Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0930820 | XP_003630941.1 | 98.704 | 540 | 5 | 1 | 1 | 540 | 1 | 538 | 0.0 | 1094 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0930820 | sp|Q9ZU96|Y2168_ARATH | 69.131 | 541 | 157 | 5 | 1 | 540 | 1 | 532 | 0.0 | 741 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0038020 | Msa0930820 | 0.810490 | 1.123505e-50 | -8.615850e-47 |
Msa0043730 | Msa0930820 | 0.823163 | 1.605518e-53 | -8.615850e-47 |
Msa0055070 | Msa0930820 | 0.803288 | 3.744642e-49 | -8.615850e-47 |
Msa0072170 | Msa0930820 | 0.812590 | 3.926695e-51 | -8.615850e-47 |
Msa0085720 | Msa0930820 | 0.864354 | 1.292012e-64 | -8.615850e-47 |
Msa0090030 | Msa0930820 | 0.817114 | 3.899743e-52 | -8.615850e-47 |
Msa0092440 | Msa0930820 | 0.828667 | 7.913796e-55 | -8.615850e-47 |
Msa0096940 | Msa0930820 | -0.809018 | 2.327499e-50 | -8.615850e-47 |
Msa0101020 | Msa0930820 | 0.809216 | 2.111209e-50 | -8.615850e-47 |
Msa0120540 | Msa0930820 | 0.805976 | 1.029326e-49 | -8.615850e-47 |
Msa0609970 | Msa0930820 | 0.805222 | 1.481157e-49 | -8.615850e-47 |
Msa0612680 | Msa0930820 | -0.815423 | 9.316782e-52 | -8.615850e-47 |
Msa0621240 | Msa0930820 | 0.851206 | 1.031765e-60 | -8.615850e-47 |
Msa0621650 | Msa0930820 | 0.801122 | 1.045160e-48 | -8.615850e-47 |
Msa0624230 | Msa0930820 | 0.805595 | 1.237226e-49 | -8.615850e-47 |
Msa0653320 | Msa0930820 | -0.838811 | 2.303683e-57 | -8.615850e-47 |
Msa0679550 | Msa0930820 | 0.812058 | 5.132346e-51 | -8.615850e-47 |
Msa0691870 | Msa0930820 | 0.800249 | 1.574879e-48 | -8.615850e-47 |
Msa0703730 | Msa0930820 | 0.835680 | 1.457447e-56 | -8.615850e-47 |
Msa0715150 | Msa0930820 | 0.811598 | 6.460826e-51 | -8.615850e-47 |
Msa0724950 | Msa0930820 | 0.835020 | 2.139505e-56 | -8.615850e-47 |
Msa0773310 | Msa0930820 | 0.804872 | 1.753552e-49 | -8.615850e-47 |
Msa0780280 | Msa0930820 | 0.805780 | 1.131319e-49 | -8.615850e-47 |
Msa0805420 | Msa0930820 | 0.800088 | 1.697937e-48 | -8.615850e-47 |
Msa0810760 | Msa0930820 | 0.822358 | 2.471996e-53 | -8.615850e-47 |
Msa0820530 | Msa0930820 | -0.808979 | 2.372725e-50 | -8.615850e-47 |
Msa0821800 | Msa0930820 | 0.807389 | 5.177692e-50 | -8.615850e-47 |
Msa0830210 | Msa0930820 | 0.823587 | 1.278564e-53 | -8.615850e-47 |
Msa0124550 | Msa0930820 | 0.832253 | 1.050491e-55 | -8.615850e-47 |
Msa0130520 | Msa0930820 | 0.819719 | 1.002067e-52 | -8.615850e-47 |
Msa0140510 | Msa0930820 | -0.812602 | 3.904345e-51 | -8.615850e-47 |
Msa0144970 | Msa0930820 | -0.806124 | 9.578214e-50 | -8.615850e-47 |
Msa0145110 | Msa0930820 | 0.804450 | 2.147326e-49 | -8.615850e-47 |
Msa0169820 | Msa0930820 | 0.804950 | 1.688570e-49 | -8.615850e-47 |
Msa0175050 | Msa0930820 | 0.871344 | 7.339844e-67 | -8.615850e-47 |
Msa0187060 | Msa0930820 | 0.806091 | 9.731427e-50 | -8.615850e-47 |
Msa0194720 | Msa0930820 | 0.868870 | 4.732537e-66 | -8.615850e-47 |
Msa0202930 | Msa0930820 | 0.806108 | 9.654520e-50 | -8.615850e-47 |
Msa0212750 | Msa0930820 | -0.825114 | 5.591087e-54 | -8.615850e-47 |
Msa0236740 | Msa0930820 | 0.829719 | 4.398412e-55 | -8.615850e-47 |
Msa0365490 | Msa0930820 | 0.815888 | 7.337274e-52 | -8.615850e-47 |
Msa0388030 | Msa0930820 | -0.822638 | 2.128049e-53 | -8.615850e-47 |
Msa0471790 | Msa0930820 | 0.811238 | 7.737338e-51 | -8.615850e-47 |
Msa0241740 | Msa0930820 | 0.846913 | 1.610895e-59 | -8.615850e-47 |
Msa0266210 | Msa0930820 | 0.803641 | 3.163782e-49 | -8.615850e-47 |
Msa0266240 | Msa0930820 | 0.815938 | 7.152115e-52 | -8.615850e-47 |
Msa0269520 | Msa0930820 | 0.830870 | 2.301768e-55 | -8.615850e-47 |
Msa0287670 | Msa0930820 | 0.811566 | 6.567042e-51 | -8.615850e-47 |
Msa0328380 | Msa0930820 | 0.800633 | 1.315163e-48 | -8.615850e-47 |
Msa0505060 | Msa0930820 | 0.838320 | 3.084640e-57 | -8.615850e-47 |
Msa0517490 | Msa0930820 | 0.808313 | 3.292461e-50 | -8.615850e-47 |
Msa0557950 | Msa0930820 | -0.828175 | 1.040487e-54 | -8.615850e-47 |
Msa0573040 | Msa0930820 | 0.814794 | 1.284726e-51 | -8.615850e-47 |
Msa0585620 | Msa0930820 | -0.831121 | 1.997785e-55 | -8.615850e-47 |
Msa0585650 | Msa0930820 | -0.823733 | 1.181734e-53 | -8.615850e-47 |
Msa0845070 | Msa0930820 | 0.830886 | 2.280585e-55 | -8.615850e-47 |
Msa0854920 | Msa0930820 | 0.804442 | 2.156432e-49 | -8.615850e-47 |
Msa0861830 | Msa0930820 | 0.826776 | 2.253680e-54 | -8.615850e-47 |
Msa0876860 | Msa0930820 | -0.815451 | 9.185470e-52 | -8.615850e-47 |
Msa0930820 | Msa0941540 | 0.805601 | 1.233690e-49 | -8.615850e-47 |
Msa0930820 | Msa0944730 | 0.827685 | 1.364916e-54 | -8.615850e-47 |
Msa0930820 | Msa0945100 | 0.810828 | 9.493234e-51 | -8.615850e-47 |
Msa0930820 | Msa0959010 | 0.807840 | 4.153354e-50 | -8.615850e-47 |
Msa0930820 | Msa0982590 | 0.814278 | 1.671357e-51 | -8.615850e-47 |
Msa0930820 | Msa0994740 | 0.802727 | 4.889589e-49 | -8.615850e-47 |
Msa0930820 | Msa1021510 | 0.816837 | 4.500519e-52 | -8.615850e-47 |
Msa0930820 | Msa1036910 | 0.805060 | 1.601786e-49 | -8.615850e-47 |
Msa0930820 | Msa1038210 | -0.806959 | 6.383992e-50 | -8.615850e-47 |
Msa0930820 | Msa1045450 | 0.839762 | 1.305080e-57 | -8.615850e-47 |
Msa0930820 | Msa1048700 | 0.830041 | 3.671814e-55 | -8.615850e-47 |
Msa0930820 | Msa1096550 | 0.842342 | 2.741145e-58 | -8.615850e-47 |
Msa0930820 | Msa1105500 | 0.806991 | 6.286831e-50 | -8.615850e-47 |
Msa0930820 | Msa1109820 | 0.828293 | 9.743125e-55 | -8.615850e-47 |
Msa0930820 | Msa1133570 | 0.818738 | 1.676142e-52 | -8.615850e-47 |
Msa0930820 | Msa1135880 | 0.816161 | 6.379423e-52 | -8.615850e-47 |
Msa0930820 | Msa1152950 | 0.815594 | 8.533778e-52 | -8.615850e-47 |
Msa0930820 | Msa1174310 | 0.884009 | 2.763943e-71 | -8.615850e-47 |
Msa0930820 | Msa1177780 | 0.810466 | 1.136953e-50 | -8.615850e-47 |
Msa0930820 | Msa1182640 | 0.806372 | 8.492224e-50 | -8.615850e-47 |
Msa0930820 | Msa1183770 | 0.839033 | 2.018615e-57 | -8.615850e-47 |
Msa0930820 | Msa1222280 | 0.813697 | 2.244479e-51 | -8.615850e-47 |
Msa0930820 | Msa1235020 | 0.839019 | 2.035362e-57 | -8.615850e-47 |
Msa0930820 | Msa1235400 | 0.851806 | 6.981408e-61 | -8.615850e-47 |
Msa0930820 | Msa1272320 | 0.808377 | 3.190639e-50 | -8.615850e-47 |
Msa0930820 | Msa1276510 | 0.812196 | 4.787796e-51 | -8.615850e-47 |
Msa0930820 | Msa1306360 | 0.800769 | 1.233755e-48 | -8.615850e-47 |
Msa0930820 | Msa1307740 | 0.801044 | 1.084018e-48 | -8.615850e-47 |
Msa0930820 | Msa1309010 | 0.813016 | 3.168197e-51 | -8.615850e-47 |
Msa0930820 | Msa1314770 | 0.869372 | 3.254057e-66 | -8.615850e-47 |
Msa0930820 | Msa1350690 | 0.811610 | 6.423706e-51 | -8.615850e-47 |
Msa0930820 | Msa1363700 | 0.828006 | 1.142567e-54 | -8.615850e-47 |
Msa0930820 | Msa1366300 | 0.814092 | 1.837496e-51 | -8.615850e-47 |
Msa0930820 | Msa1373350 | 0.811313 | 7.451616e-51 | -8.615850e-47 |
Msa0930820 | Msa1376160 | -0.804595 | 2.003057e-49 | -8.615850e-47 |
Msa0930820 | Msa1396940 | 0.814674 | 1.366144e-51 | -8.615850e-47 |
Msa0930820 | Msa1400070 | 0.806029 | 1.003291e-49 | -8.615850e-47 |
Msa0930820 | Msa1404720 | 0.815520 | 8.865139e-52 | -8.615850e-47 |
Msa0930820 | Msa1407650 | 0.943623 | 8.615656e-103 | -8.615850e-47 |
Msa0930820 | Msa1417810 | -0.818192 | 2.227971e-52 | -8.615850e-47 |
Msa0930820 | Msa1422840 | 0.830103 | 3.545976e-55 | -8.615850e-47 |
Msa0930820 | Msa1433220 | 0.844980 | 5.402023e-59 | -8.615850e-47 |
Msa0930820 | Msa1435400 | 0.814733 | 1.325820e-51 | -8.615850e-47 |
Msa0930820 | Msa1445220 | 0.808706 | 2.714557e-50 | -8.615850e-47 |
Msa0930820 | Msa1445400 | -0.821286 | 4.378137e-53 | -8.615850e-47 |
Msa0930820 | Msa1449350 | -0.825282 | 5.103830e-54 | -8.615850e-47 |
Msa0930820 | Msa1458030 | 0.843381 | 1.450722e-58 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0930820 | MtrunA17_Chr8g0391711 | 98.704 | 540 | 5 | 1 | 1 | 540 | 1 | 538 | 0.0 | 1094 |
Msa0930820 | MtrunA17_Chr1g0161231 | 76.710 | 541 | 115 | 4 | 1 | 540 | 1 | 531 | 0.0 | 857 |
Msa0930820 | MtrunA17_Chr4g0030551 | 46.341 | 451 | 228 | 5 | 56 | 496 | 61 | 507 | 2.30e-130 | 390 |
Msa0930820 | MtrunA17_Chr2g0327711 | 40.782 | 537 | 285 | 7 | 14 | 540 | 31 | 544 | 5.22e-129 | 387 |
Msa0930820 | MtrunA17_Chr7g0276681 | 44.286 | 490 | 253 | 8 | 56 | 540 | 72 | 546 | 2.89e-127 | 383 |
Msa0930820 | MtrunA17_Chr1g0212971 | 41.667 | 528 | 288 | 6 | 18 | 540 | 81 | 593 | 1.71e-125 | 380 |
Msa0930820 | MtrunA17_Chr7g0263421 | 43.636 | 495 | 259 | 5 | 54 | 540 | 38 | 520 | 7.59e-125 | 375 |
Msa0930820 | MtrunA17_Chr7g0263471 | 38.258 | 528 | 300 | 7 | 18 | 540 | 76 | 582 | 3.44e-103 | 322 |
Msa0930820 | MtrunA17_Chr2g0331191 | 24.943 | 441 | 256 | 9 | 100 | 470 | 138 | 573 | 9.28e-35 | 138 |
Msa0930820 | MtrunA17_Chr2g0331201 | 23.570 | 437 | 261 | 7 | 100 | 468 | 138 | 569 | 2.32e-24 | 107 |
Msa0930820 | MtrunA17_Chr2g0331201 | 21.591 | 352 | 197 | 9 | 41 | 318 | 10 | 356 | 3.55e-12 | 68.9 |
Msa0930820 | MtrunA17_Chr5g0439351 | 23.789 | 454 | 293 | 10 | 49 | 469 | 252 | 685 | 1.55e-15 | 79.7 |
Msa0930820 | MtrunA17_Chr8g0367671 | 23.362 | 351 | 213 | 7 | 103 | 422 | 47 | 372 | 2.13e-15 | 78.6 |
Msa0930820 | MtrunA17_Chr8g0361991 | 24.585 | 301 | 182 | 6 | 103 | 382 | 46 | 322 | 2.73e-15 | 78.2 |
Msa0930820 | MtrunA17_Chr3g0122941 | 25.874 | 286 | 167 | 8 | 14 | 276 | 109 | 372 | 7.50e-14 | 74.3 |
Msa0930820 | MtrunA17_Chr8g0370361 | 24.138 | 290 | 183 | 5 | 103 | 380 | 46 | 310 | 8.05e-14 | 73.6 |
Msa0930820 | MtrunA17_Chr8g0353311 | 25.086 | 291 | 182 | 8 | 103 | 380 | 49 | 316 | 1.48e-13 | 72.8 |
Msa0930820 | MtrunA17_Chr1g0178581 | 26.351 | 296 | 169 | 9 | 103 | 380 | 47 | 311 | 3.23e-13 | 71.6 |
Msa0930820 | MtrunA17_Chr7g0221531 | 27.907 | 215 | 133 | 5 | 103 | 304 | 44 | 249 | 5.82e-13 | 70.9 |
Msa0930820 | MtrunA17_Chr8g0369921 | 25.234 | 214 | 140 | 3 | 103 | 304 | 45 | 250 | 3.64e-12 | 68.6 |
Msa0930820 | MtrunA17_Chr5g0439361 | 23.958 | 384 | 247 | 12 | 115 | 469 | 1 | 368 | 6.30e-12 | 67.8 |
Msa0930820 | MtrunA17_Chr7g0233331 | 21.552 | 348 | 217 | 8 | 103 | 420 | 44 | 365 | 8.48e-12 | 67.0 |
Msa0930820 | MtrunA17_Chr7g0262731 | 26.291 | 213 | 145 | 5 | 103 | 304 | 44 | 255 | 5.46e-11 | 65.1 |
Msa0930820 | MtrunA17_Chr3g0083331 | 22.000 | 300 | 188 | 5 | 103 | 380 | 45 | 320 | 6.55e-11 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0930820 | AT2G01680.1 | 69.131 | 541 | 157 | 5 | 1 | 540 | 1 | 532 | 0.0 | 741 |
Msa0930820 | AT1G07710.2 | 44.841 | 504 | 260 | 8 | 47 | 540 | 48 | 543 | 3.17e-128 | 385 |
Msa0930820 | AT1G07710.1 | 44.841 | 504 | 260 | 8 | 47 | 540 | 48 | 543 | 3.17e-128 | 385 |
Msa0930820 | AT2G31820.1 | 42.752 | 545 | 279 | 9 | 2 | 540 | 145 | 662 | 1.38e-124 | 380 |
Msa0930820 | AT5G60070.1 | 42.801 | 507 | 258 | 8 | 21 | 515 | 43 | 529 | 3.31e-121 | 367 |
Msa0930820 | AT1G05640.1 | 44.848 | 495 | 256 | 8 | 54 | 540 | 142 | 627 | 3.96e-120 | 367 |
Msa0930820 | AT3G12360.2 | 40.190 | 525 | 296 | 6 | 18 | 540 | 70 | 578 | 2.89e-116 | 356 |
Msa0930820 | AT3G12360.1 | 40.190 | 525 | 296 | 6 | 18 | 540 | 82 | 590 | 4.79e-116 | 356 |
Msa0930820 | AT5G02620.4 | 42.324 | 482 | 249 | 5 | 24 | 492 | 27 | 492 | 2.84e-115 | 352 |
Msa0930820 | AT5G02620.1 | 42.324 | 482 | 249 | 5 | 24 | 492 | 27 | 492 | 2.84e-115 | 352 |
Msa0930820 | AT5G02620.3 | 42.324 | 482 | 249 | 5 | 24 | 492 | 27 | 492 | 2.84e-115 | 352 |
Msa0930820 | AT3G09550.2 | 40.000 | 525 | 300 | 8 | 18 | 540 | 103 | 614 | 7.70e-112 | 345 |
Msa0930820 | AT3G09550.1 | 40.000 | 525 | 300 | 8 | 18 | 540 | 96 | 607 | 1.11e-111 | 345 |
Msa0930820 | AT3G09550.3 | 40.000 | 525 | 300 | 8 | 18 | 540 | 96 | 607 | 1.11e-111 | 345 |
Msa0930820 | AT5G02620.5 | 40.594 | 505 | 248 | 6 | 24 | 492 | 27 | 515 | 1.48e-110 | 340 |
Msa0930820 | AT5G02620.2 | 40.594 | 505 | 248 | 6 | 24 | 492 | 27 | 515 | 1.48e-110 | 340 |
Msa0930820 | AT5G54710.1 | 27.105 | 487 | 311 | 12 | 57 | 506 | 94 | 573 | 6.64e-39 | 150 |
Msa0930820 | AT5G54710.2 | 27.105 | 487 | 311 | 12 | 57 | 506 | 139 | 618 | 1.20e-38 | 150 |
Msa0930820 | AT1G34050.1 | 26.020 | 392 | 264 | 8 | 112 | 494 | 162 | 536 | 1.01e-33 | 135 |
Msa0930820 | AT2G24600.3 | 21.861 | 462 | 311 | 9 | 56 | 485 | 96 | 539 | 7.25e-31 | 127 |
Msa0930820 | AT2G24600.4 | 21.861 | 462 | 311 | 9 | 56 | 485 | 96 | 539 | 7.25e-31 | 127 |
Msa0930820 | AT1G10340.1 | 22.326 | 430 | 290 | 10 | 56 | 459 | 96 | 507 | 2.43e-25 | 110 |
Msa0930820 | AT1G10340.2 | 22.526 | 475 | 276 | 11 | 67 | 459 | 39 | 503 | 4.93e-25 | 109 |
Msa0930820 | AT5G51160.1 | 27.273 | 341 | 202 | 10 | 131 | 438 | 44 | 371 | 1.59e-22 | 100 |
Msa0930820 | AT5G54700.2 | 24.716 | 352 | 206 | 10 | 163 | 505 | 26 | 327 | 5.45e-22 | 97.8 |
Msa0930820 | AT4G03460.2 | 24.768 | 323 | 206 | 5 | 105 | 422 | 205 | 495 | 1.35e-21 | 99.0 |
Msa0930820 | AT4G03460.1 | 24.768 | 323 | 206 | 5 | 105 | 422 | 237 | 527 | 1.52e-21 | 99.0 |
Msa0930820 | AT1G03670.1 | 23.266 | 447 | 300 | 7 | 56 | 492 | 171 | 584 | 2.35e-21 | 98.2 |
Msa0930820 | AT4G03500.1 | 22.353 | 425 | 283 | 7 | 62 | 477 | 212 | 598 | 4.67e-20 | 94.4 |
Msa0930820 | AT4G03500.2 | 22.353 | 425 | 283 | 7 | 62 | 477 | 189 | 575 | 7.08e-20 | 94.0 |
Msa0930820 | AT4G03500.3 | 22.353 | 425 | 283 | 7 | 62 | 477 | 189 | 575 | 7.08e-20 | 94.0 |
Msa0930820 | AT4G10720.2 | 24.781 | 343 | 218 | 10 | 103 | 429 | 40 | 358 | 6.82e-19 | 89.4 |
Msa0930820 | AT2G24600.2 | 23.416 | 363 | 234 | 8 | 56 | 392 | 96 | 440 | 8.52e-19 | 90.1 |
Msa0930820 | AT2G24600.1 | 23.416 | 363 | 234 | 8 | 56 | 392 | 96 | 440 | 8.52e-19 | 90.1 |
Msa0930820 | AT4G10720.1 | 28.509 | 228 | 147 | 4 | 103 | 316 | 40 | 265 | 1.09e-18 | 89.4 |
Msa0930820 | AT4G03490.4 | 22.889 | 450 | 310 | 12 | 49 | 476 | 128 | 562 | 4.51e-18 | 88.2 |
Msa0930820 | AT4G03490.5 | 22.889 | 450 | 310 | 12 | 49 | 476 | 118 | 552 | 4.59e-18 | 88.2 |
Msa0930820 | AT4G03490.2 | 23.356 | 441 | 281 | 11 | 49 | 476 | 108 | 504 | 7.66e-18 | 87.4 |
Msa0930820 | AT4G03490.3 | 22.889 | 450 | 310 | 12 | 49 | 476 | 128 | 562 | 8.89e-18 | 87.4 |
Msa0930820 | AT4G03490.1 | 23.356 | 441 | 281 | 11 | 49 | 476 | 118 | 514 | 9.01e-18 | 87.4 |
Msa0930820 | AT5G50140.1 | 23.094 | 446 | 280 | 14 | 65 | 456 | 27 | 463 | 3.94e-17 | 84.7 |
Msa0930820 | AT4G03440.1 | 22.362 | 398 | 285 | 7 | 105 | 498 | 318 | 695 | 8.35e-17 | 84.3 |
Msa0930820 | AT4G03440.2 | 22.362 | 398 | 285 | 7 | 105 | 498 | 311 | 688 | 1.03e-16 | 84.0 |
Msa0930820 | AT4G03440.3 | 22.362 | 398 | 285 | 7 | 105 | 498 | 311 | 688 | 1.03e-16 | 84.0 |
Msa0930820 | AT5G54700.1 | 31.126 | 151 | 100 | 2 | 343 | 489 | 200 | 350 | 3.02e-16 | 82.0 |
Msa0930820 | AT4G03480.2 | 24.138 | 377 | 245 | 9 | 60 | 422 | 307 | 656 | 2.45e-15 | 79.7 |
Msa0930820 | AT4G03480.1 | 24.138 | 377 | 245 | 9 | 60 | 422 | 310 | 659 | 2.95e-15 | 79.3 |
Msa0930820 | AT3G04140.1 | 28.472 | 288 | 174 | 7 | 14 | 276 | 106 | 386 | 8.93e-15 | 77.8 |
Msa0930820 | AT5G15500.2 | 23.393 | 389 | 208 | 9 | 100 | 424 | 2 | 364 | 1.00e-14 | 77.0 |
Msa0930820 | AT4G14390.2 | 22.014 | 427 | 291 | 8 | 56 | 472 | 220 | 614 | 3.30e-14 | 75.9 |
Msa0930820 | AT4G14390.4 | 22.014 | 427 | 291 | 8 | 56 | 472 | 239 | 633 | 4.49e-14 | 75.5 |
Msa0930820 | AT5G54610.1 | 24.199 | 281 | 183 | 6 | 103 | 372 | 40 | 301 | 4.82e-14 | 74.7 |
Msa0930820 | AT1G14480.1 | 27.826 | 230 | 148 | 5 | 103 | 316 | 40 | 267 | 1.48e-13 | 73.2 |
Msa0930820 | AT4G14390.1 | 23.077 | 364 | 244 | 7 | 111 | 472 | 305 | 634 | 2.26e-13 | 73.6 |
Msa0930820 | AT5G54620.1 | 25.806 | 186 | 126 | 2 | 103 | 276 | 40 | 225 | 5.32e-13 | 71.6 |
Msa0930820 | AT3G01750.2 | 25.161 | 310 | 170 | 9 | 14 | 286 | 109 | 393 | 2.61e-11 | 66.6 |
Msa0930820 | AT3G01750.1 | 25.161 | 310 | 170 | 9 | 14 | 286 | 109 | 393 | 2.61e-11 | 66.6 |
Find 131 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGATGTGGTAAATGCTATTT+TGG | 0.194879 | 6_2:-79925796 | Msa0930820:CDS |
AAAACTCGCCGACGAGTTTC+CGG | 0.220434 | 6_2:-79924607 | Msa0930820:CDS |
CATATTCTGAAAGTGCTTCT+TGG | 0.231591 | 6_2:+79924737 | None:intergenic |
GCTATTACCATAACTGGTTT+AGG | 0.239123 | 6_2:-79924199 | Msa0930820:CDS |
TTGTGCCTGGCAAACTCTTT+AGG | 0.251798 | 6_2:-79923640 | Msa0930820:three_prime_UTR |
TTTCGCCTCAATAGCATTCT+TGG | 0.274513 | 6_2:-79924506 | Msa0930820:CDS |
GATAATTGTTAAAACTGATT+TGG | 0.277074 | 6_2:+79923927 | None:intergenic |
CAAGAAGCACTTTCAGAATA+TGG | 0.283596 | 6_2:-79924736 | Msa0930820:CDS |
TGTTTCTTGTTGCTTGTTGA+TGG | 0.288345 | 6_2:+79924810 | None:intergenic |
TTGGACTGCGGCAGCATATA+GGG | 0.294971 | 6_2:+79925827 | None:intergenic |
TGGATGGCTATTACCATAAC+TGG | 0.303698 | 6_2:-79924205 | Msa0930820:CDS |
CTATTACCATAACTGGTTTA+GGG | 0.304499 | 6_2:-79924198 | Msa0930820:CDS |
ATCACATAATTTGATCAAAA+AGG | 0.308077 | 6_2:+79926537 | None:intergenic |
AACCACTGTGACAGAGTTAA+TGG | 0.309857 | 6_2:+79924537 | None:intergenic |
ATGTATGTATATGTGATAAA+AGG | 0.312602 | 6_2:-79923566 | Msa0930820:three_prime_UTR |
TCTTTGATGCAAACTATTCC+TGG | 0.318592 | 6_2:+79925663 | None:intergenic |
CTTGGCTATATTCAATTTGC+CGG | 0.319423 | 6_2:-79924488 | Msa0930820:CDS |
ATGGAATTAATGCTAATATA+TGG | 0.325782 | 6_2:+79926992 | None:intergenic |
CTTGGACTGCGGCAGCATAT+AGG | 0.333630 | 6_2:+79925826 | None:intergenic |
AGGAAAGTTCTTGTCGATAA+TGG | 0.336622 | 6_2:+79923797 | None:intergenic |
TATATGGATGATGATGATTA+TGG | 0.347087 | 6_2:+79927008 | None:intergenic |
TTCAAATCACTTTGGTAGCT+TGG | 0.363305 | 6_2:-79924345 | Msa0930820:CDS |
TTACCACATCCAAGTGATCT+TGG | 0.370317 | 6_2:+79925808 | None:intergenic |
GAAGGAAAATAGAGAGAGAA+TGG | 0.381582 | 6_2:+79926973 | None:intergenic |
ATCTACAATATGGTGCTATC+AGG | 0.389170 | 6_2:+79923777 | None:intergenic |
GATCCTCTACATCTACAATA+TGG | 0.395256 | 6_2:+79923767 | None:intergenic |
GCCAGAGTCCCAACTAGAAT+TGG | 0.405803 | 6_2:+79924172 | None:intergenic |
GCACTTATTGTCCGTGATCC+AGG | 0.413807 | 6_2:-79925681 | Msa0930820:CDS |
GCTGGATCTGGAGACCTTGA+TGG | 0.415271 | 6_2:-79926730 | Msa0930820:CDS |
TCAAATCACTTTGGTAGCTT+GGG | 0.417875 | 6_2:-79924344 | Msa0930820:CDS |
CTGCACTACATAATGCTGTT+AGG | 0.423394 | 6_2:-79925728 | Msa0930820:CDS |
ATCTTCAGTGTTATATTTCG+TGG | 0.425507 | 6_2:+79923962 | None:intergenic |
TTTCAATTCCTTAGCTATAC+CGG | 0.426970 | 6_2:+79924588 | None:intergenic |
ATATTCACCACAGCTGGATC+TGG | 0.428365 | 6_2:-79926742 | Msa0930820:CDS |
AGGTCAAACTGCGCTACATA+TGG | 0.431611 | 6_2:-79925634 | Msa0930820:CDS |
TCTCGTTCGTTCAATATAGT+AGG | 0.439653 | 6_2:+79925561 | None:intergenic |
ACTGTTAGAGAAGCTTAATA+AGG | 0.441562 | 6_2:-79926698 | Msa0930820:CDS |
TAGGGATACCAATTCTAGTT+GGG | 0.446369 | 6_2:-79924180 | Msa0930820:CDS |
CCCTGGTTTCAGTTAAAAGC+TGG | 0.447205 | 6_2:+79923731 | None:intergenic |
TGGTATCCCTAAACCAGTTA+TGG | 0.456752 | 6_2:+79924192 | None:intergenic |
TGCGTCTCTGCGAATCACTT+TGG | 0.457508 | 6_2:+79924107 | None:intergenic |
GAAGATGGTGATAGAAGTAA+TGG | 0.458453 | 6_2:-79926673 | Msa0930820:CDS |
AGTGATAACGTTTCCTTACC+AGG | 0.461223 | 6_2:-79923698 | Msa0930820:three_prime_UTR |
TTCAGTTAAAAGCTGGAAGC+AGG | 0.461440 | 6_2:+79923738 | None:intergenic |
GCAGCTAAGCGTGGCCATCT+TGG | 0.468196 | 6_2:-79926463 | Msa0930820:intron |
ATTATGAAAGGATCACATAT+AGG | 0.475016 | 6_2:-79924457 | Msa0930820:CDS |
AAGCTTAATAAGGAAGAAGA+TGG | 0.476184 | 6_2:-79926688 | Msa0930820:CDS |
TTAGGGATACCAATTCTAGT+TGG | 0.478692 | 6_2:-79924181 | Msa0930820:CDS |
GATGATTATGGATGGATGGA+TGG | 0.484895 | 6_2:+79927020 | None:intergenic |
AAGATCTATGCTTTGTAAGC+TGG | 0.491359 | 6_2:-79923998 | Msa0930820:exon |
ATTGAACGAACGAGATAAGA+AGG | 0.492542 | 6_2:-79925553 | Msa0930820:CDS |
CAATCAATATTCACCACAGC+TGG | 0.492782 | 6_2:-79926748 | Msa0930820:CDS |
ACAGTTTCTTCAACCCATCA+AGG | 0.495729 | 6_2:+79926716 | None:intergenic |
GGAAGCACGTCTCTTGTACA+TGG | 0.499454 | 6_2:+79923513 | None:intergenic |
AGACGCATCAAGAGAGCAAG+TGG | 0.505968 | 6_2:-79924091 | Msa0930820:CDS |
TTAGCAGATAAACTGCCATA+TGG | 0.506840 | 6_2:-79924778 | Msa0930820:CDS |
CTTTGGTAGCTTGGGACACA+AGG | 0.509015 | 6_2:-79924336 | Msa0930820:CDS |
CAATAAGTGCTTTCACAATA+CGG | 0.511144 | 6_2:+79925694 | None:intergenic |
TCTAAAGCTGACGATCCATA+TGG | 0.511646 | 6_2:+79924763 | None:intergenic |
TATCACTAGGGTAACTCCCC+TGG | 0.517183 | 6_2:+79923714 | None:intergenic |
CCGGGTCAATATATTATGAA+AGG | 0.520442 | 6_2:-79924469 | Msa0930820:CDS |
TACGCGGAAAGGCCGGTCAC+AGG | 0.521929 | 6_2:-79925508 | Msa0930820:intron |
CTACATAATGCTGTTAGGTA+TGG | 0.523561 | 6_2:-79925723 | Msa0930820:CDS |
CTTCACATGGCTACGCGGAA+AGG | 0.523901 | 6_2:-79925519 | Msa0930820:CDS |
GTCACACAACTTACAAACCT+CGG | 0.525962 | 6_2:+79925866 | None:intergenic |
CTGTTGTTAACAAGCTAATG+TGG | 0.526218 | 6_2:-79924294 | Msa0930820:CDS |
GTATATGTGATAAAAGGAAA+AGG | 0.528554 | 6_2:-79923560 | Msa0930820:three_prime_UTR |
CTGGATCTGGAGACCTTGAT+GGG | 0.530769 | 6_2:-79926729 | Msa0930820:CDS |
AGAATGCTATTGAGGCGAAA+AGG | 0.530984 | 6_2:+79924509 | None:intergenic |
AACATCATCTTCATCTATGT+CGG | 0.533622 | 6_2:-79926644 | Msa0930820:CDS |
ACCAATTCTAGTTGGGACTC+TGG | 0.534427 | 6_2:-79924173 | Msa0930820:CDS |
ACATGGCTACGCGGAAAGGC+CGG | 0.534860 | 6_2:-79925515 | Msa0930820:CDS |
GCAAACCTAAAGAGTTTGCC+AGG | 0.541237 | 6_2:+79923635 | None:intergenic |
TGATGATGATTATGGATGGA+TGG | 0.541650 | 6_2:+79927016 | None:intergenic |
ACAGAGTACATCAGTGGTGG+AGG | 0.543153 | 6_2:-79925601 | Msa0930820:CDS |
GGTAAGGAAACGTTATCACT+AGG | 0.545262 | 6_2:+79923701 | None:intergenic |
TTGGCTATATTCAATTTGCC+GGG | 0.547911 | 6_2:-79924487 | Msa0930820:CDS |
CTGTGGTGAATATTGATTGG+TGG | 0.549448 | 6_2:+79926752 | None:intergenic |
ATAACTAGAGAGATGAATCC+TGG | 0.550549 | 6_2:+79923680 | None:intergenic |
CAACTTACAAACCTCGGGCC+AGG | 0.555562 | 6_2:+79925872 | None:intergenic |
TATAGCCAAGAATGCTATTG+AGG | 0.559760 | 6_2:+79924501 | None:intergenic |
TAGAGAGATGAATCCTGGTA+AGG | 0.559946 | 6_2:+79923685 | None:intergenic |
GAAGCACGTCTCTTGTACAT+GGG | 0.560799 | 6_2:+79923514 | None:intergenic |
TCTAACATTGCGGATCATGT+TGG | 0.560863 | 6_2:-79924430 | Msa0930820:CDS |
GCTAAATATGCAAGACATGT+TGG | 0.561894 | 6_2:-79924712 | Msa0930820:CDS |
GTGGAAGCAAATCCTTCTCA+TGG | 0.564022 | 6_2:-79924072 | Msa0930820:CDS |
TCACACAACTTACAAACCTC+GGG | 0.565097 | 6_2:+79925867 | None:intergenic |
TGCGGCAGCATATAGGGGAC+TGG | 0.565490 | 6_2:+79925833 | None:intergenic |
AAGATGGTGATAGAAGTAAT+GGG | 0.566107 | 6_2:-79926672 | Msa0930820:CDS |
ATCCAAGTGATCTTGGACTG+CGG | 0.566122 | 6_2:+79925815 | None:intergenic |
TGCCGCAGTCCAAGATCACT+TGG | 0.567594 | 6_2:-79925817 | Msa0930820:CDS |
CAAGCAACAAGAAACAGCCT+TGG | 0.570473 | 6_2:-79924803 | Msa0930820:CDS |
TGTTGTTGTTCAAATCACTT+TGG | 0.570912 | 6_2:-79924353 | Msa0930820:CDS |
TGGACTGCGGCAGCATATAG+GGG | 0.571980 | 6_2:+79925828 | None:intergenic |
CAGCTGTGGTGAATATTGAT+TGG | 0.574642 | 6_2:+79926749 | None:intergenic |
TAGCTATACCGGAAACTCGT+CGG | 0.577902 | 6_2:+79924599 | None:intergenic |
ATGTCTCTTCAAAATGATCA+TGG | 0.578765 | 6_2:-79926610 | Msa0930820:CDS |
GCGCTACATATGGCTGTCAA+AGG | 0.582666 | 6_2:-79925624 | Msa0930820:CDS |
GAATGAGTTTAACCTGTGAC+CGG | 0.583506 | 6_2:+79925496 | None:intergenic |
GGGTAATACCGCTCTTCACA+TGG | 0.583634 | 6_2:-79925532 | Msa0930820:CDS |
CCTTTCATAATATATTGACC+CGG | 0.584046 | 6_2:+79924469 | None:intergenic |
TTTCATGTTGCAGCTAAGCG+TGG | 0.587939 | 6_2:-79926472 | Msa0930820:CDS |
GCACCATATTGTAGATGTAG+AGG | 0.589254 | 6_2:-79923770 | Msa0930820:three_prime_UTR |
TTTGCTAAGCTATGCAGCTG+TGG | 0.589326 | 6_2:-79924842 | Msa0930820:CDS |
GCTGCTTGTGCTTGCACGTG+CGG | 0.591233 | 6_2:-79924271 | Msa0930820:CDS |
ACGAGTTTCCGGTATAGCTA+AGG | 0.593408 | 6_2:-79924596 | Msa0930820:CDS |
AGCTGCACACAATAATCTCA+AGG | 0.604525 | 6_2:-79926569 | Msa0930820:CDS |
TGTGGTGAATATTGATTGGT+GGG | 0.604833 | 6_2:+79926753 | None:intergenic |
AGTCCAAGATCACTTGGATG+TGG | 0.606081 | 6_2:-79925811 | Msa0930820:CDS |
GTAAGGAAACGTTATCACTA+GGG | 0.612504 | 6_2:+79923702 | None:intergenic |
CAGTTTATCTGCTAAATCCA+AGG | 0.614223 | 6_2:+79924786 | None:intergenic |
ATGATTATGGATGGATGGAT+GGG | 0.614356 | 6_2:+79927021 | None:intergenic |
TGGTAAAGTAGATGAAGCCA+TGG | 0.615814 | 6_2:-79924692 | Msa0930820:CDS |
CCGCTCTTCACATGGCTACG+CGG | 0.621597 | 6_2:-79925524 | Msa0930820:CDS |
TGGATGATGATGATTATGGA+TGG | 0.622028 | 6_2:+79927012 | None:intergenic |
TTGAACGAACGAGATAAGAA+GGG | 0.622382 | 6_2:-79925552 | Msa0930820:CDS |
TGCAAACTATTCCTGGATCA+CGG | 0.623341 | 6_2:+79925670 | None:intergenic |
TTGTGTGCAGCTATGTAAAG+TGG | 0.624900 | 6_2:+79926580 | None:intergenic |
GAATAAGTAGAATACCAAGA+TGG | 0.625558 | 6_2:+79926449 | None:intergenic |
TGTTGTTAACAAGCTAATGT+GGG | 0.633610 | 6_2:-79924293 | Msa0930820:CDS |
TGCAGAGTAAGACCATGAGA+AGG | 0.634865 | 6_2:+79924060 | None:intergenic |
TTTGGTAGCTTGGGACACAA+GGG | 0.645817 | 6_2:-79924335 | Msa0930820:CDS |
AGGACAGAGTACATCAGTGG+TGG | 0.646873 | 6_2:-79925604 | Msa0930820:CDS |
AGTGAGTGATATAAAGCATG+AGG | 0.658021 | 6_2:-79924656 | Msa0930820:CDS |
CACCATTAACTCTGTCACAG+TGG | 0.670427 | 6_2:-79924539 | Msa0930820:CDS |
AAGCACGTCTCTTGTACATG+GGG | 0.679778 | 6_2:+79923515 | None:intergenic |
CCGCGTAGCCATGTGAAGAG+CGG | 0.680358 | 6_2:+79925524 | None:intergenic |
GGATGGGTGCAACAAACAAG+TGG | 0.687910 | 6_2:+79927037 | None:intergenic |
CAAAGGACAGAGTACATCAG+TGG | 0.688738 | 6_2:-79925607 | Msa0930820:CDS |
AAGGTCTCCAGATCCAGCTG+TGG | 0.699168 | 6_2:+79926735 | None:intergenic |
TATAGGAGAATCTAACATTG+CGG | 0.704490 | 6_2:-79924440 | Msa0930820:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTTTTGTTTTTTTTGTGA+TGG | - | chr6_2:79923744-79923763 | Msa0930820:three_prime_UTR | 15.0% |
!! | ATTAATGAACTTTACAATTA+AGG | + | chr6_2:79924299-79924318 | None:intergenic | 15.0% |
!!! | ATTTTTTCTAACTATAAACA+TGG | + | chr6_2:79924789-79924808 | None:intergenic | 15.0% |
!! | ATGTTTATAGTTAGAAAAAA+TGG | - | chr6_2:79924788-79924807 | Msa0930820:CDS | 15.0% |
!! | TGTTTATAGTTAGAAAAAAT+GGG | - | chr6_2:79924789-79924808 | Msa0930820:CDS | 15.0% |
!!! | AAGTTATAATCATTTTGATT+TGG | - | chr6_2:79926651-79926670 | Msa0930820:CDS | 15.0% |
!!! | ATAATTTTATAATGTATCAG+TGG | - | chr6_2:79926709-79926728 | Msa0930820:CDS | 15.0% |
!! | ATGGAATTAATGCTAATATA+TGG | + | chr6_2:79923555-79923574 | None:intergenic | 20.0% |
!! | ATCACATAATTTGATCAAAA+AGG | + | chr6_2:79924010-79924029 | None:intergenic | 20.0% |
!!! | TTTCTTTTTTTCTTTTGTGT+TGG | - | chr6_2:79924124-79924143 | Msa0930820:CDS | 20.0% |
!!! | TGTTGTACATCTTTTAAATT+TGG | - | chr6_2:79924423-79924442 | Msa0930820:CDS | 20.0% |
!! | GATAATTGTTAAAACTGATT+TGG | + | chr6_2:79926620-79926639 | None:intergenic | 20.0% |
!! | ATGTATGTATATGTGATAAA+AGG | - | chr6_2:79926978-79926997 | Msa0930820:five_prime_UTR | 20.0% |
!! | TATATGGATGATGATGATTA+TGG | + | chr6_2:79923539-79923558 | None:intergenic | 25.0% |
! | AAATATTAAGAACCTGTGTT+TGG | - | chr6_2:79924159-79924178 | Msa0930820:CDS | 25.0% |
!! | TGTTTGGATATTGCTATTAT+TGG | - | chr6_2:79924175-79924194 | Msa0930820:CDS | 25.0% |
! | TTTGGATAAAGATTGTTTCA+GGG | - | chr6_2:79924244-79924263 | Msa0930820:CDS | 25.0% |
! | CTTACATTGCATAATTGTAA+TGG | - | chr6_2:79924532-79924551 | Msa0930820:CDS | 25.0% |
!!! | AAGATTGTAACATTTGCTAT+CGG | + | chr6_2:79924565-79924584 | None:intergenic | 25.0% |
! | GTTTGCATCAAAGATAAAAA+AGG | - | chr6_2:79924890-79924909 | Msa0930820:intron | 25.0% |
! | AAAGAATCTACAACTATACA+TGG | + | chr6_2:79925081-79925100 | None:intergenic | 25.0% |
! | CAATACTAGTTAATTACAAC+TGG | - | chr6_2:79925424-79925443 | Msa0930820:intron | 25.0% |
! | AGGCTCATTTATATACATAA+TGG | - | chr6_2:79925556-79925575 | Msa0930820:CDS | 25.0% |
! | AAAGACAAGCAAATTATGAA+AGG | + | chr6_2:79925602-79925621 | None:intergenic | 25.0% |
! | CAACAAAAATACAAAATGAG+AGG | + | chr6_2:79925642-79925661 | None:intergenic | 25.0% |
! | ATTATGAAAGGATCACATAT+AGG | - | chr6_2:79926087-79926106 | Msa0930820:intron | 25.0% |
!!! | TTTGTTTTTCGACAACATTT+TGG | - | chr6_2:79926408-79926427 | Msa0930820:intron | 25.0% |
! | GTATATGTGATAAAAGGAAA+AGG | - | chr6_2:79926984-79927003 | Msa0930820:five_prime_UTR | 25.0% |
AATGAAGAAGAAGAAGAAGA+AGG | + | chr6_2:79923592-79923611 | None:intergenic | 30.0% | |
ACTGTTAGAGAAGCTTAATA+AGG | - | chr6_2:79923846-79923865 | Msa0930820:three_prime_UTR | 30.0% | |
AAGCTTAATAAGGAAGAAGA+TGG | - | chr6_2:79923856-79923875 | Msa0930820:three_prime_UTR | 30.0% | |
AAGATGGTGATAGAAGTAAT+GGG | - | chr6_2:79923872-79923891 | Msa0930820:three_prime_UTR | 30.0% | |
AACATCATCTTCATCTATGT+CGG | - | chr6_2:79923900-79923919 | Msa0930820:three_prime_UTR | 30.0% | |
ATGTCTCTTCAAAATGATCA+TGG | - | chr6_2:79923934-79923953 | Msa0930820:three_prime_UTR | 30.0% | |
GAATAAGTAGAATACCAAGA+TGG | + | chr6_2:79924098-79924117 | None:intergenic | 30.0% | |
TAATAGCAATATCCAAACAC+AGG | + | chr6_2:79924174-79924193 | None:intergenic | 30.0% | |
TATTATTGGATGAACTGTGT+TGG | - | chr6_2:79924189-79924208 | Msa0930820:CDS | 30.0% | |
! | TGGTTCTATTACTCATAATC+CGG | - | chr6_2:79924209-79924228 | Msa0930820:CDS | 30.0% |
GTTTGGATAAAGATTGTTTC+AGG | - | chr6_2:79924243-79924262 | Msa0930820:CDS | 30.0% | |
TTCAATTACACGAAGTTTCA+GGG | - | chr6_2:79924327-79924346 | Msa0930820:CDS | 30.0% | |
TCTACTTACTAGGATAGAAT+TGG | - | chr6_2:79924497-79924516 | Msa0930820:CDS | 30.0% | |
!!! | ACTTTTTTCCAGATATTGTG+AGG | - | chr6_2:79924636-79924655 | Msa0930820:CDS | 30.0% |
!!! | CTTTTTTCCAGATATTGTGA+GGG | - | chr6_2:79924637-79924656 | Msa0930820:CDS | 30.0% |
CAATAAGTGCTTTCACAATA+CGG | + | chr6_2:79924853-79924872 | None:intergenic | 30.0% | |
AATTTCATGTTAAACGTCGT+TGG | - | chr6_2:79925314-79925333 | Msa0930820:intron | 30.0% | |
TAAGGAATGAGGATAGTTTA+GGG | + | chr6_2:79925529-79925548 | None:intergenic | 30.0% | |
ATAAGGAATGAGGATAGTTT+AGG | + | chr6_2:79925530-79925549 | None:intergenic | 30.0% | |
TAAATGAGCCTCAACTAATA+AGG | + | chr6_2:79925547-79925566 | None:intergenic | 30.0% | |
TTGTTGTCTTTACTGACAAA+TGG | - | chr6_2:79925656-79925675 | Msa0930820:CDS | 30.0% | |
TTTCAATTCCTTAGCTATAC+CGG | + | chr6_2:79925959-79925978 | None:intergenic | 30.0% | |
CCTTTCATAATATATTGACC+CGG | + | chr6_2:79926078-79926097 | None:intergenic | 30.0% | |
TATAGGAGAATCTAACATTG+CGG | - | chr6_2:79926104-79926123 | Msa0930820:intron | 30.0% | |
! | TGTTGTTGTTCAAATCACTT+TGG | - | chr6_2:79926191-79926210 | Msa0930820:intron | 30.0% |
TGTTGTTAACAAGCTAATGT+GGG | - | chr6_2:79926251-79926270 | Msa0930820:intron | 30.0% | |
AGGTTGTTGGAAAGAAAAAA+TGG | - | chr6_2:79926319-79926338 | Msa0930820:intron | 30.0% | |
TGTTGGAAAGAAAAAATGGA+TGG | - | chr6_2:79926323-79926342 | Msa0930820:intron | 30.0% | |
! | CTATTACCATAACTGGTTTA+GGG | - | chr6_2:79926346-79926365 | Msa0930820:intron | 30.0% |
ATCTTCAGTGTTATATTTCG+TGG | + | chr6_2:79926585-79926604 | None:intergenic | 30.0% | |
ATTTGGTAAAAATGCTGATG+AGG | - | chr6_2:79926668-79926687 | Msa0930820:CDS | 30.0% | |
! | AGTTATCAGCTTGAAGTTTT+AGG | - | chr6_2:79926881-79926900 | Msa0930820:five_prime_UTR | 30.0% |
ATGATTATGGATGGATGGAT+GGG | + | chr6_2:79923526-79923545 | None:intergenic | 35.0% | |
! | TGATGATGATTATGGATGGA+TGG | + | chr6_2:79923531-79923550 | None:intergenic | 35.0% |
! | TGGATGATGATGATTATGGA+TGG | + | chr6_2:79923535-79923554 | None:intergenic | 35.0% |
GAAGGAAAATAGAGAGAGAA+TGG | + | chr6_2:79923574-79923593 | None:intergenic | 35.0% | |
!!! | ACTGTTTTAGCTTTGAGTTG+AGG | + | chr6_2:79923678-79923697 | None:intergenic | 35.0% |
!!! | TTTTTTTGTGATGGAGTCGA+AGG | - | chr6_2:79923753-79923772 | Msa0930820:three_prime_UTR | 35.0% |
!!! | TTTTTTGTGATGGAGTCGAA+GGG | - | chr6_2:79923754-79923773 | Msa0930820:three_prime_UTR | 35.0% |
! | TGTGGTGAATATTGATTGGT+GGG | + | chr6_2:79923794-79923813 | None:intergenic | 35.0% |
GAAGATGGTGATAGAAGTAA+TGG | - | chr6_2:79923871-79923890 | Msa0930820:three_prime_UTR | 35.0% | |
TCATAATCCGGAGTTAAGTA+AGG | - | chr6_2:79924221-79924240 | Msa0930820:CDS | 35.0% | |
ATCCAAACCTTACTTAACTC+CGG | + | chr6_2:79924231-79924250 | None:intergenic | 35.0% | |
AAGATTGTTTCAGGGTTCTA+AGG | - | chr6_2:79924252-79924271 | Msa0930820:CDS | 35.0% | |
GTTCAATTACACGAAGTTTC+AGG | - | chr6_2:79924326-79924345 | Msa0930820:CDS | 35.0% | |
CATGTGAAGATCTACTTACT+AGG | - | chr6_2:79924487-79924506 | Msa0930820:CDS | 35.0% | |
AAAATCTCCCTCACAATATC+TGG | + | chr6_2:79924647-79924666 | None:intergenic | 35.0% | |
!! | GGATGTGGTAAATGCTATTT+TGG | - | chr6_2:79924748-79924767 | Msa0930820:CDS | 35.0% |
CTACATAATGCTGTTAGGTA+TGG | - | chr6_2:79924821-79924840 | Msa0930820:CDS | 35.0% | |
TCTTTGATGCAAACTATTCC+TGG | + | chr6_2:79924884-79924903 | None:intergenic | 35.0% | |
TCTCGTTCGTTCAATATAGT+AGG | + | chr6_2:79924986-79925005 | None:intergenic | 35.0% | |
ATTGAACGAACGAGATAAGA+AGG | - | chr6_2:79924991-79925010 | Msa0930820:intron | 35.0% | |
TTGAACGAACGAGATAAGAA+GGG | - | chr6_2:79924992-79925011 | Msa0930820:intron | 35.0% | |
AAGTTGTTTATCCGAGATGA+TGG | - | chr6_2:79925142-79925161 | Msa0930820:intron | 35.0% | |
! | CTTGGATTTTTCCATCATCT+CGG | + | chr6_2:79925156-79925175 | None:intergenic | 35.0% |
TGGAAAAATCCAAGATTTCC+TGG | - | chr6_2:79925162-79925181 | Msa0930820:intron | 35.0% | |
TCATTCATTCCAGGAAATCT+TGG | + | chr6_2:79925174-79925193 | None:intergenic | 35.0% | |
GATTTCCTGGAATGAATGAT+AGG | - | chr6_2:79925175-79925194 | Msa0930820:intron | 35.0% | |
ATGCTTGAACTTCTTCCTAT+AGG | - | chr6_2:79925242-79925261 | Msa0930820:intron | 35.0% | |
ATCAACTGTTAAGTGCCTAT+AGG | + | chr6_2:79925260-79925279 | None:intergenic | 35.0% | |
! | TAACTAGTATTGAGAACTCG+TGG | + | chr6_2:79925416-79925435 | None:intergenic | 35.0% |
!!! | GGTCTTGGATTTTAAAGCAT+AGG | - | chr6_2:79925462-79925481 | Msa0930820:intron | 35.0% |
GGCTGTGTAAATTTAAGCTA+TGG | - | chr6_2:79925483-79925502 | Msa0930820:intron | 35.0% | |
TCCTCATTCCTTATTAGTTG+AGG | - | chr6_2:79925536-79925555 | Msa0930820:CDS | 35.0% | |
! | TGTTTCTTGTTGCTTGTTGA+TGG | + | chr6_2:79925737-79925756 | None:intergenic | 35.0% |
CAGTTTATCTGCTAAATCCA+AGG | + | chr6_2:79925761-79925780 | None:intergenic | 35.0% | |
TTAGCAGATAAACTGCCATA+TGG | - | chr6_2:79925766-79925785 | Msa0930820:CDS | 35.0% | |
!! | CATATTCTGAAAGTGCTTCT+TGG | + | chr6_2:79925810-79925829 | None:intergenic | 35.0% |
!! | CAAGAAGCACTTTCAGAATA+TGG | - | chr6_2:79925808-79925827 | Msa0930820:CDS | 35.0% |
GCTAAATATGCAAGACATGT+TGG | - | chr6_2:79925832-79925851 | Msa0930820:CDS | 35.0% | |
!!! | CACTGTTCTTTTAAGTTCCA+TGG | + | chr6_2:79925872-79925891 | None:intergenic | 35.0% |
AGTGAGTGATATAAAGCATG+AGG | - | chr6_2:79925888-79925907 | Msa0930820:CDS | 35.0% | |
TATAGCCAAGAATGCTATTG+AGG | + | chr6_2:79926046-79926065 | None:intergenic | 35.0% | |
CTTGGCTATATTCAATTTGC+CGG | - | chr6_2:79926056-79926075 | Msa0930820:intron | 35.0% | |
TTGGCTATATTCAATTTGCC+GGG | - | chr6_2:79926057-79926076 | Msa0930820:intron | 35.0% | |
CCGGGTCAATATATTATGAA+AGG | - | chr6_2:79926075-79926094 | Msa0930820:intron | 35.0% | |
! | TTCAAATCACTTTGGTAGCT+TGG | - | chr6_2:79926199-79926218 | Msa0930820:intron | 35.0% |
! | TCAAATCACTTTGGTAGCTT+GGG | - | chr6_2:79926200-79926219 | Msa0930820:intron | 35.0% |
CTGTTGTTAACAAGCTAATG+TGG | - | chr6_2:79926250-79926269 | Msa0930820:intron | 35.0% | |
!!! | TTTTTTGGCAATCGCTTTTG+AGG | - | chr6_2:79926299-79926318 | Msa0930820:intron | 35.0% |
! | GCTATTACCATAACTGGTTT+AGG | - | chr6_2:79926345-79926364 | Msa0930820:intron | 35.0% |
TTAGGGATACCAATTCTAGT+TGG | - | chr6_2:79926363-79926382 | Msa0930820:intron | 35.0% | |
! | TAGGGATACCAATTCTAGTT+GGG | - | chr6_2:79926364-79926383 | Msa0930820:intron | 35.0% |
AAGATCTATGCTTTGTAAGC+TGG | - | chr6_2:79926546-79926565 | Msa0930820:CDS | 35.0% | |
AGGAAAGTTCTTGTCGATAA+TGG | + | chr6_2:79926750-79926769 | None:intergenic | 35.0% | |
!! | ATCTACAATATGGTGCTATC+AGG | + | chr6_2:79926770-79926789 | None:intergenic | 35.0% |
GATCCTCTACATCTACAATA+TGG | + | chr6_2:79926780-79926799 | None:intergenic | 35.0% | |
GTAAGGAAACGTTATCACTA+GGG | + | chr6_2:79926845-79926864 | None:intergenic | 35.0% | |
ATAACTAGAGAGATGAATCC+TGG | + | chr6_2:79926867-79926886 | None:intergenic | 35.0% | |
GATGATTATGGATGGATGGA+TGG | + | chr6_2:79923527-79923546 | None:intergenic | 40.0% | |
! | CTGTGGTGAATATTGATTGG+TGG | + | chr6_2:79923795-79923814 | None:intergenic | 40.0% |
CAGCTGTGGTGAATATTGAT+TGG | + | chr6_2:79923798-79923817 | None:intergenic | 40.0% | |
CAATCAATATTCACCACAGC+TGG | - | chr6_2:79923796-79923815 | Msa0930820:three_prime_UTR | 40.0% | |
ACAGTTTCTTCAACCCATCA+AGG | + | chr6_2:79923831-79923850 | None:intergenic | 40.0% | |
TTGTGTGCAGCTATGTAAAG+TGG | + | chr6_2:79923967-79923986 | None:intergenic | 40.0% | |
AGCTGCACACAATAATCTCA+AGG | - | chr6_2:79923975-79923994 | Msa0930820:three_prime_UTR | 40.0% | |
ATCCGGAGTTAAGTAAGGTT+TGG | - | chr6_2:79924226-79924245 | Msa0930820:CDS | 40.0% | |
TCACACAACTTACAAACCTC+GGG | + | chr6_2:79924680-79924699 | None:intergenic | 40.0% | |
GTCACACAACTTACAAACCT+CGG | + | chr6_2:79924681-79924700 | None:intergenic | 40.0% | |
TTACCACATCCAAGTGATCT+TGG | + | chr6_2:79924739-79924758 | None:intergenic | 40.0% | |
CTGCACTACATAATGCTGTT+AGG | - | chr6_2:79924816-79924835 | Msa0930820:CDS | 40.0% | |
TGCAAACTATTCCTGGATCA+CGG | + | chr6_2:79924877-79924896 | None:intergenic | 40.0% | |
GAATGAGTTTAACCTGTGAC+CGG | + | chr6_2:79925051-79925070 | None:intergenic | 40.0% | |
TCCTGGAATGAATGATAGGA+AGG | - | chr6_2:79925179-79925198 | Msa0930820:intron | 40.0% | |
TCCTTCCTATCATTCATTCC+AGG | + | chr6_2:79925183-79925202 | None:intergenic | 40.0% | |
!! | AACTGGAAGCATCATATCAC+TGG | - | chr6_2:79925441-79925460 | Msa0930820:intron | 40.0% |
! | AAGCATCATATCACTGGTCT+TGG | - | chr6_2:79925447-79925466 | Msa0930820:intron | 40.0% |
GCCTCAACTAATAAGGAATG+AGG | + | chr6_2:79925540-79925559 | None:intergenic | 40.0% | |
! | TCTAAAGCTGACGATCCATA+TGG | + | chr6_2:79925784-79925803 | None:intergenic | 40.0% |
TGGTAAAGTAGATGAAGCCA+TGG | - | chr6_2:79925852-79925871 | Msa0930820:CDS | 40.0% | |
AACCACTGTGACAGAGTTAA+TGG | + | chr6_2:79926010-79926029 | None:intergenic | 40.0% | |
AGAATGCTATTGAGGCGAAA+AGG | + | chr6_2:79926038-79926057 | None:intergenic | 40.0% | |
TTTCGCCTCAATAGCATTCT+TGG | - | chr6_2:79926038-79926057 | Msa0930820:intron | 40.0% | |
TCTAACATTGCGGATCATGT+TGG | - | chr6_2:79926114-79926133 | Msa0930820:intron | 40.0% | |
TGGATGGCTATTACCATAAC+TGG | - | chr6_2:79926339-79926358 | Msa0930820:intron | 40.0% | |
TGGTATCCCTAAACCAGTTA+TGG | + | chr6_2:79926355-79926374 | None:intergenic | 40.0% | |
GCACCATATTGTAGATGTAG+AGG | - | chr6_2:79926774-79926793 | Msa0930820:CDS | 40.0% | |
TTCAGTTAAAAGCTGGAAGC+AGG | + | chr6_2:79926809-79926828 | None:intergenic | 40.0% | |
!! | TCCAGCTTTTAACTGAAACC+AGG | - | chr6_2:79926812-79926831 | Msa0930820:five_prime_UTR | 40.0% |
!! | CCAGCTTTTAACTGAAACCA+GGG | - | chr6_2:79926813-79926832 | Msa0930820:five_prime_UTR | 40.0% |
!! | CAGCTTTTAACTGAAACCAG+GGG | - | chr6_2:79926814-79926833 | Msa0930820:five_prime_UTR | 40.0% |
GGTAAGGAAACGTTATCACT+AGG | + | chr6_2:79926846-79926865 | None:intergenic | 40.0% | |
! | AGTGATAACGTTTCCTTACC+AGG | - | chr6_2:79926846-79926865 | Msa0930820:five_prime_UTR | 40.0% |
TAGAGAGATGAATCCTGGTA+AGG | + | chr6_2:79926862-79926881 | None:intergenic | 40.0% | |
!!! | TTGAAGTTTTAGGTTGTGCC+TGG | - | chr6_2:79926891-79926910 | Msa0930820:five_prime_UTR | 40.0% |
ATATTCACCACAGCTGGATC+TGG | - | chr6_2:79923802-79923821 | Msa0930820:three_prime_UTR | 45.0% | |
TTTCATGTTGCAGCTAAGCG+TGG | - | chr6_2:79924072-79924091 | Msa0930820:CDS | 45.0% | |
ATCCAAGTGATCTTGGACTG+CGG | + | chr6_2:79924732-79924751 | None:intergenic | 45.0% | |
AGTCCAAGATCACTTGGATG+TGG | - | chr6_2:79924733-79924752 | Msa0930820:CDS | 45.0% | |
AGGTCAAACTGCGCTACATA+TGG | - | chr6_2:79924910-79924929 | Msa0930820:intron | 45.0% | |
CAAAGGACAGAGTACATCAG+TGG | - | chr6_2:79924937-79924956 | Msa0930820:intron | 45.0% | |
TTTGCTAAGCTATGCAGCTG+TGG | - | chr6_2:79925702-79925721 | Msa0930820:CDS | 45.0% | |
CAAGCAACAAGAAACAGCCT+TGG | - | chr6_2:79925741-79925760 | Msa0930820:CDS | 45.0% | |
TAGCTATACCGGAAACTCGT+CGG | + | chr6_2:79925948-79925967 | None:intergenic | 45.0% | |
ACGAGTTTCCGGTATAGCTA+AGG | - | chr6_2:79925948-79925967 | Msa0930820:intron | 45.0% | |
CACCATTAACTCTGTCACAG+TGG | - | chr6_2:79926005-79926024 | Msa0930820:intron | 45.0% | |
! | TTTGGTAGCTTGGGACACAA+GGG | - | chr6_2:79926209-79926228 | Msa0930820:intron | 45.0% |
!!! | GCAATCGCTTTTGAGGTTGT+TGG | - | chr6_2:79926306-79926325 | Msa0930820:intron | 45.0% |
! | ACCAATTCTAGTTGGGACTC+TGG | - | chr6_2:79926371-79926390 | Msa0930820:intron | 45.0% |
GTGGAAGCAAATCCTTCTCA+TGG | - | chr6_2:79926472-79926491 | Msa0930820:CDS | 45.0% | |
TGCAGAGTAAGACCATGAGA+AGG | + | chr6_2:79926487-79926506 | None:intergenic | 45.0% | |
CCCTGGTTTCAGTTAAAAGC+TGG | + | chr6_2:79926816-79926835 | None:intergenic | 45.0% | |
TTGTGCCTGGCAAACTCTTT+AGG | - | chr6_2:79926904-79926923 | Msa0930820:five_prime_UTR | 45.0% | |
GCAAACCTAAAGAGTTTGCC+AGG | + | chr6_2:79926912-79926931 | None:intergenic | 45.0% | |
AAGCACGTCTCTTGTACATG+GGG | + | chr6_2:79927032-79927051 | None:intergenic | 45.0% | |
GAAGCACGTCTCTTGTACAT+GGG | + | chr6_2:79927033-79927052 | None:intergenic | 45.0% | |
!!! | TATGATTTTTATTATTTTTT+TGG | + | chr6_2:79923711-79923730 | None:intergenic | 5.0% |
CTGGATCTGGAGACCTTGAT+GGG | - | chr6_2:79923815-79923834 | Msa0930820:three_prime_UTR | 50.0% | |
! | TGAGGGAGATTTTGTGTGCC+TGG | - | chr6_2:79924654-79924673 | Msa0930820:CDS | 50.0% |
TTGGACTGCGGCAGCATATA+GGG | + | chr6_2:79924720-79924739 | None:intergenic | 50.0% | |
GCACTTATTGTCCGTGATCC+AGG | - | chr6_2:79924863-79924882 | Msa0930820:intron | 50.0% | |
GCGCTACATATGGCTGTCAA+AGG | - | chr6_2:79924920-79924939 | Msa0930820:intron | 50.0% | |
AGGACAGAGTACATCAGTGG+TGG | - | chr6_2:79924940-79924959 | Msa0930820:intron | 50.0% | |
ACAGAGTACATCAGTGGTGG+AGG | - | chr6_2:79924943-79924962 | Msa0930820:intron | 50.0% | |
GGGTAATACCGCTCTTCACA+TGG | - | chr6_2:79925012-79925031 | Msa0930820:intron | 50.0% | |
AAAACTCGCCGACGAGTTTC+CGG | - | chr6_2:79925937-79925956 | Msa0930820:intron | 50.0% | |
! | CTTTGGTAGCTTGGGACACA+AGG | - | chr6_2:79926208-79926227 | Msa0930820:intron | 50.0% |
GCCAGAGTCCCAACTAGAAT+TGG | + | chr6_2:79926375-79926394 | None:intergenic | 50.0% | |
TGCGTCTCTGCGAATCACTT+TGG | + | chr6_2:79926440-79926459 | None:intergenic | 50.0% | |
AGACGCATCAAGAGAGCAAG+TGG | - | chr6_2:79926453-79926472 | Msa0930820:intron | 50.0% | |
TATCACTAGGGTAACTCCCC+TGG | + | chr6_2:79926833-79926852 | None:intergenic | 50.0% | |
! | GGAAGCACGTCTCTTGTACA+TGG | + | chr6_2:79927034-79927053 | None:intergenic | 50.0% |
AAGGTCTCCAGATCCAGCTG+TGG | + | chr6_2:79923812-79923831 | None:intergenic | 55.0% | |
GCTGGATCTGGAGACCTTGA+TGG | - | chr6_2:79923814-79923833 | Msa0930820:three_prime_UTR | 55.0% | |
CAACTTACAAACCTCGGGCC+AGG | + | chr6_2:79924675-79924694 | None:intergenic | 55.0% | |
TGGACTGCGGCAGCATATAG+GGG | + | chr6_2:79924719-79924738 | None:intergenic | 55.0% | |
CTTGGACTGCGGCAGCATAT+AGG | + | chr6_2:79924721-79924740 | None:intergenic | 55.0% | |
TGCCGCAGTCCAAGATCACT+TGG | - | chr6_2:79924727-79924746 | Msa0930820:CDS | 55.0% | |
CTTCACATGGCTACGCGGAA+AGG | - | chr6_2:79925025-79925044 | Msa0930820:intron | 55.0% | |
GAGAACTCGTGGAACGTACG+AGG | + | chr6_2:79925405-79925424 | None:intergenic | 55.0% | |
!!! | TTGCACGTGCGGCGCTTTTT+TGG | - | chr6_2:79926284-79926303 | Msa0930820:intron | 55.0% |
GCAGCTAAGCGTGGCCATCT+TGG | - | chr6_2:79924081-79924100 | Msa0930820:CDS | 60.0% | |
! | GATTTTGTGTGCCTGGCCCG+AGG | - | chr6_2:79924661-79924680 | Msa0930820:CDS | 60.0% |
TGCGGCAGCATATAGGGGAC+TGG | + | chr6_2:79924714-79924733 | None:intergenic | 60.0% | |
CCGCGTAGCCATGTGAAGAG+CGG | + | chr6_2:79925023-79925042 | None:intergenic | 60.0% | |
CCGCTCTTCACATGGCTACG+CGG | - | chr6_2:79925020-79925039 | Msa0930820:intron | 60.0% | |
ACATGGCTACGCGGAAAGGC+CGG | - | chr6_2:79925029-79925048 | Msa0930820:intron | 60.0% | |
GCTGCTTGTGCTTGCACGTG+CGG | - | chr6_2:79926273-79926292 | Msa0930820:intron | 60.0% | |
TACGCGGAAAGGCCGGTCAC+AGG | - | chr6_2:79925036-79925055 | Msa0930820:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_2 | gene | 79923510 | 79927056 | 79923510 | ID=Msa0930820;Name=Msa0930820 |
chr6_2 | mRNA | 79923510 | 79927056 | 79923510 | ID=Msa0930820-mRNA-1;Parent=Msa0930820;Name=Msa0930820-mRNA-1;_AED=0.02;_eAED=0.02;_QI=253|1|1|1|1|1|3|493|540 |
chr6_2 | exon | 79923510 | 79924875 | 79923510 | ID=Msa0930820-mRNA-1:exon:13968;Parent=Msa0930820-mRNA-1 |
chr6_2 | exon | 79925509 | 79925918 | 79925509 | ID=Msa0930820-mRNA-1:exon:13967;Parent=Msa0930820-mRNA-1 |
chr6_2 | exon | 79926464 | 79927056 | 79926464 | ID=Msa0930820-mRNA-1:exon:13966;Parent=Msa0930820-mRNA-1 |
chr6_2 | five_prime_UTR | 79926804 | 79927056 | 79926804 | ID=Msa0930820-mRNA-1:five_prime_utr;Parent=Msa0930820-mRNA-1 |
chr6_2 | CDS | 79926464 | 79926803 | 79926464 | ID=Msa0930820-mRNA-1:cds;Parent=Msa0930820-mRNA-1 |
chr6_2 | CDS | 79925509 | 79925918 | 79925509 | ID=Msa0930820-mRNA-1:cds;Parent=Msa0930820-mRNA-1 |
chr6_2 | CDS | 79924003 | 79924875 | 79924003 | ID=Msa0930820-mRNA-1:cds;Parent=Msa0930820-mRNA-1 |
chr6_2 | three_prime_UTR | 79923510 | 79924002 | 79923510 | ID=Msa0930820-mRNA-1:three_prime_utr;Parent=Msa0930820-mRNA-1 |
Gene Sequence |
Protein sequence |