Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0690120 | XP_013456565.1 | 100.000 | 272 | 0 | 0 | 1 | 272 | 1 | 272 | 0.0 | 555 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0690120 | sp|P48583|ERD21_CAEEL | 34.722 | 216 | 122 | 5 | 47 | 258 | 2 | 202 | 2.33e-31 | 118 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0690120 | I3SDS4 | 100.000 | 272 | 0 | 0 | 1 | 272 | 1 | 272 | 0.0 | 555 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0038350 | Msa0690120 | 0.806537 | 7.838373e-50 | -8.615850e-47 |
| Msa0690120 | Msa0968320 | 0.803588 | 3.245563e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0690120 | MtrunA17_Chr4g0038571 | 100.000 | 272 | 0 | 0 | 1 | 272 | 1 | 272 | 0.0 | 555 |
| Msa0690120 | MtrunA17_Chr3g0142691 | 83.088 | 272 | 46 | 0 | 1 | 272 | 1 | 272 | 1.18e-172 | 477 |
| Msa0690120 | MtrunA17_Chr8g0339351 | 49.077 | 271 | 135 | 3 | 1 | 268 | 1 | 271 | 1.06e-84 | 254 |
| Msa0690120 | MtrunA17_Chr8g0339421 | 53.061 | 196 | 91 | 1 | 74 | 268 | 65 | 260 | 4.28e-70 | 217 |
| Msa0690120 | MtrunA17_Chr8g0339401 | 55.625 | 160 | 70 | 1 | 98 | 256 | 1 | 160 | 8.03e-62 | 192 |
| Msa0690120 | MtrunA17_Chr7g0235941 | 34.061 | 229 | 130 | 8 | 47 | 269 | 2 | 215 | 4.25e-26 | 102 |
| Msa0690120 | MtrunA17_Chr8g0379591 | 35.965 | 228 | 127 | 9 | 47 | 269 | 2 | 215 | 1.43e-25 | 100 |
| Msa0690120 | MtrunA17_Chr8g0339371 | 50.725 | 69 | 34 | 0 | 75 | 143 | 16 | 84 | 3.49e-16 | 72.0 |
| Msa0690120 | MtrunA17_Chr8g0339391 | 40.789 | 76 | 44 | 1 | 1 | 75 | 1 | 76 | 6.81e-14 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0690120 | AT2G21190.1 | 89.552 | 268 | 28 | 0 | 5 | 272 | 2 | 269 | 0.0 | 498 |
| Msa0690120 | AT4G38790.1 | 88.806 | 268 | 30 | 0 | 5 | 272 | 6 | 273 | 8.18e-179 | 493 |
| Msa0690120 | AT1G75760.1 | 85.662 | 272 | 39 | 0 | 1 | 272 | 1 | 272 | 7.72e-176 | 486 |
| Msa0690120 | AT1G19970.1 | 80.147 | 272 | 54 | 0 | 1 | 272 | 1 | 272 | 2.36e-169 | 469 |
| Msa0690120 | AT1G75760.2 | 85.547 | 256 | 37 | 0 | 1 | 256 | 1 | 256 | 6.78e-165 | 457 |
| Msa0690120 | AT1G75760.3 | 85.185 | 216 | 32 | 0 | 1 | 216 | 1 | 216 | 5.78e-137 | 385 |
| Msa0690120 | AT1G19970.2 | 75.983 | 229 | 51 | 1 | 1 | 229 | 1 | 225 | 5.43e-132 | 373 |
| Msa0690120 | AT3G25160.1 | 61.194 | 268 | 103 | 1 | 2 | 268 | 4 | 271 | 2.08e-121 | 348 |
| Msa0690120 | AT3G25040.1 | 34.934 | 229 | 128 | 9 | 47 | 269 | 2 | 215 | 2.68e-29 | 110 |
| Msa0690120 | AT1G29330.1 | 35.371 | 229 | 127 | 10 | 47 | 269 | 2 | 215 | 3.33e-28 | 107 |
| Msa0690120 | AT1G29330.2 | 35.172 | 145 | 81 | 5 | 125 | 269 | 22 | 153 | 9.04e-18 | 78.6 |
Find 99 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCCTTGGGGTATGGTTTA+TGG | 0.172228 | 4_4:+57556418 | Msa0690120:CDS |
| CGAGGTACCGTTATTTATTA+TGG | 0.248467 | 4_4:+57556840 | Msa0690120:three_prime_UTR |
| GTTCTTCTCTTTCTCTTTGT+TGG | 0.263833 | 4_4:-57553818 | None:intergenic |
| CTGTGCTCATTGGGTTCTTC+AGG | 0.282833 | 4_4:+57555857 | Msa0690120:CDS |
| CATTCACACCATACTTGATT+TGG | 0.298660 | 4_4:+57554673 | Msa0690120:CDS |
| CTGGGCATTCTGTGTATATC+TGG | 0.298963 | 4_4:+57555631 | Msa0690120:CDS |
| CTCAAGTTCTACCGAGTCTT+AGG | 0.306962 | 4_4:+57556930 | Msa0690120:three_prime_UTR |
| AAAATATAGCTGTCAATTCC+TGG | 0.317259 | 4_4:-57554610 | None:intergenic |
| AACGAGCGTGCGTAGCGTTA+AGG | 0.347944 | 4_4:-57553891 | None:intergenic |
| GGACATTTGTTGGTTGCCTT+GGG | 0.362241 | 4_4:+57556405 | Msa0690120:CDS |
| GATTCTTAAGCTGTGCTCAT+TGG | 0.373170 | 4_4:+57555847 | Msa0690120:CDS |
| TGGACATTTGTTGGTTGCCT+TGG | 0.385662 | 4_4:+57556404 | Msa0690120:CDS |
| ATTCTTAAGCTGTGCTCATT+GGG | 0.386910 | 4_4:+57555848 | Msa0690120:CDS |
| ACTTAATCAGGCATCATGTT+TGG | 0.392971 | 4_4:+57556712 | Msa0690120:three_prime_UTR |
| ACGAGCGTGCGTAGCGTTAA+GGG | 0.404316 | 4_4:-57553890 | None:intergenic |
| GCGAGAAAAGCCTTGACCTT+TGG | 0.406284 | 4_4:-57553989 | None:intergenic |
| GACATGTTTATTCTGTTCCT+TGG | 0.407029 | 4_4:+57556769 | Msa0690120:three_prime_UTR |
| CTTCTCATCATATATTGAAC+AGG | 0.417454 | 4_4:+57555603 | Msa0690120:CDS |
| GAAAGTCGCCAAATCAAGTA+TGG | 0.428500 | 4_4:-57554681 | None:intergenic |
| TTGTTGGTTGCCTTGGGGTA+TGG | 0.433590 | 4_4:+57556411 | Msa0690120:CDS |
| GCTGAAGCTGTTCACTCGCT+TGG | 0.434191 | 4_4:+57554085 | Msa0690120:CDS |
| CTTGGTGGAAGTGTAAAGTT+GGG | 0.439821 | 4_4:+57556787 | Msa0690120:three_prime_UTR |
| CTCTTTGTTGGCCTAAGCGT+GGG | 0.440450 | 4_4:-57553806 | None:intergenic |
| AGATACCCGTGGACATTTGT+TGG | 0.440531 | 4_4:+57556395 | Msa0690120:CDS |
| AATCTGCTAAGATGAATGTT+TGG | 0.442427 | 4_4:-57556470 | None:intergenic |
| CTTGTTCTACGCCTTCCCTC+TGG | 0.447485 | 4_4:+57556647 | Msa0690120:CDS |
| CCAATCCTTGTCCCACGCTT+AGG | 0.449080 | 4_4:+57553795 | Msa0690120:five_prime_UTR |
| CCTAAGCGTGGGACAAGGAT+TGG | 0.450001 | 4_4:-57553795 | None:intergenic |
| AATATATGATGAGAAGTTGA+TGG | 0.451706 | 4_4:-57555596 | None:intergenic |
| CGTGATCATGAACGATAAAT+CGG | 0.455398 | 4_4:-57554045 | None:intergenic |
| AGAAAAGCCTTGACCTTTGG+TGG | 0.458499 | 4_4:-57553986 | None:intergenic |
| GCGTGGATCGATGTTCTTTG+AGG | 0.459043 | 4_4:-57553938 | None:intergenic |
| TTCTACCGAGTCTTAGGTTG+TGG | 0.461994 | 4_4:+57556936 | Msa0690120:three_prime_UTR |
| TCTCGCCGTCGTTTCCGGTA+TGG | 0.465041 | 4_4:+57554006 | Msa0690120:CDS |
| GTACCGTTATTTATTATGGT+TGG | 0.473594 | 4_4:+57556844 | Msa0690120:three_prime_UTR |
| ACGCCATCTCCACATGGGTC+AGG | 0.477787 | 4_4:+57553957 | Msa0690120:CDS |
| TGTTCTGCATGACCCGCAGT+TGG | 0.489763 | 4_4:-57555673 | None:intergenic |
| GGATCTATAGATTTGAGAGA+AGG | 0.497240 | 4_4:-57553770 | None:intergenic |
| GTTCTGCATGACCCGCAGTT+GGG | 0.500169 | 4_4:-57555672 | None:intergenic |
| GAGAACAAGAGCGGCCATAC+CGG | 0.503947 | 4_4:-57554020 | None:intergenic |
| ATGAAGGAGAAGACTTGTGC+TGG | 0.507531 | 4_4:+57554133 | Msa0690120:CDS |
| GATCTATAGATTTGAGAGAA+GGG | 0.511032 | 4_4:-57553769 | None:intergenic |
| TAAATTGAAGGCGAGTTACA+TGG | 0.511519 | 4_4:+57554739 | Msa0690120:CDS |
| CCTTGGTGGAAGTGTAAAGT+TGG | 0.514039 | 4_4:+57556786 | Msa0690120:three_prime_UTR |
| GACTTTCGTGACCACGGTGT+GGG | 0.516892 | 4_4:+57554697 | Msa0690120:CDS |
| TCTCTTTGTTGGCCTAAGCG+TGG | 0.518914 | 4_4:-57553807 | None:intergenic |
| ATGTTTATTCTGTTCCTTGG+TGG | 0.519416 | 4_4:+57556772 | Msa0690120:three_prime_UTR |
| TCGCCTGACCCATGTGGAGA+TGG | 0.520457 | 4_4:-57553960 | None:intergenic |
| GTATGGTTTATGGCCGTCGA+TGG | 0.522435 | 4_4:+57556428 | Msa0690120:CDS |
| TAACTTTGCAATTTACTATG+TGG | 0.522735 | 4_4:+57554772 | Msa0690120:CDS |
| GATGAAACAAAACACCCAAC+GGG | 0.524176 | 4_4:-57553739 | None:intergenic |
| TCTGTTACTATTATGTCAAG+AGG | 0.527285 | 4_4:+57556493 | Msa0690120:CDS |
| AAATATAGCTGTCAATTCCT+GGG | 0.533077 | 4_4:-57554609 | None:intergenic |
| CGATCCACGCCATCTCCACA+TGG | 0.539860 | 4_4:+57553951 | Msa0690120:CDS |
| CGACTTTCGTGACCACGGTG+TGG | 0.547169 | 4_4:+57554696 | Msa0690120:CDS |
| GGCGAGTTACATGGAGGAGA+AGG | 0.550641 | 4_4:+57554748 | Msa0690120:CDS |
| AATACGTAATGAGCAGTGAA+TGG | 0.555239 | 4_4:-57555807 | None:intergenic |
| TTTCCAACCATAATAAATAA+CGG | 0.555690 | 4_4:-57556847 | None:intergenic |
| TTCAGTTCTACCCCAACTGC+GGG | 0.557419 | 4_4:+57555661 | Msa0690120:CDS |
| TTCTGCATGACCCGCAGTTG+GGG | 0.562015 | 4_4:-57555671 | None:intergenic |
| CTCGGTAGAACTTGAGCATG+TGG | 0.573852 | 4_4:-57556923 | None:intergenic |
| AGGATTATCACTCAAATCCC+AGG | 0.579664 | 4_4:+57554592 | Msa0690120:intron |
| AATGTACTCTAAGTCTAACA+TGG | 0.583674 | 4_4:-57556739 | None:intergenic |
| AGCAAGGCTAACACGGCACA+TGG | 0.585861 | 4_4:-57555566 | None:intergenic |
| AGCGGCCATACCGGAAACGA+CGG | 0.593225 | 4_4:-57554011 | None:intergenic |
| TTTCAGTTCTACCCCAACTG+CGG | 0.594339 | 4_4:+57555660 | Msa0690120:CDS |
| GCTCATTACGTATTTGCACT+CGG | 0.595466 | 4_4:+57555816 | Msa0690120:CDS |
| ATGAATGAGCAAGGCTAACA+CGG | 0.596304 | 4_4:-57555573 | None:intergenic |
| GCACAAGAACAAGACAAAGA+TGG | 0.597587 | 4_4:-57553840 | None:intergenic |
| TCTTATCTATAAACTCATGA+AGG | 0.599329 | 4_4:+57554117 | Msa0690120:CDS |
| GTTGGCCTAAGCGTGGGACA+AGG | 0.599380 | 4_4:-57553800 | None:intergenic |
| AGCGTGGGACAAGGATTGGA+AGG | 0.600237 | 4_4:-57553791 | None:intergenic |
| TGCAATCACACCACTCCAGA+GGG | 0.600263 | 4_4:-57556662 | None:intergenic |
| GGCAACCAACAAATGTCCAC+GGG | 0.610059 | 4_4:-57556400 | None:intergenic |
| TGACCCATGTGGAGATGGCG+TGG | 0.610245 | 4_4:-57553955 | None:intergenic |
| AGGCAACCAACAAATGTCCA+CGG | 0.615244 | 4_4:-57556401 | None:intergenic |
| GCGACAACCACCAAAGGTCA+AGG | 0.619702 | 4_4:+57553979 | Msa0690120:CDS |
| AGATGAAACAAAACACCCAA+CGG | 0.625280 | 4_4:-57553740 | None:intergenic |
| TCTACGCCTTCCCTCTGGAG+TGG | 0.628133 | 4_4:+57556652 | Msa0690120:CDS |
| GGTCAGGCGACAACCACCAA+AGG | 0.628509 | 4_4:+57553973 | Msa0690120:CDS |
| ATCACACCACTCCAGAGGGA+AGG | 0.629698 | 4_4:-57556658 | None:intergenic |
| GACATTTGTTGGTTGCCTTG+GGG | 0.633865 | 4_4:+57556406 | Msa0690120:CDS |
| ATGTACTCTAAGTCTAACAT+GGG | 0.634914 | 4_4:-57556738 | None:intergenic |
| AGTTGATGGATGAATGAGCA+AGG | 0.649423 | 4_4:-57555582 | None:intergenic |
| CTGCAATCACACCACTCCAG+AGG | 0.651756 | 4_4:-57556663 | None:intergenic |
| TTTGGCGACTTTCGTGACCA+CGG | 0.658314 | 4_4:+57554691 | Msa0690120:CDS |
| CGGCCATAAACCATACCCCA+AGG | 0.668614 | 4_4:-57556421 | None:intergenic |
| ATAGACCACAACCTAAGACT+CGG | 0.683423 | 4_4:-57556941 | None:intergenic |
| GATCCACGCCATCTCCACAT+GGG | 0.685742 | 4_4:+57553952 | Msa0690120:CDS |
| CCAACTTTACACTTCCACCA+AGG | 0.692281 | 4_4:-57556786 | None:intergenic |
| GATCATGAACGATAAATCGG+AGG | 0.692285 | 4_4:-57554042 | None:intergenic |
| TCTGAGATAAGAACCATCGA+CGG | 0.702119 | 4_4:-57556441 | None:intergenic |
| AATCATCATCAACAACGATG+AGG | 0.711765 | 4_4:+57553915 | Msa0690120:exon |
| AAATCGGAGGAGAACAAGAG+CGG | 0.713382 | 4_4:-57554029 | None:intergenic |
| TTGGTGGAAGTGTAAAGTTG+GGG | 0.713404 | 4_4:+57556788 | Msa0690120:three_prime_UTR |
| ATTGAAGGCGAGTTACATGG+AGG | 0.718937 | 4_4:+57554742 | Msa0690120:CDS |
| TGGTTGTCGCCTGACCCATG+TGG | 0.729979 | 4_4:-57553966 | None:intergenic |
| GCGGGTCATGCAGAACACCA+AGG | 0.742034 | 4_4:+57555679 | Msa0690120:CDS |
| CATGTATATAACCCACACCG+TGG | 0.775290 | 4_4:-57554708 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAGAATTGAATTTTTT+TGG | + | chr4_4:57554187-57554206 | Msa0690120:intron | 10.0% |
| !!! | ATATATTTTTCTTTTGAAAA+TGG | + | chr4_4:57555531-57555550 | Msa0690120:intron | 10.0% |
| !! | AAAAATAGTAAAAACAAATT+AGG | - | chr4_4:57556530-57556549 | None:intergenic | 10.0% |
| !! | TGATTGATAAAACATAAAAA+GGG | - | chr4_4:57554280-57554299 | None:intergenic | 15.0% |
| !! | TTGATTGATAAAACATAAAA+AGG | - | chr4_4:57554281-57554300 | None:intergenic | 15.0% |
| !!! | TTTTATGTTTTATCAATCAA+AGG | + | chr4_4:57554281-57554300 | Msa0690120:intron | 15.0% |
| !! | AAAAAACATAAAACATTACA+TGG | + | chr4_4:57554340-57554359 | Msa0690120:intron | 15.0% |
| !! | AAAAACATAAAACATTACAT+GGG | + | chr4_4:57554341-57554360 | Msa0690120:intron | 15.0% |
| !!! | ATGAAAAAGATCAATTTTTT+GGG | + | chr4_4:57554366-57554385 | Msa0690120:intron | 15.0% |
| !! | ACACAAAAATATTATTGATA+AGG | - | chr4_4:57554840-57554859 | None:intergenic | 15.0% |
| !! | AATAATATGATTATGAAATC+TGG | + | chr4_4:57555111-57555130 | Msa0690120:intron | 15.0% |
| !! | GCAATTAAATAAATATCATT+AGG | - | chr4_4:57556609-57556628 | None:intergenic | 15.0% |
| !!! | ATTTTCTTTTTAACTTAATC+AGG | + | chr4_4:57556700-57556719 | Msa0690120:three_prime_UTR | 15.0% |
| !!! | TTTGAATCTTTTTGTTTTCT+TGG | + | chr4_4:57554223-57554242 | Msa0690120:intron | 20.0% |
| !!! | TTGAATCTTTTTGTTTTCTT+GGG | + | chr4_4:57554224-57554243 | Msa0690120:intron | 20.0% |
| !! | GATTGATAAAACATAAAAAG+GGG | - | chr4_4:57554279-57554298 | None:intergenic | 20.0% |
| !!! | AGGTTAGATTTTTTAATAAC+TGG | + | chr4_4:57554301-57554320 | Msa0690120:intron | 20.0% |
| !!! | CATGAAAAAGATCAATTTTT+TGG | + | chr4_4:57554365-57554384 | Msa0690120:intron | 20.0% |
| !! | ATTGCTCTTAAAAAATTACA+TGG | + | chr4_4:57554425-57554444 | Msa0690120:intron | 20.0% |
| !! | TTGCTCTTAAAAAATTACAT+GGG | + | chr4_4:57554426-57554445 | Msa0690120:intron | 20.0% |
| !!! | CAATAATATTTTTGTGTCAA+TGG | + | chr4_4:57554843-57554862 | Msa0690120:intron | 20.0% |
| !!! | CATTTTTTCCTACTTTTTTA+TGG | + | chr4_4:57554871-57554890 | Msa0690120:intron | 20.0% |
| !! | AGAACAAATAGTTAAAGATT+CGG | - | chr4_4:57555034-57555053 | None:intergenic | 20.0% |
| !! | AATCATATTATTCATGCAAA+AGG | - | chr4_4:57555103-57555122 | None:intergenic | 20.0% |
| !! | TAAATTATTCCTCTTTCTAA+AGG | + | chr4_4:57555459-57555478 | Msa0690120:intron | 20.0% |
| !! | AAAATATATCAAGCTGATAA+TGG | - | chr4_4:57555520-57555539 | None:intergenic | 20.0% |
| !!! | TTATTTAATTGCAGTGTTTT+CGG | + | chr4_4:57556617-57556636 | Msa0690120:intron | 20.0% |
| !! | AAGTTAAAAAGAAAATGTGA+GGG | - | chr4_4:57556696-57556715 | None:intergenic | 20.0% |
| !! | TAAGTTAAAAAGAAAATGTG+AGG | - | chr4_4:57556697-57556716 | None:intergenic | 20.0% |
| !!! | CTAAATATATTTTATGTTCG+AGG | + | chr4_4:57556822-57556841 | Msa0690120:three_prime_UTR | 20.0% |
| !! | TTTCCAACCATAATAAATAA+CGG | - | chr4_4:57556850-57556869 | None:intergenic | 20.0% |
| ! | TCTTATCTATAAACTCATGA+AGG | + | chr4_4:57554117-57554136 | Msa0690120:CDS | 25.0% |
| !!! | TTTTTTGTGTAAAATCGAAG+GGG | - | chr4_4:57554173-57554192 | None:intergenic | 25.0% |
| !!! | CTTTTTTGTGTAAAATCGAA+GGG | - | chr4_4:57554174-57554193 | None:intergenic | 25.0% |
| !!! | TCTTTTTTGTGTAAAATCGA+AGG | - | chr4_4:57554175-57554194 | None:intergenic | 25.0% |
| !! | AGATTTTTATCCCTTTAGAT+TGG | + | chr4_4:57554401-57554420 | Msa0690120:intron | 25.0% |
| !!! | GTTAATTTGATTTGTGTTTG+TGG | + | chr4_4:57554467-57554486 | Msa0690120:intron | 25.0% |
| !!! | TTGGCTTAATGTGTTATTTT+TGG | + | chr4_4:57554490-57554509 | Msa0690120:intron | 25.0% |
| !!! | GTTTGTTTTTGTTTTGATGA+TGG | + | chr4_4:57554553-57554572 | Msa0690120:intron | 25.0% |
| !!! | CATGATTCGTTTTAAATTGA+AGG | + | chr4_4:57554727-57554746 | Msa0690120:CDS | 25.0% |
| ! | TAACTTTGCAATTTACTATG+TGG | + | chr4_4:57554772-57554791 | Msa0690120:CDS | 25.0% |
| !! | TTTAGGATGAAACAAACAAT+TGG | - | chr4_4:57554804-57554823 | None:intergenic | 25.0% |
| ! | AAGGCAATGCTTATAAATTT+AGG | - | chr4_4:57554821-57554840 | None:intergenic | 25.0% |
| ! | CATCTTTACCATAAAAAAGT+AGG | - | chr4_4:57554882-57554901 | None:intergenic | 25.0% |
| ! | ATGCAAAAGGAAATTTGAAT+CGG | - | chr4_4:57555090-57555109 | None:intergenic | 25.0% |
| ! | TATTCAAATATGATTGCATC+AGG | - | chr4_4:57555377-57555396 | None:intergenic | 25.0% |
| ! | GATGCAATCATATTTGAATA+CGG | + | chr4_4:57555377-57555396 | Msa0690120:intron | 25.0% |
| ! | AATATATGATGAGAAGTTGA+TGG | - | chr4_4:57555599-57555618 | None:intergenic | 25.0% |
| !! | ATATATTGAACAGGATTTTC+TGG | + | chr4_4:57555612-57555631 | Msa0690120:CDS | 25.0% |
| !! | TATATTGAACAGGATTTTCT+GGG | + | chr4_4:57555613-57555632 | Msa0690120:CDS | 25.0% |
| ! | ACAAAATGAAACAATTCAGA+AGG | - | chr4_4:57555770-57555789 | None:intergenic | 25.0% |
| ! | GTTAGTTATAAATATGCAAC+TGG | - | chr4_4:57555926-57555945 | None:intergenic | 25.0% |
| ! | TAATTAGGAGATTACAGATT+CGG | - | chr4_4:57556188-57556207 | None:intergenic | 25.0% |
| ! | AGAAATAGTATGTTAGTAGA+AGG | - | chr4_4:57556362-57556381 | None:intergenic | 25.0% |
| ! | GAAATATCTTAAGTCACTAT+CGG | - | chr4_4:57556564-57556583 | None:intergenic | 25.0% |
| GATCTATAGATTTGAGAGAA+GGG | - | chr4_4:57553772-57553791 | None:intergenic | 30.0% | |
| ! | TTTTTGTGTAAAATCGAAGG+GGG | - | chr4_4:57554172-57554191 | None:intergenic | 30.0% |
| TTTCTTGGGTCTTTGTTAAT+TGG | + | chr4_4:57554238-57554257 | Msa0690120:intron | 30.0% | |
| TTCTTGGGTCTTTGTTAATT+GGG | + | chr4_4:57554239-57554258 | Msa0690120:intron | 30.0% | |
| CTTAAAAAATTACATGGGTC+AGG | + | chr4_4:57554431-57554450 | Msa0690120:intron | 30.0% | |
| !! | ATTTGATTTGTGTTTGTGGT+TGG | + | chr4_4:57554471-57554490 | Msa0690120:intron | 30.0% |
| ATGGTTATGAATGATGTAAC+AGG | + | chr4_4:57554572-57554591 | Msa0690120:intron | 30.0% | |
| AAATATAGCTGTCAATTCCT+GGG | - | chr4_4:57554612-57554631 | None:intergenic | 30.0% | |
| AAAATATAGCTGTCAATTCC+TGG | - | chr4_4:57554613-57554632 | None:intergenic | 30.0% | |
| !!! | CAGCTATATTTTTAGCTGTT+AGG | + | chr4_4:57554621-57554640 | Msa0690120:CDS | 30.0% |
| TATTTACCCAGGTTATTCTA+TGG | - | chr4_4:57555139-57555158 | None:intergenic | 30.0% | |
| ATACTATTCAGTATTTACCC+AGG | - | chr4_4:57555150-57555169 | None:intergenic | 30.0% | |
| TAACAAGCTATCATGCAAAA+TGG | + | chr4_4:57555182-57555201 | Msa0690120:intron | 30.0% | |
| TTATTACTAACCTGCAACAT+TGG | + | chr4_4:57555210-57555229 | Msa0690120:intron | 30.0% | |
| !!! | TGATTGCATCAGGTTTTATT+TGG | - | chr4_4:57555367-57555386 | None:intergenic | 30.0% |
| ! | AAAATCAAGCCTTTAGAAAG+AGG | - | chr4_4:57555471-57555490 | None:intergenic | 30.0% |
| !! | ATATATCAAGCTGATAATGG+TGG | - | chr4_4:57555517-57555536 | None:intergenic | 30.0% |
| !! | TTTCTTTTGAAAATGGTTGC+AGG | + | chr4_4:57555538-57555557 | Msa0690120:intron | 30.0% |
| CTTCTCATCATATATTGAAC+AGG | + | chr4_4:57555603-57555622 | Msa0690120:CDS | 30.0% | |
| GGCGTTAAAAATTTATACCT+TGG | - | chr4_4:57555699-57555718 | None:intergenic | 30.0% | |
| ! | AGGTATAAATTTTTAACGCC+AGG | + | chr4_4:57555699-57555718 | Msa0690120:intron | 30.0% |
| TATGTCCATCATCTAATGTA+TGG | + | chr4_4:57555725-57555744 | Msa0690120:intron | 30.0% | |
| ATGTCCATCATCTAATGTAT+GGG | + | chr4_4:57555726-57555745 | Msa0690120:intron | 30.0% | |
| ! | TAAATATGCAACTGGATTAG+AGG | - | chr4_4:57555918-57555937 | None:intergenic | 30.0% |
| !!! | ACAGCTAAGCCATTTTTTAA+AGG | + | chr4_4:57556040-57556059 | Msa0690120:intron | 30.0% |
| TATCTTTCACATTACAGACA+AGG | - | chr4_4:57556152-57556171 | None:intergenic | 30.0% | |
| AATTAGGAGATTACAGATTC+GGG | - | chr4_4:57556187-57556206 | None:intergenic | 30.0% | |
| TGTTACAATGTTTGTGTCTT+TGG | + | chr4_4:57556226-57556245 | Msa0690120:intron | 30.0% | |
| ! | ACATCTTATTGATAGTCATC+TGG | + | chr4_4:57556263-57556282 | Msa0690120:intron | 30.0% |
| ! | CATCTTATTGATAGTCATCT+GGG | + | chr4_4:57556264-57556283 | Msa0690120:intron | 30.0% |
| ! | AACATACTATTTCTTGCATC+AGG | + | chr4_4:57556368-57556387 | Msa0690120:intron | 30.0% |
| AATCTGCTAAGATGAATGTT+TGG | - | chr4_4:57556473-57556492 | None:intergenic | 30.0% | |
| TCTGTTACTATTATGTCAAG+AGG | + | chr4_4:57556493-57556512 | Msa0690120:CDS | 30.0% | |
| ATGTACTCTAAGTCTAACAT+GGG | - | chr4_4:57556741-57556760 | None:intergenic | 30.0% | |
| AATGTACTCTAAGTCTAACA+TGG | - | chr4_4:57556742-57556761 | None:intergenic | 30.0% | |
| GTACCGTTATTTATTATGGT+TGG | + | chr4_4:57556844-57556863 | Msa0690120:three_prime_UTR | 30.0% | |
| GGATCTATAGATTTGAGAGA+AGG | - | chr4_4:57553773-57553792 | None:intergenic | 35.0% | |
| GTTCTTCTCTTTCTCTTTGT+TGG | - | chr4_4:57553821-57553840 | None:intergenic | 35.0% | |
| AATCATCATCAACAACGATG+AGG | + | chr4_4:57553915-57553934 | Msa0690120:exon | 35.0% | |
| CGTGATCATGAACGATAAAT+CGG | - | chr4_4:57554048-57554067 | None:intergenic | 35.0% | |
| AAGAGCAATGCCAATCTAAA+GGG | - | chr4_4:57554414-57554433 | None:intergenic | 35.0% | |
| TAAGAGCAATGCCAATCTAA+AGG | - | chr4_4:57554415-57554434 | None:intergenic | 35.0% | |
| ATGGGTCAGGAAAAATTACA+TGG | + | chr4_4:57554444-57554463 | Msa0690120:intron | 35.0% | |
| TGGGTCAGGAAAAATTACAT+GGG | + | chr4_4:57554445-57554464 | Msa0690120:intron | 35.0% | |
| !!! | GCTGTATTGTAGTTTTGTCA+TGG | + | chr4_4:57554643-57554662 | Msa0690120:CDS | 35.0% |
| CATTCACACCATACTTGATT+TGG | + | chr4_4:57554673-57554692 | Msa0690120:CDS | 35.0% | |
| TAAATTGAAGGCGAGTTACA+TGG | + | chr4_4:57554739-57554758 | Msa0690120:CDS | 35.0% | |
| !! | TTATTTGGTGATGTGTCACT+TGG | - | chr4_4:57555352-57555371 | None:intergenic | 35.0% |
| AAAAGAAGAGGGGGTTTAAA+AGG | - | chr4_4:57555407-57555426 | None:intergenic | 35.0% | |
| AGTACAGGACTAAAAGAAGA+GGG | - | chr4_4:57555418-57555437 | None:intergenic | 35.0% | |
| ! | TAAGAATATGCAGAGAGTAC+AGG | - | chr4_4:57555433-57555452 | None:intergenic | 35.0% |
| AGATCCCATACATTAGATGA+TGG | - | chr4_4:57555733-57555752 | None:intergenic | 35.0% | |
| AATACGTAATGAGCAGTGAA+TGG | - | chr4_4:57555810-57555829 | None:intergenic | 35.0% | |
| ATTCTTAAGCTGTGCTCATT+GGG | + | chr4_4:57555848-57555867 | Msa0690120:CDS | 35.0% | |
| ATATTCCACTCCTTGATCAA+CGG | - | chr4_4:57555969-57555988 | None:intergenic | 35.0% | |
| ! | CACAGGTTGCCTTTAAAAAA+TGG | - | chr4_4:57556052-57556071 | None:intergenic | 35.0% |
| GACACAAACATTGTAACAGA+TGG | - | chr4_4:57556224-57556243 | None:intergenic | 35.0% | |
| ATATCATTAGGACAACAGCA+CGG | - | chr4_4:57556597-57556616 | None:intergenic | 35.0% | |
| ! | TTTAATTGCAGTGTTTTCGG+AGG | + | chr4_4:57556620-57556639 | Msa0690120:intron | 35.0% |
| ACTTAATCAGGCATCATGTT+TGG | + | chr4_4:57556712-57556731 | Msa0690120:three_prime_UTR | 35.0% | |
| GACATGTTTATTCTGTTCCT+TGG | + | chr4_4:57556769-57556788 | Msa0690120:three_prime_UTR | 35.0% | |
| ATGTTTATTCTGTTCCTTGG+TGG | + | chr4_4:57556772-57556791 | Msa0690120:three_prime_UTR | 35.0% | |
| !! | CGAGGTACCGTTATTTATTA+TGG | + | chr4_4:57556840-57556859 | Msa0690120:three_prime_UTR | 35.0% |
| GCACAAGAACAAGACAAAGA+TGG | - | chr4_4:57553843-57553862 | None:intergenic | 40.0% | |
| ! | AGCGTTAAGGGTTTTCTTTG+AGG | - | chr4_4:57553881-57553900 | None:intergenic | 40.0% |
| GATCATGAACGATAAATCGG+AGG | - | chr4_4:57554045-57554064 | None:intergenic | 40.0% | |
| TGGGTCTTTGTTAATTGGGT+AGG | + | chr4_4:57554243-57554262 | Msa0690120:intron | 40.0% | |
| AGGATTATCACTCAAATCCC+AGG | + | chr4_4:57554592-57554611 | Msa0690120:intron | 40.0% | |
| GAAAGTCGCCAAATCAAGTA+TGG | - | chr4_4:57554684-57554703 | None:intergenic | 40.0% | |
| TGTATACTACCATTGCACAC+AGG | - | chr4_4:57554987-57555006 | None:intergenic | 40.0% | |
| TCTGGATCCATAGAATAACC+TGG | + | chr4_4:57555129-57555148 | Msa0690120:intron | 40.0% | |
| CTGGATCCATAGAATAACCT+GGG | + | chr4_4:57555130-57555149 | Msa0690120:intron | 40.0% | |
| ATATGCCTGCATACTAGAGT+AGG | + | chr4_4:57555266-57555285 | Msa0690120:intron | 40.0% | |
| TATGCCTGCATACTAGAGTA+GGG | + | chr4_4:57555267-57555286 | Msa0690120:intron | 40.0% | |
| CAGCATGCACATGATTTACT+AGG | + | chr4_4:57555306-57555325 | Msa0690120:intron | 40.0% | |
| !! | CTTGGTTCTATTGCAAGAAG+AGG | - | chr4_4:57555334-57555353 | None:intergenic | 40.0% |
| TACAGGACTAAAAGAAGAGG+GGG | - | chr4_4:57555416-57555435 | None:intergenic | 40.0% | |
| GTACAGGACTAAAAGAAGAG+GGG | - | chr4_4:57555417-57555436 | None:intergenic | 40.0% | |
| GAGTACAGGACTAAAAGAAG+AGG | - | chr4_4:57555419-57555438 | None:intergenic | 40.0% | |
| !! | ATCAAGCTGATAATGGTGGA+AGG | - | chr4_4:57555513-57555532 | None:intergenic | 40.0% |
| ATGAATGAGCAAGGCTAACA+CGG | - | chr4_4:57555576-57555595 | None:intergenic | 40.0% | |
| !! | AGTTGATGGATGAATGAGCA+AGG | - | chr4_4:57555585-57555604 | None:intergenic | 40.0% |
| !! | TAGATGATGGACATAGATCC+TGG | - | chr4_4:57555720-57555739 | None:intergenic | 40.0% |
| GCTCATTACGTATTTGCACT+CGG | + | chr4_4:57555816-57555835 | Msa0690120:CDS | 40.0% | |
| GATTCTTAAGCTGTGCTCAT+TGG | + | chr4_4:57555847-57555866 | Msa0690120:CDS | 40.0% | |
| GGGAAAGACGACTCAAAAAA+TGG | - | chr4_4:57555948-57555967 | None:intergenic | 40.0% | |
| TATTCCACTCCTTGATCAAC+GGG | - | chr4_4:57555968-57555987 | None:intergenic | 40.0% | |
| GACTACAACACATGCACAAT+GGG | - | chr4_4:57556107-57556126 | None:intergenic | 40.0% | |
| AGACTACAACACATGCACAA+TGG | - | chr4_4:57556108-57556127 | None:intergenic | 40.0% | |
| GGAGTTGCTGTCATGTAATT+AGG | - | chr4_4:57556203-57556222 | None:intergenic | 40.0% | |
| AGGTTACAAAACCAGAGAGT+TGG | - | chr4_4:57556314-57556333 | None:intergenic | 40.0% | |
| !!! | CTCTGGTTTTGTAACCTTCT+TGG | + | chr4_4:57556317-57556336 | Msa0690120:intron | 40.0% |
| TGTTAGTAGAAGGAGACATG+CGG | - | chr4_4:57556352-57556371 | None:intergenic | 40.0% | |
| ! | TCTGAGATAAGAACCATCGA+CGG | - | chr4_4:57556444-57556463 | None:intergenic | 40.0% |
| ! | CTTGGTGGAAGTGTAAAGTT+GGG | + | chr4_4:57556787-57556806 | Msa0690120:three_prime_UTR | 40.0% |
| ! | TTGGTGGAAGTGTAAAGTTG+GGG | + | chr4_4:57556788-57556807 | Msa0690120:three_prime_UTR | 40.0% |
| ATAGACCACAACCTAAGACT+CGG | - | chr4_4:57556944-57556963 | None:intergenic | 40.0% | |
| AGAAAAGCCTTGACCTTTGG+TGG | - | chr4_4:57553989-57554008 | None:intergenic | 45.0% | |
| AAATCGGAGGAGAACAAGAG+CGG | - | chr4_4:57554032-57554051 | None:intergenic | 45.0% | |
| ATGAAGGAGAAGACTTGTGC+TGG | + | chr4_4:57554133-57554152 | Msa0690120:CDS | 45.0% | |
| CATGTATATAACCCACACCG+TGG | - | chr4_4:57554711-57554730 | None:intergenic | 45.0% | |
| ATTGAAGGCGAGTTACATGG+AGG | + | chr4_4:57554742-57554761 | Msa0690120:CDS | 45.0% | |
| GATATGTCACCTGTGTGCAA+TGG | + | chr4_4:57554975-57554994 | Msa0690120:intron | 45.0% | |
| ATAAGCGCAACCAATGTTGC+AGG | - | chr4_4:57555223-57555242 | None:intergenic | 45.0% | |
| TGCATACTAGAGTAGGGTCT+GGG | + | chr4_4:57555273-57555292 | Msa0690120:intron | 45.0% | |
| CTGGGCATTCTGTGTATATC+TGG | + | chr4_4:57555631-57555650 | Msa0690120:CDS | 45.0% | |
| TTTCAGTTCTACCCCAACTG+CGG | + | chr4_4:57555660-57555679 | Msa0690120:CDS | 45.0% | |
| !! | GCTCTAAAGCTCTTGCCATT+TGG | + | chr4_4:57556071-57556090 | Msa0690120:intron | 45.0% |
| ! | AAAGCTCTTGCCATTTGGTG+AGG | + | chr4_4:57556076-57556095 | Msa0690120:intron | 45.0% |
| ! | CAACACATGCACAATGGGTT+TGG | - | chr4_4:57556102-57556121 | None:intergenic | 45.0% |
| !!! | CTGTTTTTGCACCAACTCTC+TGG | + | chr4_4:57556300-57556319 | Msa0690120:intron | 45.0% |
| TGCGGTTACAGAATCCAAGA+AGG | - | chr4_4:57556334-57556353 | None:intergenic | 45.0% | |
| !!! | CATCAGGTTTTAGATACCCG+TGG | + | chr4_4:57556384-57556403 | Msa0690120:intron | 45.0% |
| AGATACCCGTGGACATTTGT+TGG | + | chr4_4:57556395-57556414 | Msa0690120:CDS | 45.0% | |
| AGGCAACCAACAAATGTCCA+CGG | - | chr4_4:57556404-57556423 | None:intergenic | 45.0% | |
| ! | TGGACATTTGTTGGTTGCCT+TGG | + | chr4_4:57556404-57556423 | Msa0690120:CDS | 45.0% |
| ! | GGACATTTGTTGGTTGCCTT+GGG | + | chr4_4:57556405-57556424 | Msa0690120:CDS | 45.0% |
| ! | GACATTTGTTGGTTGCCTTG+GGG | + | chr4_4:57556406-57556425 | Msa0690120:CDS | 45.0% |
| TTGCCTTGGGGTATGGTTTA+TGG | + | chr4_4:57556418-57556437 | Msa0690120:CDS | 45.0% | |
| CCAACTTTACACTTCCACCA+AGG | - | chr4_4:57556789-57556808 | None:intergenic | 45.0% | |
| ! | CCTTGGTGGAAGTGTAAAGT+TGG | + | chr4_4:57556786-57556805 | Msa0690120:three_prime_UTR | 45.0% |
| CTCAAGTTCTACCGAGTCTT+AGG | + | chr4_4:57556930-57556949 | Msa0690120:three_prime_UTR | 45.0% | |
| ! | TTCTACCGAGTCTTAGGTTG+TGG | + | chr4_4:57556936-57556955 | Msa0690120:three_prime_UTR | 45.0% |
| ! | CTCTTTGTTGGCCTAAGCGT+GGG | - | chr4_4:57553809-57553828 | None:intergenic | 50.0% |
| ! | TCTCTTTGTTGGCCTAAGCG+TGG | - | chr4_4:57553810-57553829 | None:intergenic | 50.0% |
| GCGTGGATCGATGTTCTTTG+AGG | - | chr4_4:57553941-57553960 | None:intergenic | 50.0% | |
| GCGAGAAAAGCCTTGACCTT+TGG | - | chr4_4:57553992-57554011 | None:intergenic | 50.0% | |
| TTTGGCGACTTTCGTGACCA+CGG | + | chr4_4:57554691-57554710 | Msa0690120:CDS | 50.0% | |
| CAGACCCTACTCTAGTATGC+AGG | - | chr4_4:57555274-57555293 | None:intergenic | 50.0% | |
| CTGCATACTAGAGTAGGGTC+TGG | + | chr4_4:57555272-57555291 | Msa0690120:intron | 50.0% | |
| GCATACTAGAGTAGGGTCTG+GGG | + | chr4_4:57555274-57555293 | Msa0690120:intron | 50.0% | |
| TTCAGTTCTACCCCAACTGC+GGG | + | chr4_4:57555661-57555680 | Msa0690120:CDS | 50.0% | |
| CTGTGCTCATTGGGTTCTTC+AGG | + | chr4_4:57555857-57555876 | Msa0690120:CDS | 50.0% | |
| GTCGTCTTTCCCGTTGATCA+AGG | + | chr4_4:57555956-57555975 | Msa0690120:intron | 50.0% | |
| CTTTCCCGTTGATCAAGGAG+TGG | + | chr4_4:57555961-57555980 | Msa0690120:intron | 50.0% | |
| !! | TGGCAAGAGCTTTAGAGCAC+AGG | - | chr4_4:57556069-57556088 | None:intergenic | 50.0% |
| ATGGGTTTGGCCTCACCAAA+TGG | - | chr4_4:57556089-57556108 | None:intergenic | 50.0% | |
| GGCAACCAACAAATGTCCAC+GGG | - | chr4_4:57556403-57556422 | None:intergenic | 50.0% | |
| ! | TTGTTGGTTGCCTTGGGGTA+TGG | + | chr4_4:57556411-57556430 | Msa0690120:CDS | 50.0% |
| GTATGGTTTATGGCCGTCGA+TGG | + | chr4_4:57556428-57556447 | Msa0690120:CDS | 50.0% | |
| TAGGACAACAGCACGGAGTA+AGG | - | chr4_4:57556590-57556609 | None:intergenic | 50.0% | |
| TGCAATCACACCACTCCAGA+GGG | - | chr4_4:57556665-57556684 | None:intergenic | 50.0% | |
| CTCGGTAGAACTTGAGCATG+TGG | - | chr4_4:57556926-57556945 | None:intergenic | 50.0% | |
| AGCGTGGGACAAGGATTGGA+AGG | - | chr4_4:57553794-57553813 | None:intergenic | 55.0% | |
| CCTAAGCGTGGGACAAGGAT+TGG | - | chr4_4:57553798-57553817 | None:intergenic | 55.0% | |
| CCAATCCTTGTCCCACGCTT+AGG | + | chr4_4:57553795-57553814 | Msa0690120:five_prime_UTR | 55.0% | |
| ACGAGCGTGCGTAGCGTTAA+GGG | - | chr4_4:57553893-57553912 | None:intergenic | 55.0% | |
| AACGAGCGTGCGTAGCGTTA+AGG | - | chr4_4:57553894-57553913 | None:intergenic | 55.0% | |
| GATCCACGCCATCTCCACAT+GGG | + | chr4_4:57553952-57553971 | Msa0690120:CDS | 55.0% | |
| GCGACAACCACCAAAGGTCA+AGG | + | chr4_4:57553979-57553998 | Msa0690120:CDS | 55.0% | |
| ! | GCTTTTCTCGCCGTCGTTTC+CGG | + | chr4_4:57554001-57554020 | Msa0690120:CDS | 55.0% |
| GAGAACAAGAGCGGCCATAC+CGG | - | chr4_4:57554023-57554042 | None:intergenic | 55.0% | |
| GCTGAAGCTGTTCACTCGCT+TGG | + | chr4_4:57554085-57554104 | Msa0690120:CDS | 55.0% | |
| GACTTTCGTGACCACGGTGT+GGG | + | chr4_4:57554697-57554716 | Msa0690120:CDS | 55.0% | |
| GGCGAGTTACATGGAGGAGA+AGG | + | chr4_4:57554748-57554767 | Msa0690120:CDS | 55.0% | |
| AGCAAGGCTAACACGGCACA+TGG | - | chr4_4:57555569-57555588 | None:intergenic | 55.0% | |
| TTCTGCATGACCCGCAGTTG+GGG | - | chr4_4:57555674-57555693 | None:intergenic | 55.0% | |
| GTTCTGCATGACCCGCAGTT+GGG | - | chr4_4:57555675-57555694 | None:intergenic | 55.0% | |
| TGTTCTGCATGACCCGCAGT+TGG | - | chr4_4:57555676-57555695 | None:intergenic | 55.0% | |
| CGGCCATAAACCATACCCCA+AGG | - | chr4_4:57556424-57556443 | None:intergenic | 55.0% | |
| ACAACAGCACGGAGTAAGGC+AGG | - | chr4_4:57556586-57556605 | None:intergenic | 55.0% | |
| CTTGTTCTACGCCTTCCCTC+TGG | + | chr4_4:57556647-57556666 | Msa0690120:CDS | 55.0% | |
| ATCACACCACTCCAGAGGGA+AGG | - | chr4_4:57556661-57556680 | None:intergenic | 55.0% | |
| CTGCAATCACACCACTCCAG+AGG | - | chr4_4:57556666-57556685 | None:intergenic | 55.0% | |
| ! | GTTGGCCTAAGCGTGGGACA+AGG | - | chr4_4:57553803-57553822 | None:intergenic | 60.0% |
| CGATCCACGCCATCTCCACA+TGG | + | chr4_4:57553951-57553970 | Msa0690120:CDS | 60.0% | |
| TGACCCATGTGGAGATGGCG+TGG | - | chr4_4:57553958-57553977 | None:intergenic | 60.0% | |
| ACGCCATCTCCACATGGGTC+AGG | + | chr4_4:57553957-57553976 | Msa0690120:CDS | 60.0% | |
| TCGCCTGACCCATGTGGAGA+TGG | - | chr4_4:57553963-57553982 | None:intergenic | 60.0% | |
| TGGTTGTCGCCTGACCCATG+TGG | - | chr4_4:57553969-57553988 | None:intergenic | 60.0% | |
| GGTCAGGCGACAACCACCAA+AGG | + | chr4_4:57553973-57553992 | Msa0690120:CDS | 60.0% | |
| TCTCGCCGTCGTTTCCGGTA+TGG | + | chr4_4:57554006-57554025 | Msa0690120:CDS | 60.0% | |
| AGCGGCCATACCGGAAACGA+CGG | - | chr4_4:57554014-57554033 | None:intergenic | 60.0% | |
| CGACTTTCGTGACCACGGTG+TGG | + | chr4_4:57554696-57554715 | Msa0690120:CDS | 60.0% | |
| GCGGGTCATGCAGAACACCA+AGG | + | chr4_4:57555679-57555698 | Msa0690120:CDS | 60.0% | |
| ! | TCTACGCCTTCCCTCTGGAG+TGG | + | chr4_4:57556652-57556671 | Msa0690120:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 57553742 | 57556981 | 57553742 | ID=Msa0690120;Name=Msa0690120 |
| chr4_4 | mRNA | 57553742 | 57556981 | 57553742 | ID=Msa0690120-mRNA-1;Parent=Msa0690120;Name=Msa0690120-mRNA-1;_AED=0.03;_eAED=0.03;_QI=190|1|1|1|1|1|6|302|272 |
| chr4_4 | exon | 57553742 | 57554154 | 57553742 | ID=Msa0690120-mRNA-1:exon:15381;Parent=Msa0690120-mRNA-1 |
| chr4_4 | exon | 57554594 | 57554793 | 57554594 | ID=Msa0690120-mRNA-1:exon:15382;Parent=Msa0690120-mRNA-1 |
| chr4_4 | exon | 57555560 | 57555700 | 57555560 | ID=Msa0690120-mRNA-1:exon:15383;Parent=Msa0690120-mRNA-1 |
| chr4_4 | exon | 57555798 | 57555878 | 57555798 | ID=Msa0690120-mRNA-1:exon:15384;Parent=Msa0690120-mRNA-1 |
| chr4_4 | exon | 57556390 | 57556514 | 57556390 | ID=Msa0690120-mRNA-1:exon:15385;Parent=Msa0690120-mRNA-1 |
| chr4_4 | exon | 57556631 | 57556981 | 57556631 | ID=Msa0690120-mRNA-1:exon:15386;Parent=Msa0690120-mRNA-1 |
| chr4_4 | five_prime_UTR | 57553742 | 57553931 | 57553742 | ID=Msa0690120-mRNA-1:five_prime_utr;Parent=Msa0690120-mRNA-1 |
| chr4_4 | CDS | 57553932 | 57554154 | 57553932 | ID=Msa0690120-mRNA-1:cds;Parent=Msa0690120-mRNA-1 |
| chr4_4 | CDS | 57554594 | 57554793 | 57554594 | ID=Msa0690120-mRNA-1:cds;Parent=Msa0690120-mRNA-1 |
| chr4_4 | CDS | 57555560 | 57555700 | 57555560 | ID=Msa0690120-mRNA-1:cds;Parent=Msa0690120-mRNA-1 |
| chr4_4 | CDS | 57555798 | 57555878 | 57555798 | ID=Msa0690120-mRNA-1:cds;Parent=Msa0690120-mRNA-1 |
| chr4_4 | CDS | 57556390 | 57556514 | 57556390 | ID=Msa0690120-mRNA-1:cds;Parent=Msa0690120-mRNA-1 |
| chr4_4 | CDS | 57556631 | 57556679 | 57556631 | ID=Msa0690120-mRNA-1:cds;Parent=Msa0690120-mRNA-1 |
| chr4_4 | three_prime_UTR | 57556680 | 57556981 | 57556680 | ID=Msa0690120-mRNA-1:three_prime_utr;Parent=Msa0690120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
