AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0038350


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0038350 MtrunA17_Chr1g0201891 99.304 431 3 0 1 431 1 431 0.0 894
Msa0038350 MtrunA17_Chr2g0278511 80.460 435 73 5 1 431 1 427 0.0 703
Msa0038350 MtrunA17_Chr2g0286441 58.073 384 137 5 48 431 34 393 1.09e-157 451
Msa0038350 MtrunA17_Chr5g0404321 53.636 440 171 11 1 431 1 416 1.39e-154 444
Msa0038350 MtrunA17_Chr8g0373001 51.708 439 177 12 1 431 1 412 7.13e-146 421
Msa0038350 MtrunA17_Chr1g0155301 48.690 458 172 9 1 431 1 422 8.31e-146 421
Msa0038350 MtrunA17_Chr1g0196071 50.801 437 174 10 1 431 1 402 5.40e-145 419
Msa0038350 MtrunA17_Chr2g0315641 47.781 383 149 6 50 431 39 371 8.81e-120 353
Msa0038350 MtrunA17_Chr2g0315651 43.377 385 162 10 51 431 35 367 5.80e-96 292
Msa0038350 MtrunA17_Chr8g0373361 42.857 427 197 13 15 424 9 405 7.70e-94 288
Msa0038350 MtrunA17_Chr8g0373331 35.862 435 181 17 1 424 1 348 2.87e-72 231
Msa0038350 MtrunA17_Chr1g0156151 46.544 217 97 6 1 207 1 208 1.34e-56 186
Msa0038350 MtrunA17_Chr8g0373351 32.143 392 131 12 48 423 14 286 2.26e-44 156
Msa0038350 MtrunA17_Chr8g0373341 34.221 263 116 7 1 235 1 234 1.53e-28 114
Msa0038350 MtrunA17_Chr8g0373341 45.098 102 41 3 322 421 232 320 6.83e-17 81.3
Msa0038350 MtrunA17_Chr3g0091401 40.404 99 52 2 95 193 8 99 3.78e-14 68.6
Msa0038350 MtrunA17_Chr2g0334041 36.207 116 47 4 321 430 265 359 2.66e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0038350 AT1G76900.2 70.330 455 111 9 1 431 1 455 0.0 610
Msa0038350 AT1G76900.1 70.330 455 111 9 1 431 1 455 0.0 610
Msa0038350 AT1G76900.3 70.330 455 111 9 1 431 1 455 0.0 610
Msa0038350 AT1G43640.1 68.027 441 119 6 1 431 1 429 0.0 600
Msa0038350 AT1G25280.1 70.179 446 117 7 1 431 1 445 0.0 596
Msa0038350 AT1G43640.2 70.053 374 94 4 65 431 1 363 0.0 536
Msa0038350 AT2G47900.2 53.596 431 175 4 1 431 1 406 2.57e-165 471
Msa0038350 AT2G47900.1 53.596 431 175 4 1 431 1 406 2.57e-165 471
Msa0038350 AT2G47900.3 53.472 432 175 5 1 431 1 407 8.64e-164 467
Msa0038350 AT2G18280.2 53.288 441 148 12 1 431 1 393 3.66e-150 432
Msa0038350 AT2G18280.1 53.288 441 148 12 1 431 1 393 3.66e-150 432
Msa0038350 AT1G47270.3 55.181 386 135 5 48 431 39 388 4.34e-142 411
Msa0038350 AT1G47270.1 55.181 386 135 5 48 431 64 413 8.42e-142 411
Msa0038350 AT1G47270.2 55.181 386 135 5 48 431 63 412 1.02e-141 411
Msa0038350 AT5G18680.1 50.777 386 156 7 49 431 35 389 1.51e-130 382
Msa0038350 AT3G06380.1 51.706 381 149 9 53 431 33 380 5.19e-127 372
Msa0038350 AT1G25280.3 69.776 268 71 6 173 431 1 267 3.58e-123 358
Msa0038350 AT1G25280.2 69.776 268 71 6 173 431 1 267 3.58e-123 358
Msa0038350 AT1G53320.1 47.520 383 156 5 50 431 41 379 2.29e-118 350
Msa0038350 AT5G18680.2 51.227 326 126 6 108 431 3 297 3.57e-106 316
Msa0038350 AT3G06380.2 51.420 317 120 8 116 431 5 288 4.15e-99 298
Msa0038350 AT1G61940.2 55.814 86 38 0 56 141 1 86 2.79e-28 112
Msa0038350 AT1G61940.1 59.375 64 26 0 56 119 1 64 8.74e-20 88.6

Find 144 sgRNAs with CRISPR-Local

Find 257 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAATGAGCTCTGGCTGGCC+TGG 0.187108 1_1:+67788647 None:intergenic
ATACCCTCTCTCGGCCTTTC+AGG 0.201509 1_1:-67788243 Msa0038350:CDS
GCAGCATTGCTTGTTGAAAA+TGG 0.220754 1_1:-67789443 Msa0038350:intron
GTATTTGCTAAAACATAAAA+AGG 0.249597 1_1:-67791403 Msa0038350:intron
GGGCCATGTTCAAAAGAAAA+AGG 0.265901 1_1:+67788008 None:intergenic
CATCCTATGAATTCCTAAAA+TGG 0.266277 1_1:+67788129 None:intergenic
ATGTTGGTGCCTTAACTTTA+GGG 0.281753 1_1:-67788444 Msa0038350:CDS
AATGTTGGTGCCTTAACTTT+AGG 0.285851 1_1:-67788445 Msa0038350:CDS
CTTTCCGATGTAAGTGTTAC+TGG 0.296608 1_1:+67789334 None:intergenic
CTGTAGGTTCTCAGATATAA+TGG 0.306980 1_1:-67788552 Msa0038350:CDS
CTCACCTGCTTCAGAGAAAC+AGG 0.315099 1_1:+67790278 None:intergenic
TTAAATCATAACTTACATAA+AGG 0.320718 1_1:+67787985 None:intergenic
CCAAACTTCAATGATAAATA+AGG 0.326259 1_1:+67791218 None:intergenic
AAATCTGGGTCTGGAAGTTT+CGG 0.334850 1_1:+67791553 None:intergenic
GAATGAGCTCTGGCTGGCCT+GGG 0.345465 1_1:+67788648 None:intergenic
GCCAGCTGAGCATTGTTATA+GGG 0.349030 1_1:+67788851 None:intergenic
CATGGGCTGTTCTGTATAAC+TGG 0.352285 1_1:+67790473 None:intergenic
AGCCAGCTGAGCATTGTTAT+AGG 0.353413 1_1:+67788850 None:intergenic
TAAATCATAACTTACATAAA+GGG 0.359283 1_1:+67787986 None:intergenic
GTCGCTCCTCATGCCGCAAC+AGG 0.364636 1_1:-67788359 Msa0038350:CDS
CCTTATTTATCATTGAAGTT+TGG 0.367982 1_1:-67791218 Msa0038350:five_prime_UTR
CGTGATGTGAGGGATGGATT+TGG 0.379788 1_1:-67790587 Msa0038350:CDS
TCATTGAAGTTTGGTGTTTG+AGG 0.387907 1_1:-67791209 Msa0038350:intron
CTCTTCCTTTGCCTCAGTCC+TGG 0.393245 1_1:-67789897 Msa0038350:intron
TTCCAATACACTGACAGTTT+CGG 0.405986 1_1:+67790634 None:intergenic
TTCCGAAACTGTCAGTGTAT+TGG 0.407688 1_1:-67790636 Msa0038350:five_prime_UTR
GAAAGAATCCTCAAGATTGC+GGG 0.410283 1_1:+67788625 None:intergenic
CTCTGTGCAAGTCGTTCTTC+TGG 0.410800 1_1:+67789394 None:intergenic
TACTTTACAATTTAACTATG+AGG 0.421934 1_1:+67788080 None:intergenic
GCATGAGGAGCGACAGGTGC+AGG 0.424142 1_1:+67788368 None:intergenic
TAACTGCCACTAGGGACCTT+TGG 0.430993 1_1:+67788785 None:intergenic
TAGATTAGATGAAGAGAAAG+AGG 0.431184 1_1:+67791659 None:intergenic
TCGTGATGTTATTAAGAGAT+TGG 0.435663 1_1:-67790426 Msa0038350:CDS
TTTCCCTGTTTCTCTGAAGC+AGG 0.440467 1_1:-67790282 Msa0038350:intron
TGCAGTTGTTCATGCCATCT+AGG 0.445754 1_1:+67788467 None:intergenic
GACAAGATTATTCTTCAGTT+CGG 0.446887 1_1:-67788302 Msa0038350:CDS
AATGCTCAGCTGGCTCCTCC+TGG 0.452432 1_1:-67788842 Msa0038350:CDS
CCCGCTTCATCCCTCGAGCC+TGG 0.453190 1_1:-67788680 Msa0038350:CDS
AAGGCTTCCTGGACATCAAA+GGG 0.458001 1_1:-67790537 Msa0038350:CDS
CACAGAGTATGTTATATCAA+TGG 0.458685 1_1:-67789378 Msa0038350:CDS
GAGCCTGGTGGTGTTGTCCC+AGG 0.458781 1_1:-67788665 Msa0038350:CDS
TGTGCTGGCTGCGACGGAGC+AGG 0.465017 1_1:+67788335 None:intergenic
TGGAAGCAACTGAGAGTACT+TGG 0.468061 1_1:-67790406 Msa0038350:CDS
ACATTGGGAAGAGATTGTTT+TGG 0.470443 1_1:+67788052 None:intergenic
TGTAGGTTCTCAGATATAAT+GGG 0.470818 1_1:-67788551 Msa0038350:CDS
AGATTGCGGGGAATGAGCTC+TGG 0.475959 1_1:+67788638 None:intergenic
TGTATCATAAATTATGAACT+TGG 0.479777 1_1:+67788880 None:intergenic
TCCCTATAACAATGCTCAGC+TGG 0.484175 1_1:-67788852 Msa0038350:CDS
AAGGGGCAAGTCGCGTAGTT+CGG 0.484348 1_1:-67790519 Msa0038350:CDS
TGCGGGGAATGAGCTCTGGC+TGG 0.484831 1_1:+67788642 None:intergenic
GACTTGCCCCTTTGATGTCC+AGG 0.489493 1_1:+67790530 None:intergenic
ACCTATGAGTTGAATGTCCT+TGG 0.490286 1_1:-67788746 Msa0038350:CDS
TTGTCATGGTCTGACTGTGC+TGG 0.490534 1_1:+67788320 None:intergenic
CCAGGCTCGAGGGATGAAGC+GGG 0.492821 1_1:+67788680 None:intergenic
TGAAGACGAGGAGGAGGGGA+AGG 0.493522 1_1:-67788519 Msa0038350:CDS
TCACACGTCCCCTAAAGTTA+AGG 0.494461 1_1:+67788435 None:intergenic
TGGCAATGAAGACGAGGAGG+AGG 0.494605 1_1:-67788525 Msa0038350:CDS
ACCAAGGACATTCAACTCAT+AGG 0.504041 1_1:+67788745 None:intergenic
TTGAATCTACGGCTGCGTCC+AGG 0.511465 1_1:+67788824 None:intergenic
TTAAGAACAAGTCTCCTAGA+TGG 0.514190 1_1:-67788481 Msa0038350:CDS
GTTGCGGCATGAGGAGCGAC+AGG 0.514556 1_1:+67788362 None:intergenic
TCTGACTGTGCTGGCTGCGA+CGG 0.514689 1_1:+67788329 None:intergenic
AAAAGAAAGAAACAAGAGGT+AGG 0.515304 1_1:+67791606 None:intergenic
GCAGGTCCTGTTGCGGCATG+AGG 0.520662 1_1:+67788353 None:intergenic
CATTCAACTCATAGGTGACC+TGG 0.520911 1_1:+67788753 None:intergenic
TGGCCTGGGACAACACCACC+AGG 0.526446 1_1:+67788662 None:intergenic
GAGGTTGATCATGCAACTCA+TGG 0.527376 1_1:+67790495 None:intergenic
CAGGACTGAGGCAAAGGAAG+AGG 0.529546 1_1:+67789898 None:intergenic
TTCTCAGATATAATGGGAGC+TGG 0.533677 1_1:-67788545 Msa0038350:CDS
CCCATGGGCTAGCCTTCCAC+CGG 0.534682 1_1:-67790456 Msa0038350:CDS
ACACTTACATCGGAAAGCTT+AGG 0.535916 1_1:-67789328 Msa0038350:intron
AAATCATAACTTACATAAAG+GGG 0.537842 1_1:+67787987 None:intergenic
GCGATGTTGTAACTGCCACT+AGG 0.538385 1_1:+67788776 None:intergenic
GTAGTATTGTTCGTGATGTG+AGG 0.542989 1_1:-67790598 Msa0038350:CDS
CACGAAGAAGCTCCGGTGGA+AGG 0.548406 1_1:+67790444 None:intergenic
ACCAGGCTCGAGGGATGAAG+CGG 0.552625 1_1:+67788679 None:intergenic
TCCGGTGGAAGGCTAGCCCA+TGG 0.553438 1_1:+67790455 None:intergenic
TAAGGCTTCCTGGACATCAA+AGG 0.555010 1_1:-67790538 Msa0038350:CDS
ATTCTTCAGTTCGGTAAAGT+CGG 0.555879 1_1:-67788293 Msa0038350:CDS
TTCGTGGGCCTCTAGTACCA+AGG 0.556399 1_1:+67788729 None:intergenic
GCTTACCAGGACTGAGGCAA+AGG 0.556568 1_1:+67789892 None:intergenic
GCTCATTCCCCGCAATCTTG+AGG 0.558110 1_1:-67788633 Msa0038350:CDS
TTACAGCCGGGGTATAGGGA+TGG 0.560354 1_1:-67789969 Msa0038350:intron
ATAGTGCAATTCATCCTTCG+TGG 0.560544 1_1:+67788713 None:intergenic
ACATATCGCAAAAGCCTGAA+AGG 0.562316 1_1:+67788229 None:intergenic
ATAACATCACGAAGAAGCTC+CGG 0.562691 1_1:+67790437 None:intergenic
GGACAACACCACCAGGCTCG+AGG 0.563929 1_1:+67788669 None:intergenic
CGATGTTGTAACTGCCACTA+GGG 0.565087 1_1:+67788777 None:intergenic
GTGCTGCGGTCTGCAAGTCG+TGG 0.571719 1_1:-67790358 Msa0038350:CDS
GCAACTGAGAGTACTTGGCC+TGG 0.572741 1_1:-67790401 Msa0038350:CDS
ATTGTTCGTGATGTGAGGGA+TGG 0.573863 1_1:-67790593 Msa0038350:CDS
CCGGTGGAAGGCTAGCCCAT+GGG 0.574926 1_1:+67790456 None:intergenic
TTGAATGTCCTTGGTACTAG+AGG 0.577348 1_1:-67788737 Msa0038350:CDS
GGCAATGAAGACGAGGAGGA+GGG 0.579076 1_1:-67788524 Msa0038350:CDS
ACTGAAGAATAATCTTGTCA+TGG 0.579174 1_1:+67788306 None:intergenic
GGCATGAACAACTGCAATGT+TGG 0.579920 1_1:-67788460 Msa0038350:CDS
GCAATGAAGACGAGGAGGAG+GGG 0.583215 1_1:-67788523 Msa0038350:CDS
GACTTGTTCTTAAGAACTAG+AGG 0.583735 1_1:+67788491 None:intergenic
GACTGAGGCAAAGGAAGAGG+TGG 0.586469 1_1:+67789901 None:intergenic
TCAACACTCTTGAATACTGT+GGG 0.587893 1_1:-67790313 Msa0038350:CDS
CAGTTATACAGAACAGCCCA+TGG 0.589286 1_1:-67790472 Msa0038350:CDS
CGACGGAGCAGGTCCTGTTG+CGG 0.591288 1_1:+67788346 None:intergenic
GGAAAGAATCCTCAAGATTG+CGG 0.599386 1_1:+67788624 None:intergenic
TAGTGCAATTCATCCTTCGT+GGG 0.600652 1_1:+67788714 None:intergenic
TGTTGGTGCCTTAACTTTAG+GGG 0.601599 1_1:-67788443 Msa0038350:CDS
CAACTGAGTTTAGCAGCTGT+AGG 0.602372 1_1:-67788568 Msa0038350:CDS
TTTGTCACAAAAGACACTCA+AGG 0.608290 1_1:+67790664 None:intergenic
AATCATAACTTACATAAAGG+GGG 0.613988 1_1:+67787988 None:intergenic
GTTATCGATCGATCGTGCAA+AGG 0.614484 1_1:+67788592 None:intergenic
GACAACACCACCAGGCTCGA+GGG 0.616356 1_1:+67788670 None:intergenic
GTCAACACTCTTGAATACTG+TGG 0.616544 1_1:-67790314 Msa0038350:CDS
GTTGTGACTTGTAACTAGAG+TGG 0.617694 1_1:-67790697 Msa0038350:five_prime_UTR
TAGTATTGTTCGTGATGTGA+GGG 0.622920 1_1:-67790597 Msa0038350:CDS
GGACTATCGATACCCTCTCT+CGG 0.623014 1_1:-67788252 Msa0038350:CDS
AAAGCCTGAAAGGCCGAGAG+AGG 0.624015 1_1:+67788239 None:intergenic
TCAGTTCGGTAAAGTCGGCA+AGG 0.626177 1_1:-67788288 Msa0038350:CDS
AGCTGAGCATTGTTATAGGG+AGG 0.628040 1_1:+67788854 None:intergenic
GCAACCACATGCTTACGACC+AGG 0.629724 1_1:+67790383 None:intergenic
AGATCCAGTAACACTTACAT+CGG 0.632514 1_1:-67789338 Msa0038350:CDS
CAGGCTCGAGGGATGAAGCG+GGG 0.635955 1_1:+67788681 None:intergenic
GCATGTGGTTGCTTGTGCTG+CGG 0.636839 1_1:-67790372 Msa0038350:CDS
TGGCAGTTACAACATCGCCC+AGG 0.640405 1_1:-67788771 Msa0038350:CDS
ATCGTGCAAAGGATAAACTA+CGG 0.641987 1_1:+67788603 None:intergenic
ACATCACGAAGAAGCTCCGG+TGG 0.646205 1_1:+67790440 None:intergenic
ATTCAACTCATAGGTGACCT+GGG 0.649004 1_1:+67788754 None:intergenic
AAGCCTGAAAGGCCGAGAGA+GGG 0.649007 1_1:+67788240 None:intergenic
CGGCAAGGATATGTTTACGA+TGG 0.649091 1_1:-67788273 Msa0038350:CDS
GCTTCATCCCTCGAGCCTGG+TGG 0.650835 1_1:-67788677 Msa0038350:CDS
AGCTGGCAATGAAGACGAGG+AGG 0.651988 1_1:-67788528 Msa0038350:CDS
ATGGATTTGGAAGCTTATCG+AGG 0.653763 1_1:-67790574 Msa0038350:CDS
GGGAGCTGGCAATGAAGACG+AGG 0.656703 1_1:-67788531 Msa0038350:CDS
GGGCTGTTCTGTATAACTGG+AGG 0.657426 1_1:+67790476 None:intergenic
AAAGAATCCTCAAGATTGCG+GGG 0.658101 1_1:+67788626 None:intergenic
AGTTATACAGAACAGCCCAT+GGG 0.669811 1_1:-67790471 Msa0038350:CDS
TTGGCCTGGTCGTAAGCATG+TGG 0.677764 1_1:-67790387 Msa0038350:CDS
AATCTACGGCTGCGTCCAGG+AGG 0.679597 1_1:+67788827 None:intergenic
GTTTCACCAAAGGTCCCTAG+TGG 0.689726 1_1:-67788791 Msa0038350:CDS
GATTTGGAAGCTTATCGAGG+CGG 0.694204 1_1:-67790571 Msa0038350:CDS
ATGGGTCCATCCCTATACCC+CGG 0.704486 1_1:+67789963 None:intergenic
AGGCTTCCTGGACATCAAAG+GGG 0.710405 1_1:-67790536 Msa0038350:CDS
AGTAAAGCTTACCAGGACTG+AGG 0.714219 1_1:+67789886 None:intergenic
TCACCTGCTTCAGAGAAACA+GGG 0.717293 1_1:+67790279 None:intergenic
TTGGTACTAGAGGCCCACGA+AGG 0.736988 1_1:-67788727 Msa0038350:CDS
ATAGTGACAAGAGATACATG+TGG 0.812071 1_1:-67788174 Msa0038350:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTGTGAAATTTATATTT+GGG - chr1_1:67788081-67788100 Msa0038350:three_prime_UTR 10.0%
!!! GATTTTGTGAAATTTATATT+TGG - chr1_1:67788080-67788099 Msa0038350:three_prime_UTR 15.0%
!!! CTGTTTTTTTTTAGATAAAA+AGG - chr1_1:67788170-67788189 Msa0038350:three_prime_UTR 15.0%
!! AAAATTAAACAACTTATCAA+AGG + chr1_1:67788543-67788562 None:intergenic 15.0%
!! TAAATCATAACTTACATAAA+GGG + chr1_1:67791564-67791583 None:intergenic 15.0%
!! TTAAATCATAACTTACATAA+AGG + chr1_1:67791565-67791584 None:intergenic 15.0%
!! TTAAAAAAGAAAGAAACAAG+AGG + chr1_1:67787948-67787967 None:intergenic 20.0%
!! AATCAGAAGAAAAAAAATCT+GGG + chr1_1:67788011-67788030 None:intergenic 20.0%
!! AAATCAGAAGAAAAAAAATC+TGG + chr1_1:67788012-67788031 None:intergenic 20.0%
!!! CAGTTTTTTTACAGTTTTTT+TGG - chr1_1:67788110-67788129 Msa0038350:three_prime_UTR 20.0%
!!! GTATTTGCTAAAACATAAAA+AGG - chr1_1:67788144-67788163 Msa0038350:three_prime_UTR 20.0%
!! AAAAGATGTTAAAAAACAAG+TGG - chr1_1:67789316-67789335 Msa0038350:intron 20.0%
!! TTATAATATTTAGTGTGCAA+CGG + chr1_1:67789508-67789527 None:intergenic 20.0%
!!! ATATTATAAAATTTAGAGCC+TGG - chr1_1:67789519-67789538 Msa0038350:intron 20.0%
!! AAGCACATAAATGAAAAATT+AGG + chr1_1:67789545-67789564 None:intergenic 20.0%
!! ATCAAATCAAATAGTGTATT+AGG + chr1_1:67789696-67789715 None:intergenic 20.0%
!!! AGAAACTTTTCATTTTCATA+TGG + chr1_1:67789935-67789954 None:intergenic 20.0%
!! CGTTAAATTCATATTTATGA+GGG + chr1_1:67790036-67790055 None:intergenic 20.0%
!! TCGTTAAATTCATATTTATG+AGG + chr1_1:67790037-67790056 None:intergenic 20.0%
!!! ATTTAACGAATTTTTAGATC+TGG - chr1_1:67790048-67790067 Msa0038350:intron 20.0%
!!! TGAATTTAATTTGTATGCAT+TGG - chr1_1:67790366-67790385 Msa0038350:CDS 20.0%
!! TTTAAATAGTGAGATCTAAT+TGG - chr1_1:67790475-67790494 Msa0038350:CDS 20.0%
!! TTAAATAGTGAGATCTAATT+GGG - chr1_1:67790476-67790495 Msa0038350:CDS 20.0%
!!! TTTTTCGTAAAGTAATTCTT+GGG + chr1_1:67790567-67790586 None:intergenic 20.0%
!!! ATTTTTCGTAAAGTAATTCT+TGG + chr1_1:67790568-67790587 None:intergenic 20.0%
!! TGTATCATAAATTATGAACT+TGG + chr1_1:67790670-67790689 None:intergenic 20.0%
!! TACTTTACAATTTAACTATG+AGG + chr1_1:67791470-67791489 None:intergenic 20.0%
!! ACAAGATAAAAAAAGACATT+GGG + chr1_1:67791513-67791532 None:intergenic 20.0%
!! AAATCATAACTTACATAAAG+GGG + chr1_1:67791563-67791582 None:intergenic 20.0%
! TTCTTATATTTGTGTTGTAG+TGG - chr1_1:67788228-67788247 Msa0038350:CDS 25.0%
! CCAAACTTCAATGATAAATA+AGG + chr1_1:67788332-67788351 None:intergenic 25.0%
!! CCTTATTTATCATTGAAGTT+TGG - chr1_1:67788329-67788348 Msa0038350:CDS 25.0%
!!! TGTCAGAAACAATTTTAAGA+TGG + chr1_1:67788629-67788648 None:intergenic 25.0%
!!! AATTGTTTCTGACAAAAGTA+TGG - chr1_1:67788635-67788654 Msa0038350:CDS 25.0%
!!! TTTAAACTGCTTTAGCTTTT+AGG - chr1_1:67788661-67788680 Msa0038350:CDS 25.0%
!!! TGATCATTAAGTATTGAAGA+TGG - chr1_1:67788777-67788796 Msa0038350:CDS 25.0%
!!! ATATGGACTCTATTTGTTTT+AGG - chr1_1:67789874-67789893 Msa0038350:intron 25.0%
!!! AATTTTTAGATCTGGTTTGT+CGG - chr1_1:67790056-67790075 Msa0038350:intron 25.0%
! ATTGTCTTGTAAAAAGTTGA+TGG - chr1_1:67790328-67790347 Msa0038350:CDS 25.0%
!! TGTGTAAAATTGGTTTACAT+TGG - chr1_1:67790503-67790522 Msa0038350:CDS 25.0%
!! TAGAATGTAATCTCCATTTT+AGG - chr1_1:67791405-67791424 Msa0038350:five_prime_UTR 25.0%
! GACAAGATAAAAAAAGACAT+TGG + chr1_1:67791514-67791533 None:intergenic 25.0%
! AATCATAACTTACATAAAGG+GGG + chr1_1:67791562-67791581 None:intergenic 25.0%
AAAAGAAAGAAACAAGAGGT+AGG + chr1_1:67787944-67787963 None:intergenic 30.0%
ATCTTACACTCTCTACTTTA+AGG - chr1_1:67788367-67788386 Msa0038350:CDS 30.0%
TCTTGTGAATGTTTCTCATA+AGG - chr1_1:67788411-67788430 Msa0038350:CDS 30.0%
CTTGTGAATGTTTCTCATAA+GGG - chr1_1:67788412-67788431 Msa0038350:CDS 30.0%
ATTTGATTCCTGTTCTCATA+AGG - chr1_1:67788450-67788469 Msa0038350:CDS 30.0%
TTTGATTCCTGTTCTCATAA+GGG - chr1_1:67788451-67788470 Msa0038350:CDS 30.0%
TCGTGATGTTATTAAGAGAT+TGG - chr1_1:67789121-67789140 Msa0038350:intron 30.0%
TGGTTAATGAGTTTCAGTTA+AGG - chr1_1:67789336-67789355 Msa0038350:CDS 30.0%
CATAAATGAAAAATTAGGCC+AGG + chr1_1:67789540-67789559 None:intergenic 30.0%
!!! TGTTGATTTTGTTTTACAGC+CGG - chr1_1:67789565-67789584 Msa0038350:intron 30.0%
AAAGAGAAAGATGAATTGCT+TGG + chr1_1:67789820-67789839 None:intergenic 30.0%
! CTTTTCATTTTCATATGGCA+TGG + chr1_1:67789930-67789949 None:intergenic 30.0%
CACAGAGTATGTTATATCAA+TGG - chr1_1:67790169-67790188 Msa0038350:intron 30.0%
!!! CATTTTGTTTTCGATCTGTT+TGG - chr1_1:67790257-67790276 Msa0038350:intron 30.0%
CACATGCACAAATATCTAAT+TGG + chr1_1:67790433-67790452 None:intergenic 30.0%
TTAGATATTTGTGCATGTGT+AGG - chr1_1:67790434-67790453 Msa0038350:CDS 30.0%
TAGATATTTGTGCATGTGTA+GGG - chr1_1:67790435-67790454 Msa0038350:CDS 30.0%
TATTAACTTTCTCCTCTTTC+AGG - chr1_1:67790628-67790647 Msa0038350:exon 30.0%
AAGAAAATTAGACCTGAAAG+AGG + chr1_1:67790643-67790662 None:intergenic 30.0%
!! TCTTTCAGGTCTAATTTTCT+TGG - chr1_1:67790642-67790661 Msa0038350:five_prime_UTR 30.0%
!!! CTTTTTTCGAGTTGAATCTA+CGG + chr1_1:67790737-67790756 None:intergenic 30.0%
TGTAGGTTCTCAGATATAAT+GGG - chr1_1:67790996-67791015 Msa0038350:intron 30.0%
ACTGAAGAATAATCTTGTCA+TGG + chr1_1:67791244-67791263 None:intergenic 30.0%
GACAAGATTATTCTTCAGTT+CGG - chr1_1:67791245-67791264 Msa0038350:five_prime_UTR 30.0%
!! TCTCCATTTTAGGAATTCAT+AGG - chr1_1:67791415-67791434 Msa0038350:five_prime_UTR 30.0%
CATCCTATGAATTCCTAAAA+TGG + chr1_1:67791421-67791440 None:intergenic 30.0%
!! CATTTTAGGAATTCATAGGA+TGG - chr1_1:67791419-67791438 Msa0038350:five_prime_UTR 30.0%
GAAGAAAAAAAATCTGGGTC+TGG + chr1_1:67788006-67788025 None:intergenic 35.0%
!! GGTTTCTGTTTTGTTGATGT+AGG - chr1_1:67788191-67788210 Msa0038350:exon 35.0%
TGTTGATGTAGGAATCTTCT+AGG - chr1_1:67788202-67788221 Msa0038350:CDS 35.0%
!! TCATTGAAGTTTGGTGTTTG+AGG - chr1_1:67788338-67788357 Msa0038350:CDS 35.0%
TAGTCAGTCTAACTTCTCAT+AGG + chr1_1:67788578-67788597 None:intergenic 35.0%
AGTTAGACTGACTATTGAGA+AGG - chr1_1:67788584-67788603 Msa0038350:CDS 35.0%
!!! TTTAGCTTTTAGGTCCATGT+GGG - chr1_1:67788671-67788690 Msa0038350:CDS 35.0%
TTTGTCACAAAAGACACTCA+AGG + chr1_1:67788886-67788905 None:intergenic 35.0%
TTCCAATACACTGACAGTTT+CGG + chr1_1:67788916-67788935 None:intergenic 35.0%
TAGTATTGTTCGTGATGTGA+GGG - chr1_1:67788950-67788969 Msa0038350:intron 35.0%
TCAACACTCTTGAATACTGT+GGG - chr1_1:67789234-67789253 Msa0038350:intron 35.0%
TTACAGTTAGGGTTCAAAGT+CGG + chr1_1:67789381-67789400 None:intergenic 35.0%
ACCCTAACTGTAACAATCAT+TGG - chr1_1:67789388-67789407 Msa0038350:CDS 35.0%
GCCAATGATTGTTACAGTTA+GGG + chr1_1:67789392-67789411 None:intergenic 35.0%
TCAGGAGATTAGTAGAAGTT+TGG + chr1_1:67789414-67789433 None:intergenic 35.0%
!!! GTTGATTTTGTTTTACAGCC+GGG - chr1_1:67789566-67789585 Msa0038350:intron 35.0%
!!! TTGATTTTGTTTTACAGCCG+GGG - chr1_1:67789567-67789586 Msa0038350:intron 35.0%
! CTTTTGATGAAACACTGGAT+GGG + chr1_1:67789605-67789624 None:intergenic 35.0%
! TCTTTTGATGAAACACTGGA+TGG + chr1_1:67789606-67789625 None:intergenic 35.0%
! TGTCTCTTTTGATGAAACAC+TGG + chr1_1:67789610-67789629 None:intergenic 35.0%
TCAACAAAGTAAAGCTTACC+AGG + chr1_1:67789671-67789690 None:intergenic 35.0%
TTATGAGTTATCGCATTTCG+TGG - chr1_1:67789766-67789785 Msa0038350:intron 35.0%
GAATTGCTTGGATTGACAAA+GGG + chr1_1:67789808-67789827 None:intergenic 35.0%
TGAATTGCTTGGATTGACAA+AGG + chr1_1:67789809-67789828 None:intergenic 35.0%
TAATTCTGCTGAACTGCATA+TGG - chr1_1:67789857-67789876 Msa0038350:intron 35.0%
GCATGGACAACAAGAAATAT+TGG + chr1_1:67789913-67789932 None:intergenic 35.0%
!!! GGTTCAATTTTTTGCTATGC+TGG - chr1_1:67789972-67789991 Msa0038350:intron 35.0%
AGATCCAGTAACACTTACAT+CGG - chr1_1:67790209-67790228 Msa0038350:intron 35.0%
GTTATGAGATACTCTGTCTA+TGG + chr1_1:67790297-67790316 None:intergenic 35.0%
GTAAAGTAATTCTTGGGTGA+TGG + chr1_1:67790561-67790580 None:intergenic 35.0%
CTCGAAAAAAGTTTCACCAA+AGG - chr1_1:67790746-67790765 Msa0038350:intron 35.0%
ATCGTGCAAAGGATAAACTA+CGG + chr1_1:67790947-67790966 None:intergenic 35.0%
CTGTAGGTTCTCAGATATAA+TGG - chr1_1:67790995-67791014 Msa0038350:intron 35.0%
! GACTTGTTCTTAAGAACTAG+AGG + chr1_1:67791059-67791078 None:intergenic 35.0%
TTAAGAACAAGTCTCCTAGA+TGG - chr1_1:67791066-67791085 Msa0038350:intron 35.0%
! AATGTTGGTGCCTTAACTTT+AGG - chr1_1:67791102-67791121 Msa0038350:intron 35.0%
! ATGTTGGTGCCTTAACTTTA+GGG - chr1_1:67791103-67791122 Msa0038350:intron 35.0%
ATTCTTCAGTTCGGTAAAGT+CGG - chr1_1:67791254-67791273 Msa0038350:five_prime_UTR 35.0%
ATAGTGACAAGAGATACATG+TGG - chr1_1:67791373-67791392 Msa0038350:intron 35.0%
! ACATTGGGAAGAGATTGTTT+TGG + chr1_1:67791498-67791517 None:intergenic 35.0%
! TGCCCTTTTTCTTTTGAACA+TGG - chr1_1:67791536-67791555 Msa0038350:five_prime_UTR 35.0%
GGCCATGTTCAAAAGAAAAA+GGG + chr1_1:67791541-67791560 None:intergenic 35.0%
AAATCTGGGTCTGGAAGTTT+CGG + chr1_1:67787997-67788016 None:intergenic 40.0%
!!! CTTTAGCTTTTAGGTCCATG+TGG - chr1_1:67788670-67788689 Msa0038350:CDS 40.0%
!! TTAGCTTTTAGGTCCATGTG+GGG - chr1_1:67788672-67788691 Msa0038350:CDS 40.0%
! GTTGTGACTTGTAACTAGAG+TGG - chr1_1:67788850-67788869 Msa0038350:CDS 40.0%
TTCCGAAACTGTCAGTGTAT+TGG - chr1_1:67788911-67788930 Msa0038350:intron 40.0%
GTAGTATTGTTCGTGATGTG+AGG - chr1_1:67788949-67788968 Msa0038350:intron 40.0%
ATGGATTTGGAAGCTTATCG+AGG - chr1_1:67788973-67788992 Msa0038350:intron 40.0%
AGTTATACAGAACAGCCCAT+GGG - chr1_1:67789076-67789095 Msa0038350:intron 40.0%
ATAACATCACGAAGAAGCTC+CGG + chr1_1:67789113-67789132 None:intergenic 40.0%
GTCAACACTCTTGAATACTG+TGG - chr1_1:67789233-67789252 Msa0038350:intron 40.0%
GGCCAATGATTGTTACAGTT+AGG + chr1_1:67789393-67789412 None:intergenic 40.0%
AACGACAGGGTTAAGACAAA+AGG - chr1_1:67789461-67789480 Msa0038350:intron 40.0%
TTCTATCCTACTTTGCGTGT+TGG - chr1_1:67789951-67789970 Msa0038350:CDS 40.0%
ATTGAACCAACACGCAAAGT+AGG + chr1_1:67789960-67789979 None:intergenic 40.0%
! TTTTCAACAAGCAATGCTGC+AGG + chr1_1:67790104-67790123 None:intergenic 40.0%
! GCAGCATTGCTTGTTGAAAA+TGG - chr1_1:67790104-67790123 Msa0038350:intron 40.0%
CTTTCCGATGTAAGTGTTAC+TGG + chr1_1:67790216-67790235 None:intergenic 40.0%
ACACTTACATCGGAAAGCTT+AGG - chr1_1:67790219-67790238 Msa0038350:intron 40.0%
TACATCGGAAAGCTTAGGTA+TGG - chr1_1:67790224-67790243 Msa0038350:intron 40.0%
ATTGGGCGTCTGTGTAAAAT+TGG - chr1_1:67790493-67790512 Msa0038350:CDS 40.0%
! TTCTTGGGTGATGGCAAAAA+AGG + chr1_1:67790552-67790571 None:intergenic 40.0%
ATTCAACTCATAGGTGACCT+GGG + chr1_1:67790796-67790815 None:intergenic 40.0%
! ACCTATGAGTTGAATGTCCT+TGG - chr1_1:67790801-67790820 Msa0038350:intron 40.0%
ACCAAGGACATTCAACTCAT+AGG + chr1_1:67790805-67790824 None:intergenic 40.0%
TTGAATGTCCTTGGTACTAG+AGG - chr1_1:67790810-67790829 Msa0038350:intron 40.0%
TAGTGCAATTCATCCTTCGT+GGG + chr1_1:67790836-67790855 None:intergenic 40.0%
ATAGTGCAATTCATCCTTCG+TGG + chr1_1:67790837-67790856 None:intergenic 40.0%
AAAGAATCCTCAAGATTGCG+GGG + chr1_1:67790924-67790943 None:intergenic 40.0%
GAAAGAATCCTCAAGATTGC+GGG + chr1_1:67790925-67790944 None:intergenic 40.0%
GGAAAGAATCCTCAAGATTG+CGG + chr1_1:67790926-67790945 None:intergenic 40.0%
! TTCTCAGATATAATGGGAGC+TGG - chr1_1:67791002-67791021 Msa0038350:intron 40.0%
! TGTTGGTGCCTTAACTTTAG+GGG - chr1_1:67791104-67791123 Msa0038350:intron 40.0%
ACATATCGCAAAAGCCTGAA+AGG + chr1_1:67791321-67791340 None:intergenic 40.0%
GGGCCATGTTCAAAAGAAAA+AGG + chr1_1:67791542-67791561 None:intergenic 40.0%
! GTTTCTCATAAGGGTGTGTG+AGG - chr1_1:67788421-67788440 Msa0038350:CDS 45.0%
TCCTGTTCTCATAAGGGAAG+AGG - chr1_1:67788457-67788476 Msa0038350:CDS 45.0%
TCCTCTTCCCTTATGAGAAC+AGG + chr1_1:67788461-67788480 None:intergenic 45.0%
TCATCAAACAAAGCCCCACA+TGG + chr1_1:67788688-67788707 None:intergenic 45.0%
ATTGTTCGTGATGTGAGGGA+TGG - chr1_1:67788954-67788973 Msa0038350:intron 45.0%
GATTTGGAAGCTTATCGAGG+CGG - chr1_1:67788976-67788995 Msa0038350:intron 45.0%
!!! AGTTTTGAGGTAAGGCTTCC+TGG - chr1_1:67788999-67789018 Msa0038350:intron 45.0%
TAAGGCTTCCTGGACATCAA+AGG - chr1_1:67789009-67789028 Msa0038350:intron 45.0%
AAGGCTTCCTGGACATCAAA+GGG - chr1_1:67789010-67789029 Msa0038350:intron 45.0%
! GAGGTTGATCATGCAACTCA+TGG + chr1_1:67789055-67789074 None:intergenic 45.0%
! CATGGGCTGTTCTGTATAAC+TGG + chr1_1:67789077-67789096 None:intergenic 45.0%
CAGTTATACAGAACAGCCCA+TGG - chr1_1:67789075-67789094 Msa0038350:intron 45.0%
!! TGGAAGCAACTGAGAGTACT+TGG - chr1_1:67789141-67789160 Msa0038350:intron 45.0%
!! TTTCCCTGTTTCTCTGAAGC+AGG - chr1_1:67789265-67789284 Msa0038350:intron 45.0%
TCACCTGCTTCAGAGAAACA+GGG + chr1_1:67789271-67789290 None:intergenic 45.0%
TAATCTCCTGACCGATTACC+AGG - chr1_1:67789423-67789442 Msa0038350:CDS 45.0%
AATCTCCTGACCGATTACCA+GGG - chr1_1:67789424-67789443 Msa0038350:CDS 45.0%
!! TTGTTTTACAGCCGGGGTAT+AGG - chr1_1:67789573-67789592 Msa0038350:intron 45.0%
! TGTTTTACAGCCGGGGTATA+GGG - chr1_1:67789574-67789593 Msa0038350:intron 45.0%
AGTAAAGCTTACCAGGACTG+AGG + chr1_1:67789664-67789683 None:intergenic 45.0%
! AGCTGAGCATTGTTATAGGG+AGG + chr1_1:67790696-67790715 None:intergenic 45.0%
TCCCTATAACAATGCTCAGC+TGG - chr1_1:67790695-67790714 Msa0038350:five_prime_UTR 45.0%
! GCCAGCTGAGCATTGTTATA+GGG + chr1_1:67790699-67790718 None:intergenic 45.0%
! AGCCAGCTGAGCATTGTTAT+AGG + chr1_1:67790700-67790719 None:intergenic 45.0%
CGATGTTGTAACTGCCACTA+GGG + chr1_1:67790773-67790792 None:intergenic 45.0%
CATTCAACTCATAGGTGACC+TGG + chr1_1:67790797-67790816 None:intergenic 45.0%
GTTATCGATCGATCGTGCAA+AGG + chr1_1:67790958-67790977 None:intergenic 45.0%
CAACTGAGTTTAGCAGCTGT+AGG - chr1_1:67790979-67790998 Msa0038350:intron 45.0%
TGCAGTTGTTCATGCCATCT+AGG + chr1_1:67791083-67791102 None:intergenic 45.0%
GGCATGAACAACTGCAATGT+TGG - chr1_1:67791087-67791106 Msa0038350:intron 45.0%
TCACACGTCCCCTAAAGTTA+AGG + chr1_1:67791115-67791134 None:intergenic 45.0%
CGGCAAGGATATGTTTACGA+TGG - chr1_1:67791274-67791293 Msa0038350:intron 45.0%
! CGTGATGTGAGGGATGGATT+TGG - chr1_1:67788960-67788979 Msa0038350:intron 50.0%
! CTTATCGAGGCGGAGTTTTG+AGG - chr1_1:67788986-67789005 Msa0038350:intron 50.0%
AGGCTTCCTGGACATCAAAG+GGG - chr1_1:67789011-67789030 Msa0038350:intron 50.0%
GGGCTGTTCTGTATAACTGG+AGG + chr1_1:67789074-67789093 None:intergenic 50.0%
CTCACCTGCTTCAGAGAAAC+AGG + chr1_1:67789272-67789291 None:intergenic 50.0%
ATCTCCTGACCGATTACCAG+GGG - chr1_1:67789425-67789444 Msa0038350:CDS 50.0%
TCTTAACCCTGTCGTTCCCA+GGG + chr1_1:67789457-67789476 None:intergenic 50.0%
CTCTGTGCAAGTCGTTCTTC+TGG + chr1_1:67790156-67790175 None:intergenic 50.0%
GTTTCACCAAAGGTCCCTAG+TGG - chr1_1:67790756-67790775 Msa0038350:intron 50.0%
TAACTGCCACTAGGGACCTT+TGG + chr1_1:67790765-67790784 None:intergenic 50.0%
GCGATGTTGTAACTGCCACT+AGG + chr1_1:67790774-67790793 None:intergenic 50.0%
TTGTCATGGTCTGACTGTGC+TGG + chr1_1:67791230-67791249 None:intergenic 50.0%
TCAGTTCGGTAAAGTCGGCA+AGG - chr1_1:67791259-67791278 Msa0038350:five_prime_UTR 50.0%
GGACTATCGATACCCTCTCT+CGG - chr1_1:67791295-67791314 Msa0038350:intron 50.0%
!!! CGAGGCGGAGTTTTGAGGTA+AGG - chr1_1:67788991-67789010 Msa0038350:intron 55.0%
GACTTGCCCCTTTGATGTCC+AGG + chr1_1:67789020-67789039 None:intergenic 55.0%
AAGGGGCAAGTCGCGTAGTT+CGG - chr1_1:67789028-67789047 Msa0038350:intron 55.0%
ACATCACGAAGAAGCTCCGG+TGG + chr1_1:67789110-67789129 None:intergenic 55.0%
!! GCAACTGAGAGTACTTGGCC+TGG - chr1_1:67789146-67789165 Msa0038350:intron 55.0%
TTGGCCTGGTCGTAAGCATG+TGG - chr1_1:67789160-67789179 Msa0038350:intron 55.0%
GCAACCACATGCTTACGACC+AGG + chr1_1:67789167-67789186 None:intergenic 55.0%
GCATGTGGTTGCTTGTGCTG+CGG - chr1_1:67789175-67789194 Msa0038350:intron 55.0%
CTTAACCCTGTCGTTCCCAG+GGG + chr1_1:67789456-67789475 None:intergenic 55.0%
GTCTTAACCCTGTCGTTCCC+AGG + chr1_1:67789458-67789477 None:intergenic 55.0%
TTACAGCCGGGGTATAGGGA+TGG - chr1_1:67789578-67789597 Msa0038350:intron 55.0%
ATGGGTCCATCCCTATACCC+CGG + chr1_1:67789587-67789606 None:intergenic 55.0%
GACTGAGGCAAAGGAAGAGG+TGG + chr1_1:67789649-67789668 None:intergenic 55.0%
CAGGACTGAGGCAAAGGAAG+AGG + chr1_1:67789652-67789671 None:intergenic 55.0%
CTCTTCCTTTGCCTCAGTCC+TGG - chr1_1:67789650-67789669 Msa0038350:intron 55.0%
GCTTACCAGGACTGAGGCAA+AGG + chr1_1:67789658-67789677 None:intergenic 55.0%
TTGAATCTACGGCTGCGTCC+AGG + chr1_1:67790726-67790745 None:intergenic 55.0%
TGGCAGTTACAACATCGCCC+AGG - chr1_1:67790776-67790795 Msa0038350:intron 55.0%
TTCGTGGGCCTCTAGTACCA+AGG + chr1_1:67790821-67790840 None:intergenic 55.0%
TTGGTACTAGAGGCCCACGA+AGG - chr1_1:67790820-67790839 Msa0038350:intron 55.0%
AGATTGCGGGGAATGAGCTC+TGG + chr1_1:67790912-67790931 None:intergenic 55.0%
GCTCATTCCCCGCAATCTTG+AGG - chr1_1:67790914-67790933 Msa0038350:intron 55.0%
AGCTGGCAATGAAGACGAGG+AGG - chr1_1:67791019-67791038 Msa0038350:intron 55.0%
TGGCAATGAAGACGAGGAGG+AGG - chr1_1:67791022-67791041 Msa0038350:intron 55.0%
GGCAATGAAGACGAGGAGGA+GGG - chr1_1:67791023-67791042 Msa0038350:intron 55.0%
GCAATGAAGACGAGGAGGAG+GGG - chr1_1:67791024-67791043 Msa0038350:intron 55.0%
ATACCCTCTCTCGGCCTTTC+AGG - chr1_1:67791304-67791323 Msa0038350:intron 55.0%
AAGCCTGAAAGGCCGAGAGA+GGG + chr1_1:67791310-67791329 None:intergenic 55.0%
AAAGCCTGAAAGGCCGAGAG+AGG + chr1_1:67791311-67791330 None:intergenic 55.0%
CACGAAGAAGCTCCGGTGGA+AGG + chr1_1:67789106-67789125 None:intergenic 60.0%
AAGGCCCCTGGTAATCGGTC+AGG + chr1_1:67789432-67789451 None:intergenic 60.0%
GGGGAAAGGCCCCTGGTAAT+CGG + chr1_1:67789437-67789456 None:intergenic 60.0%
ATTACCAGGGGCCTTTCCCC+TGG - chr1_1:67789437-67789456 Msa0038350:CDS 60.0%
TTACCAGGGGCCTTTCCCCT+GGG - chr1_1:67789438-67789457 Msa0038350:CDS 60.0%
CCTTTCCCCTGGGAACGACA+GGG - chr1_1:67789448-67789467 Msa0038350:intron 60.0%
! AATGCTCAGCTGGCTCCTCC+TGG - chr1_1:67790705-67790724 Msa0038350:five_prime_UTR 60.0%
AATCTACGGCTGCGTCCAGG+AGG + chr1_1:67790723-67790742 None:intergenic 60.0%
ACCAGGCTCGAGGGATGAAG+CGG + chr1_1:67790871-67790890 None:intergenic 60.0%
GACAACACCACCAGGCTCGA+GGG + chr1_1:67790880-67790899 None:intergenic 60.0%
!! GAATGAGCTCTGGCTGGCCT+GGG + chr1_1:67790902-67790921 None:intergenic 60.0%
GGGAGCTGGCAATGAAGACG+AGG - chr1_1:67791016-67791035 Msa0038350:intron 60.0%
TGAAGACGAGGAGGAGGGGA+AGG - chr1_1:67791028-67791047 Msa0038350:intron 60.0%
!! TCTGACTGTGCTGGCTGCGA+CGG + chr1_1:67791221-67791240 None:intergenic 60.0%
! CCGGTGGAAGGCTAGCCCAT+GGG + chr1_1:67789094-67789113 None:intergenic 65.0%
!! CCCATGGGCTAGCCTTCCAC+CGG - chr1_1:67789091-67789110 Msa0038350:intron 65.0%
! TCCGGTGGAAGGCTAGCCCA+TGG + chr1_1:67789095-67789114 None:intergenic 65.0%
GTGCTGCGGTCTGCAAGTCG+TGG - chr1_1:67789189-67789208 Msa0038350:intron 65.0%
GCCTTTCCCCTGGGAACGAC+AGG - chr1_1:67789447-67789466 Msa0038350:intron 65.0%
CCCTGTCGTTCCCAGGGGAA+AGG + chr1_1:67789451-67789470 None:intergenic 65.0%
CAGGCTCGAGGGATGAAGCG+GGG + chr1_1:67790869-67790888 None:intergenic 65.0%
CCAGGCTCGAGGGATGAAGC+GGG + chr1_1:67790870-67790889 None:intergenic 65.0%
GCTTCATCCCTCGAGCCTGG+TGG - chr1_1:67790870-67790889 Msa0038350:intron 65.0%
GGACAACACCACCAGGCTCG+AGG + chr1_1:67790881-67790900 None:intergenic 65.0%
!! GAGCCTGGTGGTGTTGTCCC+AGG - chr1_1:67790882-67790901 Msa0038350:intron 65.0%
TGGCCTGGGACAACACCACC+AGG + chr1_1:67790888-67790907 None:intergenic 65.0%
! GGAATGAGCTCTGGCTGGCC+TGG + chr1_1:67790903-67790922 None:intergenic 65.0%
! TGCGGGGAATGAGCTCTGGC+TGG + chr1_1:67790908-67790927 None:intergenic 65.0%
GCATGAGGAGCGACAGGTGC+AGG + chr1_1:67791182-67791201 None:intergenic 65.0%
GTTGCGGCATGAGGAGCGAC+AGG + chr1_1:67791188-67791207 None:intergenic 65.0%
GTCGCTCCTCATGCCGCAAC+AGG - chr1_1:67791188-67791207 Msa0038350:intron 65.0%
GCAGGTCCTGTTGCGGCATG+AGG + chr1_1:67791197-67791216 None:intergenic 65.0%
CGACGGAGCAGGTCCTGTTG+CGG + chr1_1:67791204-67791223 None:intergenic 65.0%
GTTCCCAGGGGAAAGGCCCC+TGG + chr1_1:67789444-67789463 None:intergenic 70.0%
CCCGCTTCATCCCTCGAGCC+TGG - chr1_1:67790867-67790886 Msa0038350:intron 70.0%
!! TGTGCTGGCTGCGACGGAGC+AGG + chr1_1:67791215-67791234 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 67787891 67791678 67787891 ID=Msa0038350;Name=Msa0038350
chr1_1 mRNA 67787891 67791678 67787891 ID=Msa0038350-mRNA-1;Parent=Msa0038350;Name=Msa0038350-mRNA-1;_AED=0.08;_eAED=0.08;_QI=452|1|1|1|0.6|0.5|6|302|431
chr1_1 exon 67787891 67788919 67787891 ID=Msa0038350-mRNA-1:exon:22046;Parent=Msa0038350-mRNA-1
chr1_1 exon 67789329 67789461 67789329 ID=Msa0038350-mRNA-1:exon:22045;Parent=Msa0038350-mRNA-1
chr1_1 exon 67789898 67789985 67789898 ID=Msa0038350-mRNA-1:exon:22044;Parent=Msa0038350-mRNA-1
chr1_1 exon 67790283 67790735 67790283 ID=Msa0038350-mRNA-1:exon:22043;Parent=Msa0038350-mRNA-1
chr1_1 exon 67791210 67791281 67791210 ID=Msa0038350-mRNA-1:exon:22042;Parent=Msa0038350-mRNA-1
chr1_1 exon 67791404 67791678 67791404 ID=Msa0038350-mRNA-1:exon:22041;Parent=Msa0038350-mRNA-1
chr1_1 five_prime_UTR 67791404 67791678 67791404 ID=Msa0038350-mRNA-1:five_prime_utr;Parent=Msa0038350-mRNA-1
chr1_1 five_prime_UTR 67791210 67791281 67791210 ID=Msa0038350-mRNA-1:five_prime_utr;Parent=Msa0038350-mRNA-1
chr1_1 five_prime_UTR 67790631 67790735 67790631 ID=Msa0038350-mRNA-1:five_prime_utr;Parent=Msa0038350-mRNA-1
chr1_1 CDS 67790283 67790630 67790283 ID=Msa0038350-mRNA-1:cds;Parent=Msa0038350-mRNA-1
chr1_1 CDS 67789898 67789985 67789898 ID=Msa0038350-mRNA-1:cds;Parent=Msa0038350-mRNA-1
chr1_1 CDS 67789329 67789461 67789329 ID=Msa0038350-mRNA-1:cds;Parent=Msa0038350-mRNA-1
chr1_1 CDS 67788193 67788919 67788193 ID=Msa0038350-mRNA-1:cds;Parent=Msa0038350-mRNA-1
chr1_1 three_prime_UTR 67787891 67788192 67787891 ID=Msa0038350-mRNA-1:three_prime_utr;Parent=Msa0038350-mRNA-1
Gene Sequence

>Msa0038350

ATGTCATTTCGTAGTATTGTTCGTGATGTGAGGGATGGATTTGGAAGCTTATCGAGGCGGAGTTTTGAGGTAAGGCTTCCTGGACATCAAAGGGGCAAGTCGCGTAGTTCGGTCCATGAGTTGCATGATCAACCTCCAGTTATACAGAACAGCCCATGGGCTAGCCTTCCACCGGAGCTTCTTCGTGATGTTATTAAGAGATTGGAAGCAACTGAGAGTACTTGGCCTGGTCGTAAGCATGTGGTTGCTTGTGCTGCGGTCTGCAAGTCGTGGAGAGAAATGTGCAAAGAAATTGTCAACACTCTTGAATACTGTGGGAAGATTACTTTCCCTGTTTCTCTGAAGCAGCCGGGGTATAGGGATGGACCCATCCAGTGTTTCATCAAAAGAGACAAATCTAAGCTGACATACCACCTCTTCCTTTGCCTCAGTCCTGCATTGCTTGTTGAAAATGGAAAGTTTCTTCTCTCTGCAAAACGTACCAGAAGAACGACTTGCACAGAGTATGTTATATCAATGGATGCAGATAACATATCAAGATCCAGTAACACTTACATCGGAAAGCTTAGGTCTAATTTTCTTGGAACCAAGTTCATAATTTATGATACACAGCCTCCCTATAACAATGCTCAGCTGGCTCCTCCTGGACGCAGCCGTAGATTCAACTCGAAAAAAGTTTCACCAAAGGTCCCTAGTGGCAGTTACAACATCGCCCAGGTCACCTATGAGTTGAATGTCCTTGGTACTAGAGGCCCACGAAGGATGAATTGCACTATGCACTCAATCCCCGCTTCATCCCTCGAGCCTGGTGGTGTTGTCCCAGGCCAGCCAGAGCTCATTCCCCGCAATCTTGAGGATTCTTTCCGTAGTTTATCCTTTGCACGATCGATCGATAACTCAACTGAGTTTAGCAGCTGTAGGTTCTCAGATATAATGGGAGCTGGCAATGAAGACGAGGAGGAGGGGAAGGAGAGACCTCTAGTTCTTAAGAACAAGTCTCCTAGATGGCATGAACAACTGCAATGTTGGTGCCTTAACTTTAGGGGACGTGTGACTGTTGCGTCTGTTAAGAACTTTCAGCTGATCGCTGCAGCACAGCCTGCACCTGTCGCTCCTCATGCCGCAACAGGACCTGCTCCGTCGCAGCCAGCACAGTCAGACCATGACAAGATTATTCTTCAGTTCGGTAAAGTCGGCAAGGATATGTTTACGATGGACTATCGATACCCTCTCTCGGCCTTTCAGGCTTTTGCGATATGTTTGACTAGCTTTGACACAAAACTTGCATGTGAATAG

Protein sequence

>Msa0038350

MSFRSIVRDVRDGFGSLSRRSFEVRLPGHQRGKSRSSVHELHDQPPVIQNSPWASLPPELLRDVIKRLEATESTWPGRKHVVACAAVCKSWREMCKEIVNTLEYCGKITFPVSLKQPGYRDGPIQCFIKRDKSKLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPYNNAQLAPPGRSRRFNSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRRMNCTMHSIPASSLEPGGVVPGQPELIPRNLEDSFRSLSFARSIDNSTEFSSCRFSDIMGAGNEDEEEGKERPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAAQPAPVAPHAATGPAPSQPAQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE*