AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0968320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0968320 MtrunA17_Chr7g0263821 93.074 231 16 0 1 231 1 231 5.81e-157 434
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0968320 AT2G37110.1 63.136 236 79 1 2 229 6 241 5.37e-107 308
Msa0968320 AT2G40935.8 27.397 219 112 8 19 227 5 186 2.23e-13 66.6
Msa0968320 AT2G40935.9 27.397 219 112 8 19 227 5 186 2.23e-13 66.6
Msa0968320 AT2G40935.1 27.397 219 112 8 19 227 5 186 2.23e-13 66.6
Msa0968320 AT2G40935.6 27.397 219 112 8 19 227 5 186 2.23e-13 66.6
Msa0968320 AT2G40935.5 27.397 219 112 8 19 227 5 186 2.23e-13 66.6

Find 97 sgRNAs with CRISPR-Local

Find 381 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAGCAAAATTTGTTATTA+AGG 0.152238 6_3:-98645203 Msa0968320:three_prime_UTR
CGACCCATGGTTTGCTCTCC+TGG 0.155725 6_3:+98645489 None:intergenic
CTCGGTTGTTTGTTCAGCTT+TGG 0.201151 6_3:+98650312 None:intergenic
AAAAGTGCATCTTGGTTCTT+TGG 0.239552 6_3:-98645344 Msa0968320:three_prime_UTR
CCGTCGCAGGTTCAATTTAG+AGG 0.280233 6_3:-98649088 Msa0968320:intron
GCATCTTGGTTCTTTGGATT+TGG 0.285518 6_3:-98645338 Msa0968320:three_prime_UTR
GAGAGAGATATGAGAAATTT+CGG 0.297656 6_3:+98650479 None:intergenic
GAGGACTTGCCTCTTCTTCT+TGG 0.300205 6_3:+98650362 None:intergenic
AATCACTGTTTGCATTATTC+TGG 0.315644 6_3:-98649189 Msa0968320:CDS
CATTCTAATCCTGGGACATT+TGG 0.320185 6_3:-98649213 Msa0968320:CDS
TCACCAACAAAATATAATAT+TGG 0.330122 6_3:+98650452 None:intergenic
GGATACGTGCTAGGTCTTCT+TGG 0.336415 6_3:-98649282 Msa0968320:intron
GAAGCAAAATTTGTTATTAA+GGG 0.358297 6_3:-98645202 Msa0968320:three_prime_UTR
AAGAAAATTCTTCCTCGTCT+TGG 0.373703 6_3:-98645457 Msa0968320:three_prime_UTR
TGGGTGCTGCGGAAGCTATT+TGG 0.374015 6_3:-98645667 Msa0968320:CDS
TCGGTTGTTTGTTCAGCTTT+GGG 0.376085 6_3:+98650313 None:intergenic
TCCTCCGTCTGCGCTTGTCT+TGG 0.401288 6_3:-98650196 Msa0968320:CDS
CTTCAATGCACAACCAGTAT+TGG 0.404863 6_3:-98645523 Msa0968320:CDS
GAAGTTGTGAGGCATTTAAT+AGG 0.405597 6_3:-98645695 Msa0968320:CDS
GACCCATGGTTTGCTCTCCT+GGG 0.411796 6_3:+98645490 None:intergenic
AGCCCATTCCTCGTTCTCCT+TGG 0.414902 6_3:-98650222 Msa0968320:CDS
GTGATTGGGAATTCATGCTT+TGG 0.424535 6_3:-98649159 Msa0968320:CDS
CGCCGTAGAGTGCCTCATCC+TGG 0.426616 6_3:-98645546 Msa0968320:CDS
TATTCTGGACTGTATGTGAT+TGG 0.427733 6_3:-98649174 Msa0968320:CDS
GTGGCTCCTTGTGTGCTGTA+TGG 0.429471 6_3:-98649255 Msa0968320:CDS
GAGCAGCAGGATCATTATCT+TGG 0.435263 6_3:-98650292 Msa0968320:CDS
ATTAAGGGCATGGTTCTGTA+TGG 0.441703 6_3:-98645187 Msa0968320:three_prime_UTR
GAGAGACTTCATTCTAATCC+TGG 0.446721 6_3:-98649222 Msa0968320:CDS
GTTTGTTCAGCTTTGGGAGG+TGG 0.450225 6_3:+98650319 None:intergenic
TTATATGTATTTGTTTATTG+TGG 0.454083 6_3:-98645255 Msa0968320:three_prime_UTR
TACATATAATACAGAACAGC+AGG 0.455475 6_3:+98645269 None:intergenic
TGCTGCAAAAGTGATCGTTT+TGG 0.456070 6_3:+98650173 None:intergenic
TGTGCTGTATGGAAGCAATA+TGG 0.456712 6_3:-98649244 Msa0968320:CDS
GATACGTGCTAGGTCTTCTT+GGG 0.460038 6_3:-98649281 Msa0968320:intron
CAAAATCAGGAGAGAGAAAA+GGG 0.461210 6_3:+98645370 None:intergenic
GGAGAGCAAACCATGGGTCG+TGG 0.465391 6_3:-98645486 Msa0968320:CDS
GACCGCCGATGGGCTTCCGA+TGG 0.466752 6_3:-98650266 Msa0968320:CDS
GCAAAATCAGGAGAGAGAAA+AGG 0.469880 6_3:+98645369 None:intergenic
AAAATTCTTCCTCGTCTTGG+AGG 0.474645 6_3:-98645454 Msa0968320:three_prime_UTR
AACTTGTTCTATAATAAAAC+AGG 0.477438 6_3:+98645075 None:intergenic
AAAATTTGTTATTAAGGGCA+TGG 0.482620 6_3:-98645197 Msa0968320:three_prime_UTR
ATGGGCCATGGAAGCGTCAT+GGG 0.486800 6_3:-98650247 Msa0968320:CDS
TTCCAAGGAGAACGAGGAAT+GGG 0.488145 6_3:+98650220 None:intergenic
ATTATAGAACAAGTTGTCTC+CGG 0.488298 6_3:-98645067 Msa0968320:three_prime_UTR
GATGGGCTTCCGATGGGCCA+TGG 0.493261 6_3:-98650259 Msa0968320:CDS
GTTGGAATTGTCTTGCACCC+TGG 0.503169 6_3:-98649137 Msa0968320:CDS
AATTCATCAATCATCATCAA+TGG 0.508789 6_3:-98650407 Msa0968320:exon
CGGAAGCTATTTGGAAAATG+AGG 0.509204 6_3:-98645658 Msa0968320:CDS
ACGGCTATGATATGAAAGCC+AGG 0.511774 6_3:+98649119 None:intergenic
GATGGGCCATGGAAGCGTCA+TGG 0.513821 6_3:-98650248 Msa0968320:CDS
GTCTGTGCTCTTTGTCAAGA+AGG 0.519013 6_3:-98645579 Msa0968320:CDS
TTGGGAATTCATGCTTTGGT+TGG 0.519796 6_3:-98649155 Msa0968320:CDS
TATCTTGGATGGACCGCCGA+TGG 0.521448 6_3:-98650277 Msa0968320:CDS
TGAACAAACAACCGAGCAGC+AGG 0.523235 6_3:-98650305 Msa0968320:CDS
ATCTTGGATGGACCGCCGAT+GGG 0.533392 6_3:-98650276 Msa0968320:CDS
ATTCTGGACTGTATGTGATT+GGG 0.533754 6_3:-98649173 Msa0968320:CDS
TTCAACGTCAAATCATATAG+AGG 0.534820 6_3:+98645405 None:intergenic
GCTGACCCATGACGCTTCCA+TGG 0.535716 6_3:+98650242 None:intergenic
GAGAGCAAACCATGGGTCGT+GGG 0.539054 6_3:-98645485 Msa0968320:CDS
CAGTGATTGCCAAATGTCCC+AGG 0.539931 6_3:+98649204 None:intergenic
TCTTCAAGCCCCACGACCCA+TGG 0.541687 6_3:+98645476 None:intergenic
ACCCATGGTTTGCTCTCCTG+GGG 0.548999 6_3:+98645491 None:intergenic
ACTCAATCACCAAGAAGAAG+AGG 0.557212 6_3:-98650371 Msa0968320:CDS
TGTTGTTGTTGTTTGAGAAG+AGG 0.558852 6_3:+98650343 None:intergenic
ATGGCCCATCGGAAGCCCAT+CGG 0.562094 6_3:+98650261 None:intergenic
GCCGTACTGAAATCCGTCGC+AGG 0.563057 6_3:-98649101 Msa0968320:CDS
AGCAGGATCATTATCTTGGA+TGG 0.563776 6_3:-98650288 Msa0968320:CDS
TTGGCCAAGACAAGCGCAGA+CGG 0.569231 6_3:+98650192 None:intergenic
GTTCCAAGGAGAACGAGGAA+TGG 0.573660 6_3:+98650219 None:intergenic
GCAGCGTGAACATTATGAGT+TGG 0.577730 6_3:-98645634 Msa0968320:CDS
GCGCAGACGGAGGAGTTCCA+AGG 0.578089 6_3:+98650205 None:intergenic
AGCCAGGATGAGGCACTCTA+CGG 0.582573 6_3:+98645544 None:intergenic
AGAGACTTCATTCTAATCCT+GGG 0.586170 6_3:-98649221 Msa0968320:CDS
AAGATAATGATCCTGCTGCT+CGG 0.588909 6_3:+98650294 None:intergenic
GCTAGGTCTTCTTGGGAGTG+TGG 0.589971 6_3:-98649274 Msa0968320:intron
ATGACGCTTCCATGGCCCAT+CGG 0.595557 6_3:+98650250 None:intergenic
ACCTGCGACGGATTTCAGTA+CGG 0.596489 6_3:+98649100 None:intergenic
ACTGGTTGTGCATTGAAGCC+AGG 0.597364 6_3:+98645528 None:intergenic
CTAGTCATAAAACAAGGGGC+CGG 0.607165 6_3:+98645048 None:intergenic
GTTGTTTGTTCAGCTTTGGG+AGG 0.607252 6_3:+98650316 None:intergenic
CCTCTAAATTGAACCTGCGA+CGG 0.608381 6_3:+98649088 None:intergenic
AGAGCAAACCATGGGTCGTG+GGG 0.610620 6_3:-98645484 Msa0968320:CDS
TGTGCATTGAAGCCAGGATG+AGG 0.621067 6_3:+98645534 None:intergenic
AATAGGTCATGTGGGTGCTG+CGG 0.621864 6_3:-98645678 Msa0968320:CDS
GAGGCATTTAATAGGTCATG+TGG 0.624379 6_3:-98645687 Msa0968320:CDS
AAAACTAGTCATAAAACAAG+GGG 0.630535 6_3:+98645044 None:intergenic
AGAGAAAAGGGAGCAAATGA+CGG 0.634642 6_3:+98645382 None:intergenic
ATTTCGGAGAAAATAGATGT+CGG 0.640965 6_3:+98650495 None:intergenic
CGGCTATGATATGAAAGCCA+GGG 0.643919 6_3:+98649120 None:intergenic
TTGCTTCCATACAGCACACA+AGG 0.646064 6_3:+98649249 None:intergenic
CCCATGGTTTGCTCTCCTGG+GGG 0.646326 6_3:+98645492 None:intergenic
TGAAAATCAGGGAAGTTGTG+AGG 0.661588 6_3:-98645706 Msa0968320:intron
GAGGAGTTCCAAGGAGAACG+AGG 0.662695 6_3:+98650214 None:intergenic
GCCAAGACAAGCGCAGACGG+AGG 0.664318 6_3:+98650195 None:intergenic
AGAATAGCACCTCCAAGACG+AGG 0.672156 6_3:+98645445 None:intergenic
AGGCATTTAATAGGTCATGT+GGG 0.681035 6_3:-98645686 Msa0968320:CDS
ACATATAATACAGAACAGCA+GGG 0.688049 6_3:+98645270 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATATATAAAAATTCTAATA+TGG + chr6_3:98646109-98646128 None:intergenic 10.0%
!! TTTATATATCAAAATAACAT+TGG - chr6_3:98646119-98646138 Msa0968320:intron 10.0%
!!! TTGTTTTTTTGTATTTTATT+GGG - chr6_3:98646142-98646161 Msa0968320:intron 10.0%
!! ATTGTATTATAATAAAGTTT+AGG - chr6_3:98646914-98646933 Msa0968320:intron 10.0%
!!! GTTGTTTTTTTGTATTTTAT+TGG - chr6_3:98646141-98646160 Msa0968320:intron 15.0%
!!! TGTTTTTTTGTATTTTATTG+GGG - chr6_3:98646143-98646162 Msa0968320:intron 15.0%
!! TTGTTAAATTATATATGAAG+AGG + chr6_3:98647519-98647538 None:intergenic 15.0%
!! ATATGAAAAAATTTGGATTA+TGG + chr6_3:98647678-98647697 None:intergenic 15.0%
!!! AATTTTGTCTGTATTTTTTA+TGG - chr6_3:98647896-98647915 Msa0968320:intron 15.0%
!!! TTTTTATCTAAATTTTGTTC+AGG - chr6_3:98647953-98647972 Msa0968320:intron 15.0%
!! TTGTTAAATTATATATGAAG+AGG + chr6_3:98647519-98647538 None:intergenic 15.0%
!! ATATGAAAAAATTTGGATTA+TGG + chr6_3:98647678-98647697 None:intergenic 15.0%
!! AACTGTTTATAAAATGATTT+CGG - chr6_3:98647702-98647721 Msa0968320:intron 15.0%
!!! AATTTTGTCTGTATTTTTTA+TGG - chr6_3:98647896-98647915 Msa0968320:intron 15.0%
!!! TTTTTATCTAAATTTTGTTC+AGG - chr6_3:98647953-98647972 Msa0968320:intron 15.0%
!! TTGTTAAATTATATATGAAG+AGG + chr6_3:98647519-98647538 None:intergenic 15.0%
!! ATATGAAAAAATTTGGATTA+TGG + chr6_3:98647678-98647697 None:intergenic 15.0%
!! AACTGTTTATAAAATGATTT+CGG - chr6_3:98647702-98647721 Msa0968320:intron 15.0%
!!! AATTTTGTCTGTATTTTTTA+TGG - chr6_3:98647896-98647915 Msa0968320:intron 15.0%
!!! TTTTTATCTAAATTTTGTTC+AGG - chr6_3:98647953-98647972 Msa0968320:intron 15.0%
!! TCAATTATTGTATTAACTAT+TGG - chr6_3:98649844-98649863 Msa0968320:intron 15.0%
!! TTATATGTATTTGTTTATTG+TGG - chr6_3:98650325-98650344 Msa0968320:CDS 15.0%
!!! TTTATGACTAGTTTTTTAAT+TGG - chr6_3:98650544-98650563 Msa0968320:five_prime_UTR 15.0%
!!! TCTCCAATATTATATTTTGT+TGG - chr6_3:98645125-98645144 Msa0968320:three_prime_UTR 20.0%
!! TCACCAACAAAATATAATAT+TGG + chr6_3:98645131-98645150 None:intergenic 20.0%
!! TAGAAGAGAAATAAAAGAAA+GGG + chr6_3:98645454-98645473 None:intergenic 20.0%
!! TTAGAAGAGAAATAAAAGAA+AGG + chr6_3:98645455-98645474 None:intergenic 20.0%
!!! ATTTGTGAGTTGATAAAATT+GGG - chr6_3:98645511-98645530 Msa0968320:CDS 20.0%
!!! TTTTTTTGAGGAGAATTTTA+GGG - chr6_3:98645536-98645555 Msa0968320:CDS 20.0%
!!! GAATTATTTTTCCTAACAAA+GGG + chr6_3:98645589-98645608 None:intergenic 20.0%
!!! TGAATTATTTTTCCTAACAA+AGG + chr6_3:98645590-98645609 None:intergenic 20.0%
!!! TATCATAAGAATTTTGACTT+TGG - chr6_3:98645653-98645672 Msa0968320:CDS 20.0%
!!! TTATAAAATCGTTTGGTTTA+GGG + chr6_3:98645738-98645757 None:intergenic 20.0%
!!! ATTATAAAATCGTTTGGTTT+AGG + chr6_3:98645739-98645758 None:intergenic 20.0%
!! ATGAACATTATAAAATCGTT+TGG + chr6_3:98645745-98645764 None:intergenic 20.0%
!!! TATTTGATATGTTTTCGATA+TGG - chr6_3:98646235-98646254 Msa0968320:intron 20.0%
!!! AATAATCAAACTTTTGAACA+CGG + chr6_3:98646979-98646998 None:intergenic 20.0%
!! AAATAAAATAGCTGTATAGA+GGG - chr6_3:98647157-98647176 Msa0968320:intron 20.0%
!!! CACATTTTAAATATTTTGAG+AGG + chr6_3:98647428-98647447 None:intergenic 20.0%
!! GTTATGCATATGAAAAAATT+TGG + chr6_3:98647685-98647704 None:intergenic 20.0%
!!! GTACTTGAAATATTTTAATG+TGG - chr6_3:98647723-98647742 Msa0968320:intron 20.0%
!! ATATATGATATCCATTGTAA+CGG + chr6_3:98647791-98647810 None:intergenic 20.0%
!! TAAAAAAATATCCCAATGAT+AGG + chr6_3:98647939-98647958 None:intergenic 20.0%
!! TTTCATCTATGAATTACTTT+GGG + chr6_3:98648039-98648058 None:intergenic 20.0%
!!! TTTTCATCTATGAATTACTT+TGG + chr6_3:98648040-98648059 None:intergenic 20.0%
!! AAAGTAATTCATAGATGAAA+AGG - chr6_3:98648039-98648058 Msa0968320:intron 20.0%
!!! CACATTTTAAATATTTTGAG+AGG + chr6_3:98647428-98647447 None:intergenic 20.0%
!! GTTATGCATATGAAAAAATT+TGG + chr6_3:98647685-98647704 None:intergenic 20.0%
!! ATATATGATATCCATTGTAA+CGG + chr6_3:98647791-98647810 None:intergenic 20.0%
!! TAAAAAAATATCCCAATGAT+AGG + chr6_3:98647939-98647958 None:intergenic 20.0%
!! TTTCATCTATGAATTACTTT+GGG + chr6_3:98648039-98648058 None:intergenic 20.0%
!!! TTTTCATCTATGAATTACTT+TGG + chr6_3:98648040-98648059 None:intergenic 20.0%
!! AAAGTAATTCATAGATGAAA+AGG - chr6_3:98648039-98648058 Msa0968320:intron 20.0%
!!! CACATTTTAAATATTTTGAG+AGG + chr6_3:98647428-98647447 None:intergenic 20.0%
!! GTTATGCATATGAAAAAATT+TGG + chr6_3:98647685-98647704 None:intergenic 20.0%
!! ATATATGATATCCATTGTAA+CGG + chr6_3:98647791-98647810 None:intergenic 20.0%
!! TAAAAAAATATCCCAATGAT+AGG + chr6_3:98647939-98647958 None:intergenic 20.0%
!! TTTCATCTATGAATTACTTT+GGG + chr6_3:98648039-98648058 None:intergenic 20.0%
!!! TTTTCATCTATGAATTACTT+TGG + chr6_3:98648040-98648059 None:intergenic 20.0%
!! AAAGTAATTCATAGATGAAA+AGG - chr6_3:98648039-98648058 Msa0968320:intron 20.0%
!! TATACTCTTTAAATATGAGA+AGG - chr6_3:98649817-98649836 Msa0968320:intron 20.0%
!!! TGAAGCAAAATTTGTTATTA+AGG - chr6_3:98650377-98650396 Msa0968320:CDS 20.0%
!!! GAAGCAAAATTTGTTATTAA+GGG - chr6_3:98650378-98650397 Msa0968320:CDS 20.0%
!!! AACTTGTTCTATAATAAAAC+AGG + chr6_3:98650508-98650527 None:intergenic 20.0%
!! AAAAACTAGTCATAAAACAA+GGG + chr6_3:98650540-98650559 None:intergenic 20.0%
!! AAAAAACTAGTCATAAAACA+AGG + chr6_3:98650541-98650560 None:intergenic 20.0%
! AATTCATCAATCATCATCAA+TGG - chr6_3:98645173-98645192 Msa0968320:three_prime_UTR 25.0%
!!! GATTTGTGAGTTGATAAAAT+TGG - chr6_3:98645510-98645529 Msa0968320:CDS 25.0%
!!! TTTGTGAGTTGATAAAATTG+GGG - chr6_3:98645512-98645531 Msa0968320:CDS 25.0%
!!! GTTTTTTTGAGGAGAATTTT+AGG - chr6_3:98645535-98645554 Msa0968320:CDS 25.0%
! ATTCTATGTTTATTATGTGC+AGG - chr6_3:98645676-98645695 Msa0968320:CDS 25.0%
! TCAAAATCCACAACATAATA+AGG + chr6_3:98645706-98645725 None:intergenic 25.0%
! ATCAAAAGTGAATTCTATTG+TGG - chr6_3:98645768-98645787 Msa0968320:intron 25.0%
!! ATAATTTTACGTATTGTCCA+TGG + chr6_3:98645815-98645834 None:intergenic 25.0%
!! TATCAGTTTGTTCAAAACAT+CGG + chr6_3:98645941-98645960 None:intergenic 25.0%
! TGAACAAACTGATATCAATT+AGG - chr6_3:98645947-98645966 Msa0968320:intron 25.0%
!! AAAAGCGGATAAATGTTTTA+GGG + chr6_3:98646263-98646282 None:intergenic 25.0%
!! TAAAAGCGGATAAATGTTTT+AGG + chr6_3:98646264-98646283 None:intergenic 25.0%
! TATCATCACTACATAATAAG+AGG + chr6_3:98646540-98646559 None:intergenic 25.0%
! AATGTTGTAATGAAACTAGT+TGG + chr6_3:98646715-98646734 None:intergenic 25.0%
!!! GATTATTTTATAATGCAGTG+CGG - chr6_3:98646992-98647011 Msa0968320:intron 25.0%
! TAACTGTCATAAAAATACCA+CGG - chr6_3:98647083-98647102 Msa0968320:intron 25.0%
! GAAATAAAATAGCTGTATAG+AGG - chr6_3:98647156-98647175 Msa0968320:intron 25.0%
!!! TGTCACACATTCATTTTTAT+AGG - chr6_3:98647349-98647368 Msa0968320:intron 25.0%
!!! GTCACACATTCATTTTTATA+GGG - chr6_3:98647350-98647369 Msa0968320:intron 25.0%
!!! TTAAATATTTTGAGAGGATC+TGG + chr6_3:98647422-98647441 None:intergenic 25.0%
! TACAGACAAAATTATCTTCA+TGG + chr6_3:98647889-98647908 None:intergenic 25.0%
! ATGAAAATAGTCCTATCATT+GGG - chr6_3:98647925-98647944 Msa0968320:intron 25.0%
! TTAAGCAAATACAAAGTTGA+TGG + chr6_3:98647997-98648016 None:intergenic 25.0%
!!! TGTCACACATTCATTTTTAT+AGG - chr6_3:98647349-98647368 Msa0968320:intron 25.0%
!!! GTCACACATTCATTTTTATA+GGG - chr6_3:98647350-98647369 Msa0968320:intron 25.0%
!!! TTAAATATTTTGAGAGGATC+TGG + chr6_3:98647422-98647441 None:intergenic 25.0%
!!! GGACTTGAAATATTTTTATG+TGG - chr6_3:98648557-98648576 Msa0968320:intron 25.0%
! TACAGACAAAATTATCTTCA+TGG + chr6_3:98647889-98647908 None:intergenic 25.0%
! ATGAAAATAGTCCTATCATT+GGG - chr6_3:98647925-98647944 Msa0968320:intron 25.0%
! TTAAGCAAATACAAAGTTGA+TGG + chr6_3:98647997-98648016 None:intergenic 25.0%
!!! TGTCACACATTCATTTTTAT+AGG - chr6_3:98647349-98647368 Msa0968320:intron 25.0%
!!! GTCACACATTCATTTTTATA+GGG - chr6_3:98647350-98647369 Msa0968320:intron 25.0%
!!! TTAAATATTTTGAGAGGATC+TGG + chr6_3:98647422-98647441 None:intergenic 25.0%
!!! GGACTTGAAATATTTTTATG+TGG - chr6_3:98648557-98648576 Msa0968320:intron 25.0%
! TACAGACAAAATTATCTTCA+TGG + chr6_3:98647889-98647908 None:intergenic 25.0%
! ATGAAAATAGTCCTATCATT+GGG - chr6_3:98647925-98647944 Msa0968320:intron 25.0%
! TTAAGCAAATACAAAGTTGA+TGG + chr6_3:98647997-98648016 None:intergenic 25.0%
!! CATATTTAAAGAGTATAACG+TGG + chr6_3:98649814-98649833 None:intergenic 25.0%
!!! AAAATTTGTTATTAAGGGCA+TGG - chr6_3:98650383-98650402 Msa0968320:CDS 25.0%
! AAAACTAGTCATAAAACAAG+GGG + chr6_3:98650539-98650558 None:intergenic 25.0%
ATTTCGGAGAAAATAGATGT+CGG + chr6_3:98645088-98645107 None:intergenic 30.0%
GAGAGAGATATGAGAAATTT+CGG + chr6_3:98645104-98645123 None:intergenic 30.0%
!! TTGTGAGTTGATAAAATTGG+GGG - chr6_3:98645513-98645532 Msa0968320:CDS 30.0%
!!! TAAAATTGGGGGTTTTTTTG+AGG - chr6_3:98645524-98645543 Msa0968320:CDS 30.0%
AGGTTAACCTTATTATGTTG+TGG - chr6_3:98645696-98645715 Msa0968320:CDS 30.0%
! CACGACTTTTCTCATATTTA+CGG - chr6_3:98645875-98645894 Msa0968320:intron 30.0%
AGTAGACTAGTAGATGTTAA+TGG + chr6_3:98646003-98646022 None:intergenic 30.0%
GGAAATAGACGAAAGAAAAT+GGG - chr6_3:98646164-98646183 Msa0968320:intron 30.0%
AACATATCAAATAGAGCAAG+AGG + chr6_3:98646228-98646247 None:intergenic 30.0%
!! CATTTATCCGCTTTTACTTA+TGG - chr6_3:98646268-98646287 Msa0968320:intron 30.0%
AGTTCAACCATAAGTAAAAG+CGG + chr6_3:98646278-98646297 None:intergenic 30.0%
AATCACTGTTTGCATTATTC+TGG - chr6_3:98646391-98646410 Msa0968320:intron 30.0%
! AGTTTACACTTTGGTTCATT+CGG + chr6_3:98646674-98646693 None:intergenic 30.0%
GTAATGAAACTAGTTGGATT+CGG + chr6_3:98646709-98646728 None:intergenic 30.0%
ACTGTTCAGAAAAATAGTTC+AGG + chr6_3:98646828-98646847 None:intergenic 30.0%
CTGATTTCAAACTAATAGCT+CGG - chr6_3:98646945-98646964 Msa0968320:intron 30.0%
TTATGACAGTTAGCTATTGA+TGG + chr6_3:98647075-98647094 None:intergenic 30.0%
AAAATACCACGGTGATAAAT+TGG - chr6_3:98647094-98647113 Msa0968320:intron 30.0%
AAATACCACGGTGATAAATT+GGG - chr6_3:98647095-98647114 Msa0968320:intron 30.0%
ATAAATTGGGGAAAATTCTC+TGG - chr6_3:98647108-98647127 Msa0968320:intron 30.0%
GAGAAATGTATAGTAGCATA+GGG + chr6_3:98647279-98647298 None:intergenic 30.0%
AATTAGAACACTGAACTGAA+GGG + chr6_3:98647301-98647320 None:intergenic 30.0%
TTGATTGCAATCCATCTATA+TGG - chr6_3:98647319-98647338 Msa0968320:intron 30.0%
! TTGTCTTTTGGTATTTGATC+TGG - chr6_3:98647395-98647414 Msa0968320:intron 30.0%
ACAAAGTCAAGAAAACAACA+AGG + chr6_3:98647468-98647487 None:intergenic 30.0%
! TGAAGAGGTTTAAAGTACAA+GGG + chr6_3:98647504-98647523 None:intergenic 30.0%
! ATGAAGAGGTTTAAAGTACA+AGG + chr6_3:98647505-98647524 None:intergenic 30.0%
GATAGAGAATAAAAAATGCG+AGG + chr6_3:98647644-98647663 None:intergenic 30.0%
TGGATATCATATATCAACTG+TGG - chr6_3:98647797-98647816 Msa0968320:intron 30.0%
! CAATGATAGGACTATTTTCA+TGG + chr6_3:98647926-98647945 None:intergenic 30.0%
CATGAAAATAGTCCTATCAT+TGG - chr6_3:98647924-98647943 Msa0968320:intron 30.0%
ACAATTGAATTCCAGATTAG+TGG - chr6_3:98648065-98648084 Msa0968320:intron 30.0%
GAGAAATGTATAGTAGCATA+GGG + chr6_3:98647279-98647298 None:intergenic 30.0%
AATTAGAACACTGAACTGAA+GGG + chr6_3:98647301-98647320 None:intergenic 30.0%
TTGATTGCAATCCATCTATA+TGG - chr6_3:98647319-98647338 Msa0968320:intron 30.0%
! TTGTCTTTTGGTATTTGATC+TGG - chr6_3:98647395-98647414 Msa0968320:intron 30.0%
ACAAAGTCAAGAAAACAACA+AGG + chr6_3:98647468-98647487 None:intergenic 30.0%
! TGAAGAGGTTTAAAGTACAA+GGG + chr6_3:98647504-98647523 None:intergenic 30.0%
! ATGAAGAGGTTTAAAGTACA+AGG + chr6_3:98647505-98647524 None:intergenic 30.0%
GATAGAGAATAAAAAATGCG+AGG + chr6_3:98647644-98647663 None:intergenic 30.0%
TGGATATCATATATCAACTG+TGG - chr6_3:98647797-98647816 Msa0968320:intron 30.0%
! CAATGATAGGACTATTTTCA+TGG + chr6_3:98647926-98647945 None:intergenic 30.0%
CATGAAAATAGTCCTATCAT+TGG - chr6_3:98647924-98647943 Msa0968320:intron 30.0%
ACAATTGAATTCCAGATTAG+TGG - chr6_3:98648065-98648084 Msa0968320:intron 30.0%
GAGAAATGTATAGTAGCATA+GGG + chr6_3:98647279-98647298 None:intergenic 30.0%
AATTAGAACACTGAACTGAA+GGG + chr6_3:98647301-98647320 None:intergenic 30.0%
TTGATTGCAATCCATCTATA+TGG - chr6_3:98647319-98647338 Msa0968320:intron 30.0%
! TTGTCTTTTGGTATTTGATC+TGG - chr6_3:98647395-98647414 Msa0968320:intron 30.0%
ACAAAGTCAAGAAAACAACA+AGG + chr6_3:98647468-98647487 None:intergenic 30.0%
! TGAAGAGGTTTAAAGTACAA+GGG + chr6_3:98647504-98647523 None:intergenic 30.0%
! ATGAAGAGGTTTAAAGTACA+AGG + chr6_3:98647505-98647524 None:intergenic 30.0%
GATAGAGAATAAAAAATGCG+AGG + chr6_3:98647644-98647663 None:intergenic 30.0%
TGGATATCATATATCAACTG+TGG - chr6_3:98647797-98647816 Msa0968320:intron 30.0%
! CAATGATAGGACTATTTTCA+TGG + chr6_3:98647926-98647945 None:intergenic 30.0%
CATGAAAATAGTCCTATCAT+TGG - chr6_3:98647924-98647943 Msa0968320:intron 30.0%
ACAATTGAATTCCAGATTAG+TGG - chr6_3:98648065-98648084 Msa0968320:intron 30.0%
TGGACCATAGAAAGATTATT+GGG + chr6_3:98649794-98649813 None:intergenic 30.0%
TTCAACGTCAAATCATATAG+AGG + chr6_3:98650178-98650197 None:intergenic 30.0%
ACATATAATACAGAACAGCA+GGG + chr6_3:98650313-98650332 None:intergenic 30.0%
TACATATAATACAGAACAGC+AGG + chr6_3:98650314-98650333 None:intergenic 30.0%
ATTATAGAACAAGTTGTCTC+CGG - chr6_3:98650513-98650532 Msa0968320:five_prime_UTR 30.0%
!! TGTTGTTGTTGTTTGAGAAG+AGG + chr6_3:98645240-98645259 None:intergenic 35.0%
AAGGGACATATTCTTGTACA+TGG + chr6_3:98645571-98645590 None:intergenic 35.0%
CAAGAATATGTCCCTTTGTT+AGG - chr6_3:98645575-98645594 Msa0968320:CDS 35.0%
! AATCGTTTGGTTTAGGGTTA+TGG + chr6_3:98645732-98645751 None:intergenic 35.0%
! ATTTTACGTATTGTCCATGG+TGG + chr6_3:98645812-98645831 None:intergenic 35.0%
TTTGAATAGTATCGTGTCGT+TGG + chr6_3:98645846-98645865 None:intergenic 35.0%
TCTCATATTTACGGCTAAGA+CGG - chr6_3:98645884-98645903 Msa0968320:intron 35.0%
!! TTTTAAGTACTAGTCCACGT+TGG - chr6_3:98646065-98646084 Msa0968320:intron 35.0%
GGGAAATAGACGAAAGAAAA+TGG - chr6_3:98646163-98646182 Msa0968320:intron 35.0%
! GCTTTTACTTATGGTTGAAC+TGG - chr6_3:98646277-98646296 Msa0968320:intron 35.0%
AGAGACTTCATTCTAATCCT+GGG - chr6_3:98646359-98646378 Msa0968320:intron 35.0%
TATTCTGGACTGTATGTGAT+TGG - chr6_3:98646406-98646425 Msa0968320:intron 35.0%
ATTCTGGACTGTATGTGATT+GGG - chr6_3:98646407-98646426 Msa0968320:intron 35.0%
! ACCTATTGTGATTTGTGATG+TGG - chr6_3:98646569-98646588 Msa0968320:intron 35.0%
! CAAACTTTTGAACACGGTTT+GGG + chr6_3:98646973-98646992 None:intergenic 35.0%
! TCAAACTTTTGAACACGGTT+TGG + chr6_3:98646974-98646993 None:intergenic 35.0%
AATACCACGGTGATAAATTG+GGG - chr6_3:98647096-98647115 Msa0968320:intron 35.0%
GGAGAAATGTATAGTAGCAT+AGG + chr6_3:98647280-98647299 None:intergenic 35.0%
CAATTAGAACACTGAACTGA+AGG + chr6_3:98647302-98647321 None:intergenic 35.0%
! GCACATGTACTTTTGTCTTT+TGG - chr6_3:98647383-98647402 Msa0968320:intron 35.0%
! AAGACCTAATTTGCATGTTG+GGG + chr6_3:98647592-98647611 None:intergenic 35.0%
! GAAGACCTAATTTGCATGTT+GGG + chr6_3:98647593-98647612 None:intergenic 35.0%
! AGAAGACCTAATTTGCATGT+TGG + chr6_3:98647594-98647613 None:intergenic 35.0%
AAACTAAAACGACTCAGTAC+AGG + chr6_3:98647827-98647846 None:intergenic 35.0%
GGAGAAATGTATAGTAGCAT+AGG + chr6_3:98647280-98647299 None:intergenic 35.0%
CAATTAGAACACTGAACTGA+AGG + chr6_3:98647302-98647321 None:intergenic 35.0%
! GCACATGTACTTTTGTCTTT+TGG - chr6_3:98647383-98647402 Msa0968320:intron 35.0%
! AAGACCTAATTTGCATGTTG+GGG + chr6_3:98647592-98647611 None:intergenic 35.0%
! GAAGACCTAATTTGCATGTT+GGG + chr6_3:98647593-98647612 None:intergenic 35.0%
! AGAAGACCTAATTTGCATGT+TGG + chr6_3:98647594-98647613 None:intergenic 35.0%
AAACTAAAACGACTCAGTAC+AGG + chr6_3:98647827-98647846 None:intergenic 35.0%
GGAGAAATGTATAGTAGCAT+AGG + chr6_3:98647280-98647299 None:intergenic 35.0%
CAATTAGAACACTGAACTGA+AGG + chr6_3:98647302-98647321 None:intergenic 35.0%
! GCACATGTACTTTTGTCTTT+TGG - chr6_3:98647383-98647402 Msa0968320:intron 35.0%
! AAGACCTAATTTGCATGTTG+GGG + chr6_3:98647592-98647611 None:intergenic 35.0%
! GAAGACCTAATTTGCATGTT+GGG + chr6_3:98647593-98647612 None:intergenic 35.0%
! AGAAGACCTAATTTGCATGT+TGG + chr6_3:98647594-98647613 None:intergenic 35.0%
AAACTAAAACGACTCAGTAC+AGG + chr6_3:98647827-98647846 None:intergenic 35.0%
ACCATAGAAAGATTATTGGG+GGG + chr6_3:98649791-98649810 None:intergenic 35.0%
GACCATAGAAAGATTATTGG+GGG + chr6_3:98649792-98649811 None:intergenic 35.0%
GGACCATAGAAAGATTATTG+GGG + chr6_3:98649793-98649812 None:intergenic 35.0%
GTGGACCATAGAAAGATTAT+TGG + chr6_3:98649795-98649814 None:intergenic 35.0%
! ATTGGTGATCCTTGAAAATC+AGG - chr6_3:98649862-98649881 Msa0968320:intron 35.0%
! TTGGTGATCCTTGAAAATCA+GGG - chr6_3:98649863-98649882 Msa0968320:intron 35.0%
! GAAGTTGTGAGGCATTTAAT+AGG - chr6_3:98649885-98649904 Msa0968320:intron 35.0%
AGGCATTTAATAGGTCATGT+GGG - chr6_3:98649894-98649913 Msa0968320:intron 35.0%
AAGAAAATTCTTCCTCGTCT+TGG - chr6_3:98650123-98650142 Msa0968320:intron 35.0%
CAAAATCAGGAGAGAGAAAA+GGG + chr6_3:98650213-98650232 None:intergenic 35.0%
! ATGCACTTTTCAGCAAAATC+AGG + chr6_3:98650226-98650245 None:intergenic 35.0%
!! TTTTGCTGAAAAGTGCATCT+TGG - chr6_3:98650228-98650247 Msa0968320:CDS 35.0%
! AAAAGTGCATCTTGGTTCTT+TGG - chr6_3:98650236-98650255 Msa0968320:CDS 35.0%
ACTCAATCACCAAGAAGAAG+AGG - chr6_3:98645209-98645228 Msa0968320:three_prime_UTR 40.0%
TCGGTTGTTTGTTCAGCTTT+GGG + chr6_3:98645270-98645289 None:intergenic 40.0%
AAGATAATGATCCTGCTGCT+CGG + chr6_3:98645289-98645308 None:intergenic 40.0%
AGCAGGATCATTATCTTGGA+TGG - chr6_3:98645292-98645311 Msa0968320:three_prime_UTR 40.0%
! TGCTGCAAAAGTGATCGTTT+TGG + chr6_3:98645410-98645429 None:intergenic 40.0%
AGACTGATGTCGTTCATCAT+TGG - chr6_3:98646029-98646048 Msa0968320:intron 40.0%
!! AGTATGAAGCGAAAGTGCTT+TGG - chr6_3:98646194-98646213 Msa0968320:intron 40.0%
TGTGCTGTATGGAAGCAATA+TGG - chr6_3:98646336-98646355 Msa0968320:intron 40.0%
GAGAGACTTCATTCTAATCC+TGG - chr6_3:98646358-98646377 Msa0968320:intron 40.0%
CATTCTAATCCTGGGACATT+TGG - chr6_3:98646367-98646386 Msa0968320:intron 40.0%
GTGATTGGGAATTCATGCTT+TGG - chr6_3:98646421-98646440 Msa0968320:intron 40.0%
TTGGGAATTCATGCTTTGGT+TGG - chr6_3:98646425-98646444 Msa0968320:intron 40.0%
GCCACATCACAAATCACAAT+AGG + chr6_3:98646573-98646592 None:intergenic 40.0%
!! ACTGAACAACTGGTTTGGTT+CGG + chr6_3:98646740-98646759 None:intergenic 40.0%
ACCAAACCAGTTGTTCAGTT+TGG - chr6_3:98646741-98646760 Msa0968320:intron 40.0%
ACCAAACTGAACAACTGGTT+TGG + chr6_3:98646745-98646764 None:intergenic 40.0%
AATACCTTGCCCACTCAATA+CGG + chr6_3:98647045-98647064 None:intergenic 40.0%
! CAGTTAGCTATTGATGGTCA+TGG + chr6_3:98647069-98647088 None:intergenic 40.0%
! TTTTCCCCAATTTATCACCG+TGG + chr6_3:98647103-98647122 None:intergenic 40.0%
AAAATAGCTGTATAGAGGGC+AGG - chr6_3:98647161-98647180 Msa0968320:intron 40.0%
AGAACTAGCATATAGAGCGT+AGG - chr6_3:98647201-98647220 Msa0968320:intron 40.0%
ATAGAGCGTAGGTAAGTAAG+TGG - chr6_3:98647212-98647231 Msa0968320:intron 40.0%
AGGTAAGTAAGTGGTGTCTA+AGG - chr6_3:98647221-98647240 Msa0968320:intron 40.0%
! AGTAGCATAGGGCATTCTAA+AGG + chr6_3:98647268-98647287 None:intergenic 40.0%
GTCAAGAAAACAACAAGGCA+AGG + chr6_3:98647463-98647482 None:intergenic 40.0%
GGTCTTCTACTATGTTAAGC+TGG - chr6_3:98647606-98647625 Msa0968320:intron 40.0%
TCCAAGTAGTTCCGTTACAA+TGG - chr6_3:98647777-98647796 Msa0968320:intron 40.0%
! TCCATTGTAACGGAACTACT+TGG + chr6_3:98647781-98647800 None:intergenic 40.0%
ATCTCATTGCTCCACTAATC+TGG + chr6_3:98648079-98648098 None:intergenic 40.0%
TATAGTAGCATAGGGCAGAA+AGG + chr6_3:98648105-98648124 None:intergenic 40.0%
GTCAAGAAAACAACAAGGCA+AGG + chr6_3:98647463-98647482 None:intergenic 40.0%
GGTCTTCTACTATGTTAAGC+TGG - chr6_3:98647606-98647625 Msa0968320:intron 40.0%
TCCAAGTAGTTCCGTTACAA+TGG - chr6_3:98647777-98647796 Msa0968320:intron 40.0%
! TCCATTGTAACGGAACTACT+TGG + chr6_3:98647781-98647800 None:intergenic 40.0%
ATCTCATTGCTCCACTAATC+TGG + chr6_3:98648079-98648098 None:intergenic 40.0%
TATAGTAGCATAGGGCAGAA+AGG + chr6_3:98648105-98648124 None:intergenic 40.0%
GTCAAGAAAACAACAAGGCA+AGG + chr6_3:98647463-98647482 None:intergenic 40.0%
GGTCTTCTACTATGTTAAGC+TGG - chr6_3:98647606-98647625 Msa0968320:intron 40.0%
TCCAAGTAGTTCCGTTACAA+TGG - chr6_3:98647777-98647796 Msa0968320:intron 40.0%
! TCCATTGTAACGGAACTACT+TGG + chr6_3:98647781-98647800 None:intergenic 40.0%
ATCTCATTGCTCCACTAATC+TGG + chr6_3:98648079-98648098 None:intergenic 40.0%
ATAGAAAGATTATTGGGGGG+GGG + chr6_3:98649788-98649807 None:intergenic 40.0%
CATAGAAAGATTATTGGGGG+GGG + chr6_3:98649789-98649808 None:intergenic 40.0%
CCATAGAAAGATTATTGGGG+GGG + chr6_3:98649790-98649809 None:intergenic 40.0%
! CACAACTTCCCTGATTTTCA+AGG + chr6_3:98649874-98649893 None:intergenic 40.0%
TGAAAATCAGGGAAGTTGTG+AGG - chr6_3:98649874-98649893 Msa0968320:intron 40.0%
! GAGGCATTTAATAGGTCATG+TGG - chr6_3:98649893-98649912 Msa0968320:intron 40.0%
CGGAAGCTATTTGGAAAATG+AGG - chr6_3:98649922-98649941 Msa0968320:intron 40.0%
CTTCAATGCACAACCAGTAT+TGG - chr6_3:98650057-98650076 Msa0968320:intron 40.0%
AAAATTCTTCCTCGTCTTGG+AGG - chr6_3:98650126-98650145 Msa0968320:intron 40.0%
AGAGAAAAGGGAGCAAATGA+CGG + chr6_3:98650201-98650220 None:intergenic 40.0%
GCAAAATCAGGAGAGAGAAA+AGG + chr6_3:98650214-98650233 None:intergenic 40.0%
! GCATCTTGGTTCTTTGGATT+TGG - chr6_3:98650242-98650261 Msa0968320:CDS 40.0%
! ATTAAGGGCATGGTTCTGTA+TGG - chr6_3:98650393-98650412 Msa0968320:exon 40.0%
!! GTTGTTTGTTCAGCTTTGGG+AGG + chr6_3:98645267-98645286 None:intergenic 45.0%
CTCGGTTGTTTGTTCAGCTT+TGG + chr6_3:98645271-98645290 None:intergenic 45.0%
GAGCAGCAGGATCATTATCT+TGG - chr6_3:98645288-98645307 Msa0968320:three_prime_UTR 45.0%
TTCCAAGGAGAACGAGGAAT+GGG + chr6_3:98645363-98645382 None:intergenic 45.0%
GATGAACGACATCAGTCTCT+TGG + chr6_3:98646027-98646046 None:intergenic 45.0%
CCTTAATAAGCAGTCCAACG+TGG + chr6_3:98646082-98646101 None:intergenic 45.0%
CCACGTTGGACTGCTTATTA+AGG - chr6_3:98646079-98646098 Msa0968320:intron 45.0%
GATACGTGCTAGGTCTTCTT+GGG - chr6_3:98646299-98646318 Msa0968320:intron 45.0%
TTGCTTCCATACAGCACACA+AGG + chr6_3:98646334-98646353 None:intergenic 45.0%
CGGCTATGATATGAAAGCCA+GGG + chr6_3:98646463-98646482 None:intergenic 45.0%
ACGGCTATGATATGAAAGCC+AGG + chr6_3:98646464-98646483 None:intergenic 45.0%
CCTCTAAATTGAACCTGCGA+CGG + chr6_3:98646495-98646514 None:intergenic 45.0%
! ACACTTTGGTTCATTCGGCT+TGG + chr6_3:98646669-98646688 None:intergenic 45.0%
GAGCGAACGAGTTTACACTT+TGG + chr6_3:98646683-98646702 None:intergenic 45.0%
AGTGCACCAAACTGAACAAC+TGG + chr6_3:98646750-98646769 None:intergenic 45.0%
! TTTTGAACGCCCGTATTGAG+TGG - chr6_3:98647032-98647051 Msa0968320:intron 45.0%
TTTGAACGCCCGTATTGAGT+GGG - chr6_3:98647033-98647052 Msa0968320:intron 45.0%
ATACCTTGCCCACTCAATAC+GGG + chr6_3:98647044-98647063 None:intergenic 45.0%
CTGGTAACATGTACGCTACA+AGG - chr6_3:98647127-98647146 Msa0968320:intron 45.0%
GTCTAAGGAGTAGAGTACAG+AGG - chr6_3:98647236-98647255 Msa0968320:intron 45.0%
GACAACAGCAGCCATATAGA+TGG + chr6_3:98647333-98647352 None:intergenic 45.0%
CACTCCCCAACATGCAAATT+AGG - chr6_3:98647585-98647604 Msa0968320:intron 45.0%
! GTAACGGAACTACTTGGACA+AGG + chr6_3:98647775-98647794 None:intergenic 45.0%
GACAACAGCAGCCATATAGA+TGG + chr6_3:98647333-98647352 None:intergenic 45.0%
CACTCCCCAACATGCAAATT+AGG - chr6_3:98647585-98647604 Msa0968320:intron 45.0%
! GTAACGGAACTACTTGGACA+AGG + chr6_3:98647775-98647794 None:intergenic 45.0%
GACAACAGCAGCCATATAGA+TGG + chr6_3:98647333-98647352 None:intergenic 45.0%
CACTCCCCAACATGCAAATT+AGG - chr6_3:98647585-98647604 Msa0968320:intron 45.0%
! GTAACGGAACTACTTGGACA+AGG + chr6_3:98647775-98647794 None:intergenic 45.0%
TAGAAAGATTATTGGGGGGG+GGG + chr6_3:98649787-98649806 None:intergenic 45.0%
CCCCCCCAATAATCTTTCTA+TGG - chr6_3:98649787-98649806 Msa0968320:intron 45.0%
GCAGCGTGAACATTATGAGT+TGG - chr6_3:98649946-98649965 Msa0968320:intron 45.0%
GTCTGTGCTCTTTGTCAAGA+AGG - chr6_3:98650001-98650020 Msa0968320:intron 45.0%
GGGGGAATCATAACCAATAC+TGG + chr6_3:98650073-98650092 None:intergenic 45.0%
!! GTATTGGTTATGATTCCCCC+AGG - chr6_3:98650073-98650092 Msa0968320:intron 45.0%
CTAGTCATAAAACAAGGGGC+CGG + chr6_3:98650535-98650554 None:intergenic 45.0%
GAGGACTTGCCTCTTCTTCT+TGG + chr6_3:98645221-98645240 None:intergenic 50.0%
!! GTTTGTTCAGCTTTGGGAGG+TGG + chr6_3:98645264-98645283 None:intergenic 50.0%
TGAACAAACAACCGAGCAGC+AGG - chr6_3:98645275-98645294 Msa0968320:three_prime_UTR 50.0%
GTTCCAAGGAGAACGAGGAA+TGG + chr6_3:98645364-98645383 None:intergenic 50.0%
GGTTGAACTGGATACGTGCT+AGG - chr6_3:98646289-98646308 Msa0968320:intron 50.0%
GGATACGTGCTAGGTCTTCT+TGG - chr6_3:98646298-98646317 Msa0968320:intron 50.0%
CAGTGATTGCCAAATGTCCC+AGG + chr6_3:98646379-98646398 None:intergenic 50.0%
GTTGGAATTGTCTTGCACCC+TGG - chr6_3:98646443-98646462 Msa0968320:intron 50.0%
! ACCTGCGACGGATTTCAGTA+CGG + chr6_3:98646483-98646502 None:intergenic 50.0%
CCGTCGCAGGTTCAATTTAG+AGG - chr6_3:98646492-98646511 Msa0968320:intron 50.0%
! TGATTTGTGATGTGGCTGCG+AGG - chr6_3:98646577-98646596 Msa0968320:intron 50.0%
TGGCTGCGAGGAAGAATTGT+AGG - chr6_3:98646589-98646608 Msa0968320:intron 50.0%
AGGCAGGGGTGGTCAAAATT+TGG - chr6_3:98646629-98646648 Msa0968320:intron 50.0%
ATAGAGGGCAGGCAAGTAAG+TGG - chr6_3:98647172-98647191 Msa0968320:intron 50.0%
GGAGTAGAGTACAGAGGTCA+AGG - chr6_3:98647242-98647261 Msa0968320:intron 50.0%
AGAAAGATTATTGGGGGGGG+GGG + chr6_3:98649786-98649805 None:intergenic 50.0%
! AATAGGTCATGTGGGTGCTG+CGG - chr6_3:98649902-98649921 Msa0968320:intron 50.0%
TGTGCATTGAAGCCAGGATG+AGG + chr6_3:98650049-98650068 None:intergenic 50.0%
ACTGGTTGTGCATTGAAGCC+AGG + chr6_3:98650055-98650074 None:intergenic 50.0%
AGAATAGCACCTCCAAGACG+AGG + chr6_3:98650138-98650157 None:intergenic 50.0%
TATCTTGGATGGACCGCCGA+TGG - chr6_3:98645303-98645322 Msa0968320:three_prime_UTR 55.0%
ATCTTGGATGGACCGCCGAT+GGG - chr6_3:98645304-98645323 Msa0968320:three_prime_UTR 55.0%
ATGACGCTTCCATGGCCCAT+CGG + chr6_3:98645333-98645352 None:intergenic 55.0%
!! ATGGGCCATGGAAGCGTCAT+GGG - chr6_3:98645333-98645352 Msa0968320:three_prime_UTR 55.0%
AGCCCATTCCTCGTTCTCCT+TGG - chr6_3:98645358-98645377 Msa0968320:three_prime_UTR 55.0%
GAGGAGTTCCAAGGAGAACG+AGG + chr6_3:98645369-98645388 None:intergenic 55.0%
TTGGCCAAGACAAGCGCAGA+CGG + chr6_3:98645391-98645410 None:intergenic 55.0%
TTGTGGACCTCCTTCGTACG+TGG - chr6_3:98645785-98645804 Msa0968320:intron 55.0%
GCTAGGTCTTCTTGGGAGTG+TGG - chr6_3:98646306-98646325 Msa0968320:intron 55.0%
GTGGCTCCTTGTGTGCTGTA+TGG - chr6_3:98646325-98646344 Msa0968320:intron 55.0%
AAAGATTATTGGGGGGGGGG+GGG + chr6_3:98649784-98649803 None:intergenic 55.0%
GAAAGATTATTGGGGGGGGG+GGG + chr6_3:98649785-98649804 None:intergenic 55.0%
! TGGGTGCTGCGGAAGCTATT+TGG - chr6_3:98649913-98649932 Msa0968320:intron 55.0%
! AGCCAGGATGAGGCACTCTA+CGG + chr6_3:98650039-98650058 None:intergenic 55.0%
!! ACCCATGGTTTGCTCTCCTG+GGG + chr6_3:98650092-98650111 None:intergenic 55.0%
!! GACCCATGGTTTGCTCTCCT+GGG + chr6_3:98650093-98650112 None:intergenic 55.0%
GAGAGCAAACCATGGGTCGT+GGG - chr6_3:98650095-98650114 Msa0968320:intron 55.0%
AGAGCAAACCATGGGTCGTG+GGG - chr6_3:98650096-98650115 Msa0968320:intron 55.0%
ATGGCCCATCGGAAGCCCAT+CGG + chr6_3:98645322-98645341 None:intergenic 60.0%
!! GATGGGCCATGGAAGCGTCA+TGG - chr6_3:98645332-98645351 Msa0968320:three_prime_UTR 60.0%
GCTGACCCATGACGCTTCCA+TGG + chr6_3:98645341-98645360 None:intergenic 60.0%
TCCTCCGTCTGCGCTTGTCT+TGG - chr6_3:98645384-98645403 Msa0968320:three_prime_UTR 60.0%
! TGGTGGACCACGTACGAAGG+AGG + chr6_3:98645795-98645814 None:intergenic 60.0%
!! CCATGGTGGACCACGTACGA+AGG + chr6_3:98645798-98645817 None:intergenic 60.0%
CCTTCGTACGTGGTCCACCA+TGG - chr6_3:98645795-98645814 Msa0968320:intron 60.0%
GCCGTACTGAAATCCGTCGC+AGG - chr6_3:98646479-98646498 Msa0968320:intron 60.0%
AGGTGACCAGAAGCCCTGAG+AGG - chr6_3:98646609-98646628 Msa0968320:intron 60.0%
ACCAGAAGCCCTGAGAGGCA+GGG - chr6_3:98646614-98646633 Msa0968320:intron 60.0%
TTGACCACCCCTGCCTCTCA+GGG + chr6_3:98646625-98646644 None:intergenic 60.0%
TTTGACCACCCCTGCCTCTC+AGG + chr6_3:98646626-98646645 None:intergenic 60.0%
ACGCCCGTATTGAGTGGGCA+AGG - chr6_3:98647038-98647057 Msa0968320:intron 60.0%
AAGATTATTGGGGGGGGGGG+GGG + chr6_3:98649783-98649802 None:intergenic 60.0%
! CAGGATGAGGCACTCTACGG+CGG + chr6_3:98650036-98650055 None:intergenic 60.0%
TCCCCCAGGAGAGCAAACCA+TGG - chr6_3:98650087-98650106 Msa0968320:intron 60.0%
!! CCCATGGTTTGCTCTCCTGG+GGG + chr6_3:98650091-98650110 None:intergenic 60.0%
CCCCCAGGAGAGCAAACCAT+GGG - chr6_3:98650088-98650107 Msa0968320:intron 60.0%
!! CGACCCATGGTTTGCTCTCC+TGG + chr6_3:98650094-98650113 None:intergenic 60.0%
GGAGAGCAAACCATGGGTCG+TGG - chr6_3:98650094-98650113 Msa0968320:intron 60.0%
TCTTCAAGCCCCACGACCCA+TGG + chr6_3:98650107-98650126 None:intergenic 60.0%
! ACCGCCGATGGGCTTCCGAT+GGG - chr6_3:98645315-98645334 Msa0968320:three_prime_UTR 65.0%
! GATGGGCTTCCGATGGGCCA+TGG - chr6_3:98645321-98645340 Msa0968320:three_prime_UTR 65.0%
GCGCAGACGGAGGAGTTCCA+AGG + chr6_3:98645378-98645397 None:intergenic 65.0%
GCCAAGACAAGCGCAGACGG+AGG + chr6_3:98645388-98645407 None:intergenic 65.0%
GACCAGAAGCCCTGAGAGGC+AGG - chr6_3:98646613-98646632 Msa0968320:intron 65.0%
CCAGAAGCCCTGAGAGGCAG+GGG - chr6_3:98646615-98646634 Msa0968320:intron 65.0%
AGATTATTGGGGGGGGGGGG+GGG + chr6_3:98649782-98649801 None:intergenic 65.0%
! CGCCGTAGAGTGCCTCATCC+TGG - chr6_3:98650034-98650053 Msa0968320:intron 65.0%
! GACCGCCGATGGGCTTCCGA+TGG - chr6_3:98645314-98645333 Msa0968320:three_prime_UTR 70.0%
GCCCATCGGAAGCCCATCGG+CGG + chr6_3:98645319-98645338 None:intergenic 70.0%
CCCCTGCCTCTCAGGGCTTC+TGG + chr6_3:98646618-98646637 None:intergenic 70.0%
GAAGCCCTGAGAGGCAGGGG+TGG - chr6_3:98646618-98646637 Msa0968320:intron 70.0%
GATTATTGGGGGGGGGGGGG+GGG + chr6_3:98649781-98649800 None:intergenic 70.0%
! GGGGGGGGGGGGGGGCAGAA+AGG + chr6_3:98649773-98649792 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 98645025 98650577 98645025 ID=Msa0968320;Name=Msa0968320
chr6_3 mRNA 98645025 98650577 98645025 ID=Msa0968320-mRNA-1;Parent=Msa0968320;Name=Msa0968320-mRNA-1;_AED=0.06;_eAED=0.06;_QI=167|1|1|1|1|1|3|454|231
chr6_3 exon 98645025 98645718 98645025 ID=Msa0968320-mRNA-1:exon:18553;Parent=Msa0968320-mRNA-1
chr6_3 exon 98649089 98649291 98649089 ID=Msa0968320-mRNA-1:exon:18552;Parent=Msa0968320-mRNA-1
chr6_3 exon 98650158 98650577 98650158 ID=Msa0968320-mRNA-1:exon:18551;Parent=Msa0968320-mRNA-1
chr6_3 five_prime_UTR 98650411 98650577 98650411 ID=Msa0968320-mRNA-1:five_prime_utr;Parent=Msa0968320-mRNA-1
chr6_3 CDS 98650158 98650410 98650158 ID=Msa0968320-mRNA-1:cds;Parent=Msa0968320-mRNA-1
chr6_3 CDS 98649089 98649291 98649089 ID=Msa0968320-mRNA-1:cds;Parent=Msa0968320-mRNA-1
chr6_3 CDS 98645479 98645718 98645479 ID=Msa0968320-mRNA-1:cds;Parent=Msa0968320-mRNA-1
chr6_3 three_prime_UTR 98645025 98645478 98645025 ID=Msa0968320-mRNA-1:three_prime_utr;Parent=Msa0968320-mRNA-1
Gene Sequence

>Msa0968320

ATGGCTGAAGAGAAAAAACTCAATCACCAAGAAGAAGAGGCAAGTCCTCTTCTCAAACAACAACAACAACCACCTCCCAAAGCTGAACAAACAACCGAGCAGCAGGATCATTATCTTGGATGGACCGCCGATGGGCTTCCGATGGGCCATGGAAGCGTCATGGGTCAGCCCATTCCTCGTTCTCCTTGGAACTCCTCCGTCTGCGCTTGTCTTGGCCAAAACGATCACTTTTGCAGCAGCGATCTTGAAGTTTGTCTTCTTGGGAGTGTGGCTCCTTGTGTGCTGTATGGAAGCAATATGGAGAGACTTCATTCTAATCCTGGGACATTTGGCAATCACTGTTTGCATTATTCTGGACTGTATGTGATTGGGAATTCATGCTTTGGTTGGAATTGTCTTGCACCCTGGCTTTCATATCATAGCCGTACTGAAATCCGTCGCAGGTTCAATTTAGAGGGAAGTTGTGAGGCATTTAATAGGTCATGTGGGTGCTGCGGAAGCTATTTGGAAAATGAGGAGCAGCGTGAACATTATGAGTTGGCATGTGACTTTGCAACTCATGTCTTCTGTCATGTCTGTGCTCTTTGTCAAGAAGGTCGTGAGCTCCGCCGTAGAGTGCCTCATCCTGGCTTCAATGCACAACCAGTATTGGTTATGATTCCCCCAGGAGAGCAAACCATGGGTCGTGGGGCTTGA

Protein sequence

>Msa0968320

MAEEKKLNHQEEEASPLLKQQQQPPPKAEQTTEQQDHYLGWTADGLPMGHGSVMGQPIPRSPWNSSVCACLGQNDHFCSSDLEVCLLGSVAPCVLYGSNMERLHSNPGTFGNHCLHYSGLYVIGNSCFGWNCLAPWLSYHSRTEIRRRFNLEGSCEAFNRSCGCCGSYLENEEQREHYELACDFATHVFCHVCALCQEGRELRRRVPHPGFNAQPVLVMIPPGEQTMGRGA*