Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0608410 | XP_024638423.1 | 97.950 | 439 | 6 | 2 | 1 | 437 | 63 | 500 | 0.0 | 892 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0608410 | sp|Q9ZWA6|IDD3_ARATH | 50.837 | 478 | 158 | 13 | 1 | 437 | 65 | 506 | 1.04e-133 | 397 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0608410 | A0A396IAJ3 | 97.950 | 439 | 6 | 2 | 1 | 437 | 63 | 500 | 0.0 | 892 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0608410 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0608410 | Msa0648920 | 0.943787 | 6.396775e-103 | -8.615850e-47 |
| Msa0608410 | Msa0691420 | 0.937131 | 5.702046e-98 | -8.615850e-47 |
| Msa0608410 | Msa1355540 | 0.809663 | 1.693065e-50 | -8.615850e-47 |
| Msa0264710 | Msa0608410 | 0.813372 | 2.646751e-51 | -8.615850e-47 |
| Msa0302750 | Msa0608410 | 0.810030 | 1.411399e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0608410 | MtrunA17_Chr4g0040571 | 97.950 | 439 | 6 | 2 | 1 | 437 | 63 | 500 | 0.0 | 892 |
| Msa0608410 | MtrunA17_Chr1g0181381 | 49.863 | 365 | 115 | 9 | 1 | 345 | 62 | 378 | 3.31e-99 | 305 |
| Msa0608410 | MtrunA17_Chr8g0373541 | 81.250 | 160 | 25 | 1 | 1 | 155 | 57 | 216 | 3.10e-95 | 296 |
| Msa0608410 | MtrunA17_Chr7g0268961 | 48.189 | 359 | 107 | 9 | 1 | 350 | 46 | 334 | 1.82e-94 | 293 |
| Msa0608410 | MtrunA17_Chr4g0029521 | 42.366 | 465 | 158 | 16 | 1 | 423 | 62 | 458 | 2.28e-94 | 293 |
| Msa0608410 | MtrunA17_Chr1g0191991 | 50.437 | 343 | 94 | 10 | 1 | 343 | 87 | 353 | 3.82e-94 | 293 |
| Msa0608410 | MtrunA17_Chr2g0330171 | 87.857 | 140 | 17 | 0 | 1 | 140 | 70 | 209 | 1.28e-93 | 290 |
| Msa0608410 | MtrunA17_Chr7g0263941 | 64.762 | 210 | 62 | 2 | 1 | 210 | 58 | 255 | 1.70e-93 | 288 |
| Msa0608410 | MtrunA17_Chr8g0342421 | 88.571 | 140 | 16 | 0 | 1 | 140 | 86 | 225 | 3.96e-93 | 290 |
| Msa0608410 | MtrunA17_Chr1g0162971 | 79.747 | 158 | 27 | 1 | 1 | 153 | 65 | 222 | 5.61e-93 | 288 |
| Msa0608410 | MtrunA17_Chr1g0163001 | 88.489 | 139 | 16 | 0 | 1 | 139 | 67 | 205 | 2.33e-91 | 286 |
| Msa0608410 | MtrunA17_Chr1g0210821 | 46.114 | 386 | 162 | 9 | 1 | 360 | 68 | 433 | 5.62e-91 | 286 |
| Msa0608410 | MtrunA17_Chr1g0199101 | 86.957 | 138 | 18 | 0 | 1 | 138 | 71 | 208 | 8.34e-91 | 285 |
| Msa0608410 | MtrunA17_Chr1g0185121 | 85.315 | 143 | 20 | 1 | 1 | 142 | 64 | 206 | 1.64e-89 | 278 |
| Msa0608410 | MtrunA17_Chr1g0151351 | 80.667 | 150 | 28 | 1 | 1 | 149 | 65 | 214 | 3.54e-88 | 275 |
| Msa0608410 | MtrunA17_Chr2g0326381 | 68.208 | 173 | 45 | 2 | 1 | 172 | 56 | 219 | 1.50e-85 | 267 |
| Msa0608410 | MtrunA17_Chr2g0324991 | 92.373 | 118 | 9 | 0 | 1 | 118 | 16 | 133 | 6.30e-79 | 241 |
| Msa0608410 | MtrunA17_Chr3g0141431 | 76.119 | 134 | 31 | 1 | 1 | 133 | 46 | 179 | 1.35e-78 | 249 |
| Msa0608410 | MtrunA17_Chr6g0479921 | 62.879 | 132 | 48 | 1 | 1 | 131 | 53 | 184 | 8.28e-58 | 197 |
| Msa0608410 | MtrunA17_Chr8g0375521 | 42.683 | 246 | 120 | 7 | 1 | 227 | 51 | 294 | 3.71e-57 | 194 |
| Msa0608410 | MtrunA17_Chr2g0324981 | 50.725 | 276 | 80 | 17 | 155 | 423 | 5 | 231 | 1.19e-46 | 161 |
| Msa0608410 | MtrunA17_Chr1g0200421 | 34.177 | 158 | 88 | 4 | 1 | 142 | 246 | 403 | 4.25e-21 | 95.5 |
| Msa0608410 | MtrunA17_Chr2g0320341 | 37.594 | 133 | 69 | 4 | 8 | 126 | 246 | 378 | 1.23e-20 | 93.2 |
| Msa0608410 | MtrunA17_Chr3g0123941 | 36.496 | 137 | 79 | 3 | 1 | 129 | 132 | 268 | 5.94e-20 | 90.5 |
| Msa0608410 | MtrunA17_Chr5g0422571 | 33.974 | 156 | 92 | 4 | 1 | 146 | 109 | 263 | 9.82e-20 | 89.4 |
| Msa0608410 | MtrunA17_Chr8g0382121 | 36.496 | 137 | 76 | 5 | 1 | 126 | 120 | 256 | 1.31e-18 | 86.3 |
| Msa0608410 | MtrunA17_Chr7g0258011 | 31.098 | 164 | 95 | 5 | 1 | 147 | 184 | 346 | 1.68e-17 | 83.6 |
| Msa0608410 | MtrunA17_Chr4g0053341 | 34.783 | 138 | 80 | 4 | 1 | 129 | 82 | 218 | 3.48e-17 | 80.5 |
| Msa0608410 | MtrunA17_Chr1g0198651 | 34.228 | 149 | 85 | 5 | 1 | 137 | 110 | 257 | 4.50e-17 | 81.3 |
| Msa0608410 | MtrunA17_Chr8g0352011 | 33.742 | 163 | 87 | 6 | 1 | 146 | 174 | 332 | 5.39e-17 | 82.0 |
| Msa0608410 | MtrunA17_Chr1g0173841 | 30.539 | 167 | 98 | 5 | 1 | 150 | 223 | 388 | 2.15e-16 | 80.5 |
| Msa0608410 | MtrunA17_Chr2g0321291 | 35.075 | 134 | 77 | 4 | 5 | 129 | 145 | 277 | 1.29e-15 | 77.4 |
| Msa0608410 | MtrunA17_Chr2g0328921 | 32.609 | 138 | 83 | 4 | 1 | 129 | 146 | 282 | 2.15e-15 | 76.6 |
| Msa0608410 | MtrunA17_Chr4g0026521 | 33.582 | 134 | 79 | 4 | 5 | 129 | 130 | 262 | 2.99e-15 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0608410 | AT1G03840.2 | 50.837 | 478 | 158 | 13 | 1 | 437 | 63 | 504 | 6.77e-135 | 397 |
| Msa0608410 | AT1G03840.1 | 50.837 | 478 | 158 | 13 | 1 | 437 | 65 | 506 | 1.06e-134 | 397 |
| Msa0608410 | AT5G44160.1 | 49.893 | 469 | 140 | 15 | 1 | 437 | 61 | 466 | 2.80e-129 | 382 |
| Msa0608410 | AT5G44160.2 | 49.893 | 469 | 140 | 15 | 1 | 437 | 22 | 427 | 3.28e-129 | 380 |
| Msa0608410 | AT2G02080.6 | 43.478 | 437 | 195 | 9 | 1 | 423 | 1 | 399 | 3.85e-95 | 293 |
| Msa0608410 | AT2G02080.2 | 43.478 | 437 | 195 | 9 | 1 | 423 | 1 | 399 | 3.85e-95 | 293 |
| Msa0608410 | AT3G50700.1 | 88.489 | 139 | 16 | 0 | 1 | 139 | 58 | 196 | 2.12e-94 | 292 |
| Msa0608410 | AT5G66730.1 | 87.770 | 139 | 17 | 0 | 1 | 139 | 56 | 194 | 4.47e-93 | 290 |
| Msa0608410 | AT5G03150.1 | 70.984 | 193 | 42 | 5 | 1 | 189 | 77 | 259 | 3.18e-92 | 288 |
| Msa0608410 | AT3G13810.6 | 89.286 | 140 | 14 | 1 | 1 | 139 | 75 | 214 | 2.58e-90 | 283 |
| Msa0608410 | AT3G13810.4 | 89.286 | 140 | 14 | 1 | 1 | 139 | 94 | 233 | 2.89e-90 | 283 |
| Msa0608410 | AT3G13810.1 | 89.286 | 140 | 14 | 1 | 1 | 139 | 94 | 233 | 2.89e-90 | 283 |
| Msa0608410 | AT1G14580.1 | 84.892 | 139 | 21 | 0 | 1 | 139 | 77 | 215 | 3.15e-90 | 281 |
| Msa0608410 | AT1G14580.2 | 84.892 | 139 | 21 | 0 | 1 | 139 | 77 | 215 | 3.15e-90 | 281 |
| Msa0608410 | AT3G13810.5 | 89.286 | 140 | 14 | 1 | 1 | 139 | 89 | 228 | 3.33e-90 | 283 |
| Msa0608410 | AT3G13810.3 | 89.286 | 140 | 14 | 1 | 1 | 139 | 81 | 220 | 3.70e-90 | 282 |
| Msa0608410 | AT3G13810.2 | 89.286 | 140 | 14 | 1 | 1 | 139 | 95 | 234 | 4.91e-90 | 282 |
| Msa0608410 | AT1G14580.3 | 84.892 | 139 | 21 | 0 | 1 | 139 | 91 | 229 | 5.15e-90 | 281 |
| Msa0608410 | AT3G45260.2 | 76.687 | 163 | 33 | 2 | 1 | 158 | 63 | 225 | 6.15e-90 | 280 |
| Msa0608410 | AT3G45260.1 | 76.687 | 163 | 33 | 2 | 1 | 158 | 63 | 225 | 6.15e-90 | 280 |
| Msa0608410 | AT2G02070.2 | 85.612 | 139 | 20 | 0 | 1 | 139 | 76 | 214 | 7.45e-90 | 285 |
| Msa0608410 | AT2G02070.1 | 85.612 | 139 | 20 | 0 | 1 | 139 | 76 | 214 | 7.45e-90 | 285 |
| Msa0608410 | AT1G55110.3 | 86.525 | 141 | 18 | 1 | 1 | 140 | 87 | 227 | 2.07e-89 | 279 |
| Msa0608410 | AT1G55110.1 | 86.525 | 141 | 18 | 1 | 1 | 140 | 87 | 227 | 2.07e-89 | 279 |
| Msa0608410 | AT1G55110.2 | 86.525 | 141 | 18 | 1 | 1 | 140 | 87 | 227 | 2.07e-89 | 279 |
| Msa0608410 | AT4G02670.2 | 80.405 | 148 | 28 | 1 | 1 | 147 | 79 | 226 | 1.16e-86 | 270 |
| Msa0608410 | AT4G02670.1 | 80.405 | 148 | 28 | 1 | 1 | 147 | 77 | 224 | 1.23e-86 | 270 |
| Msa0608410 | AT1G25250.1 | 41.473 | 258 | 129 | 6 | 1 | 244 | 34 | 283 | 2.68e-58 | 195 |
| Msa0608410 | AT1G25250.3 | 41.473 | 258 | 129 | 6 | 1 | 244 | 57 | 306 | 3.09e-58 | 196 |
| Msa0608410 | AT2G01940.1 | 64.925 | 134 | 45 | 2 | 1 | 132 | 68 | 201 | 3.72e-58 | 197 |
| Msa0608410 | AT1G68130.1 | 64.394 | 132 | 45 | 2 | 1 | 130 | 65 | 196 | 1.23e-57 | 195 |
| Msa0608410 | AT2G01940.3 | 63.704 | 135 | 46 | 3 | 1 | 132 | 68 | 202 | 2.54e-54 | 187 |
| Msa0608410 | AT1G25250.2 | 39.831 | 236 | 120 | 6 | 23 | 244 | 1 | 228 | 9.69e-46 | 160 |
| Msa0608410 | AT2G01940.2 | 66.071 | 112 | 36 | 2 | 23 | 132 | 1 | 112 | 1.23e-45 | 162 |
| Msa0608410 | AT1G68130.2 | 65.455 | 110 | 36 | 2 | 23 | 130 | 1 | 110 | 1.64e-45 | 161 |
| Msa0608410 | AT5G22890.1 | 33.566 | 143 | 81 | 3 | 1 | 129 | 212 | 354 | 7.39e-21 | 94.0 |
| Msa0608410 | AT1G34370.3 | 31.383 | 188 | 102 | 5 | 1 | 161 | 29 | 216 | 8.65e-21 | 92.4 |
| Msa0608410 | AT1G34370.2 | 31.383 | 188 | 102 | 5 | 1 | 161 | 239 | 426 | 1.42e-20 | 94.4 |
| Msa0608410 | AT1G34370.1 | 31.383 | 188 | 102 | 5 | 1 | 161 | 239 | 426 | 1.42e-20 | 94.4 |
| Msa0608410 | AT1G13290.1 | 34.228 | 149 | 86 | 5 | 1 | 138 | 96 | 243 | 2.22e-17 | 82.8 |
| Msa0608410 | AT1G34790.1 | 35.256 | 156 | 84 | 5 | 6 | 145 | 145 | 299 | 4.96e-17 | 82.0 |
| Msa0608410 | AT3G20880.1 | 33.333 | 138 | 82 | 4 | 1 | 129 | 251 | 387 | 1.36e-16 | 81.6 |
| Msa0608410 | AT3G57670.1 | 29.697 | 165 | 98 | 5 | 1 | 148 | 212 | 375 | 3.08e-16 | 80.5 |
| Msa0608410 | AT1G08290.1 | 35.556 | 135 | 76 | 4 | 5 | 129 | 179 | 312 | 5.05e-16 | 79.3 |
| Msa0608410 | AT1G51220.1 | 31.159 | 138 | 85 | 4 | 1 | 129 | 173 | 309 | 1.28e-15 | 78.2 |
Find 84 sgRNAs with CRISPR-Local
Find 276 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAATAACTATCAGCTAAAT+TGG | 0.096349 | 4_2:-55503103 | Msa0608410:CDS |
| GTTTGAAAATTGAAGGAAAA+TGG | 0.140606 | 4_2:+55503342 | None:intergenic |
| TGGGTTGGCATATTGTTATT+AGG | 0.224791 | 4_2:+55503362 | None:intergenic |
| TAAACAACAGCTCATTATTA+AGG | 0.225341 | 4_2:-55503433 | Msa0608410:CDS |
| ACTTCATTCCTTGGAAGTTT+AGG | 0.253137 | 4_2:-55502840 | Msa0608410:CDS |
| AGGGCACTTGGTGACTTAAC+TGG | 0.259047 | 4_2:-55504461 | Msa0608410:CDS |
| AGCTGATAGTTATTAGAATA+TGG | 0.265620 | 4_2:+55503110 | None:intergenic |
| TGGTAATTACACCAACATAA+TGG | 0.296549 | 4_2:-55503402 | Msa0608410:CDS |
| AAGATGTTTGATGTGGTATT+TGG | 0.298081 | 4_2:+55502928 | None:intergenic |
| GGGTTGGCATATTGTTATTA+GGG | 0.301259 | 4_2:+55503363 | None:intergenic |
| TAGTACTAGTAATTAATTCT+TGG | 0.306930 | 4_2:+55503048 | None:intergenic |
| AAACATTAATGTTAATGTTA+AGG | 0.353425 | 4_2:-55503006 | Msa0608410:CDS |
| TGATGATCAGGAGTTGAAAT+TGG | 0.355744 | 4_2:+55503320 | None:intergenic |
| TGCACATGTCTACGTTTAGA+AGG | 0.356777 | 4_2:+55502675 | None:intergenic |
| GGTAATTACACCAACATAAT+GGG | 0.361813 | 4_2:-55503401 | Msa0608410:CDS |
| TCAAGTGATACTTCATTCCT+TGG | 0.409861 | 4_2:-55502849 | Msa0608410:CDS |
| TATACAAGGAAGAAATTTGT+TGG | 0.410040 | 4_2:+55502961 | None:intergenic |
| TAATAACTATCAGCTAAATT+GGG | 0.410339 | 4_2:-55503102 | Msa0608410:CDS |
| GAAATTGGTTTGAAAATTGA+AGG | 0.411531 | 4_2:+55503335 | None:intergenic |
| AAACAACAGCTCATTATTAA+GGG | 0.419725 | 4_2:-55503432 | Msa0608410:CDS |
| CCTTGCTGTTTCTTCTGCTA+AGG | 0.425077 | 4_2:+55503475 | None:intergenic |
| ATGGAGGAGGAGGGCAAACT+AGG | 0.425755 | 4_2:-55502641 | Msa0608410:CDS |
| TTACTAGAGGACTATCCCTT+TGG | 0.427116 | 4_2:-55503271 | Msa0608410:CDS |
| TTTGAAAATTGAAGGAAAAT+GGG | 0.430601 | 4_2:+55503343 | None:intergenic |
| GTGTCCACCATGATCCTTCA+AGG | 0.447211 | 4_2:-55504481 | Msa0608410:CDS |
| ACTAATGATGTGAACAAGTT+TGG | 0.457937 | 4_2:-55502792 | Msa0608410:CDS |
| GTTATGCTGTTCAGTCAGAT+TGG | 0.460465 | 4_2:-55504373 | Msa0608410:CDS |
| GTGAACAAGTTTGGTGGTAC+TGG | 0.464971 | 4_2:-55502783 | Msa0608410:CDS |
| TTCTGCTAAGGCATCACAAA+AGG | 0.465130 | 4_2:+55503487 | None:intergenic |
| GATCTCTGCTTAAGCTTCCA+TGG | 0.466510 | 4_2:+55504551 | None:intergenic |
| AAAATTGAAGGAAAATGGGT+TGG | 0.476598 | 4_2:+55503347 | None:intergenic |
| ATCCAACCGTTGATTGATGA+AGG | 0.480114 | 4_2:+55502582 | None:intergenic |
| TAGTCCTCTAGTAATTTGAT+TGG | 0.480674 | 4_2:+55503280 | None:intergenic |
| AAGTCACCAAGTGCCCTTGA+AGG | 0.485801 | 4_2:+55504467 | None:intergenic |
| CAAGGTGAAGAGAATGGAGG+AGG | 0.488030 | 4_2:-55502654 | Msa0608410:CDS |
| GGTGAAGAGAATGGAGGAGG+AGG | 0.498727 | 4_2:-55502651 | Msa0608410:CDS |
| AGTTCATTACTCATTAGTCT+TGG | 0.500073 | 4_2:-55502744 | Msa0608410:CDS |
| TTTGGTGGTACTGGTATGTA+TGG | 0.508130 | 4_2:-55502774 | Msa0608410:CDS |
| CAAACTAGAATTTCCATTGG+TGG | 0.513839 | 4_2:+55503202 | None:intergenic |
| CATGATCCTTCAAGGGCACT+TGG | 0.515364 | 4_2:-55504473 | Msa0608410:CDS |
| ACCCTTCATCAATCAACGGT+TGG | 0.521243 | 4_2:-55502584 | Msa0608410:CDS |
| ACTAGAATTTCCATTGGTGG+TGG | 0.523314 | 4_2:+55503205 | None:intergenic |
| GGGCACTTGGTGACTTAACT+GGG | 0.533578 | 4_2:-55504460 | Msa0608410:CDS |
| GAAAGCATGGTGAAAAGAAG+TGG | 0.534661 | 4_2:-55504418 | Msa0608410:CDS |
| TCATCAAGAGAAATTATGTA+TGG | 0.535107 | 4_2:-55503152 | Msa0608410:CDS |
| AGATGTTGTTCCCATTATGT+TGG | 0.540728 | 4_2:+55503391 | None:intergenic |
| CAAGTGCCCTTGAAGGATCA+TGG | 0.541455 | 4_2:+55504474 | None:intergenic |
| TGGAGGAGGAGGGCAAACTA+GGG | 0.541684 | 4_2:-55502640 | Msa0608410:CDS |
| GATTGATGAAGGGTGACAAA+TGG | 0.546230 | 4_2:+55502593 | None:intergenic |
| ACAATGATAACCACCACCAA+TGG | 0.547801 | 4_2:-55503215 | Msa0608410:CDS |
| TAGTTATTAGAATATGGTGG+AGG | 0.547810 | 4_2:+55503116 | None:intergenic |
| GTGGTTATCATTGTTTCATG+AGG | 0.548154 | 4_2:+55503224 | None:intergenic |
| ACTCATTAGTCTTGGCAATG+AGG | 0.548463 | 4_2:-55502736 | Msa0608410:CDS |
| ATGCAAACTAGAATTTCCAT+TGG | 0.550334 | 4_2:+55503199 | None:intergenic |
| ATTTCAAACCTAAACTTCCA+AGG | 0.550495 | 4_2:+55502832 | None:intergenic |
| TCAAGAGAAATTATGTATGG+TGG | 0.557028 | 4_2:-55503149 | Msa0608410:CDS |
| TTGTGTGAAACATGTGGGAA+AGG | 0.560203 | 4_2:-55504623 | Msa0608410:CDS |
| TTGGTGTTGTGAGCTATACA+AGG | 0.564753 | 4_2:+55502947 | None:intergenic |
| GACGTGGACATAATCTTCCA+TGG | 0.576178 | 4_2:-55504568 | Msa0608410:CDS |
| TCATTATTAAGGGGTAACAT+TGG | 0.591412 | 4_2:-55503422 | Msa0608410:CDS |
| GCACATGTCTACGTTTAGAA+GGG | 0.592522 | 4_2:+55502676 | None:intergenic |
| TGTCACCCTTCATCAATCAA+CGG | 0.597702 | 4_2:-55502588 | Msa0608410:CDS |
| CATGTGCAAGGTGAAGAGAA+TGG | 0.598271 | 4_2:-55502660 | Msa0608410:CDS |
| AGTTATTAGAATATGGTGGA+GGG | 0.602415 | 4_2:+55503117 | None:intergenic |
| GTGAAGAGAATGGAGGAGGA+GGG | 0.608002 | 4_2:-55502650 | Msa0608410:CDS |
| TCAACCAATCAAATTACTAG+AGG | 0.616270 | 4_2:-55503284 | Msa0608410:CDS |
| AAGGAATGAAGTATCACTTG+AGG | 0.616790 | 4_2:+55502851 | None:intergenic |
| TTAACATTAATGTTTCCTAG+TGG | 0.620526 | 4_2:+55503014 | None:intergenic |
| AACAACAGCTCATTATTAAG+GGG | 0.621367 | 4_2:-55503431 | Msa0608410:CDS |
| AATGATGTGAACAAGTTTGG+TGG | 0.623059 | 4_2:-55502789 | Msa0608410:CDS |
| TCCAACCGTTGATTGATGAA+GGG | 0.630023 | 4_2:+55502583 | None:intergenic |
| TGTCCACCATGATCCTTCAA+GGG | 0.631692 | 4_2:-55504480 | Msa0608410:CDS |
| TGATAGTTATTAGAATATGG+TGG | 0.647387 | 4_2:+55503113 | None:intergenic |
| CCTTAGCAGAAGAAACAGCA+AGG | 0.647661 | 4_2:-55503475 | Msa0608410:CDS |
| TTTGCTGAAGATGTTTGATG+TGG | 0.648760 | 4_2:+55502921 | None:intergenic |
| ACTACAACTTCACTTCCACT+AGG | 0.649669 | 4_2:-55503029 | Msa0608410:CDS |
| GATTCTTGTGTGAAACATGT+GGG | 0.660378 | 4_2:-55504628 | Msa0608410:CDS |
| AGATTCTTGTGTGAAACATG+TGG | 0.668573 | 4_2:-55504629 | Msa0608410:CDS |
| AGAGAATACAAATGTGACTG+TGG | 0.675625 | 4_2:-55504323 | Msa0608410:CDS |
| TCTAAACGTAGACATGTGCA+AGG | 0.685474 | 4_2:-55502672 | Msa0608410:CDS |
| CTTAGCAGAAGAAACAGCAA+GGG | 0.690135 | 4_2:-55503474 | Msa0608410:CDS |
| AATCTACAGCTACATAGACG+TGG | 0.700320 | 4_2:-55504584 | Msa0608410:CDS |
| GTGCAAGGTGAAGAGAATGG+AGG | 0.708411 | 4_2:-55502657 | Msa0608410:CDS |
| GTGCCCTTGAAGGATCATGG+TGG | 0.739339 | 4_2:+55504477 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATCAGATATATAATTTTTTT+TGG | + | chr4_2:55503073-55503092 | None:intergenic | 10.0% |
| !! | AAAATTATATATCTGATATA+AGG | - | chr4_2:55503076-55503095 | Msa0608410:CDS | 10.0% |
| !! | GTTTATATATAAATATTAGA+AGG | + | chr4_2:55503620-55503639 | None:intergenic | 10.0% |
| !!! | TTAATATTTGTGAATATTTT+TGG | - | chr4_2:55503675-55503694 | Msa0608410:intron | 10.0% |
| !!! | ATCAGATATATAATTTTTTT+TGG | + | chr4_2:55503073-55503092 | None:intergenic | 10.0% |
| !! | AAAATTATATATCTGATATA+AGG | - | chr4_2:55503076-55503095 | Msa0608410:CDS | 10.0% |
| !! | GTTTATATATAAATATTAGA+AGG | + | chr4_2:55503620-55503639 | None:intergenic | 10.0% |
| !!! | TTAATATTTGTGAATATTTT+TGG | - | chr4_2:55503675-55503694 | Msa0608410:intron | 10.0% |
| !! | TTAGTTTAAACAAATGATTA+AGG | - | chr4_2:55503189-55503208 | Msa0608410:CDS | 15.0% |
| !! | AAACATTAATGTTAATGTTA+AGG | - | chr4_2:55504213-55504232 | Msa0608410:intron | 15.0% |
| !! | TTAGTTTAAACAAATGATTA+AGG | - | chr4_2:55503189-55503208 | Msa0608410:CDS | 15.0% |
| !! | AAACATTAATGTTAATGTTA+AGG | - | chr4_2:55504213-55504232 | Msa0608410:intron | 15.0% |
| !!! | ATGTTTTTTTTTTGCCTATT+TGG | - | chr4_2:55503134-55503153 | Msa0608410:CDS | 20.0% |
| !! | TTTGAAAATTGAAGGAAAAT+GGG | + | chr4_2:55503879-55503898 | None:intergenic | 20.0% |
| !! | TAATAACTATCAGCTAAATT+GGG | - | chr4_2:55504117-55504136 | Msa0608410:intron | 20.0% |
| !! | TAGTACTAGTAATTAATTCT+TGG | + | chr4_2:55504174-55504193 | None:intergenic | 20.0% |
| !!! | ATGTTTTTTTTTTGCCTATT+TGG | - | chr4_2:55503134-55503153 | Msa0608410:CDS | 20.0% |
| !! | TTTGAAAATTGAAGGAAAAT+GGG | + | chr4_2:55503879-55503898 | None:intergenic | 20.0% |
| !! | TAATAACTATCAGCTAAATT+GGG | - | chr4_2:55504117-55504136 | Msa0608410:intron | 20.0% |
| !! | TAGTACTAGTAATTAATTCT+TGG | + | chr4_2:55504174-55504193 | None:intergenic | 20.0% |
| ! | TAATCGGTATATCTGATATA+AGG | - | chr4_2:55502990-55503009 | Msa0608410:CDS | 25.0% |
| ! | ATAAGGATCAAGTTTAAAAG+TGG | - | chr4_2:55503093-55503112 | Msa0608410:CDS | 25.0% |
| ! | TATTCTCAAAAAAGCCAAAT+AGG | + | chr4_2:55503151-55503170 | None:intergenic | 25.0% |
| ! | TTGAGAATAAAAAGTGAATG+AGG | - | chr4_2:55503162-55503181 | Msa0608410:CDS | 25.0% |
| ! | AATTATATACATAGTGAGTG+AGG | + | chr4_2:55503315-55503334 | None:intergenic | 25.0% |
| !!! | TTTATTTTCACACTAGTTTG+AGG | - | chr4_2:55503350-55503369 | Msa0608410:CDS | 25.0% |
| ! | GTTAACCAACTACTATATAT+AGG | - | chr4_2:55503375-55503394 | Msa0608410:CDS | 25.0% |
| !! | AACTCATTAACCAAATCTTT+TGG | - | chr4_2:55503589-55503608 | Msa0608410:intron | 25.0% |
| ! | TAAACAACAGCTCATTATTA+AGG | - | chr4_2:55503786-55503805 | Msa0608410:intron | 25.0% |
| ! | AAACAACAGCTCATTATTAA+GGG | - | chr4_2:55503787-55503806 | Msa0608410:intron | 25.0% |
| ! | GTTTGAAAATTGAAGGAAAA+TGG | + | chr4_2:55503880-55503899 | None:intergenic | 25.0% |
| !!! | GAAATTGGTTTGAAAATTGA+AGG | + | chr4_2:55503887-55503906 | None:intergenic | 25.0% |
| !!! | AGAATTTTGATTCATCCAAA+GGG | + | chr4_2:55503966-55503985 | None:intergenic | 25.0% |
| ! | TCATCAAGAGAAATTATGTA+TGG | - | chr4_2:55504067-55504086 | Msa0608410:intron | 25.0% |
| ! | TGATAGTTATTAGAATATGG+TGG | + | chr4_2:55504109-55504128 | None:intergenic | 25.0% |
| ! | AGCTGATAGTTATTAGAATA+TGG | + | chr4_2:55504112-55504131 | None:intergenic | 25.0% |
| ! | CTAATAACTATCAGCTAAAT+TGG | - | chr4_2:55504116-55504135 | Msa0608410:intron | 25.0% |
| ! | TTAACATTAATGTTTCCTAG+TGG | + | chr4_2:55504208-55504227 | None:intergenic | 25.0% |
| ! | TATACAAGGAAGAAATTTGT+TGG | + | chr4_2:55504261-55504280 | None:intergenic | 25.0% |
| ! | TAATCGGTATATCTGATATA+AGG | - | chr4_2:55502990-55503009 | Msa0608410:CDS | 25.0% |
| ! | ATAAGGATCAAGTTTAAAAG+TGG | - | chr4_2:55503093-55503112 | Msa0608410:CDS | 25.0% |
| ! | TATTCTCAAAAAAGCCAAAT+AGG | + | chr4_2:55503151-55503170 | None:intergenic | 25.0% |
| ! | TTGAGAATAAAAAGTGAATG+AGG | - | chr4_2:55503162-55503181 | Msa0608410:CDS | 25.0% |
| ! | AATTATATACATAGTGAGTG+AGG | + | chr4_2:55503315-55503334 | None:intergenic | 25.0% |
| !!! | TTTATTTTCACACTAGTTTG+AGG | - | chr4_2:55503350-55503369 | Msa0608410:CDS | 25.0% |
| ! | GTTAACCAACTACTATATAT+AGG | - | chr4_2:55503375-55503394 | Msa0608410:CDS | 25.0% |
| !! | AACTCATTAACCAAATCTTT+TGG | - | chr4_2:55503589-55503608 | Msa0608410:intron | 25.0% |
| ! | TAAACAACAGCTCATTATTA+AGG | - | chr4_2:55503786-55503805 | Msa0608410:intron | 25.0% |
| ! | AAACAACAGCTCATTATTAA+GGG | - | chr4_2:55503787-55503806 | Msa0608410:intron | 25.0% |
| ! | GTTTGAAAATTGAAGGAAAA+TGG | + | chr4_2:55503880-55503899 | None:intergenic | 25.0% |
| !!! | GAAATTGGTTTGAAAATTGA+AGG | + | chr4_2:55503887-55503906 | None:intergenic | 25.0% |
| !!! | AGAATTTTGATTCATCCAAA+GGG | + | chr4_2:55503966-55503985 | None:intergenic | 25.0% |
| ! | TCATCAAGAGAAATTATGTA+TGG | - | chr4_2:55504067-55504086 | Msa0608410:intron | 25.0% |
| ! | TGATAGTTATTAGAATATGG+TGG | + | chr4_2:55504109-55504128 | None:intergenic | 25.0% |
| ! | AGCTGATAGTTATTAGAATA+TGG | + | chr4_2:55504112-55504131 | None:intergenic | 25.0% |
| ! | CTAATAACTATCAGCTAAAT+TGG | - | chr4_2:55504116-55504135 | Msa0608410:intron | 25.0% |
| ! | TTAACATTAATGTTTCCTAG+TGG | + | chr4_2:55504208-55504227 | None:intergenic | 25.0% |
| ! | TATACAAGGAAGAAATTTGT+TGG | + | chr4_2:55504261-55504280 | None:intergenic | 25.0% |
| TGATCAGAATAACATAGAGA+TGG | + | chr4_2:55502962-55502981 | None:intergenic | 30.0% | |
| GATCAAGTTTAAAAGTGGTT+AGG | - | chr4_2:55503098-55503117 | Msa0608410:CDS | 30.0% | |
| ACAAGCCTATATATAGTAGT+TGG | + | chr4_2:55503383-55503402 | None:intergenic | 30.0% | |
| AGCTAGACAAAAGTCAAAAT+GGG | + | chr4_2:55503446-55503465 | None:intergenic | 30.0% | |
| TAATGAGTTTCAGTTAAGGA+CGG | + | chr4_2:55503578-55503597 | None:intergenic | 30.0% | |
| TGGTTAATGAGTTTCAGTTA+AGG | + | chr4_2:55503582-55503601 | None:intergenic | 30.0% | |
| AACAACAGCTCATTATTAAG+GGG | - | chr4_2:55503788-55503807 | Msa0608410:intron | 30.0% | |
| TCATTATTAAGGGGTAACAT+TGG | - | chr4_2:55503797-55503816 | Msa0608410:intron | 30.0% | |
| TGGTAATTACACCAACATAA+TGG | - | chr4_2:55503817-55503836 | Msa0608410:intron | 30.0% | |
| GGTAATTACACCAACATAAT+GGG | - | chr4_2:55503818-55503837 | Msa0608410:intron | 30.0% | |
| AAAATTGAAGGAAAATGGGT+TGG | + | chr4_2:55503875-55503894 | None:intergenic | 30.0% | |
| TCAACCAATCAAATTACTAG+AGG | - | chr4_2:55503935-55503954 | Msa0608410:intron | 30.0% | |
| TAGTCCTCTAGTAATTTGAT+TGG | + | chr4_2:55503942-55503961 | None:intergenic | 30.0% | |
| !!! | GAGAATTTTGATTCATCCAA+AGG | + | chr4_2:55503967-55503986 | None:intergenic | 30.0% |
| ATGCAAACTAGAATTTCCAT+TGG | + | chr4_2:55504023-55504042 | None:intergenic | 30.0% | |
| TCAAGAGAAATTATGTATGG+TGG | - | chr4_2:55504070-55504089 | Msa0608410:intron | 30.0% | |
| ! | AGTTATTAGAATATGGTGGA+GGG | + | chr4_2:55504105-55504124 | None:intergenic | 30.0% |
| TAGTTATTAGAATATGGTGG+AGG | + | chr4_2:55504106-55504125 | None:intergenic | 30.0% | |
| ! | TATCAGCTAAATTGGGTTTT+TGG | - | chr4_2:55504124-55504143 | Msa0608410:intron | 30.0% |
| AAGATGTTTGATGTGGTATT+TGG | + | chr4_2:55504294-55504313 | None:intergenic | 30.0% | |
| TTACAAAAAGCTGCTCAAAT+TGG | - | chr4_2:55504340-55504359 | Msa0608410:CDS | 30.0% | |
| ATTTCAAACCTAAACTTCCA+AGG | + | chr4_2:55504390-55504409 | None:intergenic | 30.0% | |
| ACTAATGATGTGAACAAGTT+TGG | - | chr4_2:55504427-55504446 | Msa0608410:CDS | 30.0% | |
| ! | AGTTCATTACTCATTAGTCT+TGG | - | chr4_2:55504475-55504494 | Msa0608410:CDS | 30.0% |
| TGATCAGAATAACATAGAGA+TGG | + | chr4_2:55502962-55502981 | None:intergenic | 30.0% | |
| GATCAAGTTTAAAAGTGGTT+AGG | - | chr4_2:55503098-55503117 | Msa0608410:CDS | 30.0% | |
| ACAAGCCTATATATAGTAGT+TGG | + | chr4_2:55503383-55503402 | None:intergenic | 30.0% | |
| AGCTAGACAAAAGTCAAAAT+GGG | + | chr4_2:55503446-55503465 | None:intergenic | 30.0% | |
| TAATGAGTTTCAGTTAAGGA+CGG | + | chr4_2:55503578-55503597 | None:intergenic | 30.0% | |
| TGGTTAATGAGTTTCAGTTA+AGG | + | chr4_2:55503582-55503601 | None:intergenic | 30.0% | |
| AACAACAGCTCATTATTAAG+GGG | - | chr4_2:55503788-55503807 | Msa0608410:intron | 30.0% | |
| TCATTATTAAGGGGTAACAT+TGG | - | chr4_2:55503797-55503816 | Msa0608410:intron | 30.0% | |
| TGGTAATTACACCAACATAA+TGG | - | chr4_2:55503817-55503836 | Msa0608410:intron | 30.0% | |
| GGTAATTACACCAACATAAT+GGG | - | chr4_2:55503818-55503837 | Msa0608410:intron | 30.0% | |
| AAAATTGAAGGAAAATGGGT+TGG | + | chr4_2:55503875-55503894 | None:intergenic | 30.0% | |
| TCAACCAATCAAATTACTAG+AGG | - | chr4_2:55503935-55503954 | Msa0608410:intron | 30.0% | |
| TAGTCCTCTAGTAATTTGAT+TGG | + | chr4_2:55503942-55503961 | None:intergenic | 30.0% | |
| !!! | GAGAATTTTGATTCATCCAA+AGG | + | chr4_2:55503967-55503986 | None:intergenic | 30.0% |
| ATGCAAACTAGAATTTCCAT+TGG | + | chr4_2:55504023-55504042 | None:intergenic | 30.0% | |
| TCAAGAGAAATTATGTATGG+TGG | - | chr4_2:55504070-55504089 | Msa0608410:intron | 30.0% | |
| ! | AGTTATTAGAATATGGTGGA+GGG | + | chr4_2:55504105-55504124 | None:intergenic | 30.0% |
| TAGTTATTAGAATATGGTGG+AGG | + | chr4_2:55504106-55504125 | None:intergenic | 30.0% | |
| ! | TATCAGCTAAATTGGGTTTT+TGG | - | chr4_2:55504124-55504143 | Msa0608410:intron | 30.0% |
| AAGATGTTTGATGTGGTATT+TGG | + | chr4_2:55504294-55504313 | None:intergenic | 30.0% | |
| TTACAAAAAGCTGCTCAAAT+TGG | - | chr4_2:55504340-55504359 | Msa0608410:CDS | 30.0% | |
| ATTTCAAACCTAAACTTCCA+AGG | + | chr4_2:55504390-55504409 | None:intergenic | 30.0% | |
| ACTAATGATGTGAACAAGTT+TGG | - | chr4_2:55504427-55504446 | Msa0608410:CDS | 30.0% | |
| ! | AGTTCATTACTCATTAGTCT+TGG | - | chr4_2:55504475-55504494 | Msa0608410:CDS | 30.0% |
| AGATTCTTGTGTGAAACATG+TGG | - | chr4_2:55502590-55502609 | Msa0608410:CDS | 35.0% | |
| GATTCTTGTGTGAAACATGT+GGG | - | chr4_2:55502591-55502610 | Msa0608410:CDS | 35.0% | |
| ! | AAGCACTTTTGTAGAAAGCA+TGG | - | chr4_2:55502788-55502807 | Msa0608410:CDS | 35.0% |
| AAAGCTCACTCAAAAACATG+TGG | - | chr4_2:55502869-55502888 | Msa0608410:CDS | 35.0% | |
| AGAGAATACAAATGTGACTG+TGG | - | chr4_2:55502896-55502915 | Msa0608410:CDS | 35.0% | |
| ! | ACTGTGGAACTATCTTTTCA+AGG | - | chr4_2:55502912-55502931 | Msa0608410:CDS | 35.0% |
| TAACATAGAGATGGATGGAT+AGG | + | chr4_2:55502953-55502972 | None:intergenic | 35.0% | |
| CAGAATAACATAGAGATGGA+TGG | + | chr4_2:55502958-55502977 | None:intergenic | 35.0% | |
| TCTGATCACATCGTTGTAAT+CGG | - | chr4_2:55502974-55502993 | Msa0608410:CDS | 35.0% | |
| TTAGGGCAAAAACTGCAAAA+AGG | + | chr4_2:55503255-55503274 | None:intergenic | 35.0% | |
| !! | CCATGAACTTTTGTCGTTTA+GGG | + | chr4_2:55503272-55503291 | None:intergenic | 35.0% |
| !! | ACCATGAACTTTTGTCGTTT+AGG | + | chr4_2:55503273-55503292 | None:intergenic | 35.0% |
| AACGACAAAAGTTCATGGTT+TGG | - | chr4_2:55503274-55503293 | Msa0608410:CDS | 35.0% | |
| AAAGTCAAAATGGGAGTAAC+CGG | + | chr4_2:55503437-55503456 | None:intergenic | 35.0% | |
| GAGCTAGACAAAAGTCAAAA+TGG | + | chr4_2:55503447-55503466 | None:intergenic | 35.0% | |
| GAAGGAACAACCAAAAGATT+TGG | + | chr4_2:55503602-55503621 | None:intergenic | 35.0% | |
| !!! | GTGAATATTTTTGGTTGAGC+AGG | - | chr4_2:55503684-55503703 | Msa0608410:intron | 35.0% |
| AGATGTTGTTCCCATTATGT+TGG | + | chr4_2:55503831-55503850 | None:intergenic | 35.0% | |
| ! | GGGTTGGCATATTGTTATTA+GGG | + | chr4_2:55503859-55503878 | None:intergenic | 35.0% |
| !! | TGGGTTGGCATATTGTTATT+AGG | + | chr4_2:55503860-55503879 | None:intergenic | 35.0% |
| TGATGATCAGGAGTTGAAAT+TGG | + | chr4_2:55503902-55503921 | None:intergenic | 35.0% | |
| ! | TCATGATGATGATGATGATC+AGG | + | chr4_2:55503914-55503933 | None:intergenic | 35.0% |
| GTGGTTATCATTGTTTCATG+AGG | + | chr4_2:55503998-55504017 | None:intergenic | 35.0% | |
| CAAACTAGAATTTCCATTGG+TGG | + | chr4_2:55504020-55504039 | None:intergenic | 35.0% | |
| TTTGCTGAAGATGTTTGATG+TGG | + | chr4_2:55504301-55504320 | None:intergenic | 35.0% | |
| ! | AAGGAATGAAGTATCACTTG+AGG | + | chr4_2:55504371-55504390 | None:intergenic | 35.0% |
| TCAAGTGATACTTCATTCCT+TGG | - | chr4_2:55504370-55504389 | Msa0608410:CDS | 35.0% | |
| ACTTCATTCCTTGGAAGTTT+AGG | - | chr4_2:55504379-55504398 | Msa0608410:CDS | 35.0% | |
| AATGATGTGAACAAGTTTGG+TGG | - | chr4_2:55504430-55504449 | Msa0608410:CDS | 35.0% | |
| AGATTCTTGTGTGAAACATG+TGG | - | chr4_2:55502590-55502609 | Msa0608410:CDS | 35.0% | |
| GATTCTTGTGTGAAACATGT+GGG | - | chr4_2:55502591-55502610 | Msa0608410:CDS | 35.0% | |
| ! | AAGCACTTTTGTAGAAAGCA+TGG | - | chr4_2:55502788-55502807 | Msa0608410:CDS | 35.0% |
| AAAGCTCACTCAAAAACATG+TGG | - | chr4_2:55502869-55502888 | Msa0608410:CDS | 35.0% | |
| AGAGAATACAAATGTGACTG+TGG | - | chr4_2:55502896-55502915 | Msa0608410:CDS | 35.0% | |
| ! | ACTGTGGAACTATCTTTTCA+AGG | - | chr4_2:55502912-55502931 | Msa0608410:CDS | 35.0% |
| TAACATAGAGATGGATGGAT+AGG | + | chr4_2:55502953-55502972 | None:intergenic | 35.0% | |
| CAGAATAACATAGAGATGGA+TGG | + | chr4_2:55502958-55502977 | None:intergenic | 35.0% | |
| TCTGATCACATCGTTGTAAT+CGG | - | chr4_2:55502974-55502993 | Msa0608410:CDS | 35.0% | |
| TTAGGGCAAAAACTGCAAAA+AGG | + | chr4_2:55503255-55503274 | None:intergenic | 35.0% | |
| !! | CCATGAACTTTTGTCGTTTA+GGG | + | chr4_2:55503272-55503291 | None:intergenic | 35.0% |
| !! | ACCATGAACTTTTGTCGTTT+AGG | + | chr4_2:55503273-55503292 | None:intergenic | 35.0% |
| AACGACAAAAGTTCATGGTT+TGG | - | chr4_2:55503274-55503293 | Msa0608410:CDS | 35.0% | |
| AAAGTCAAAATGGGAGTAAC+CGG | + | chr4_2:55503437-55503456 | None:intergenic | 35.0% | |
| GAGCTAGACAAAAGTCAAAA+TGG | + | chr4_2:55503447-55503466 | None:intergenic | 35.0% | |
| GAAGGAACAACCAAAAGATT+TGG | + | chr4_2:55503602-55503621 | None:intergenic | 35.0% | |
| !!! | GTGAATATTTTTGGTTGAGC+AGG | - | chr4_2:55503684-55503703 | Msa0608410:intron | 35.0% |
| AGATGTTGTTCCCATTATGT+TGG | + | chr4_2:55503831-55503850 | None:intergenic | 35.0% | |
| ! | GGGTTGGCATATTGTTATTA+GGG | + | chr4_2:55503859-55503878 | None:intergenic | 35.0% |
| !! | TGGGTTGGCATATTGTTATT+AGG | + | chr4_2:55503860-55503879 | None:intergenic | 35.0% |
| TGATGATCAGGAGTTGAAAT+TGG | + | chr4_2:55503902-55503921 | None:intergenic | 35.0% | |
| ! | TCATGATGATGATGATGATC+AGG | + | chr4_2:55503914-55503933 | None:intergenic | 35.0% |
| GTGGTTATCATTGTTTCATG+AGG | + | chr4_2:55503998-55504017 | None:intergenic | 35.0% | |
| CAAACTAGAATTTCCATTGG+TGG | + | chr4_2:55504020-55504039 | None:intergenic | 35.0% | |
| TTTGCTGAAGATGTTTGATG+TGG | + | chr4_2:55504301-55504320 | None:intergenic | 35.0% | |
| ! | AAGGAATGAAGTATCACTTG+AGG | + | chr4_2:55504371-55504390 | None:intergenic | 35.0% |
| TCAAGTGATACTTCATTCCT+TGG | - | chr4_2:55504370-55504389 | Msa0608410:CDS | 35.0% | |
| ACTTCATTCCTTGGAAGTTT+AGG | - | chr4_2:55504379-55504398 | Msa0608410:CDS | 35.0% | |
| AATGATGTGAACAAGTTTGG+TGG | - | chr4_2:55504430-55504449 | Msa0608410:CDS | 35.0% | |
| TTGTGTGAAACATGTGGGAA+AGG | - | chr4_2:55502596-55502615 | Msa0608410:CDS | 40.0% | |
| AATCTACAGCTACATAGACG+TGG | - | chr4_2:55502635-55502654 | Msa0608410:CDS | 40.0% | |
| ! | GAAAGCATGGTGAAAAGAAG+TGG | - | chr4_2:55502801-55502820 | Msa0608410:CDS | 40.0% |
| GTTATGCTGTTCAGTCAGAT+TGG | - | chr4_2:55502846-55502865 | Msa0608410:CDS | 40.0% | |
| TAGAGATGGATGGATAGGTT+AGG | + | chr4_2:55502948-55502967 | None:intergenic | 40.0% | |
| ! | GTTGCTCGAGAAATTAGTCT+CGG | - | chr4_2:55503019-55503038 | Msa0608410:CDS | 40.0% |
| CCCTAAACGACAAAAGTTCA+TGG | - | chr4_2:55503269-55503288 | Msa0608410:CDS | 40.0% | |
| TTATGCCGTACTCATGTTTC+CGG | - | chr4_2:55503415-55503434 | Msa0608410:CDS | 40.0% | |
| AGTAACCGGAAACATGAGTA+CGG | + | chr4_2:55503423-55503442 | None:intergenic | 40.0% | |
| TCATTTCCGCATTTGAACTC+TGG | - | chr4_2:55503538-55503557 | Msa0608410:intron | 40.0% | |
| GGATAACCAGAGTTCAAATG+CGG | + | chr4_2:55503547-55503566 | None:intergenic | 40.0% | |
| !! | CAGTTAAGGACGGATTGTTT+GGG | + | chr4_2:55503568-55503587 | None:intergenic | 40.0% |
| !! | TCAGTTAAGGACGGATTGTT+TGG | + | chr4_2:55503569-55503588 | None:intergenic | 40.0% |
| ! | TTCTGCTAAGGCATCACAAA+AGG | + | chr4_2:55503735-55503754 | None:intergenic | 40.0% |
| CTTAGCAGAAGAAACAGCAA+GGG | - | chr4_2:55503745-55503764 | Msa0608410:intron | 40.0% | |
| TTACTAGAGGACTATCCCTT+TGG | - | chr4_2:55503948-55503967 | Msa0608410:intron | 40.0% | |
| ACAATGATAACCACCACCAA+TGG | - | chr4_2:55504004-55504023 | Msa0608410:intron | 40.0% | |
| ACTAGAATTTCCATTGGTGG+TGG | + | chr4_2:55504017-55504036 | None:intergenic | 40.0% | |
| ACTACAACTTCACTTCCACT+AGG | - | chr4_2:55504190-55504209 | Msa0608410:intron | 40.0% | |
| !! | TTGGTGTTGTGAGCTATACA+AGG | + | chr4_2:55504275-55504294 | None:intergenic | 40.0% |
| !! | TTTGGTGGTACTGGTATGTA+TGG | - | chr4_2:55504445-55504464 | Msa0608410:CDS | 40.0% |
| !! | ACTCATTAGTCTTGGCAATG+AGG | - | chr4_2:55504483-55504502 | Msa0608410:CDS | 40.0% |
| GCACATGTCTACGTTTAGAA+GGG | + | chr4_2:55504546-55504565 | None:intergenic | 40.0% | |
| TGCACATGTCTACGTTTAGA+AGG | + | chr4_2:55504547-55504566 | None:intergenic | 40.0% | |
| TCTAAACGTAGACATGTGCA+AGG | - | chr4_2:55504547-55504566 | Msa0608410:CDS | 40.0% | |
| !! | ACTAGGGATTTTCTTGGTGT+TGG | - | chr4_2:55504595-55504614 | Msa0608410:CDS | 40.0% |
| GATTGATGAAGGGTGACAAA+TGG | + | chr4_2:55504629-55504648 | None:intergenic | 40.0% | |
| TGTCACCCTTCATCAATCAA+CGG | - | chr4_2:55504631-55504650 | Msa0608410:CDS | 40.0% | |
| ! | TCCAACCGTTGATTGATGAA+GGG | + | chr4_2:55504639-55504658 | None:intergenic | 40.0% |
| ! | ATCCAACCGTTGATTGATGA+AGG | + | chr4_2:55504640-55504659 | None:intergenic | 40.0% |
| TTGTGTGAAACATGTGGGAA+AGG | - | chr4_2:55502596-55502615 | Msa0608410:CDS | 40.0% | |
| AATCTACAGCTACATAGACG+TGG | - | chr4_2:55502635-55502654 | Msa0608410:CDS | 40.0% | |
| ! | GAAAGCATGGTGAAAAGAAG+TGG | - | chr4_2:55502801-55502820 | Msa0608410:CDS | 40.0% |
| GTTATGCTGTTCAGTCAGAT+TGG | - | chr4_2:55502846-55502865 | Msa0608410:CDS | 40.0% | |
| TAGAGATGGATGGATAGGTT+AGG | + | chr4_2:55502948-55502967 | None:intergenic | 40.0% | |
| ! | GTTGCTCGAGAAATTAGTCT+CGG | - | chr4_2:55503019-55503038 | Msa0608410:CDS | 40.0% |
| CCCTAAACGACAAAAGTTCA+TGG | - | chr4_2:55503269-55503288 | Msa0608410:CDS | 40.0% | |
| TTATGCCGTACTCATGTTTC+CGG | - | chr4_2:55503415-55503434 | Msa0608410:CDS | 40.0% | |
| AGTAACCGGAAACATGAGTA+CGG | + | chr4_2:55503423-55503442 | None:intergenic | 40.0% | |
| TCATTTCCGCATTTGAACTC+TGG | - | chr4_2:55503538-55503557 | Msa0608410:intron | 40.0% | |
| GGATAACCAGAGTTCAAATG+CGG | + | chr4_2:55503547-55503566 | None:intergenic | 40.0% | |
| !! | CAGTTAAGGACGGATTGTTT+GGG | + | chr4_2:55503568-55503587 | None:intergenic | 40.0% |
| !! | TCAGTTAAGGACGGATTGTT+TGG | + | chr4_2:55503569-55503588 | None:intergenic | 40.0% |
| ! | TTCTGCTAAGGCATCACAAA+AGG | + | chr4_2:55503735-55503754 | None:intergenic | 40.0% |
| CTTAGCAGAAGAAACAGCAA+GGG | - | chr4_2:55503745-55503764 | Msa0608410:intron | 40.0% | |
| TTACTAGAGGACTATCCCTT+TGG | - | chr4_2:55503948-55503967 | Msa0608410:intron | 40.0% | |
| ACAATGATAACCACCACCAA+TGG | - | chr4_2:55504004-55504023 | Msa0608410:intron | 40.0% | |
| ACTAGAATTTCCATTGGTGG+TGG | + | chr4_2:55504017-55504036 | None:intergenic | 40.0% | |
| ACTACAACTTCACTTCCACT+AGG | - | chr4_2:55504190-55504209 | Msa0608410:intron | 40.0% | |
| !! | TTGGTGTTGTGAGCTATACA+AGG | + | chr4_2:55504275-55504294 | None:intergenic | 40.0% |
| !! | TTTGGTGGTACTGGTATGTA+TGG | - | chr4_2:55504445-55504464 | Msa0608410:CDS | 40.0% |
| !! | ACTCATTAGTCTTGGCAATG+AGG | - | chr4_2:55504483-55504502 | Msa0608410:CDS | 40.0% |
| GCACATGTCTACGTTTAGAA+GGG | + | chr4_2:55504546-55504565 | None:intergenic | 40.0% | |
| TGCACATGTCTACGTTTAGA+AGG | + | chr4_2:55504547-55504566 | None:intergenic | 40.0% | |
| TCTAAACGTAGACATGTGCA+AGG | - | chr4_2:55504547-55504566 | Msa0608410:CDS | 40.0% | |
| !! | ACTAGGGATTTTCTTGGTGT+TGG | - | chr4_2:55504595-55504614 | Msa0608410:CDS | 40.0% |
| GATTGATGAAGGGTGACAAA+TGG | + | chr4_2:55504629-55504648 | None:intergenic | 40.0% | |
| TGTCACCCTTCATCAATCAA+CGG | - | chr4_2:55504631-55504650 | Msa0608410:CDS | 40.0% | |
| ! | TCCAACCGTTGATTGATGAA+GGG | + | chr4_2:55504639-55504658 | None:intergenic | 40.0% |
| ! | ATCCAACCGTTGATTGATGA+AGG | + | chr4_2:55504640-55504659 | None:intergenic | 40.0% |
| GACGTGGACATAATCTTCCA+TGG | - | chr4_2:55502651-55502670 | Msa0608410:CDS | 45.0% | |
| GATCTCTGCTTAAGCTTCCA+TGG | + | chr4_2:55502671-55502690 | None:intergenic | 45.0% | |
| !! | TGGTGGACACAAGTTTTCTC+TGG | + | chr4_2:55502728-55502747 | None:intergenic | 45.0% |
| TGTCCACCATGATCCTTCAA+GGG | - | chr4_2:55502739-55502758 | Msa0608410:CDS | 45.0% | |
| TTAGTCTCGGCAGTTGTTTG+CGG | - | chr4_2:55503032-55503051 | Msa0608410:CDS | 45.0% | |
| GGAAACATGAGTACGGCATA+AGG | + | chr4_2:55503416-55503435 | None:intergenic | 45.0% | |
| AACTGTCTCGTTCTCGAGAA+TGG | - | chr4_2:55503481-55503500 | Msa0608410:CDS | 45.0% | |
| !! | CCTTGCTGTTTCTTCTGCTA+AGG | + | chr4_2:55503747-55503766 | None:intergenic | 45.0% |
| CCTTAGCAGAAGAAACAGCA+AGG | - | chr4_2:55503744-55503763 | Msa0608410:intron | 45.0% | |
| ! | GTGAACAAGTTTGGTGGTAC+TGG | - | chr4_2:55504436-55504455 | Msa0608410:CDS | 45.0% |
| CATGTGCAAGGTGAAGAGAA+TGG | - | chr4_2:55504559-55504578 | Msa0608410:CDS | 45.0% | |
| ! | GGGCAAACTAGGGATTTTCT+TGG | - | chr4_2:55504589-55504608 | Msa0608410:CDS | 45.0% |
| ACCCTTCATCAATCAACGGT+TGG | - | chr4_2:55504635-55504654 | Msa0608410:CDS | 45.0% | |
| GACGTGGACATAATCTTCCA+TGG | - | chr4_2:55502651-55502670 | Msa0608410:CDS | 45.0% | |
| GATCTCTGCTTAAGCTTCCA+TGG | + | chr4_2:55502671-55502690 | None:intergenic | 45.0% | |
| !! | TGGTGGACACAAGTTTTCTC+TGG | + | chr4_2:55502728-55502747 | None:intergenic | 45.0% |
| TGTCCACCATGATCCTTCAA+GGG | - | chr4_2:55502739-55502758 | Msa0608410:CDS | 45.0% | |
| TTAGTCTCGGCAGTTGTTTG+CGG | - | chr4_2:55503032-55503051 | Msa0608410:CDS | 45.0% | |
| GGAAACATGAGTACGGCATA+AGG | + | chr4_2:55503416-55503435 | None:intergenic | 45.0% | |
| AACTGTCTCGTTCTCGAGAA+TGG | - | chr4_2:55503481-55503500 | Msa0608410:CDS | 45.0% | |
| !! | CCTTGCTGTTTCTTCTGCTA+AGG | + | chr4_2:55503747-55503766 | None:intergenic | 45.0% |
| CCTTAGCAGAAGAAACAGCA+AGG | - | chr4_2:55503744-55503763 | Msa0608410:intron | 45.0% | |
| ! | GTGAACAAGTTTGGTGGTAC+TGG | - | chr4_2:55504436-55504455 | Msa0608410:CDS | 45.0% |
| CATGTGCAAGGTGAAGAGAA+TGG | - | chr4_2:55504559-55504578 | Msa0608410:CDS | 45.0% | |
| ! | GGGCAAACTAGGGATTTTCT+TGG | - | chr4_2:55504589-55504608 | Msa0608410:CDS | 45.0% |
| ACCCTTCATCAATCAACGGT+TGG | - | chr4_2:55504635-55504654 | Msa0608410:CDS | 45.0% | |
| GTGTCCACCATGATCCTTCA+AGG | - | chr4_2:55502738-55502757 | Msa0608410:CDS | 50.0% | |
| CAAGTGCCCTTGAAGGATCA+TGG | + | chr4_2:55502748-55502767 | None:intergenic | 50.0% | |
| !! | CATGATCCTTCAAGGGCACT+TGG | - | chr4_2:55502746-55502765 | Msa0608410:CDS | 50.0% |
| AAGTCACCAAGTGCCCTTGA+AGG | + | chr4_2:55502755-55502774 | None:intergenic | 50.0% | |
| ! | AGGGCACTTGGTGACTTAAC+TGG | - | chr4_2:55502758-55502777 | Msa0608410:CDS | 50.0% |
| ! | GGGCACTTGGTGACTTAACT+GGG | - | chr4_2:55502759-55502778 | Msa0608410:CDS | 50.0% |
| GTGCAAGGTGAAGAGAATGG+AGG | - | chr4_2:55504562-55504581 | Msa0608410:CDS | 50.0% | |
| CAAGGTGAAGAGAATGGAGG+AGG | - | chr4_2:55504565-55504584 | Msa0608410:CDS | 50.0% | |
| GTGAAGAGAATGGAGGAGGA+GGG | - | chr4_2:55504569-55504588 | Msa0608410:CDS | 50.0% | |
| GTGTCCACCATGATCCTTCA+AGG | - | chr4_2:55502738-55502757 | Msa0608410:CDS | 50.0% | |
| CAAGTGCCCTTGAAGGATCA+TGG | + | chr4_2:55502748-55502767 | None:intergenic | 50.0% | |
| !! | CATGATCCTTCAAGGGCACT+TGG | - | chr4_2:55502746-55502765 | Msa0608410:CDS | 50.0% |
| AAGTCACCAAGTGCCCTTGA+AGG | + | chr4_2:55502755-55502774 | None:intergenic | 50.0% | |
| ! | AGGGCACTTGGTGACTTAAC+TGG | - | chr4_2:55502758-55502777 | Msa0608410:CDS | 50.0% |
| ! | GGGCACTTGGTGACTTAACT+GGG | - | chr4_2:55502759-55502778 | Msa0608410:CDS | 50.0% |
| GTGCAAGGTGAAGAGAATGG+AGG | - | chr4_2:55504562-55504581 | Msa0608410:CDS | 50.0% | |
| CAAGGTGAAGAGAATGGAGG+AGG | - | chr4_2:55504565-55504584 | Msa0608410:CDS | 50.0% | |
| GTGAAGAGAATGGAGGAGGA+GGG | - | chr4_2:55504569-55504588 | Msa0608410:CDS | 50.0% | |
| GTGCCCTTGAAGGATCATGG+TGG | + | chr4_2:55502745-55502764 | None:intergenic | 55.0% | |
| GGTGAAGAGAATGGAGGAGG+AGG | - | chr4_2:55504568-55504587 | Msa0608410:CDS | 55.0% | |
| ATGGAGGAGGAGGGCAAACT+AGG | - | chr4_2:55504578-55504597 | Msa0608410:CDS | 55.0% | |
| TGGAGGAGGAGGGCAAACTA+GGG | - | chr4_2:55504579-55504598 | Msa0608410:CDS | 55.0% | |
| GTGCCCTTGAAGGATCATGG+TGG | + | chr4_2:55502745-55502764 | None:intergenic | 55.0% | |
| GGTGAAGAGAATGGAGGAGG+AGG | - | chr4_2:55504568-55504587 | Msa0608410:CDS | 55.0% | |
| ATGGAGGAGGAGGGCAAACT+AGG | - | chr4_2:55504578-55504597 | Msa0608410:CDS | 55.0% | |
| TGGAGGAGGAGGGCAAACTA+GGG | - | chr4_2:55504579-55504598 | Msa0608410:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 55502578 | 55504663 | 55502578 | ID=Msa0608410;Name=Msa0608410 |
| chr4_2 | mRNA | 55502578 | 55504663 | 55502578 | ID=Msa0608410-mRNA-1;Parent=Msa0608410;Name=Msa0608410-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|1|0|1|1|1|2|0|437 |
| chr4_2 | exon | 55504308 | 55504663 | 55504308 | ID=Msa0608410-mRNA-1:exon:14154;Parent=Msa0608410-mRNA-1 |
| chr4_2 | exon | 55502578 | 55503535 | 55502578 | ID=Msa0608410-mRNA-1:exon:14153;Parent=Msa0608410-mRNA-1 |
| chr4_2 | CDS | 55504308 | 55504663 | 55504308 | ID=Msa0608410-mRNA-1:cds;Parent=Msa0608410-mRNA-1 |
| chr4_2 | CDS | 55502578 | 55503535 | 55502578 | ID=Msa0608410-mRNA-1:cds;Parent=Msa0608410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
