Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0691420 | XP_024638423.1 | 98.402 | 438 | 6 | 1 | 1 | 437 | 63 | 500 | 0.0 | 899 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0691420 | sp|Q9ZWA6|IDD3_ARATH | 50.837 | 478 | 158 | 13 | 1 | 437 | 65 | 506 | 1.20e-133 | 397 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0691420 | A0A396IAJ3 | 98.402 | 438 | 6 | 1 | 1 | 437 | 63 | 500 | 0.0 | 899 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0691420 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0608410 | Msa0691420 | 0.937131 | 5.702046e-98 | -8.615850e-47 |
| Msa0648920 | Msa0691420 | 0.924992 | 3.351659e-90 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0691420 | MtrunA17_Chr4g0040571 | 98.402 | 438 | 6 | 1 | 1 | 437 | 63 | 500 | 0.0 | 899 |
| Msa0691420 | MtrunA17_Chr1g0181381 | 50.275 | 364 | 115 | 9 | 1 | 345 | 62 | 378 | 3.27e-100 | 308 |
| Msa0691420 | MtrunA17_Chr8g0373541 | 81.250 | 160 | 25 | 1 | 1 | 155 | 57 | 216 | 3.49e-95 | 295 |
| Msa0691420 | MtrunA17_Chr7g0268961 | 48.889 | 360 | 103 | 10 | 1 | 350 | 46 | 334 | 4.64e-95 | 294 |
| Msa0691420 | MtrunA17_Chr1g0191991 | 50.437 | 343 | 94 | 10 | 1 | 343 | 87 | 353 | 8.28e-94 | 292 |
| Msa0691420 | MtrunA17_Chr7g0263941 | 65.714 | 210 | 60 | 3 | 1 | 210 | 58 | 255 | 1.09e-93 | 288 |
| Msa0691420 | MtrunA17_Chr2g0330171 | 87.857 | 140 | 17 | 0 | 1 | 140 | 70 | 209 | 1.24e-93 | 290 |
| Msa0691420 | MtrunA17_Chr4g0029521 | 41.379 | 464 | 164 | 16 | 1 | 423 | 62 | 458 | 1.81e-93 | 290 |
| Msa0691420 | MtrunA17_Chr8g0342421 | 88.571 | 140 | 16 | 0 | 1 | 140 | 86 | 225 | 3.83e-93 | 290 |
| Msa0691420 | MtrunA17_Chr1g0162971 | 79.747 | 158 | 27 | 1 | 1 | 153 | 65 | 222 | 6.81e-93 | 287 |
| Msa0691420 | MtrunA17_Chr1g0163001 | 88.489 | 139 | 16 | 0 | 1 | 139 | 67 | 205 | 2.68e-91 | 286 |
| Msa0691420 | MtrunA17_Chr1g0199101 | 86.957 | 138 | 18 | 0 | 1 | 138 | 71 | 208 | 9.59e-91 | 285 |
| Msa0691420 | MtrunA17_Chr1g0210821 | 45.855 | 386 | 163 | 9 | 1 | 360 | 68 | 433 | 7.29e-90 | 283 |
| Msa0691420 | MtrunA17_Chr1g0185121 | 85.315 | 143 | 20 | 1 | 1 | 142 | 64 | 206 | 2.36e-89 | 278 |
| Msa0691420 | MtrunA17_Chr1g0151351 | 80.667 | 150 | 28 | 1 | 1 | 149 | 65 | 214 | 3.43e-88 | 275 |
| Msa0691420 | MtrunA17_Chr2g0326381 | 68.208 | 173 | 45 | 2 | 1 | 172 | 56 | 219 | 1.64e-85 | 267 |
| Msa0691420 | MtrunA17_Chr2g0324991 | 92.373 | 118 | 9 | 0 | 1 | 118 | 16 | 133 | 6.58e-79 | 241 |
| Msa0691420 | MtrunA17_Chr3g0141431 | 76.119 | 134 | 31 | 1 | 1 | 133 | 46 | 179 | 1.24e-78 | 249 |
| Msa0691420 | MtrunA17_Chr6g0479921 | 62.879 | 132 | 48 | 1 | 1 | 131 | 53 | 184 | 8.91e-58 | 197 |
| Msa0691420 | MtrunA17_Chr8g0375521 | 43.089 | 246 | 119 | 7 | 1 | 227 | 51 | 294 | 7.90e-57 | 193 |
| Msa0691420 | MtrunA17_Chr2g0324981 | 50.542 | 277 | 79 | 17 | 155 | 423 | 5 | 231 | 4.44e-46 | 159 |
| Msa0691420 | MtrunA17_Chr1g0200421 | 34.177 | 158 | 88 | 4 | 1 | 142 | 246 | 403 | 5.02e-21 | 95.5 |
| Msa0691420 | MtrunA17_Chr2g0320341 | 37.594 | 133 | 69 | 4 | 8 | 126 | 246 | 378 | 1.59e-20 | 93.2 |
| Msa0691420 | MtrunA17_Chr3g0123941 | 36.496 | 137 | 79 | 3 | 1 | 129 | 132 | 268 | 5.89e-20 | 90.5 |
| Msa0691420 | MtrunA17_Chr5g0422571 | 33.974 | 156 | 92 | 4 | 1 | 146 | 109 | 263 | 1.11e-19 | 89.0 |
| Msa0691420 | MtrunA17_Chr8g0382121 | 36.496 | 137 | 76 | 5 | 1 | 126 | 120 | 256 | 1.41e-18 | 86.3 |
| Msa0691420 | MtrunA17_Chr7g0258011 | 31.098 | 164 | 95 | 5 | 1 | 147 | 184 | 346 | 1.76e-17 | 83.6 |
| Msa0691420 | MtrunA17_Chr4g0053341 | 36.090 | 133 | 75 | 4 | 6 | 129 | 87 | 218 | 3.87e-17 | 80.5 |
| Msa0691420 | MtrunA17_Chr1g0198651 | 34.228 | 149 | 85 | 5 | 1 | 137 | 110 | 257 | 4.76e-17 | 81.3 |
| Msa0691420 | MtrunA17_Chr8g0352011 | 33.742 | 163 | 87 | 6 | 1 | 146 | 174 | 332 | 6.02e-17 | 81.6 |
| Msa0691420 | MtrunA17_Chr1g0173841 | 30.539 | 167 | 98 | 5 | 1 | 150 | 223 | 388 | 2.35e-16 | 80.5 |
| Msa0691420 | MtrunA17_Chr2g0321291 | 35.075 | 134 | 77 | 4 | 5 | 129 | 145 | 277 | 1.42e-15 | 77.4 |
| Msa0691420 | MtrunA17_Chr2g0328921 | 32.609 | 138 | 83 | 4 | 1 | 129 | 146 | 282 | 2.03e-15 | 77.0 |
| Msa0691420 | MtrunA17_Chr4g0026521 | 33.582 | 134 | 79 | 4 | 5 | 129 | 130 | 262 | 3.05e-15 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0691420 | AT1G03840.2 | 50.837 | 478 | 158 | 13 | 1 | 437 | 63 | 504 | 7.97e-135 | 397 |
| Msa0691420 | AT1G03840.1 | 50.837 | 478 | 158 | 13 | 1 | 437 | 65 | 506 | 1.22e-134 | 397 |
| Msa0691420 | AT5G44160.1 | 49.893 | 469 | 140 | 15 | 1 | 437 | 61 | 466 | 5.26e-130 | 384 |
| Msa0691420 | AT5G44160.2 | 49.893 | 469 | 140 | 15 | 1 | 437 | 22 | 427 | 6.57e-130 | 382 |
| Msa0691420 | AT2G02080.6 | 43.736 | 439 | 191 | 10 | 1 | 423 | 1 | 399 | 3.00e-95 | 293 |
| Msa0691420 | AT2G02080.2 | 43.736 | 439 | 191 | 10 | 1 | 423 | 1 | 399 | 3.00e-95 | 293 |
| Msa0691420 | AT2G02080.1 | 43.736 | 439 | 191 | 10 | 1 | 423 | 78 | 476 | 1.26e-94 | 294 |
| Msa0691420 | AT2G02080.4 | 43.736 | 439 | 191 | 10 | 1 | 423 | 78 | 476 | 1.26e-94 | 294 |
| Msa0691420 | AT2G02080.5 | 43.736 | 439 | 191 | 10 | 1 | 423 | 78 | 476 | 1.26e-94 | 294 |
| Msa0691420 | AT2G02080.3 | 43.736 | 439 | 191 | 10 | 1 | 423 | 78 | 476 | 1.26e-94 | 294 |
| Msa0691420 | AT3G50700.1 | 88.489 | 139 | 16 | 0 | 1 | 139 | 58 | 196 | 2.22e-94 | 291 |
| Msa0691420 | AT5G66730.1 | 87.770 | 139 | 17 | 0 | 1 | 139 | 56 | 194 | 4.62e-93 | 290 |
| Msa0691420 | AT5G03150.1 | 66.667 | 216 | 53 | 5 | 1 | 205 | 77 | 284 | 2.89e-92 | 288 |
| Msa0691420 | AT3G13810.6 | 89.286 | 140 | 14 | 1 | 1 | 139 | 75 | 214 | 2.81e-90 | 282 |
| Msa0691420 | AT3G13810.4 | 89.286 | 140 | 14 | 1 | 1 | 139 | 94 | 233 | 3.18e-90 | 283 |
| Msa0691420 | AT3G13810.1 | 89.286 | 140 | 14 | 1 | 1 | 139 | 94 | 233 | 3.18e-90 | 283 |
| Msa0691420 | AT1G14580.1 | 84.892 | 139 | 21 | 0 | 1 | 139 | 77 | 215 | 3.55e-90 | 281 |
| Msa0691420 | AT1G14580.2 | 84.892 | 139 | 21 | 0 | 1 | 139 | 77 | 215 | 3.55e-90 | 281 |
| Msa0691420 | AT3G13810.5 | 89.286 | 140 | 14 | 1 | 1 | 139 | 89 | 228 | 3.79e-90 | 283 |
| Msa0691420 | AT3G13810.3 | 89.286 | 140 | 14 | 1 | 1 | 139 | 81 | 220 | 4.03e-90 | 282 |
| Msa0691420 | AT3G13810.2 | 89.286 | 140 | 14 | 1 | 1 | 139 | 95 | 234 | 5.53e-90 | 282 |
| Msa0691420 | AT3G45260.2 | 76.687 | 163 | 33 | 2 | 1 | 158 | 63 | 225 | 5.96e-90 | 280 |
| Msa0691420 | AT3G45260.1 | 76.687 | 163 | 33 | 2 | 1 | 158 | 63 | 225 | 5.96e-90 | 280 |
| Msa0691420 | AT1G14580.3 | 84.892 | 139 | 21 | 0 | 1 | 139 | 91 | 229 | 6.81e-90 | 281 |
| Msa0691420 | AT2G02070.2 | 85.612 | 139 | 20 | 0 | 1 | 139 | 76 | 214 | 8.65e-90 | 284 |
| Msa0691420 | AT2G02070.1 | 85.612 | 139 | 20 | 0 | 1 | 139 | 76 | 214 | 8.65e-90 | 284 |
| Msa0691420 | AT1G55110.3 | 86.525 | 141 | 18 | 1 | 1 | 140 | 87 | 227 | 2.14e-89 | 279 |
| Msa0691420 | AT1G55110.1 | 86.525 | 141 | 18 | 1 | 1 | 140 | 87 | 227 | 2.14e-89 | 279 |
| Msa0691420 | AT1G55110.2 | 86.525 | 141 | 18 | 1 | 1 | 140 | 87 | 227 | 2.14e-89 | 279 |
| Msa0691420 | AT4G02670.2 | 80.405 | 148 | 28 | 1 | 1 | 147 | 79 | 226 | 1.21e-86 | 270 |
| Msa0691420 | AT4G02670.1 | 80.405 | 148 | 28 | 1 | 1 | 147 | 77 | 224 | 1.30e-86 | 270 |
| Msa0691420 | AT2G01940.1 | 64.925 | 134 | 45 | 2 | 1 | 132 | 68 | 201 | 4.04e-58 | 197 |
| Msa0691420 | AT1G25250.1 | 63.910 | 133 | 45 | 2 | 1 | 130 | 34 | 166 | 1.37e-57 | 194 |
| Msa0691420 | AT1G68130.1 | 64.394 | 132 | 45 | 2 | 1 | 130 | 65 | 196 | 1.50e-57 | 195 |
| Msa0691420 | AT1G25250.3 | 63.910 | 133 | 45 | 2 | 1 | 130 | 57 | 189 | 1.68e-57 | 194 |
| Msa0691420 | AT2G01940.3 | 63.704 | 135 | 46 | 3 | 1 | 132 | 68 | 202 | 2.79e-54 | 187 |
| Msa0691420 | AT2G01940.2 | 66.071 | 112 | 36 | 2 | 23 | 132 | 1 | 112 | 1.44e-45 | 162 |
| Msa0691420 | AT1G68130.2 | 65.455 | 110 | 36 | 2 | 23 | 130 | 1 | 110 | 2.08e-45 | 160 |
| Msa0691420 | AT1G25250.2 | 64.865 | 111 | 36 | 2 | 23 | 130 | 1 | 111 | 5.74e-45 | 159 |
| Msa0691420 | AT5G22890.1 | 33.566 | 143 | 81 | 3 | 1 | 129 | 212 | 354 | 8.43e-21 | 94.0 |
| Msa0691420 | AT1G34370.3 | 31.383 | 188 | 102 | 5 | 1 | 161 | 29 | 216 | 8.82e-21 | 92.4 |
| Msa0691420 | AT1G34370.2 | 31.383 | 188 | 102 | 5 | 1 | 161 | 239 | 426 | 1.43e-20 | 94.4 |
| Msa0691420 | AT1G34370.1 | 31.383 | 188 | 102 | 5 | 1 | 161 | 239 | 426 | 1.43e-20 | 94.4 |
| Msa0691420 | AT1G13290.1 | 34.228 | 149 | 86 | 5 | 1 | 138 | 96 | 243 | 2.58e-17 | 82.8 |
| Msa0691420 | AT1G34790.1 | 35.256 | 156 | 84 | 5 | 6 | 145 | 145 | 299 | 5.77e-17 | 81.6 |
| Msa0691420 | AT3G20880.1 | 33.333 | 138 | 82 | 4 | 1 | 129 | 251 | 387 | 1.43e-16 | 81.6 |
| Msa0691420 | AT3G57670.1 | 29.697 | 165 | 98 | 5 | 1 | 148 | 212 | 375 | 3.22e-16 | 80.5 |
| Msa0691420 | AT1G08290.1 | 35.556 | 135 | 76 | 4 | 5 | 129 | 179 | 312 | 5.70e-16 | 79.3 |
| Msa0691420 | AT1G51220.1 | 31.884 | 138 | 84 | 4 | 1 | 129 | 173 | 309 | 1.25e-15 | 78.2 |
Find 85 sgRNAs with CRISPR-Local
Find 280 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAATAACTATCAGCTAAAT+TGG | 0.096349 | 4_4:-59514210 | Msa0691420:CDS |
| GTTTGAAAATTGAAGGAAAA+TGG | 0.203408 | 4_4:+59514449 | None:intergenic |
| TAAACAACAGCTCATTATTA+AGG | 0.225341 | 4_4:-59514540 | Msa0691420:CDS |
| ACTTCATTCCTTGGAAGTTT+AGG | 0.253137 | 4_4:-59513947 | Msa0691420:CDS |
| TGGGTGGGCATATTGTTATT+AGG | 0.257747 | 4_4:+59514469 | None:intergenic |
| AGGGCACTTGGTGACTTAAC+TGG | 0.259047 | 4_4:-59515568 | Msa0691420:CDS |
| AGCTGATAGTTATTAGAATA+TGG | 0.265620 | 4_4:+59514217 | None:intergenic |
| TGGTAATTACACCAACATAA+TGG | 0.296549 | 4_4:-59514509 | Msa0691420:CDS |
| AAGATGTTTGATGTGGTATT+TGG | 0.298081 | 4_4:+59514035 | None:intergenic |
| TAGTACTAGTAATTAATTCT+TGG | 0.306930 | 4_4:+59514155 | None:intergenic |
| GGGTGGGCATATTGTTATTA+GGG | 0.332863 | 4_4:+59514470 | None:intergenic |
| AAACATTAATGTTAATGTTA+AGG | 0.353425 | 4_4:-59514113 | Msa0691420:CDS |
| TGATGATCAGGAGTTGAAAT+TGG | 0.355744 | 4_4:+59514427 | None:intergenic |
| TGCACATGTCTACGTTTAGA+AGG | 0.356777 | 4_4:+59513782 | None:intergenic |
| GGTAATTACACCAACATAAT+GGG | 0.361813 | 4_4:-59514508 | Msa0691420:CDS |
| GGATAGTCCTCTAGTTTGAT+TGG | 0.388786 | 4_4:+59514384 | None:intergenic |
| TCAAGTGATACTTCATTCCT+TGG | 0.409861 | 4_4:-59513956 | Msa0691420:CDS |
| TATACAAGGAAGAAATTTGT+TGG | 0.410040 | 4_4:+59514068 | None:intergenic |
| TAATAACTATCAGCTAAATT+GGG | 0.410339 | 4_4:-59514209 | Msa0691420:CDS |
| GAAATTGGTTTGAAAATTGA+AGG | 0.411531 | 4_4:+59514442 | None:intergenic |
| AAACAACAGCTCATTATTAA+GGG | 0.419725 | 4_4:-59514539 | Msa0691420:CDS |
| CCTTGCTGTTTCTTCTGCTA+AGG | 0.425077 | 4_4:+59514582 | None:intergenic |
| ATGGAGGAGGAGGGCAAACT+AGG | 0.425755 | 4_4:-59513748 | Msa0691420:CDS |
| GTGTCCACCATGATCCTTCA+AGG | 0.447211 | 4_4:-59515588 | Msa0691420:CDS |
| AAACTAGAGGACTATCCCTT+TGG | 0.451953 | 4_4:-59514378 | Msa0691420:CDS |
| ACTAATGATGTGAACAAGTT+TGG | 0.457937 | 4_4:-59513899 | Msa0691420:CDS |
| GTTATGCTGTTCAGTCAGAT+TGG | 0.460465 | 4_4:-59515480 | Msa0691420:CDS |
| TTTGAAAATTGAAGGAAAAT+GGG | 0.463212 | 4_4:+59514450 | None:intergenic |
| GTGAACAAGTTTGGTGGTAC+TGG | 0.464971 | 4_4:-59513890 | Msa0691420:CDS |
| TTCTGCTAAGGCATCACAAA+AGG | 0.465130 | 4_4:+59514594 | None:intergenic |
| GATCTCTGCTTAAGCTTCCA+TGG | 0.466510 | 4_4:+59515658 | None:intergenic |
| ATCCAACCGTTGATTGATGA+AGG | 0.480114 | 4_4:+59513689 | None:intergenic |
| AAGTCACCAAGTGCCCTTGA+AGG | 0.485801 | 4_4:+59515574 | None:intergenic |
| CAAGGTGAAGAGAATGGAGG+AGG | 0.488030 | 4_4:-59513761 | Msa0691420:CDS |
| GGTGAAGAGAATGGAGGAGG+AGG | 0.498727 | 4_4:-59513758 | Msa0691420:CDS |
| AGTTCATTACTCATTAGTCT+TGG | 0.500073 | 4_4:-59513851 | Msa0691420:CDS |
| TTTGGTGGTACTGGTATGTA+TGG | 0.508130 | 4_4:-59513881 | Msa0691420:CDS |
| CAAACTAGAATTTCCATTGG+TGG | 0.513839 | 4_4:+59514309 | None:intergenic |
| CATGATCCTTCAAGGGCACT+TGG | 0.515364 | 4_4:-59515580 | Msa0691420:CDS |
| ACCCTTCATCAATCAACGGT+TGG | 0.521243 | 4_4:-59513691 | Msa0691420:CDS |
| ACTAGAATTTCCATTGGTGG+TGG | 0.523314 | 4_4:+59514312 | None:intergenic |
| GGGCACTTGGTGACTTAACT+GGG | 0.533578 | 4_4:-59515567 | Msa0691420:CDS |
| GAAAGCATGGTGAAAAGAAG+TGG | 0.534661 | 4_4:-59515525 | Msa0691420:CDS |
| TCATCAAGAGAAATTATGTA+TGG | 0.535107 | 4_4:-59514259 | Msa0691420:CDS |
| AGATGTTGTTCCCATTATGT+TGG | 0.540728 | 4_4:+59514498 | None:intergenic |
| CAAGTGCCCTTGAAGGATCA+TGG | 0.541455 | 4_4:+59515581 | None:intergenic |
| TGGAGGAGGAGGGCAAACTA+GGG | 0.541684 | 4_4:-59513747 | Msa0691420:CDS |
| GATTGATGAAGGGTGACAAA+TGG | 0.546230 | 4_4:+59513700 | None:intergenic |
| ACAATGATAACCACCACCAA+TGG | 0.547801 | 4_4:-59514322 | Msa0691420:CDS |
| TAGTTATTAGAATATGGTGG+AGG | 0.547810 | 4_4:+59514223 | None:intergenic |
| GTGGTTATCATTGTTTCATG+AGG | 0.548154 | 4_4:+59514331 | None:intergenic |
| ACTCATTAGTCTTGGCAATG+AGG | 0.548463 | 4_4:-59513843 | Msa0691420:CDS |
| ATGCAAACTAGAATTTCCAT+TGG | 0.550334 | 4_4:+59514306 | None:intergenic |
| ATTTCAAACCTAAACTTCCA+AGG | 0.550495 | 4_4:+59513939 | None:intergenic |
| AAAATTGAAGGAAAATGGGT+GGG | 0.556048 | 4_4:+59514454 | None:intergenic |
| TCAAGAGAAATTATGTATGG+TGG | 0.557028 | 4_4:-59514256 | Msa0691420:CDS |
| TTGTGTGAAACATGTGGGAA+AGG | 0.560203 | 4_4:-59515730 | Msa0691420:CDS |
| TTGGTGTTGTGAGCTATACA+AGG | 0.564753 | 4_4:+59514054 | None:intergenic |
| GACGTGGACATAATCTTCCA+TGG | 0.576178 | 4_4:-59515675 | Msa0691420:CDS |
| TCATTATTAAGGGGTAACAT+TGG | 0.591412 | 4_4:-59514529 | Msa0691420:CDS |
| GCACATGTCTACGTTTAGAA+GGG | 0.592522 | 4_4:+59513783 | None:intergenic |
| GAAAATTGAAGGAAAATGGG+TGG | 0.593569 | 4_4:+59514453 | None:intergenic |
| TGTCACCCTTCATCAATCAA+CGG | 0.597702 | 4_4:-59513695 | Msa0691420:CDS |
| CATGTGCAAGGTGAAGAGAA+TGG | 0.598271 | 4_4:-59513767 | Msa0691420:CDS |
| AGTTATTAGAATATGGTGGA+GGG | 0.602415 | 4_4:+59514224 | None:intergenic |
| GTGAAGAGAATGGAGGAGGA+GGG | 0.608002 | 4_4:-59513757 | Msa0691420:CDS |
| AAGGAATGAAGTATCACTTG+AGG | 0.616790 | 4_4:+59513958 | None:intergenic |
| TTAACATTAATGTTTCCTAG+TGG | 0.620526 | 4_4:+59514121 | None:intergenic |
| AACAACAGCTCATTATTAAG+GGG | 0.621367 | 4_4:-59514538 | Msa0691420:CDS |
| AATGATGTGAACAAGTTTGG+TGG | 0.623059 | 4_4:-59513896 | Msa0691420:CDS |
| TCCAACCGTTGATTGATGAA+GGG | 0.630023 | 4_4:+59513690 | None:intergenic |
| TGTCCACCATGATCCTTCAA+GGG | 0.631692 | 4_4:-59515587 | Msa0691420:CDS |
| GAATCAACCAATCAAACTAG+AGG | 0.641739 | 4_4:-59514391 | Msa0691420:CDS |
| TGATAGTTATTAGAATATGG+TGG | 0.647387 | 4_4:+59514220 | None:intergenic |
| CCTTAGCAGAAGAAACAGCA+AGG | 0.647661 | 4_4:-59514582 | Msa0691420:CDS |
| TTTGCTGAAGATGTTTGATG+TGG | 0.648760 | 4_4:+59514028 | None:intergenic |
| ACTACAACTTCACTTCCACT+AGG | 0.649669 | 4_4:-59514136 | Msa0691420:CDS |
| GATTCTTGTGTGAAACATGT+GGG | 0.660378 | 4_4:-59515735 | Msa0691420:CDS |
| AGATTCTTGTGTGAAACATG+TGG | 0.668573 | 4_4:-59515736 | Msa0691420:CDS |
| AGAGAATACAAATGTGACTG+TGG | 0.675625 | 4_4:-59515430 | Msa0691420:CDS |
| TCTAAACGTAGACATGTGCA+AGG | 0.685474 | 4_4:-59513779 | Msa0691420:CDS |
| CTTAGCAGAAGAAACAGCAA+GGG | 0.690135 | 4_4:-59514581 | Msa0691420:CDS |
| AATCTACAGCTACATAGACG+TGG | 0.700320 | 4_4:-59515691 | Msa0691420:CDS |
| GTGCAAGGTGAAGAGAATGG+AGG | 0.708411 | 4_4:-59513764 | Msa0691420:CDS |
| GTGCCCTTGAAGGATCATGG+TGG | 0.739339 | 4_4:+59515584 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATCAGATATATAATTTTTTT+TGG | + | chr4_4:59514180-59514199 | None:intergenic | 10.0% |
| !! | AAAATTATATATCTGATATA+AGG | - | chr4_4:59514183-59514202 | Msa0691420:CDS | 10.0% |
| !! | GTTTATATATAAATATTAGA+AGG | + | chr4_4:59514727-59514746 | None:intergenic | 10.0% |
| !!! | TTAATATTTGTGAATATTTT+TGG | - | chr4_4:59514782-59514801 | Msa0691420:intron | 10.0% |
| !!! | ATCAGATATATAATTTTTTT+TGG | + | chr4_4:59514180-59514199 | None:intergenic | 10.0% |
| !! | AAAATTATATATCTGATATA+AGG | - | chr4_4:59514183-59514202 | Msa0691420:CDS | 10.0% |
| !! | GTTTATATATAAATATTAGA+AGG | + | chr4_4:59514727-59514746 | None:intergenic | 10.0% |
| !!! | TTAATATTTGTGAATATTTT+TGG | - | chr4_4:59514782-59514801 | Msa0691420:intron | 10.0% |
| !! | TTAGTTTAAACAAATGATTA+AGG | - | chr4_4:59514296-59514315 | Msa0691420:CDS | 15.0% |
| !! | AAACATTAATGTTAATGTTA+AGG | - | chr4_4:59515320-59515339 | Msa0691420:intron | 15.0% |
| !! | TTAGTTTAAACAAATGATTA+AGG | - | chr4_4:59514296-59514315 | Msa0691420:CDS | 15.0% |
| !! | AAACATTAATGTTAATGTTA+AGG | - | chr4_4:59515320-59515339 | Msa0691420:intron | 15.0% |
| !!! | ATGTTTTTTTTTTGCCTATT+TGG | - | chr4_4:59514241-59514260 | Msa0691420:CDS | 20.0% |
| !! | TTTGAAAATTGAAGGAAAAT+GGG | + | chr4_4:59514986-59515005 | None:intergenic | 20.0% |
| !! | TAATAACTATCAGCTAAATT+GGG | - | chr4_4:59515224-59515243 | Msa0691420:intron | 20.0% |
| !! | TAGTACTAGTAATTAATTCT+TGG | + | chr4_4:59515281-59515300 | None:intergenic | 20.0% |
| !!! | ATGTTTTTTTTTTGCCTATT+TGG | - | chr4_4:59514241-59514260 | Msa0691420:CDS | 20.0% |
| !! | TTTGAAAATTGAAGGAAAAT+GGG | + | chr4_4:59514986-59515005 | None:intergenic | 20.0% |
| !! | TAATAACTATCAGCTAAATT+GGG | - | chr4_4:59515224-59515243 | Msa0691420:intron | 20.0% |
| !! | TAGTACTAGTAATTAATTCT+TGG | + | chr4_4:59515281-59515300 | None:intergenic | 20.0% |
| ! | TAATCGGTATATCTGATATA+AGG | - | chr4_4:59514097-59514116 | Msa0691420:CDS | 25.0% |
| ! | ATAAGGATCAAGTTTAAAAG+TGG | - | chr4_4:59514200-59514219 | Msa0691420:CDS | 25.0% |
| ! | TATTCTCAAAAAAGCCAAAT+AGG | + | chr4_4:59514258-59514277 | None:intergenic | 25.0% |
| ! | TTGAGAATAAAAAGTGAATG+AGG | - | chr4_4:59514269-59514288 | Msa0691420:CDS | 25.0% |
| ! | AATTATATACATAGTGAGTG+AGG | + | chr4_4:59514422-59514441 | None:intergenic | 25.0% |
| !!! | TTTATTTTCACACTAGTTTG+AGG | - | chr4_4:59514457-59514476 | Msa0691420:CDS | 25.0% |
| ! | GTTAACCAACTACTATATAT+AGG | - | chr4_4:59514482-59514501 | Msa0691420:CDS | 25.0% |
| !! | AACTCATTAACCAAATCTTT+TGG | - | chr4_4:59514696-59514715 | Msa0691420:intron | 25.0% |
| ! | TAAACAACAGCTCATTATTA+AGG | - | chr4_4:59514893-59514912 | Msa0691420:intron | 25.0% |
| ! | AAACAACAGCTCATTATTAA+GGG | - | chr4_4:59514894-59514913 | Msa0691420:intron | 25.0% |
| ! | GTTTGAAAATTGAAGGAAAA+TGG | + | chr4_4:59514987-59515006 | None:intergenic | 25.0% |
| !!! | GAAATTGGTTTGAAAATTGA+AGG | + | chr4_4:59514994-59515013 | None:intergenic | 25.0% |
| !!! | AGAATTTTGATTCATCCAAA+GGG | + | chr4_4:59515073-59515092 | None:intergenic | 25.0% |
| ! | TCATCAAGAGAAATTATGTA+TGG | - | chr4_4:59515174-59515193 | Msa0691420:intron | 25.0% |
| ! | TGATAGTTATTAGAATATGG+TGG | + | chr4_4:59515216-59515235 | None:intergenic | 25.0% |
| ! | AGCTGATAGTTATTAGAATA+TGG | + | chr4_4:59515219-59515238 | None:intergenic | 25.0% |
| ! | CTAATAACTATCAGCTAAAT+TGG | - | chr4_4:59515223-59515242 | Msa0691420:intron | 25.0% |
| ! | TTAACATTAATGTTTCCTAG+TGG | + | chr4_4:59515315-59515334 | None:intergenic | 25.0% |
| ! | TATACAAGGAAGAAATTTGT+TGG | + | chr4_4:59515368-59515387 | None:intergenic | 25.0% |
| ! | TAATCGGTATATCTGATATA+AGG | - | chr4_4:59514097-59514116 | Msa0691420:CDS | 25.0% |
| ! | ATAAGGATCAAGTTTAAAAG+TGG | - | chr4_4:59514200-59514219 | Msa0691420:CDS | 25.0% |
| ! | TATTCTCAAAAAAGCCAAAT+AGG | + | chr4_4:59514258-59514277 | None:intergenic | 25.0% |
| ! | TTGAGAATAAAAAGTGAATG+AGG | - | chr4_4:59514269-59514288 | Msa0691420:CDS | 25.0% |
| ! | AATTATATACATAGTGAGTG+AGG | + | chr4_4:59514422-59514441 | None:intergenic | 25.0% |
| !!! | TTTATTTTCACACTAGTTTG+AGG | - | chr4_4:59514457-59514476 | Msa0691420:CDS | 25.0% |
| ! | GTTAACCAACTACTATATAT+AGG | - | chr4_4:59514482-59514501 | Msa0691420:CDS | 25.0% |
| !! | AACTCATTAACCAAATCTTT+TGG | - | chr4_4:59514696-59514715 | Msa0691420:intron | 25.0% |
| ! | TAAACAACAGCTCATTATTA+AGG | - | chr4_4:59514893-59514912 | Msa0691420:intron | 25.0% |
| ! | AAACAACAGCTCATTATTAA+GGG | - | chr4_4:59514894-59514913 | Msa0691420:intron | 25.0% |
| ! | GTTTGAAAATTGAAGGAAAA+TGG | + | chr4_4:59514987-59515006 | None:intergenic | 25.0% |
| !!! | GAAATTGGTTTGAAAATTGA+AGG | + | chr4_4:59514994-59515013 | None:intergenic | 25.0% |
| !!! | AGAATTTTGATTCATCCAAA+GGG | + | chr4_4:59515073-59515092 | None:intergenic | 25.0% |
| ! | TCATCAAGAGAAATTATGTA+TGG | - | chr4_4:59515174-59515193 | Msa0691420:intron | 25.0% |
| ! | TGATAGTTATTAGAATATGG+TGG | + | chr4_4:59515216-59515235 | None:intergenic | 25.0% |
| ! | AGCTGATAGTTATTAGAATA+TGG | + | chr4_4:59515219-59515238 | None:intergenic | 25.0% |
| ! | CTAATAACTATCAGCTAAAT+TGG | - | chr4_4:59515223-59515242 | Msa0691420:intron | 25.0% |
| ! | TTAACATTAATGTTTCCTAG+TGG | + | chr4_4:59515315-59515334 | None:intergenic | 25.0% |
| ! | TATACAAGGAAGAAATTTGT+TGG | + | chr4_4:59515368-59515387 | None:intergenic | 25.0% |
| TGATCAGAATAACATAGAGA+TGG | + | chr4_4:59514069-59514088 | None:intergenic | 30.0% | |
| GATCAAGTTTAAAAGTGGTT+AGG | - | chr4_4:59514205-59514224 | Msa0691420:CDS | 30.0% | |
| ACAAGCCTATATATAGTAGT+TGG | + | chr4_4:59514490-59514509 | None:intergenic | 30.0% | |
| AGCTAGACAAAAGTCAAAAT+GGG | + | chr4_4:59514553-59514572 | None:intergenic | 30.0% | |
| TAATGAGTTTCAGTTAAGGA+CGG | + | chr4_4:59514685-59514704 | None:intergenic | 30.0% | |
| TGGTTAATGAGTTTCAGTTA+AGG | + | chr4_4:59514689-59514708 | None:intergenic | 30.0% | |
| AACAACAGCTCATTATTAAG+GGG | - | chr4_4:59514895-59514914 | Msa0691420:intron | 30.0% | |
| TCATTATTAAGGGGTAACAT+TGG | - | chr4_4:59514904-59514923 | Msa0691420:intron | 30.0% | |
| TGGTAATTACACCAACATAA+TGG | - | chr4_4:59514924-59514943 | Msa0691420:intron | 30.0% | |
| GGTAATTACACCAACATAAT+GGG | - | chr4_4:59514925-59514944 | Msa0691420:intron | 30.0% | |
| AAAATTGAAGGAAAATGGGT+GGG | + | chr4_4:59514982-59515001 | None:intergenic | 30.0% | |
| !!! | GAGAATTTTGATTCATCCAA+AGG | + | chr4_4:59515074-59515093 | None:intergenic | 30.0% |
| ATGCAAACTAGAATTTCCAT+TGG | + | chr4_4:59515130-59515149 | None:intergenic | 30.0% | |
| TCAAGAGAAATTATGTATGG+TGG | - | chr4_4:59515177-59515196 | Msa0691420:intron | 30.0% | |
| ! | AGTTATTAGAATATGGTGGA+GGG | + | chr4_4:59515212-59515231 | None:intergenic | 30.0% |
| TAGTTATTAGAATATGGTGG+AGG | + | chr4_4:59515213-59515232 | None:intergenic | 30.0% | |
| ! | TATCAGCTAAATTGGGTTTT+TGG | - | chr4_4:59515231-59515250 | Msa0691420:intron | 30.0% |
| AAGATGTTTGATGTGGTATT+TGG | + | chr4_4:59515401-59515420 | None:intergenic | 30.0% | |
| TTACAAAAAGCTGCTCAAAT+TGG | - | chr4_4:59515447-59515466 | Msa0691420:CDS | 30.0% | |
| ATTTCAAACCTAAACTTCCA+AGG | + | chr4_4:59515497-59515516 | None:intergenic | 30.0% | |
| ACTAATGATGTGAACAAGTT+TGG | - | chr4_4:59515534-59515553 | Msa0691420:CDS | 30.0% | |
| ! | AGTTCATTACTCATTAGTCT+TGG | - | chr4_4:59515582-59515601 | Msa0691420:CDS | 30.0% |
| TGATCAGAATAACATAGAGA+TGG | + | chr4_4:59514069-59514088 | None:intergenic | 30.0% | |
| GATCAAGTTTAAAAGTGGTT+AGG | - | chr4_4:59514205-59514224 | Msa0691420:CDS | 30.0% | |
| ACAAGCCTATATATAGTAGT+TGG | + | chr4_4:59514490-59514509 | None:intergenic | 30.0% | |
| AGCTAGACAAAAGTCAAAAT+GGG | + | chr4_4:59514553-59514572 | None:intergenic | 30.0% | |
| TAATGAGTTTCAGTTAAGGA+CGG | + | chr4_4:59514685-59514704 | None:intergenic | 30.0% | |
| TGGTTAATGAGTTTCAGTTA+AGG | + | chr4_4:59514689-59514708 | None:intergenic | 30.0% | |
| AACAACAGCTCATTATTAAG+GGG | - | chr4_4:59514895-59514914 | Msa0691420:intron | 30.0% | |
| TCATTATTAAGGGGTAACAT+TGG | - | chr4_4:59514904-59514923 | Msa0691420:intron | 30.0% | |
| TGGTAATTACACCAACATAA+TGG | - | chr4_4:59514924-59514943 | Msa0691420:intron | 30.0% | |
| GGTAATTACACCAACATAAT+GGG | - | chr4_4:59514925-59514944 | Msa0691420:intron | 30.0% | |
| AAAATTGAAGGAAAATGGGT+GGG | + | chr4_4:59514982-59515001 | None:intergenic | 30.0% | |
| !!! | GAGAATTTTGATTCATCCAA+AGG | + | chr4_4:59515074-59515093 | None:intergenic | 30.0% |
| ATGCAAACTAGAATTTCCAT+TGG | + | chr4_4:59515130-59515149 | None:intergenic | 30.0% | |
| TCAAGAGAAATTATGTATGG+TGG | - | chr4_4:59515177-59515196 | Msa0691420:intron | 30.0% | |
| ! | AGTTATTAGAATATGGTGGA+GGG | + | chr4_4:59515212-59515231 | None:intergenic | 30.0% |
| TAGTTATTAGAATATGGTGG+AGG | + | chr4_4:59515213-59515232 | None:intergenic | 30.0% | |
| ! | TATCAGCTAAATTGGGTTTT+TGG | - | chr4_4:59515231-59515250 | Msa0691420:intron | 30.0% |
| AAGATGTTTGATGTGGTATT+TGG | + | chr4_4:59515401-59515420 | None:intergenic | 30.0% | |
| TTACAAAAAGCTGCTCAAAT+TGG | - | chr4_4:59515447-59515466 | Msa0691420:CDS | 30.0% | |
| ATTTCAAACCTAAACTTCCA+AGG | + | chr4_4:59515497-59515516 | None:intergenic | 30.0% | |
| ACTAATGATGTGAACAAGTT+TGG | - | chr4_4:59515534-59515553 | Msa0691420:CDS | 30.0% | |
| ! | AGTTCATTACTCATTAGTCT+TGG | - | chr4_4:59515582-59515601 | Msa0691420:CDS | 30.0% |
| AGATTCTTGTGTGAAACATG+TGG | - | chr4_4:59513697-59513716 | Msa0691420:CDS | 35.0% | |
| GATTCTTGTGTGAAACATGT+GGG | - | chr4_4:59513698-59513717 | Msa0691420:CDS | 35.0% | |
| ! | AAGCACTTTTGTAGAAAGCA+TGG | - | chr4_4:59513895-59513914 | Msa0691420:CDS | 35.0% |
| AAAGCTCACTCAAAAACATG+TGG | - | chr4_4:59513976-59513995 | Msa0691420:CDS | 35.0% | |
| AGAGAATACAAATGTGACTG+TGG | - | chr4_4:59514003-59514022 | Msa0691420:CDS | 35.0% | |
| ! | ACTGTGGAACTATCTTTTCA+AGG | - | chr4_4:59514019-59514038 | Msa0691420:CDS | 35.0% |
| TAACATAGAGATGGATGGAT+AGG | + | chr4_4:59514060-59514079 | None:intergenic | 35.0% | |
| CAGAATAACATAGAGATGGA+TGG | + | chr4_4:59514065-59514084 | None:intergenic | 35.0% | |
| TCTGATCACATCGTTGTAAT+CGG | - | chr4_4:59514081-59514100 | Msa0691420:CDS | 35.0% | |
| TTAGGGCAAAAACTGCAAAA+AGG | + | chr4_4:59514362-59514381 | None:intergenic | 35.0% | |
| !! | CCATGAACTTTTGTCGTTTA+GGG | + | chr4_4:59514379-59514398 | None:intergenic | 35.0% |
| !! | ACCATGAACTTTTGTCGTTT+AGG | + | chr4_4:59514380-59514399 | None:intergenic | 35.0% |
| AACGACAAAAGTTCATGGTT+TGG | - | chr4_4:59514381-59514400 | Msa0691420:CDS | 35.0% | |
| AAAGTCAAAATGGGAGTAAC+CGG | + | chr4_4:59514544-59514563 | None:intergenic | 35.0% | |
| GAGCTAGACAAAAGTCAAAA+TGG | + | chr4_4:59514554-59514573 | None:intergenic | 35.0% | |
| GAAGGAACAACCAAAAGATT+TGG | + | chr4_4:59514709-59514728 | None:intergenic | 35.0% | |
| !!! | GTGAATATTTTTGGTTGAGC+AGG | - | chr4_4:59514791-59514810 | Msa0691420:intron | 35.0% |
| AGATGTTGTTCCCATTATGT+TGG | + | chr4_4:59514938-59514957 | None:intergenic | 35.0% | |
| GAAAATTGAAGGAAAATGGG+TGG | + | chr4_4:59514983-59515002 | None:intergenic | 35.0% | |
| TGATGATCAGGAGTTGAAAT+TGG | + | chr4_4:59515009-59515028 | None:intergenic | 35.0% | |
| ! | TGATGATGATGATGATGATC+AGG | + | chr4_4:59515021-59515040 | None:intergenic | 35.0% |
| GAATCAACCAATCAAACTAG+AGG | - | chr4_4:59515042-59515061 | Msa0691420:intron | 35.0% | |
| GTGGTTATCATTGTTTCATG+AGG | + | chr4_4:59515105-59515124 | None:intergenic | 35.0% | |
| CAAACTAGAATTTCCATTGG+TGG | + | chr4_4:59515127-59515146 | None:intergenic | 35.0% | |
| TTTGCTGAAGATGTTTGATG+TGG | + | chr4_4:59515408-59515427 | None:intergenic | 35.0% | |
| ! | AAGGAATGAAGTATCACTTG+AGG | + | chr4_4:59515478-59515497 | None:intergenic | 35.0% |
| TCAAGTGATACTTCATTCCT+TGG | - | chr4_4:59515477-59515496 | Msa0691420:CDS | 35.0% | |
| ACTTCATTCCTTGGAAGTTT+AGG | - | chr4_4:59515486-59515505 | Msa0691420:CDS | 35.0% | |
| AATGATGTGAACAAGTTTGG+TGG | - | chr4_4:59515537-59515556 | Msa0691420:CDS | 35.0% | |
| AGATTCTTGTGTGAAACATG+TGG | - | chr4_4:59513697-59513716 | Msa0691420:CDS | 35.0% | |
| GATTCTTGTGTGAAACATGT+GGG | - | chr4_4:59513698-59513717 | Msa0691420:CDS | 35.0% | |
| ! | AAGCACTTTTGTAGAAAGCA+TGG | - | chr4_4:59513895-59513914 | Msa0691420:CDS | 35.0% |
| AAAGCTCACTCAAAAACATG+TGG | - | chr4_4:59513976-59513995 | Msa0691420:CDS | 35.0% | |
| AGAGAATACAAATGTGACTG+TGG | - | chr4_4:59514003-59514022 | Msa0691420:CDS | 35.0% | |
| ! | ACTGTGGAACTATCTTTTCA+AGG | - | chr4_4:59514019-59514038 | Msa0691420:CDS | 35.0% |
| TAACATAGAGATGGATGGAT+AGG | + | chr4_4:59514060-59514079 | None:intergenic | 35.0% | |
| CAGAATAACATAGAGATGGA+TGG | + | chr4_4:59514065-59514084 | None:intergenic | 35.0% | |
| TCTGATCACATCGTTGTAAT+CGG | - | chr4_4:59514081-59514100 | Msa0691420:CDS | 35.0% | |
| TTAGGGCAAAAACTGCAAAA+AGG | + | chr4_4:59514362-59514381 | None:intergenic | 35.0% | |
| !! | CCATGAACTTTTGTCGTTTA+GGG | + | chr4_4:59514379-59514398 | None:intergenic | 35.0% |
| !! | ACCATGAACTTTTGTCGTTT+AGG | + | chr4_4:59514380-59514399 | None:intergenic | 35.0% |
| AACGACAAAAGTTCATGGTT+TGG | - | chr4_4:59514381-59514400 | Msa0691420:CDS | 35.0% | |
| AAAGTCAAAATGGGAGTAAC+CGG | + | chr4_4:59514544-59514563 | None:intergenic | 35.0% | |
| GAGCTAGACAAAAGTCAAAA+TGG | + | chr4_4:59514554-59514573 | None:intergenic | 35.0% | |
| GAAGGAACAACCAAAAGATT+TGG | + | chr4_4:59514709-59514728 | None:intergenic | 35.0% | |
| !!! | GTGAATATTTTTGGTTGAGC+AGG | - | chr4_4:59514791-59514810 | Msa0691420:intron | 35.0% |
| AGATGTTGTTCCCATTATGT+TGG | + | chr4_4:59514938-59514957 | None:intergenic | 35.0% | |
| GAAAATTGAAGGAAAATGGG+TGG | + | chr4_4:59514983-59515002 | None:intergenic | 35.0% | |
| TGATGATCAGGAGTTGAAAT+TGG | + | chr4_4:59515009-59515028 | None:intergenic | 35.0% | |
| ! | TGATGATGATGATGATGATC+AGG | + | chr4_4:59515021-59515040 | None:intergenic | 35.0% |
| GAATCAACCAATCAAACTAG+AGG | - | chr4_4:59515042-59515061 | Msa0691420:intron | 35.0% | |
| GTGGTTATCATTGTTTCATG+AGG | + | chr4_4:59515105-59515124 | None:intergenic | 35.0% | |
| CAAACTAGAATTTCCATTGG+TGG | + | chr4_4:59515127-59515146 | None:intergenic | 35.0% | |
| TTTGCTGAAGATGTTTGATG+TGG | + | chr4_4:59515408-59515427 | None:intergenic | 35.0% | |
| ! | AAGGAATGAAGTATCACTTG+AGG | + | chr4_4:59515478-59515497 | None:intergenic | 35.0% |
| TCAAGTGATACTTCATTCCT+TGG | - | chr4_4:59515477-59515496 | Msa0691420:CDS | 35.0% | |
| ACTTCATTCCTTGGAAGTTT+AGG | - | chr4_4:59515486-59515505 | Msa0691420:CDS | 35.0% | |
| AATGATGTGAACAAGTTTGG+TGG | - | chr4_4:59515537-59515556 | Msa0691420:CDS | 35.0% | |
| TTGTGTGAAACATGTGGGAA+AGG | - | chr4_4:59513703-59513722 | Msa0691420:CDS | 40.0% | |
| AATCTACAGCTACATAGACG+TGG | - | chr4_4:59513742-59513761 | Msa0691420:CDS | 40.0% | |
| ! | GAAAGCATGGTGAAAAGAAG+TGG | - | chr4_4:59513908-59513927 | Msa0691420:CDS | 40.0% |
| GTTATGCTGTTCAGTCAGAT+TGG | - | chr4_4:59513953-59513972 | Msa0691420:CDS | 40.0% | |
| TAGAGATGGATGGATAGGTT+AGG | + | chr4_4:59514055-59514074 | None:intergenic | 40.0% | |
| ! | GTTGCTCGAGAAATTAGTCT+CGG | - | chr4_4:59514126-59514145 | Msa0691420:CDS | 40.0% |
| CCCTAAACGACAAAAGTTCA+TGG | - | chr4_4:59514376-59514395 | Msa0691420:CDS | 40.0% | |
| TTATGCCGTACTCATGTTTC+CGG | - | chr4_4:59514522-59514541 | Msa0691420:CDS | 40.0% | |
| AGTAACCGGAAACATGAGTA+CGG | + | chr4_4:59514530-59514549 | None:intergenic | 40.0% | |
| GATAACCAGAGTTCAAATGC+GGG | + | chr4_4:59514653-59514672 | None:intergenic | 40.0% | |
| GGATAACCAGAGTTCAAATG+CGG | + | chr4_4:59514654-59514673 | None:intergenic | 40.0% | |
| !! | CAGTTAAGGACGGATTGTTT+GGG | + | chr4_4:59514675-59514694 | None:intergenic | 40.0% |
| !! | TCAGTTAAGGACGGATTGTT+TGG | + | chr4_4:59514676-59514695 | None:intergenic | 40.0% |
| ! | TTCTGCTAAGGCATCACAAA+AGG | + | chr4_4:59514842-59514861 | None:intergenic | 40.0% |
| CTTAGCAGAAGAAACAGCAA+GGG | - | chr4_4:59514852-59514871 | Msa0691420:intron | 40.0% | |
| ! | GGGTGGGCATATTGTTATTA+GGG | + | chr4_4:59514966-59514985 | None:intergenic | 40.0% |
| ! | TGGGTGGGCATATTGTTATT+AGG | + | chr4_4:59514967-59514986 | None:intergenic | 40.0% |
| ! | GGATAGTCCTCTAGTTTGAT+TGG | + | chr4_4:59515052-59515071 | None:intergenic | 40.0% |
| AAACTAGAGGACTATCCCTT+TGG | - | chr4_4:59515055-59515074 | Msa0691420:intron | 40.0% | |
| ACAATGATAACCACCACCAA+TGG | - | chr4_4:59515111-59515130 | Msa0691420:intron | 40.0% | |
| ACTAGAATTTCCATTGGTGG+TGG | + | chr4_4:59515124-59515143 | None:intergenic | 40.0% | |
| ACTACAACTTCACTTCCACT+AGG | - | chr4_4:59515297-59515316 | Msa0691420:intron | 40.0% | |
| !! | TTGGTGTTGTGAGCTATACA+AGG | + | chr4_4:59515382-59515401 | None:intergenic | 40.0% |
| !! | TTTGGTGGTACTGGTATGTA+TGG | - | chr4_4:59515552-59515571 | Msa0691420:CDS | 40.0% |
| !! | ACTCATTAGTCTTGGCAATG+AGG | - | chr4_4:59515590-59515609 | Msa0691420:CDS | 40.0% |
| GCACATGTCTACGTTTAGAA+GGG | + | chr4_4:59515653-59515672 | None:intergenic | 40.0% | |
| TGCACATGTCTACGTTTAGA+AGG | + | chr4_4:59515654-59515673 | None:intergenic | 40.0% | |
| TCTAAACGTAGACATGTGCA+AGG | - | chr4_4:59515654-59515673 | Msa0691420:CDS | 40.0% | |
| !! | ACTAGGGATTTTCTTGGTGT+TGG | - | chr4_4:59515702-59515721 | Msa0691420:CDS | 40.0% |
| GATTGATGAAGGGTGACAAA+TGG | + | chr4_4:59515736-59515755 | None:intergenic | 40.0% | |
| TGTCACCCTTCATCAATCAA+CGG | - | chr4_4:59515738-59515757 | Msa0691420:CDS | 40.0% | |
| ! | TCCAACCGTTGATTGATGAA+GGG | + | chr4_4:59515746-59515765 | None:intergenic | 40.0% |
| ! | ATCCAACCGTTGATTGATGA+AGG | + | chr4_4:59515747-59515766 | None:intergenic | 40.0% |
| TTGTGTGAAACATGTGGGAA+AGG | - | chr4_4:59513703-59513722 | Msa0691420:CDS | 40.0% | |
| AATCTACAGCTACATAGACG+TGG | - | chr4_4:59513742-59513761 | Msa0691420:CDS | 40.0% | |
| ! | GAAAGCATGGTGAAAAGAAG+TGG | - | chr4_4:59513908-59513927 | Msa0691420:CDS | 40.0% |
| GTTATGCTGTTCAGTCAGAT+TGG | - | chr4_4:59513953-59513972 | Msa0691420:CDS | 40.0% | |
| TAGAGATGGATGGATAGGTT+AGG | + | chr4_4:59514055-59514074 | None:intergenic | 40.0% | |
| ! | GTTGCTCGAGAAATTAGTCT+CGG | - | chr4_4:59514126-59514145 | Msa0691420:CDS | 40.0% |
| CCCTAAACGACAAAAGTTCA+TGG | - | chr4_4:59514376-59514395 | Msa0691420:CDS | 40.0% | |
| TTATGCCGTACTCATGTTTC+CGG | - | chr4_4:59514522-59514541 | Msa0691420:CDS | 40.0% | |
| AGTAACCGGAAACATGAGTA+CGG | + | chr4_4:59514530-59514549 | None:intergenic | 40.0% | |
| GATAACCAGAGTTCAAATGC+GGG | + | chr4_4:59514653-59514672 | None:intergenic | 40.0% | |
| GGATAACCAGAGTTCAAATG+CGG | + | chr4_4:59514654-59514673 | None:intergenic | 40.0% | |
| !! | CAGTTAAGGACGGATTGTTT+GGG | + | chr4_4:59514675-59514694 | None:intergenic | 40.0% |
| !! | TCAGTTAAGGACGGATTGTT+TGG | + | chr4_4:59514676-59514695 | None:intergenic | 40.0% |
| ! | TTCTGCTAAGGCATCACAAA+AGG | + | chr4_4:59514842-59514861 | None:intergenic | 40.0% |
| CTTAGCAGAAGAAACAGCAA+GGG | - | chr4_4:59514852-59514871 | Msa0691420:intron | 40.0% | |
| ! | GGGTGGGCATATTGTTATTA+GGG | + | chr4_4:59514966-59514985 | None:intergenic | 40.0% |
| ! | TGGGTGGGCATATTGTTATT+AGG | + | chr4_4:59514967-59514986 | None:intergenic | 40.0% |
| ! | GGATAGTCCTCTAGTTTGAT+TGG | + | chr4_4:59515052-59515071 | None:intergenic | 40.0% |
| AAACTAGAGGACTATCCCTT+TGG | - | chr4_4:59515055-59515074 | Msa0691420:intron | 40.0% | |
| ACAATGATAACCACCACCAA+TGG | - | chr4_4:59515111-59515130 | Msa0691420:intron | 40.0% | |
| ACTAGAATTTCCATTGGTGG+TGG | + | chr4_4:59515124-59515143 | None:intergenic | 40.0% | |
| ACTACAACTTCACTTCCACT+AGG | - | chr4_4:59515297-59515316 | Msa0691420:intron | 40.0% | |
| !! | TTGGTGTTGTGAGCTATACA+AGG | + | chr4_4:59515382-59515401 | None:intergenic | 40.0% |
| !! | TTTGGTGGTACTGGTATGTA+TGG | - | chr4_4:59515552-59515571 | Msa0691420:CDS | 40.0% |
| !! | ACTCATTAGTCTTGGCAATG+AGG | - | chr4_4:59515590-59515609 | Msa0691420:CDS | 40.0% |
| GCACATGTCTACGTTTAGAA+GGG | + | chr4_4:59515653-59515672 | None:intergenic | 40.0% | |
| TGCACATGTCTACGTTTAGA+AGG | + | chr4_4:59515654-59515673 | None:intergenic | 40.0% | |
| TCTAAACGTAGACATGTGCA+AGG | - | chr4_4:59515654-59515673 | Msa0691420:CDS | 40.0% | |
| !! | ACTAGGGATTTTCTTGGTGT+TGG | - | chr4_4:59515702-59515721 | Msa0691420:CDS | 40.0% |
| GATTGATGAAGGGTGACAAA+TGG | + | chr4_4:59515736-59515755 | None:intergenic | 40.0% | |
| TGTCACCCTTCATCAATCAA+CGG | - | chr4_4:59515738-59515757 | Msa0691420:CDS | 40.0% | |
| ! | TCCAACCGTTGATTGATGAA+GGG | + | chr4_4:59515746-59515765 | None:intergenic | 40.0% |
| ! | ATCCAACCGTTGATTGATGA+AGG | + | chr4_4:59515747-59515766 | None:intergenic | 40.0% |
| GACGTGGACATAATCTTCCA+TGG | - | chr4_4:59513758-59513777 | Msa0691420:CDS | 45.0% | |
| GATCTCTGCTTAAGCTTCCA+TGG | + | chr4_4:59513778-59513797 | None:intergenic | 45.0% | |
| !! | TGGTGGACACAAGTTTTCTC+TGG | + | chr4_4:59513835-59513854 | None:intergenic | 45.0% |
| TGTCCACCATGATCCTTCAA+GGG | - | chr4_4:59513846-59513865 | Msa0691420:CDS | 45.0% | |
| TTAGTCTCGGCAGTTGTTTG+CGG | - | chr4_4:59514139-59514158 | Msa0691420:CDS | 45.0% | |
| GGAAACATGAGTACGGCATA+AGG | + | chr4_4:59514523-59514542 | None:intergenic | 45.0% | |
| AACTGTCTCGTTCTCGAGAA+TGG | - | chr4_4:59514588-59514607 | Msa0691420:CDS | 45.0% | |
| !! | CCTTGCTGTTTCTTCTGCTA+AGG | + | chr4_4:59514854-59514873 | None:intergenic | 45.0% |
| CCTTAGCAGAAGAAACAGCA+AGG | - | chr4_4:59514851-59514870 | Msa0691420:intron | 45.0% | |
| ! | GTGAACAAGTTTGGTGGTAC+TGG | - | chr4_4:59515543-59515562 | Msa0691420:CDS | 45.0% |
| CATGTGCAAGGTGAAGAGAA+TGG | - | chr4_4:59515666-59515685 | Msa0691420:CDS | 45.0% | |
| ! | GGGCAAACTAGGGATTTTCT+TGG | - | chr4_4:59515696-59515715 | Msa0691420:CDS | 45.0% |
| ACCCTTCATCAATCAACGGT+TGG | - | chr4_4:59515742-59515761 | Msa0691420:CDS | 45.0% | |
| GACGTGGACATAATCTTCCA+TGG | - | chr4_4:59513758-59513777 | Msa0691420:CDS | 45.0% | |
| GATCTCTGCTTAAGCTTCCA+TGG | + | chr4_4:59513778-59513797 | None:intergenic | 45.0% | |
| !! | TGGTGGACACAAGTTTTCTC+TGG | + | chr4_4:59513835-59513854 | None:intergenic | 45.0% |
| TGTCCACCATGATCCTTCAA+GGG | - | chr4_4:59513846-59513865 | Msa0691420:CDS | 45.0% | |
| TTAGTCTCGGCAGTTGTTTG+CGG | - | chr4_4:59514139-59514158 | Msa0691420:CDS | 45.0% | |
| GGAAACATGAGTACGGCATA+AGG | + | chr4_4:59514523-59514542 | None:intergenic | 45.0% | |
| AACTGTCTCGTTCTCGAGAA+TGG | - | chr4_4:59514588-59514607 | Msa0691420:CDS | 45.0% | |
| !! | CCTTGCTGTTTCTTCTGCTA+AGG | + | chr4_4:59514854-59514873 | None:intergenic | 45.0% |
| CCTTAGCAGAAGAAACAGCA+AGG | - | chr4_4:59514851-59514870 | Msa0691420:intron | 45.0% | |
| ! | GTGAACAAGTTTGGTGGTAC+TGG | - | chr4_4:59515543-59515562 | Msa0691420:CDS | 45.0% |
| CATGTGCAAGGTGAAGAGAA+TGG | - | chr4_4:59515666-59515685 | Msa0691420:CDS | 45.0% | |
| ! | GGGCAAACTAGGGATTTTCT+TGG | - | chr4_4:59515696-59515715 | Msa0691420:CDS | 45.0% |
| ACCCTTCATCAATCAACGGT+TGG | - | chr4_4:59515742-59515761 | Msa0691420:CDS | 45.0% | |
| GTGTCCACCATGATCCTTCA+AGG | - | chr4_4:59513845-59513864 | Msa0691420:CDS | 50.0% | |
| CAAGTGCCCTTGAAGGATCA+TGG | + | chr4_4:59513855-59513874 | None:intergenic | 50.0% | |
| !! | CATGATCCTTCAAGGGCACT+TGG | - | chr4_4:59513853-59513872 | Msa0691420:CDS | 50.0% |
| AAGTCACCAAGTGCCCTTGA+AGG | + | chr4_4:59513862-59513881 | None:intergenic | 50.0% | |
| ! | AGGGCACTTGGTGACTTAAC+TGG | - | chr4_4:59513865-59513884 | Msa0691420:CDS | 50.0% |
| ! | GGGCACTTGGTGACTTAACT+GGG | - | chr4_4:59513866-59513885 | Msa0691420:CDS | 50.0% |
| TCGTTCCCGCATTTGAACTC+TGG | - | chr4_4:59514645-59514664 | Msa0691420:intron | 50.0% | |
| GTGCAAGGTGAAGAGAATGG+AGG | - | chr4_4:59515669-59515688 | Msa0691420:CDS | 50.0% | |
| CAAGGTGAAGAGAATGGAGG+AGG | - | chr4_4:59515672-59515691 | Msa0691420:CDS | 50.0% | |
| GTGAAGAGAATGGAGGAGGA+GGG | - | chr4_4:59515676-59515695 | Msa0691420:CDS | 50.0% | |
| GTGTCCACCATGATCCTTCA+AGG | - | chr4_4:59513845-59513864 | Msa0691420:CDS | 50.0% | |
| CAAGTGCCCTTGAAGGATCA+TGG | + | chr4_4:59513855-59513874 | None:intergenic | 50.0% | |
| !! | CATGATCCTTCAAGGGCACT+TGG | - | chr4_4:59513853-59513872 | Msa0691420:CDS | 50.0% |
| AAGTCACCAAGTGCCCTTGA+AGG | + | chr4_4:59513862-59513881 | None:intergenic | 50.0% | |
| ! | AGGGCACTTGGTGACTTAAC+TGG | - | chr4_4:59513865-59513884 | Msa0691420:CDS | 50.0% |
| ! | GGGCACTTGGTGACTTAACT+GGG | - | chr4_4:59513866-59513885 | Msa0691420:CDS | 50.0% |
| TCGTTCCCGCATTTGAACTC+TGG | - | chr4_4:59514645-59514664 | Msa0691420:intron | 50.0% | |
| GTGCAAGGTGAAGAGAATGG+AGG | - | chr4_4:59515669-59515688 | Msa0691420:CDS | 50.0% | |
| CAAGGTGAAGAGAATGGAGG+AGG | - | chr4_4:59515672-59515691 | Msa0691420:CDS | 50.0% | |
| GTGAAGAGAATGGAGGAGGA+GGG | - | chr4_4:59515676-59515695 | Msa0691420:CDS | 50.0% | |
| GTGCCCTTGAAGGATCATGG+TGG | + | chr4_4:59513852-59513871 | None:intergenic | 55.0% | |
| GGTGAAGAGAATGGAGGAGG+AGG | - | chr4_4:59515675-59515694 | Msa0691420:CDS | 55.0% | |
| ATGGAGGAGGAGGGCAAACT+AGG | - | chr4_4:59515685-59515704 | Msa0691420:CDS | 55.0% | |
| TGGAGGAGGAGGGCAAACTA+GGG | - | chr4_4:59515686-59515705 | Msa0691420:CDS | 55.0% | |
| GTGCCCTTGAAGGATCATGG+TGG | + | chr4_4:59513852-59513871 | None:intergenic | 55.0% | |
| GGTGAAGAGAATGGAGGAGG+AGG | - | chr4_4:59515675-59515694 | Msa0691420:CDS | 55.0% | |
| ATGGAGGAGGAGGGCAAACT+AGG | - | chr4_4:59515685-59515704 | Msa0691420:CDS | 55.0% | |
| TGGAGGAGGAGGGCAAACTA+GGG | - | chr4_4:59515686-59515705 | Msa0691420:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 59513685 | 59515770 | 59513685 | ID=Msa0691420;Name=Msa0691420 |
| chr4_4 | mRNA | 59513685 | 59515770 | 59513685 | ID=Msa0691420-mRNA-1;Parent=Msa0691420;Name=Msa0691420-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|1|0|1|1|1|2|0|437 |
| chr4_4 | exon | 59515415 | 59515770 | 59515415 | ID=Msa0691420-mRNA-1:exon:16201;Parent=Msa0691420-mRNA-1 |
| chr4_4 | exon | 59513685 | 59514642 | 59513685 | ID=Msa0691420-mRNA-1:exon:16200;Parent=Msa0691420-mRNA-1 |
| chr4_4 | CDS | 59515415 | 59515770 | 59515415 | ID=Msa0691420-mRNA-1:cds;Parent=Msa0691420-mRNA-1 |
| chr4_4 | CDS | 59513685 | 59514642 | 59513685 | ID=Msa0691420-mRNA-1:cds;Parent=Msa0691420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
