergenic 25.0%
!!! TGTGTTTTTTGAGATAATAG+AGG - chr7_1:74775633-74775652 Msa1038010:intron 25.0%
!!! GTGTTTTTTGAGATAATAGA+GGG - chr7_1:74775634-74775653 Msa1038010:intron 25.0%
! TATACCATAACTTGACATTA+TGG - chr7_1:74775746-74775765 Msa1038010:CDS 25.0%
! TATACCATAATGTCAAGTTA+TGG + chr7_1:74775753-74775772 None:intergenic 25.0%
! GAAAATTATTGTGATTCATC+TGG - chr7_1:74775970-74775989 Msa1038010:intron 25.0%
!! ATACTTTCTCTAGAAAATAG+AGG - chr7_1:74776014-74776033 Msa1038010:intron 25.0%
!! TACTTTCTCTAGAAAATAGA+GGG - chr7_1:74776015-74776034 Msa1038010:intron 25.0%
! AAATCAAATGAACCGTATTA+AGG - chr7_1:74776070-74776089 Msa1038010:intron 25.0%
! AACTTAGATATGTCTTTCAA+AGG - chr7_1:74776144-74776163 Msa1038010:intron 25.0%
!! TATGGTTTTCGTGAAAAAAA+GGG + chr7_1:74776198-74776217 None:intergenic 25.0%
! ACATATTATTATGTTCGGTA+TGG + chr7_1:74776216-74776235 None:intergenic 25.0%
! TTTGTAACACATTACTAAAC+TGG - chr7_1:74776289-74776308 Msa1038010:intron 25.0%
!!! TTACTAAACTGGTTTTTCAA+CGG - chr7_1:74776300-74776319 Msa1038010:intron 25.0%
!! ATGATTTGTCAATCATTTGT+TGG + chr7_1:74776482-74776501 None:intergenic 25.0%
! TATTATTAATGTACAGGTGA+TGG - chr7_1:74776899-74776918 Msa1038010:intron 25.0%
!! CTTCTGAATTTTATGTACAA+CGG - chr7_1:74777245-74777264 Msa1038010:CDS 25.0%
CTCAAAAAACACAAAATGCA+AGG + chr7_1:74775626-74775645 None:intergenic 30.0%
GAGACATTATGTAACTTGAT+TGG - chr7_1:74775687-74775706 Msa1038010:intron 30.0%
GACAATAAAACACCATGTAA+GGG + chr7_1:74775797-74775816 None:intergenic 30.0%
TGACAATAAAACACCATGTA+AGG + chr7_1:74775798-74775817 None:intergenic 30.0%
!!! TGTCATTTTCTAGGGATATA+AGG - chr7_1:74775901-74775920 Msa1038010:CDS 30.0%
AGTTTGTGGAAACCTTAATA+CGG + chr7_1:74776085-74776104 None:intergenic 30.0%
! AAATGTTCCTTTTCAGTTTG+TGG + chr7_1:74776099-74776118 None:intergenic 30.0%
! GTATGGTTTTCGTGAAAAAA+AGG + chr7_1:74776199-74776218 None:intergenic 30.0%
CAAATAATCAATTTACCGGA+TGG + chr7_1:74776401-74776420 None:intergenic 30.0%
! ATTTGTCAATCATTTGTTGG+TGG + chr7_1:74776479-74776498 None:intergenic 30.0%
TTGACAAATCATCCCAATTT+CGG - chr7_1:74776490-74776509 Msa1038010:intron 30.0%
CTTAAAACCCCTGTTTAATT+TGG - chr7_1:74776563-74776582 Msa1038010:intron 30.0%
TAGAGCAAACAAATCTGATT+AGG + chr7_1:74777172-74777191 None:intergenic 30.0%
CTCAAAAAACACAAAATGCA+AGG + chr7_1:74775626-74775645 None:intergenic 30.0%
GAGACATTATGTAACTTGAT+TGG - chr7_1:74775687-74775706 Msa1038010:intron 30.0%
GACAATAAAACACCATGTAA+GGG + chr7_1:74775797-74775816 None:intergenic 30.0%
TGACAATAAAACACCATGTA+AGG + chr7_1:74775798-74775817 None:intergenic 30.0%
!!! TGTCATTTTCTAGGGATATA+AGG - chr7_1:74775901-74775920 Msa1038010:CDS 30.0%
AGTTTGTGGAAACCTTAATA+CGG + chr7_1:74776085-74776104 None:intergenic 30.0%
! AAATGTTCCTTTTCAGTTTG+TGG + chr7_1:74776099-74776118 None:intergenic 30.0%
! GTATGGTTTTCGTGAAAAAA+AGG + chr7_1:74776199-74776218 None:intergenic 30.0%
CAAATAATCAATTTACCGGA+TGG + chr7_1:74776401-74776420 None:intergenic 30.0%
! ATTTGTCAATCATTTGTTGG+TGG + chr7_1:74776479-74776498 None:intergenic 30.0%
TTGACAAATCATCCCAATTT+CGG - chr7_1:74776490-74776509 Msa1038010:intron 30.0%
CTTAAAACCCCTGTTTAATT+TGG - chr7_1:74776563-74776582 Msa1038010:intron 30.0%
TAGAGCAAACAAATCTGATT+AGG + chr7_1:74777172-74777191 None:intergenic 30.0%
AAGAGACTAAGAGAGATGAT+GGG + chr7_1:74775361-74775380 None:intergenic 35.0%
AAAGAGACTAAGAGAGATGA+TGG + chr7_1:74775362-74775381 None:intergenic 35.0%
! TGAAGTATTCTATCCGAGAA+TGG + chr7_1:74775469-74775488 None:intergenic 35.0%
GAGGACATCAAGAATGAAAA+TGG - chr7_1:74775583-74775602 Msa1038010:CDS 35.0%
AAAACACCATGTAAGGGTTT+AGG + chr7_1:74775791-74775810 None:intergenic 35.0%
TTATTGTGATTCATCTGGTG+TGG - chr7_1:74775975-74775994 Msa1038010:intron 35.0%
AAGGTTTCCACAAACTGAAA+AGG - chr7_1:74776089-74776108 Msa1038010:intron 35.0%
! TAGAGTAATCCAAAGCACTT+CGG + chr7_1:74776172-74776191 None:intergenic 35.0%
AATCAATATACCGCTGAGTA+CGG + chr7_1:74776334-74776353 None:intergenic 35.0%
TGACAAATCATCCCAATTTC+GGG - chr7_1:74776491-74776510 Msa1038010:intron 35.0%
CCTCTTAAATACCCGAAATT+GGG + chr7_1:74776505-74776524 None:intergenic 35.0%
TCCTCTTAAATACCCGAAAT+TGG + chr7_1:74776506-74776525 None:intergenic 35.0%
!! TGTGTTATTTGATCTTGCCA+TGG - chr7_1:74776630-74776649 Msa1038010:intron 35.0%
! GCAGATGTTTTACAAATGCA+GGG - chr7_1:74776720-74776739 Msa1038010:intron 35.0%
TGACTACATGTGTAAACTGT+TGG + chr7_1:74776815-74776834 None:intergenic 35.0%
! GGTAGATGTCTTTTCTTCAT+TGG - chr7_1:74776997-74777016 Msa1038010:intron 35.0%
! GATGTCTTTTCTTCATTGGT+TGG - chr7_1:74777001-74777020 Msa1038010:intron 35.0%
! ATGTTGCAGCTTTTCTCTAA+TGG - chr7_1:74777062-74777081 Msa1038010:intron 35.0%
! TGTTGCAGCTTTTCTCTAAT+GGG - chr7_1:74777063-74777082 Msa1038010:intron 35.0%
AAGAGACTAAGAGAGATGAT+GGG + chr7_1:74775361-74775380 None:intergenic 35.0%
AAAGAGACTAAGAGAGATGA+TGG + chr7_1:74775362-74775381 None:intergenic 35.0%
! TGAAGTATTCTATCCGAGAA+TGG + chr7_1:74775469-74775488 None:intergenic 35.0%
GAGGACATCAAGAATGAAAA+TGG - chr7_1:74775583-74775602 Msa1038010:CDS 35.0%
AAAACACCATGTAAGGGTTT+AGG + chr7_1:74775791-74775810 None:intergenic 35.0%
TTATTGTGATTCATCTGGTG+TGG - chr7_1:74775975-74775994 Msa1038010:intron 35.0%
AAGGTTTCCACAAACTGAAA+AGG - chr7_1:74776089-74776108 Msa1038010:intron 35.0%
! TAGAGTAATCCAAAGCACTT+CGG + chr7_1:74776172-74776191 None:intergenic 35.0%
AATCAATATACCGCTGAGTA+CGG + chr7_1:74776334-74776353 None:intergenic 35.0%
TGACAAATCATCCCAATTTC+GGG - chr7_1:74776491-74776510 Msa1038010:intron 35.0%
CCTCTTAAATACCCGAAATT+GGG + chr7_1:74776505-74776524 None:intergenic 35.0%
TCCTCTTAAATACCCGAAAT+TGG + chr7_1:74776506-74776525 None:intergenic 35.0%
!! TGTGTTATTTGATCTTGCCA+TGG - chr7_1:74776630-74776649 Msa1038010:intron 35.0%
! GCAGATGTTTTACAAATGCA+GGG - chr7_1:74776720-74776739 Msa1038010:intron 35.0%
TGACTACATGTGTAAACTGT+TGG + chr7_1:74776815-74776834 None:intergenic 35.0%
! GGTAGATGTCTTTTCTTCAT+TGG - chr7_1:74776997-74777016 Msa1038010:intron 35.0%
! GATGTCTTTTCTTCATTGGT+TGG - chr7_1:74777001-74777020 Msa1038010:intron 35.0%
! ATGTTGCAGCTTTTCTCTAA+TGG - chr7_1:74777062-74777081 Msa1038010:intron 35.0%
! TGTTGCAGCTTTTCTCTAAT+GGG - chr7_1:74777063-74777082 Msa1038010:intron 35.0%
CACCAGTATCTATCCATTCT+CGG - chr7_1:74775453-74775472 Msa1038010:CDS 40.0%
ATCCGAGAATGGATAGATAC+TGG + chr7_1:74775458-74775477 None:intergenic 40.0%
TTCTCTCCTAAACCCTTACA+TGG - chr7_1:74775782-74775801 Msa1038010:intron 40.0%
AATCAATTTACCGGATGGTC+CGG + chr7_1:74776396-74776415 None:intergenic 40.0%
! CCCAATTTCGGGTATTTAAG+AGG - chr7_1:74776502-74776521 Msa1038010:intron 40.0%
TGTGTATTACTTTGATGCCC+CGG + chr7_1:74776532-74776551 None:intergenic 40.0%
AATGACACAAGTTCAAGTCG+TGG - chr7_1:74776685-74776704 Msa1038010:intron 40.0%
! CGCAGATGTTTTACAAATGC+AGG - chr7_1:74776719-74776738 Msa1038010:intron 40.0%
!! TCTCCATAATGGACTCACAA+TGG - chr7_1:74776744-74776763 Msa1038010:intron 40.0%
GATCCATTGTGAGTCCATTA+TGG + chr7_1:74776750-74776769 None:intergenic 40.0%
! AAAATGAGCTTTTCGCAGTC+AGG + chr7_1:74776970-74776989 None:intergenic 40.0%
! AGCTTTTCTCTAATGGGATG+CGG - chr7_1:74777069-74777088 Msa1038010:intron 40.0%
AAATTCAGAAGCTCCATGAG+AGG + chr7_1:74777236-74777255 None:intergenic 40.0%
AAGACATCCAGCAATGCAAT+TGG + chr7_1:74777290-74777309 None:intergenic 40.0%
GCAAAATATACCCATGACAC+CGG - chr7_1:74777367-74777386 Msa1038010:CDS 40.0%
CACCAGTATCTATCCATTCT+CGG - chr7_1:74775453-74775472 Msa1038010:CDS 40.0%
ATCCGAGAATGGATAGATAC+TGG + chr7_1:74775458-74775477 None:intergenic 40.0%
TTCTCTCCTAAACCCTTACA+TGG - chr7_1:74775782-74775801 Msa1038010:intron 40.0%
AATCAATTTACCGGATGGTC+CGG + chr7_1:74776396-74776415 None:intergenic 40.0%
! CCCAATTTCGGGTATTTAAG+AGG - chr7_1:74776502-74776521 Msa1038010:intron 40.0%
TGTGTATTACTTTGATGCCC+CGG + chr7_1:74776532-74776551 None:intergenic 40.0%
AATGACACAAGTTCAAGTCG+TGG - chr7_1:74776685-74776704 Msa1038010:intron 40.0%
! CGCAGATGTTTTACAAATGC+AGG - chr7_1:74776719-74776738 Msa1038010:intron 40.0%
!! TCTCCATAATGGACTCACAA+TGG - chr7_1:74776744-74776763 Msa1038010:intron 40.0%
GATCCATTGTGAGTCCATTA+TGG + chr7_1:74776750-74776769 None:intergenic 40.0%
! AAAATGAGCTTTTCGCAGTC+AGG + chr7_1:74776970-74776989 None:intergenic 40.0%
! AGCTTTTCTCTAATGGGATG+CGG - chr7_1:74777069-74777088 Msa1038010:intron 40.0%
AAATTCAGAAGCTCCATGAG+AGG + chr7_1:74777236-74777255 None:intergenic 40.0%
AAGACATCCAGCAATGCAAT+TGG + chr7_1:74777290-74777309 None:intergenic 40.0%
GCAAAATATACCCATGACAC+CGG - chr7_1:74777367-74777386 Msa1038010:CDS 40.0%
TGAAACTCATTCTAACGCCG+AGG - chr7_1:74775513-74775532 Msa1038010:CDS 45.0%
CGGGTATTTAAGAGGAGAAC+CGG - chr7_1:74776510-74776529 Msa1038010:intron 45.0%
GGGTATTTAAGAGGAGAACC+GGG - chr7_1:74776511-74776530 Msa1038010:intron 45.0%
GGTATTTAAGAGGAGAACCG+GGG - chr7_1:74776512-74776531 Msa1038010:intron 45.0%
CGCTAGGCCAAATTAAACAG+GGG + chr7_1:74776573-74776592 None:intergenic 45.0%
CCGCTAGGCCAAATTAAACA+GGG + chr7_1:74776574-74776593 None:intergenic 45.0%
!! CCCTGTTTAATTTGGCCTAG+CGG - chr7_1:74776571-74776590 Msa1038010:intron 45.0%
AAATGCAGGGCTCTCCATAA+TGG - chr7_1:74776733-74776752 Msa1038010:intron 45.0%
AGCAGGGTTCAAGGAAAGAT+CGG + chr7_1:74776772-74776791 None:intergenic 45.0%
TCTTTCCTTGAACCCTGCTA+TGG - chr7_1:74776773-74776792 Msa1038010:intron 45.0%
ATAAAACTCCCGCCATAGCA+GGG + chr7_1:74776788-74776807 None:intergenic 45.0%
TATAAAACTCCCGCCATAGC+AGG + chr7_1:74776789-74776808 None:intergenic 45.0%
! GCTTTTCTCTAATGGGATGC+GGG - chr7_1:74777070-74777089 Msa1038010:intron 45.0%
! CTTTTCTCTAATGGGATGCG+GGG - chr7_1:74777071-74777090 Msa1038010:intron 45.0%
! TTTTCTCTAATGGGATGCGG+GGG - chr7_1:74777072-74777091 Msa1038010:intron 45.0%
ACCAGATGCAGTGATTCTCA+CGG + chr7_1:74777117-74777136 None:intergenic 45.0%
GTTTCTCTTGCATGTTGCAG+AGG - chr7_1:74777205-74777224 Msa1038010:intron 45.0%
ATCCAGCAATGCAATTGGTG+AGG + chr7_1:74777285-74777304 None:intergenic 45.0%
TGCATTGCTGGATGTCTTGA+TGG - chr7_1:74777292-74777311 Msa1038010:CDS 45.0%
TGCTTGGCTGCATCTATCAA+CGG + chr7_1:74777452-74777471 None:intergenic 45.0%
!! CCAACAAGCAAGGTATTGCT+TGG + chr7_1:74777468-74777487 None:intergenic 45.0%
CCAAGCAATACCTTGCTTGT+TGG - chr7_1:74777465-74777484 Msa1038010:five_prime_UTR 45.0%
TGAAACTCATTCTAACGCCG+AGG - chr7_1:74775513-74775532 Msa1038010:CDS 45.0%
CGGGTATTTAAGAGGAGAAC+CGG - chr7_1:74776510-74776529 Msa1038010:intron 45.0%
GGGTATTTAAGAGGAGAACC+GGG - chr7_1:74776511-74776530 Msa1038010:intron 45.0%
GGTATTTAAGAGGAGAACCG+GGG - chr7_1:74776512-74776531 Msa1038010:intron 45.0%
CGCTAGGCCAAATTAAACAG+GGG + chr7_1:74776573-74776592 None:intergenic 45.0%
CCGCTAGGCCAAATTAAACA+GGG + chr7_1:74776574-74776593 None:intergenic 45.0%
!! CCCTGTTTAATTTGGCCTAG+CGG - chr7_1:74776571-74776590 Msa1038010:intron 45.0%
AAATGCAGGGCTCTCCATAA+TGG - chr7_1:74776733-74776752 Msa1038010:intron 45.0%
AGCAGGGTTCAAGGAAAGAT+CGG + chr7_1:74776772-74776791 None:intergenic 45.0%
TCTTTCCTTGAACCCTGCTA+TGG - chr7_1:74776773-74776792 Msa1038010:intron 45.0%
ATAAAACTCCCGCCATAGCA+GGG + chr7_1:74776788-74776807 None:intergenic 45.0%
TATAAAACTCCCGCCATAGC+AGG + chr7_1:74776789-74776808 None:intergenic 45.0%
! GCTTTTCTCTAATGGGATGC+GGG - chr7_1:74777070-74777089 Msa1038010:intron 45.0%
! CTTTTCTCTAATGGGATGCG+GGG - chr7_1:74777071-74777090 Msa1038010:intron 45.0%
! TTTTCTCTAATGGGATGCGG+GGG - chr7_1:74777072-74777091 Msa1038010:intron 45.0%
ACCAGATGCAGTGATTCTCA+CGG + chr7_1:74777117-74777136 None:intergenic 45.0%
GTTTCTCTTGCATGTTGCAG+AGG - chr7_1:74777205-74777224 Msa1038010:intron 45.0%
ATCCAGCAATGCAATTGGTG+AGG + chr7_1:74777285-74777304 None:intergenic 45.0%
TGCATTGCTGGATGTCTTGA+TGG - chr7_1:74777292-74777311 Msa1038010:CDS 45.0%
TGCTTGGCTGCATCTATCAA+CGG + chr7_1:74777452-74777471 None:intergenic 45.0%
!! CCAACAAGCAAGGTATTGCT+TGG + chr7_1:74777468-74777487 None:intergenic 45.0%
CCAAGCAATACCTTGCTTGT+TGG - chr7_1:74777465-74777484 Msa1038010:five_prime_UTR 45.0%
ACTCATTCTAACGCCGAGGA+TGG - chr7_1:74775517-74775536 Msa1038010:CDS 50.0%
ATGGTTCCACAAGGGCAGAT+TGG - chr7_1:74775536-74775555 Msa1038010:CDS 50.0%
TGGTTCCACAAGGGCAGATT+GGG - chr7_1:74775537-74775556 Msa1038010:CDS 50.0%
CCTCTCTTATCCTCTTGTCG+TGG + chr7_1:74775567-74775586 None:intergenic 50.0%
CCACGACAAGAGGATAAGAG+AGG - chr7_1:74775564-74775583 Msa1038010:CDS 50.0%
!! TCAAAGGTGCCGAAGTGCTT+TGG - chr7_1:74776160-74776179 Msa1038010:intron 50.0%
ATATACCGCTGAGTACGGTG+TGG + chr7_1:74776329-74776348 None:intergenic 50.0%
ATTTACCGGATGGTCCGGTT+CGG + chr7_1:74776391-74776410 None:intergenic 50.0%
! TATTCATTGGTTGCGCGCAG+CGG - chr7_1:74776426-74776445 Msa1038010:intron 50.0%
GCCGCTAGGCCAAATTAAAC+AGG + chr7_1:74776575-74776594 None:intergenic 50.0%
!! TCAGATTTGAAAGCGCCGCT+AGG + chr7_1:74776589-74776608 None:intergenic 50.0%
TCTTGCCATGGCTCAACGAT+CGG - chr7_1:74776642-74776661 Msa1038010:intron 50.0%
TTCCTTGAACCCTGCTATGG+CGG - chr7_1:74776776-74776795 Msa1038010:intron 50.0%
ACCGTGAGAATCACTGCATC+TGG - chr7_1:74777113-74777132 Msa1038010:intron 50.0%
GACCTCACCAATTGCATTGC+TGG - chr7_1:74777280-74777299 Msa1038010:CDS 50.0%
GTGCATGACATACTGCAGCA+GGG - chr7_1:74777340-74777359 Msa1038010:CDS 50.0%
!! AATGCAGTCTCCGGTGTCAT+GGG + chr7_1:74777380-74777399 None:intergenic 50.0%
AGGTAGAGCAATGCAGTCTC+CGG + chr7_1:74777389-74777408 None:intergenic 50.0%
AGACACTGGAAGGAAGCTCT+AGG + chr7_1:74777409-74777428 None:intergenic 50.0%
GCTTCCTTCCAGTGTCTTGA+TGG - chr7_1:74777412-74777431 Msa1038010:five_prime_UTR 50.0%
TCAGCCATCAAGACACTGGA+AGG + chr7_1:74777419-74777438 None:intergenic 50.0%
AGCATCAGCCATCAAGACAC+TGG + chr7_1:74777423-74777442 None:intergenic 50.0%
ACTCATTCTAACGCCGAGGA+TGG - chr7_1:74775517-74775536 Msa1038010:CDS 50.0%
ATGGTTCCACAAGGGCAGAT+TGG - chr7_1:74775536-74775555 Msa1038010:CDS 50.0%
TGGTTCCACAAGGGCAGATT+GGG - chr7_1:74775537-74775556 Msa1038010:CDS 50.0%
CCTCTCTTATCCTCTTGTCG+TGG + chr7_1:74775567-74775586 None:intergenic 50.0%
CCACGACAAGAGGATAAGAG+AGG - chr7_1:74775564-74775583 Msa1038010:CDS 50.0%
!! TCAAAGGTGCCGAAGTGCTT+TGG - chr7_1:74776160-74776179 Msa1038010:intron 50.0%
ATATACCGCTGAGTACGGTG+TGG + chr7_1:74776329-74776348 None:intergenic 50.0%
ATTTACCGGATGGTCCGGTT+CGG + chr7_1:74776391-74776410 None:intergenic 50.0%
! TATTCATTGGTTGCGCGCAG+CGG - chr7_1:74776426-74776445 Msa1038010:intron 50.0%
GCCGCTAGGCCAAATTAAAC+AGG + chr7_1:74776575-74776594 None:intergenic 50.0%
!! TCAGATTTGAAAGCGCCGCT+AGG + chr7_1:74776589-74776608 None:intergenic 50.0%
TCTTGCCATGGCTCAACGAT+CGG - chr7_1:74776642-74776661 Msa1038010:intron 50.0%
TTCCTTGAACCCTGCTATGG+CGG - chr7_1:74776776-74776795 Msa1038010:intron 50.0%
ACCGTGAGAATCACTGCATC+TGG - chr7_1:74777113-74777132 Msa1038010:intron 50.0%
GACCTCACCAATTGCATTGC+TGG - chr7_1:74777280-74777299 Msa1038010:CDS 50.0%
GTGCATGACATACTGCAGCA+GGG - chr7_1:74777340-74777359 Msa1038010:CDS 50.0%
!! AATGCAGTCTCCGGTGTCAT+GGG + chr7_1:74777380-74777399 None:intergenic 50.0%
AGGTAGAGCAATGCAGTCTC+CGG + chr7_1:74777389-74777408 None:intergenic 50.0%
AGACACTGGAAGGAAGCTCT+AGG + chr7_1:74777409-74777428 None:intergenic 50.0%
GCTTCCTTCCAGTGTCTTGA+TGG - chr7_1:74777412-74777431 Msa1038010:five_prime_UTR 50.0%
TCAGCCATCAAGACACTGGA+AGG + chr7_1:74777419-74777438 None:intergenic 50.0%
AGCATCAGCCATCAAGACAC+TGG + chr7_1:74777423-74777442 None:intergenic 50.0%
TGCCCTTGTGGAACCATCCT+CGG + chr7_1:74775533-74775552 None:intergenic 55.0%
!! ATTGGGCTAGCCACGACAAG+AGG - chr7_1:74775554-74775573 Msa1038010:CDS 55.0%
GGATACCACACCGTACTCAG+CGG - chr7_1:74776321-74776340 Msa1038010:intron 55.0%
TTTGTGACACGCTGCCGAAC+CGG - chr7_1:74776374-74776393 Msa1038010:intron 55.0%
CAACTCCGATCGTTGAGCCA+TGG + chr7_1:74776650-74776669 None:intergenic 55.0%
TCCTTGAACCCTGCTATGGC+GGG - chr7_1:74776777-74776796 Msa1038010:intron 55.0%
TGCAGAGGAAGCTCCTCTCA+TGG - chr7_1:74777220-74777239 Msa1038010:intron 55.0%
CGCAACCTCGAATCTGTCTG+CGG + chr7_1:74777318-74777337 None:intergenic 55.0%
CGTGCATGACATACTGCAGC+AGG - chr7_1:74777339-74777358 Msa1038010:CDS 55.0%
! CAATGCAGTCTCCGGTGTCA+TGG + chr7_1:74777381-74777400 None:intergenic 55.0%
TGCCCTTGTGGAACCATCCT+CGG + chr7_1:74775533-74775552 None:intergenic 55.0%
!! ATTGGGCTAGCCACGACAAG+AGG - chr7_1:74775554-74775573 Msa1038010:CDS 55.0%
GGATACCACACCGTACTCAG+CGG - chr7_1:74776321-74776340 Msa1038010:intron 55.0%
TTTGTGACACGCTGCCGAAC+CGG - chr7_1:74776374-74776393 Msa1038010:intron 55.0%
CAACTCCGATCGTTGAGCCA+TGG + chr7_1:74776650-74776669 None:intergenic 55.0%
TCCTTGAACCCTGCTATGGC+GGG - chr7_1:74776777-74776796 Msa1038010:intron 55.0%
TGCAGAGGAAGCTCCTCTCA+TGG - chr7_1:74777220-74777239 Msa1038010:intron 55.0%
CGCAACCTCGAATCTGTCTG+CGG + chr7_1:74777318-74777337 None:intergenic 55.0%
CGTGCATGACATACTGCAGC+AGG - chr7_1:74777339-74777358 Msa1038010:CDS 55.0%
! CAATGCAGTCTCCGGTGTCA+TGG + chr7_1:74777381-74777400 None:intergenic 55.0%
ACGCCGAGGATGGTTCCACA+AGG - chr7_1:74775527-74775546 Msa1038010:CDS 60.0%
CGCCGAGGATGGTTCCACAA+GGG - chr7_1:74775528-74775547 Msa1038010:CDS 60.0%
GCTAGCCCAATCTGCCCTTG+TGG + chr7_1:74775545-74775564 None:intergenic 60.0%
TCCCGCCATAGCAGGGTTCA+AGG + chr7_1:74776781-74776800 None:intergenic 60.0%
TCTAATGGGATGCGGGGGTC+AGG - chr7_1:74777077-74777096 Msa1038010:intron 60.0%
CTAATGGGATGCGGGGGTCA+GGG - chr7_1:74777078-74777097 Msa1038010:intron 60.0%
GATGGCCGCAGACAGATTCG+AGG - chr7_1:74777310-74777329 Msa1038010:CDS 60.0%
ACGCCGAGGATGGTTCCACA+AGG - chr7_1:74775527-74775546 Msa1038010:CDS 60.0%
CGCCGAGGATGGTTCCACAA+GGG - chr7_1:74775528-74775547 Msa1038010:CDS 60.0%
GCTAGCCCAATCTGCCCTTG+TGG + chr7_1:74775545-74775564 None:intergenic 60.0%
TCCCGCCATAGCAGGGTTCA+AGG + chr7_1:74776781-74776800 None:intergenic 60.0%
TCTAATGGGATGCGGGGGTC+AGG - chr7_1:74777077-74777096 Msa1038010:intron 60.0%
CTAATGGGATGCGGGGGTCA+GGG - chr7_1:74777078-74777097 Msa1038010:intron 60.0%
GATGGCCGCAGACAGATTCG+AGG - chr7_1:74777310-74777329 Msa1038010:CDS 60.0%
CGCTGCCGAACCGGACCATC+CGG - chr7_1:74776383-74776402 Msa1038010:intron 70.0%
CGCTGCCGAACCGGACCATC+CGG - chr7_1:74776383-74776402 Msa1038010:intron 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 74775350 74777490 74775350 ID=Msa1038010;Name=Msa1038010
chr7_1 mRNA 74775350 74777490 74775350 ID=Msa1038010-mRNA-1;Parent=Msa1038010;Name=Msa1038010-mRNA-1;_AED=0.20;_eAED=0.20;_QI=89|0.66|0.5|0.75|1|1|4|0|192
chr7_1 exon 74775350 74775615 74775350 ID=Msa1038010-mRNA-1:exon:18913;Parent=Msa1038010-mRNA-1
chr7_1 exon 74775706 74775769 74775706 ID=Msa1038010-mRNA-1:exon:18912;Parent=Msa1038010-mRNA-1
chr7_1 exon 74775843 74775925 74775843 ID=Msa1038010-mRNA-1:exon:18911;Parent=Msa1038010-mRNA-1
chr7_1 exon 74777236 74777490 74777236 ID=Msa1038010-mRNA-1:exon:18910;Parent=Msa1038010-mRNA-1
chr7_1 five_prime_UTR 74777402 74777490 74777402 ID=Msa1038010-mRNA-1:five_prime_utr;Parent=Msa1038010-mRNA-1
chr7_1 CDS 74777236 74777401 74777236 ID=Msa1038010-mRNA-1:cds;Parent=Msa1038010-mRNA-1
chr7_1 CDS 74775843 74775925 74775843 ID=Msa1038010-mRNA-1:cds;Parent=Msa1038010-mRNA-1
chr7_1 CDS 74775706 74775769 74775706 ID=Msa1038010-mRNA-1:cds;Parent=Msa1038010-mRNA-1
chr7_1 CDS 74775350 74775615 74775350 ID=Msa1038010-mRNA-1:cds;Parent=Msa1038010-mRNA-1
Gene Sequence

>Msa1038010

ATGAAGAATCTTCACACCAGTATCTATCCATTCTCGGATAGAATACTTCAAATTGAAGTCATTGACGATTCAATTGAAACTCATTCTAACGCCGAGGATGGTTCCACAAGGGCAGATTGGGCTAGCCACGACAAGAGGATAAGAGAGGACATCAAGAATGAAAATGGTGATGGCTCTGCAGCTGTCAGAGACATTACTATGCATGTTAGCTCTTCTATCCTGACTGCGAAAAGCTCATTTTTTAATAAGCTTTTCTCTAATGGGATGCGGGGGTCAGGGCAAAGACATGTGACCGTGAGAATCACTGCATCTGAGGAAGCTCCTCTCATGGAGCTTCTGAATTTTATGTACAACGGTACTCTGAACGTGACCTCACCAATTGCATTGCTGGATGTCTTGATGGCCGCAGACAGATTCGAGGTTGCGTCGTGCATGACATACTGCAGCAGGGTATTGCAAAATATACCCATGACACCGGAGACTGCATTGCTCTACCTAGAGCTTCCTTCCAGTGTCTTGATGGCTGATGCTGTTAAGCCGTTGATAGATGCAGCCAAGCAATACCTTGCTTGTTGGTAA

Protein sequence

>Msa1038010

MKNLHTSIYPFSDRILQIEVIDDSIETHSNAEDGSTRADWASHDKRIREDIKNENGDGSAAVRDITMHVSSSILTAKSSFFNKLFSNGMRGSGQRHVTVRITASEEAPLMELLNFMYNGTLNVTSPIALLDVLMAADRFEVASCMTYCSRVLQNIPMTPETALLYLELPSSVLMADAVKPLIDAAKQYLACW*