Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0692930 | XP_024638145.1 | 96.795 | 468 | 14 | 1 | 1 | 467 | 1 | 468 | 0.0 | 918 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0692930 | sp|Q9FME2|NTF2_ARATH | 38.703 | 478 | 227 | 14 | 1 | 452 | 1 | 438 | 3.79e-74 | 243 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0692930 | G7JHJ0 | 96.795 | 468 | 14 | 1 | 1 | 467 | 1 | 468 | 0.0 | 918 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0610380 | Msa0692930 | 0.883143 | 5.759250e-71 | -8.615850e-47 |
| Msa0650910 | Msa0692930 | 0.890269 | 1.148133e-73 | -8.615850e-47 |
| Msa0692850 | Msa0692930 | 0.854655 | 1.065224e-61 | -8.615850e-47 |
| Msa0692930 | Msa1084130 | 0.800360 | 1.495110e-48 | -8.615850e-47 |
| Msa0692930 | Msa1403520 | 0.807199 | 5.681215e-50 | -8.615850e-47 |
| Msa0692930 | Msa1465890 | 0.802013 | 6.860564e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0692930 | MtrunA17_Chr4g0043211 | 96.795 | 468 | 14 | 1 | 1 | 467 | 1 | 468 | 0.0 | 918 |
| Msa0692930 | MtrunA17_Chr7g0219091 | 42.654 | 422 | 181 | 13 | 14 | 397 | 1 | 399 | 4.41e-86 | 271 |
| Msa0692930 | MtrunA17_Chr7g0235151 | 38.446 | 489 | 239 | 18 | 1 | 458 | 1 | 458 | 3.05e-85 | 271 |
| Msa0692930 | MtrunA17_Chr4g0061541 | 43.669 | 387 | 177 | 13 | 1 | 371 | 3 | 364 | 3.92e-80 | 253 |
| Msa0692930 | MtrunA17_Chr7g0262051 | 30.591 | 474 | 240 | 20 | 11 | 434 | 9 | 443 | 1.18e-40 | 151 |
| Msa0692930 | MtrunA17_Chr1g0168741 | 28.893 | 488 | 270 | 18 | 11 | 452 | 10 | 466 | 4.54e-39 | 147 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0692930 | AT3G25150.1 | 37.736 | 424 | 223 | 10 | 3 | 413 | 9 | 404 | 1.08e-81 | 261 |
| Msa0692930 | AT3G25150.2 | 37.736 | 424 | 223 | 10 | 3 | 413 | 108 | 503 | 1.28e-80 | 261 |
| Msa0692930 | AT1G13730.2 | 39.952 | 413 | 180 | 12 | 15 | 403 | 15 | 383 | 4.86e-78 | 250 |
| Msa0692930 | AT1G13730.1 | 39.952 | 413 | 180 | 12 | 15 | 403 | 15 | 383 | 4.86e-78 | 250 |
| Msa0692930 | AT2G03640.2 | 36.285 | 463 | 211 | 16 | 13 | 445 | 13 | 421 | 4.08e-76 | 244 |
| Msa0692930 | AT2G03640.5 | 35.853 | 463 | 212 | 16 | 13 | 445 | 13 | 420 | 1.43e-75 | 243 |
| Msa0692930 | AT2G03640.1 | 35.853 | 463 | 212 | 16 | 13 | 445 | 13 | 420 | 1.43e-75 | 243 |
| Msa0692930 | AT2G03640.3 | 35.853 | 463 | 212 | 16 | 13 | 445 | 13 | 420 | 1.43e-75 | 243 |
| Msa0692930 | AT5G60980.4 | 38.784 | 477 | 227 | 14 | 1 | 452 | 1 | 437 | 2.67e-75 | 244 |
| Msa0692930 | AT5G60980.1 | 38.784 | 477 | 227 | 14 | 1 | 452 | 1 | 437 | 2.67e-75 | 244 |
| Msa0692930 | AT5G60980.2 | 38.703 | 478 | 227 | 14 | 1 | 452 | 1 | 438 | 3.85e-75 | 243 |
| Msa0692930 | AT5G60980.3 | 38.703 | 478 | 227 | 14 | 1 | 452 | 1 | 438 | 3.85e-75 | 243 |
| Msa0692930 | AT2G03640.4 | 34.433 | 485 | 223 | 17 | 13 | 454 | 13 | 445 | 1.20e-71 | 234 |
| Msa0692930 | AT1G69250.1 | 34.590 | 451 | 226 | 15 | 10 | 445 | 8 | 404 | 1.02e-65 | 218 |
| Msa0692930 | AT1G69250.2 | 34.637 | 358 | 184 | 10 | 9 | 357 | 7 | 323 | 9.11e-51 | 177 |
| Msa0692930 | AT5G48650.1 | 30.872 | 447 | 224 | 15 | 15 | 411 | 16 | 427 | 1.79e-46 | 167 |
| Msa0692930 | AT3G07250.1 | 29.024 | 410 | 242 | 16 | 10 | 413 | 5 | 371 | 1.14e-28 | 120 |
| Msa0692930 | AT3G55540.1 | 37.692 | 130 | 75 | 4 | 11 | 134 | 28 | 157 | 3.48e-17 | 83.2 |
| Msa0692930 | AT5G43960.1 | 36.090 | 133 | 79 | 3 | 1 | 133 | 1 | 127 | 2.72e-15 | 78.2 |
| Msa0692930 | AT5G43960.1 | 42.308 | 78 | 41 | 2 | 315 | 389 | 317 | 393 | 1.38e-12 | 70.1 |
| Msa0692930 | AT5G43960.2 | 42.308 | 78 | 41 | 2 | 315 | 389 | 258 | 334 | 1.27e-12 | 69.7 |
Find 154 sgRNAs with CRISPR-Local
Find 306 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTGCTTCGCCCGGCATTC+TGG | 0.150633 | 4_4:+61693846 | None:intergenic |
| TTGAATACCATCACGTTTAA+TGG | 0.154706 | 4_4:+61694716 | None:intergenic |
| TTACAACAGGGGTCTTGTTT+TGG | 0.272474 | 4_4:-61694597 | Msa0692930:intron |
| ATACAGTAGGTAAACAAAAT+TGG | 0.277251 | 4_4:+61693558 | None:intergenic |
| TTGTTAGGGGCTGGTACTTC+AGG | 0.280465 | 4_4:+61694973 | None:intergenic |
| ACTTTCTAGTATGATTGATT+TGG | 0.283145 | 4_4:-61693532 | Msa0692930:three_prime_UTR |
| CCAGGCTCGGGTGTAATAAT+AGG | 0.285575 | 4_4:+61695785 | None:intergenic |
| CTCTCAAGTACACAAGCTTT+AGG | 0.286875 | 4_4:-61696048 | Msa0692930:CDS |
| TCCAATGGAATGTCATTGTT+AGG | 0.306814 | 4_4:+61694958 | None:intergenic |
| GACTCTTTAACATGAATAAC+AGG | 0.308447 | 4_4:+61695271 | None:intergenic |
| GGCAACTTTGGTGGCGGTCG+TGG | 0.314322 | 4_4:-61693935 | Msa0692930:CDS |
| GATCGGGCTTTCAAGAAATT+CGG | 0.315044 | 4_4:-61694741 | Msa0692930:CDS |
| GAAATAAGAAGAGATAAGTA+TGG | 0.322544 | 4_4:+61693591 | None:intergenic |
| AGTTATCATTTCTGTCATTT+CGG | 0.333938 | 4_4:+61693969 | None:intergenic |
| GTAGTGACTGGCTGCTTGAC+TGG | 0.341774 | 4_4:-61695971 | Msa0692930:CDS |
| CTTGCCTCTCCTTTCTTCAA+TGG | 0.344924 | 4_4:+61694260 | None:intergenic |
| GCAACTTTGGTGGCGGTCGT+GGG | 0.345091 | 4_4:-61693934 | Msa0692930:CDS |
| ATCGGGCTTTCAAGAAATTC+GGG | 0.365604 | 4_4:-61694740 | Msa0692930:CDS |
| GTTGGGGTTTGAACTGCTTC+AGG | 0.368212 | 4_4:+61697067 | None:intergenic |
| TTCTGCTCCCTTCCATTTGA+GGG | 0.368492 | 4_4:-61695049 | Msa0692930:CDS |
| TCTCAAGTACACAAGCTTTA+GGG | 0.368515 | 4_4:-61696047 | Msa0692930:CDS |
| CTTTCATCAGCATCATTTGC+TGG | 0.371219 | 4_4:+61695821 | None:intergenic |
| TGAATACCATCACGTTTAAT+GGG | 0.380463 | 4_4:+61694717 | None:intergenic |
| CAACAAGAATGGTATATAAC+TGG | 0.380768 | 4_4:+61693503 | None:intergenic |
| TGAGTGGGTGGAATGACTTC+AGG | 0.384425 | 4_4:+61695427 | None:intergenic |
| TAGTATGATTGATTTGGAAT+TGG | 0.388274 | 4_4:-61693526 | Msa0692930:three_prime_UTR |
| GCTCAGCCTTCATATAATAA+TGG | 0.390830 | 4_4:-61696004 | Msa0692930:CDS |
| ATTCTGCTCCCTTCCATTTG+AGG | 0.397665 | 4_4:-61695050 | Msa0692930:CDS |
| CTACGGTTGTCCAACATAAC+AGG | 0.397866 | 4_4:+61694288 | None:intergenic |
| GTCATGGTACCATCTTCTTC+AGG | 0.399954 | 4_4:+61696938 | None:intergenic |
| TGCCAACCATCTGAGAGGTT+GGG | 0.401347 | 4_4:+61697050 | None:intergenic |
| CTTAGTAGATAGCGGCATCT+AGG | 0.403558 | 4_4:-61693705 | Msa0692930:three_prime_UTR |
| CCAATGGAATGTCATTGTTA+GGG | 0.408231 | 4_4:+61694959 | None:intergenic |
| ATGACAGAAATGATAACTTC+AGG | 0.408965 | 4_4:-61693964 | Msa0692930:CDS |
| TGGAGTATCCTCCTGTGTAT+TGG | 0.425271 | 4_4:+61695195 | None:intergenic |
| TGCTCTACTGTTGCACTCAT+AGG | 0.427103 | 4_4:+61694768 | None:intergenic |
| AAGTCATCATGTTAAGGAAC+TGG | 0.428039 | 4_4:-61695248 | Msa0692930:CDS |
| AGGGGTCGTGGCAACTTTGG+TGG | 0.428428 | 4_4:-61693944 | Msa0692930:CDS |
| AGCATCTCCATTGCTTCGCC+CGG | 0.432821 | 4_4:+61693838 | None:intergenic |
| GGCCTCTCCTCCTGTTATGT+TGG | 0.432878 | 4_4:-61694298 | Msa0692930:CDS |
| TACTTGGATATTAATAGTAT+AGG | 0.435072 | 4_4:-61693432 | Msa0692930:three_prime_UTR |
| GAGAGGCGAGGTGAGTTCTC+TGG | 0.435619 | 4_4:-61693884 | Msa0692930:CDS |
| TAAAACCTATGAACCTGATC+CGG | 0.440830 | 4_4:+61696986 | None:intergenic |
| AACTTTGGTGGCGGTCGTGG+GGG | 0.442248 | 4_4:-61693932 | Msa0692930:CDS |
| AGCAACTTTCTCAATGCTTG+TGG | 0.444743 | 4_4:+61695219 | None:intergenic |
| ATAACTTTCTTCAACAAGAA+TGG | 0.444769 | 4_4:+61693492 | None:intergenic |
| CTCAATTCTGCACCGCGACC+CGG | 0.446115 | 4_4:-61697005 | Msa0692930:CDS |
| CTCGAGGAAGCCAGAATGCC+GGG | 0.447013 | 4_4:-61693856 | Msa0692930:CDS |
| GGGTGCACAGCTGGTTTAGC+AGG | 0.452216 | 4_4:+61695021 | None:intergenic |
| GAGTGCAACAGTAGAGCAAT+TGG | 0.452380 | 4_4:-61694763 | Msa0692930:CDS |
| ATGAGTGAGTTTGAGAGAGT+TGG | 0.456000 | 4_4:+61697968 | None:intergenic |
| ATGACTTCAGGAACATGAAC+AGG | 0.457541 | 4_4:+61695439 | None:intergenic |
| TCTGCACCGCGACCCGGATC+AGG | 0.457710 | 4_4:-61696999 | Msa0692930:CDS |
| GCCAACCATCTGAGAGGTTG+GGG | 0.457802 | 4_4:+61697051 | None:intergenic |
| GCAACTTTCTCAATGCTTGT+GGG | 0.457817 | 4_4:+61695220 | None:intergenic |
| GCACTTTATTGAACTTTCAC+TGG | 0.460254 | 4_4:+61693764 | None:intergenic |
| GCGACCCGGATCAGGTTCAT+AGG | 0.461475 | 4_4:-61696991 | Msa0692930:CDS |
| TTCAGGGGTCGTGGCAACTT+TGG | 0.464817 | 4_4:-61693947 | Msa0692930:CDS |
| AATACATGCAAATTTATACT+TGG | 0.468300 | 4_4:-61693448 | Msa0692930:three_prime_UTR |
| CAACTTTGGTGGCGGTCGTG+GGG | 0.470500 | 4_4:-61693933 | Msa0692930:CDS |
| GTGAGCTTGCCACTGGAGAA+TGG | 0.479307 | 4_4:-61695322 | Msa0692930:CDS |
| GGGAGCAGAATTATCTTTCA+AGG | 0.480148 | 4_4:+61695062 | None:intergenic |
| ATCCCTTGTCCTGTGGAGCC+AGG | 0.480771 | 4_4:+61695909 | None:intergenic |
| TGACAGAAATGATAACTTCA+GGG | 0.488557 | 4_4:-61693963 | Msa0692930:CDS |
| CCTCCATTCTGATAACTCCT+TGG | 0.489553 | 4_4:+61693812 | None:intergenic |
| CTTGGTAATTGAGAGGCAAC+GGG | 0.490941 | 4_4:-61693733 | Msa0692930:three_prime_UTR |
| TTGCCAACCATCTGAGAGGT+TGG | 0.492618 | 4_4:+61697049 | None:intergenic |
| GTAGACTTTCCATTGAAGAA+AGG | 0.497093 | 4_4:-61694269 | Msa0692930:CDS |
| CCTCGAGGAAGCCAGAATGC+CGG | 0.500525 | 4_4:-61693857 | Msa0692930:CDS |
| TTAGTAGATAGCGGCATCTA+GGG | 0.502425 | 4_4:-61693704 | Msa0692930:three_prime_UTR |
| AGAGTCAAGTCATCATGTTA+AGG | 0.503478 | 4_4:-61695254 | Msa0692930:CDS |
| TTTCTTCAATGGAAAGTCTA+CGG | 0.505725 | 4_4:+61694271 | None:intergenic |
| TAGCAGGAGAAGCCCTCAAA+TGG | 0.506751 | 4_4:+61695037 | None:intergenic |
| CAAAGAAGTGAGCTTGCCAC+TGG | 0.508017 | 4_4:-61695329 | Msa0692930:CDS |
| ATCACTCCATTATTATATGA+AGG | 0.512169 | 4_4:+61695998 | None:intergenic |
| AACAGTAGAGCAATTGGATC+GGG | 0.513751 | 4_4:-61694757 | Msa0692930:CDS |
| TTTCCTGGCTCCACAGGACA+AGG | 0.514354 | 4_4:-61695912 | Msa0692930:CDS |
| ACACGGGGTGGGTGCACAGC+TGG | 0.516979 | 4_4:+61695012 | None:intergenic |
| AAAACCTATGAACCTGATCC+GGG | 0.522821 | 4_4:+61696987 | None:intergenic |
| ACATTGAAACTGTGTGAGAA+TGG | 0.528893 | 4_4:+61693406 | None:intergenic |
| GGAATGTCATTGTTAGGGGC+TGG | 0.529179 | 4_4:+61694964 | None:intergenic |
| CAGAATGCCGGGCGAAGCAA+TGG | 0.530259 | 4_4:-61693845 | Msa0692930:CDS |
| AATGATAACTTCAGGGGTCG+TGG | 0.530752 | 4_4:-61693956 | Msa0692930:CDS |
| TGATGTGATTTACCAGGCTC+GGG | 0.533955 | 4_4:+61695773 | None:intergenic |
| TCTTGGTAATTGAGAGGCAA+CGG | 0.535785 | 4_4:-61693734 | Msa0692930:three_prime_UTR |
| TGAGTGAGTTTGAGAGAGTT+GGG | 0.538091 | 4_4:+61697969 | None:intergenic |
| GGTGTAATAATAGGTTCTGA+TGG | 0.542317 | 4_4:+61695794 | None:intergenic |
| AGCAGCCACGCTATGTACAC+GGG | 0.544845 | 4_4:+61694996 | None:intergenic |
| CAATGGAATGTCATTGTTAG+GGG | 0.545943 | 4_4:+61694960 | None:intergenic |
| GAGCAGCCACGCTATGTACA+CGG | 0.550269 | 4_4:+61694995 | None:intergenic |
| GTACACAAGCTTTAGGGTGG+AGG | 0.551400 | 4_4:-61696041 | Msa0692930:CDS |
| CCTATTATTACACCCGAGCC+TGG | 0.553187 | 4_4:-61695785 | Msa0692930:intron |
| GCACCTCCTTGTTGAAGCGA+TGG | 0.553570 | 4_4:+61697902 | None:intergenic |
| TTCATATAATAATGGAGTGA+TGG | 0.556967 | 4_4:-61695996 | Msa0692930:CDS |
| ATCATTTGCTGGCACAGACT+CGG | 0.560650 | 4_4:+61695832 | None:intergenic |
| GCAATAACAGTTTGAGTGGG+TGG | 0.564301 | 4_4:+61695373 | None:intergenic |
| AGGAGAAGCCCTCAAATGGA+AGG | 0.565351 | 4_4:+61695041 | None:intergenic |
| CTTTATTGAACTTTCACTGG+TGG | 0.566362 | 4_4:+61693767 | None:intergenic |
| ATCAGCAATAACAGTTTGAG+TGG | 0.569394 | 4_4:+61695369 | None:intergenic |
| ACCCCAACCTCTCAGATGGT+TGG | 0.570317 | 4_4:-61697052 | Msa0692930:CDS |
| TATGAACCTGATCCGGGTCG+CGG | 0.578182 | 4_4:+61696993 | None:intergenic |
| TTCGGGCCCATTAAACGTGA+TGG | 0.578283 | 4_4:-61694723 | Msa0692930:CDS |
| ATCTCTCCATCGCTTCAACA+AGG | 0.583163 | 4_4:-61697908 | Msa0692930:five_prime_UTR |
| CCACGCTATGTACACGGGGT+GGG | 0.588838 | 4_4:+61695001 | None:intergenic |
| CCCTAACAATGACATTCCAT+TGG | 0.588915 | 4_4:-61694959 | Msa0692930:CDS |
| GGAGTGATGGTTGTAGTGAC+TGG | 0.590921 | 4_4:-61695983 | Msa0692930:CDS |
| GTGATGTGATTTACCAGGCT+CGG | 0.591078 | 4_4:+61695772 | None:intergenic |
| GGAACAACAGTTTGAGTGGG+TGG | 0.592094 | 4_4:+61695415 | None:intergenic |
| AGGAGTTATCAGAATGGAGG+AGG | 0.592308 | 4_4:-61693809 | Msa0692930:CDS |
| AAAACTCACAATGGATGCAA+AGG | 0.592394 | 4_4:+61695165 | None:intergenic |
| AGAAATACTCCATACCTCTA+GGG | 0.593229 | 4_4:+61694536 | None:intergenic |
| GCCACGCTATGTACACGGGG+TGG | 0.593318 | 4_4:+61695000 | None:intergenic |
| GGAATAACAGTTTGAGCGGG+TGG | 0.603043 | 4_4:+61695394 | None:intergenic |
| ATGAGTCGACCTGAAGAAGA+TGG | 0.603043 | 4_4:-61696947 | Msa0692930:CDS |
| TCAAACCCCAACCTCTCAGA+TGG | 0.604241 | 4_4:-61697056 | Msa0692930:CDS |
| CAACAGTAGAGCAATTGGAT+CGG | 0.605783 | 4_4:-61694758 | Msa0692930:CDS |
| GGGTGGAACAACAGTTTGAG+TGG | 0.606283 | 4_4:+61695411 | None:intergenic |
| GGTCGTGGCAACTTTGGTGG+CGG | 0.613016 | 4_4:-61693941 | Msa0692930:CDS |
| GAAAGTTGCTTCCAATACAC+AGG | 0.613031 | 4_4:-61695206 | Msa0692930:CDS |
| GTCCAACATAACAGGAGGAG+AGG | 0.613592 | 4_4:+61694296 | None:intergenic |
| CATTCTGGCTTCCTCGAGGT+CGG | 0.613722 | 4_4:+61693861 | None:intergenic |
| TGATATTCCTCAGGGCGTAG+TGG | 0.616601 | 4_4:-61693995 | Msa0692930:intron |
| GGTGGAATAACAGTTTGAGC+GGG | 0.620085 | 4_4:+61695391 | None:intergenic |
| CCCACCCCGTGTACATAGCG+TGG | 0.621193 | 4_4:-61695001 | Msa0692930:CDS |
| ACATAGAATCCCTTGTCCTG+TGG | 0.623112 | 4_4:+61695902 | None:intergenic |
| TTCAATGCAAAGTGCCCTAG+AGG | 0.624661 | 4_4:-61694550 | Msa0692930:intron |
| GCAATGGAGATGCTGTGCCA+AGG | 0.625535 | 4_4:-61693829 | Msa0692930:CDS |
| GGAGAAGCCCTCAAATGGAA+GGG | 0.627450 | 4_4:+61695042 | None:intergenic |
| GAGTTCTCTGGCCGACCTCG+AGG | 0.629310 | 4_4:-61693872 | Msa0692930:CDS |
| TTCCTGGCTCCACAGGACAA+GGG | 0.632977 | 4_4:-61695911 | Msa0692930:CDS |
| AGTGGTGGTGACAGTTGTCA+TGG | 0.632992 | 4_4:+61696922 | None:intergenic |
| CTTTCCATTGAAGAAAGGAG+AGG | 0.636097 | 4_4:-61694264 | Msa0692930:intron |
| TATTCAAGTTAGAAGTAACA+AGG | 0.636666 | 4_4:-61694700 | Msa0692930:intron |
| GGGTGGAATAACAGTTTGAG+CGG | 0.639063 | 4_4:+61695390 | None:intergenic |
| GAAAAGAATAATGAGAACGC+AGG | 0.639827 | 4_4:-61694937 | Msa0692930:intron |
| GTGCCAAGGAGTTATCAGAA+TGG | 0.640821 | 4_4:-61693815 | Msa0692930:CDS |
| CAAGTACACAAGCTTTAGGG+TGG | 0.641102 | 4_4:-61696044 | Msa0692930:CDS |
| CCAAGGAGTTATCAGAATGG+AGG | 0.642210 | 4_4:-61693812 | Msa0692930:CDS |
| GACTCATGACACTTGAGTCG+TGG | 0.645542 | 4_4:+61696963 | None:intergenic |
| GAAGAAAGTTATGTTCCTTG+TGG | 0.649015 | 4_4:-61693481 | Msa0692930:three_prime_UTR |
| GGTGGAACAACAGTTTGAGT+GGG | 0.654456 | 4_4:+61695412 | None:intergenic |
| ACTAGAAAGTTAGATACAGT+AGG | 0.656599 | 4_4:+61693545 | None:intergenic |
| AAAGATCACAGAAACTACAA+AGG | 0.657053 | 4_4:+61693651 | None:intergenic |
| GACAGAAATGATAACTTCAG+GGG | 0.659187 | 4_4:-61693962 | Msa0692930:CDS |
| AAAGAGAGAAACAAAGAATG+CGG | 0.659823 | 4_4:+61697942 | None:intergenic |
| TCAGCAATAACAGTTTGAGT+GGG | 0.664497 | 4_4:+61695370 | None:intergenic |
| TTGTCATGTTGTAGAGATGG+CGG | 0.678132 | 4_4:-61697092 | Msa0692930:intron |
| CCGGCATTCTGGCTTCCTCG+AGG | 0.684477 | 4_4:+61693857 | None:intergenic |
| CGGTTGTCCAACATAACAGG+AGG | 0.684822 | 4_4:+61694291 | None:intergenic |
| TCTCCATCGCTTCAACAAGG+AGG | 0.685400 | 4_4:-61697905 | Msa0692930:intron |
| AGTTGCTTCCAATACACAGG+AGG | 0.687249 | 4_4:-61695203 | Msa0692930:CDS |
| AGCATTGCCAACCATCTGAG+AGG | 0.707622 | 4_4:+61697045 | None:intergenic |
| GCAGCCACGCTATGTACACG+GGG | 0.732763 | 4_4:+61694997 | None:intergenic |
| GTATTAATAAACATACCACA+AGG | 0.736158 | 4_4:+61693466 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATAAAACAATAAAGAT+TGG | + | chr4_4:61693690-61693709 | None:intergenic | 10.0% |
| !! | GATAAAATAAATAGTTTAAT+TGG | + | chr4_4:61694190-61694209 | None:intergenic | 10.0% |
| !!! | TATTTTTATTGTTTTAAATG+TGG | - | chr4_4:61695926-61695945 | Msa0692930:CDS | 10.0% |
| !!! | ATTTTTATTGTTTTAAATGT+GGG | - | chr4_4:61695927-61695946 | Msa0692930:CDS | 10.0% |
| !! | ATTTCTTTATTAAATCATTA+AGG | - | chr4_4:61697023-61697042 | Msa0692930:CDS | 10.0% |
| !!! | ATTTTTTTATGTATTATTTC+AGG | - | chr4_4:61697105-61697124 | Msa0692930:intron | 10.0% |
| !! | AAAAAAAATTCATTAAACCT+GGG | + | chr4_4:61693916-61693935 | None:intergenic | 15.0% |
| !! | AAAAAAAAATTCATTAAACC+TGG | + | chr4_4:61693917-61693936 | None:intergenic | 15.0% |
| !! | AATAATATAAGAGAATGTTA+TGG | - | chr4_4:61694874-61694893 | Msa0692930:intron | 15.0% |
| !!! | TGATAACTTTCAATATTTTT+GGG | + | chr4_4:61695129-61695148 | None:intergenic | 15.0% |
| !!! | ATGATAACTTTCAATATTTT+TGG | + | chr4_4:61695130-61695149 | None:intergenic | 15.0% |
| !! | AAAAACGAAATCAAATTAAA+TGG | + | chr4_4:61695889-61695908 | None:intergenic | 15.0% |
| !! | AATAAAAATATTCCTATAAG+AGG | + | chr4_4:61695916-61695935 | None:intergenic | 15.0% |
| !!! | GTATAAAGTCTTATTTTAAA+AGG | - | chr4_4:61696564-61696583 | Msa0692930:intron | 15.0% |
| !!! | TTTATTCTTGTGATTTTCAA+TGG | - | chr4_4:61693588-61693607 | Msa0692930:three_prime_UTR | 20.0% |
| !!! | TGATTTTCAATGGTTATTTA+GGG | - | chr4_4:61693598-61693617 | Msa0692930:three_prime_UTR | 20.0% |
| !!! | TAACTTTGTATTTGAGATTT+AGG | - | chr4_4:61693630-61693649 | Msa0692930:three_prime_UTR | 20.0% |
| !!! | AACTTTGTATTTGAGATTTA+GGG | - | chr4_4:61693631-61693650 | Msa0692930:three_prime_UTR | 20.0% |
| !! | AACATTCAAAAACTAAAAAC+CGG | + | chr4_4:61693744-61693763 | None:intergenic | 20.0% |
| !!! | ATACATGACATTTGTTTTAT+CGG | - | chr4_4:61693770-61693789 | Msa0692930:CDS | 20.0% |
| !!! | AAATTCAAGACATTTGTTTT+AGG | - | chr4_4:61694026-61694045 | Msa0692930:intron | 20.0% |
| !!! | TAAACTATTTATTTTATCGG+TGG | - | chr4_4:61694192-61694211 | Msa0692930:intron | 20.0% |
| !!! | TTTTGATTTTGAAAGTAACT+TGG | - | chr4_4:61694286-61694305 | Msa0692930:CDS | 20.0% |
| !! | CTAGTTATAACATATATATG+CGG | - | chr4_4:61694555-61694574 | Msa0692930:CDS | 20.0% |
| !!! | TATTTTCAATACCCTTTTTA+CGG | - | chr4_4:61695195-61695214 | Msa0692930:CDS | 20.0% |
| !!! | TTAATTTGAGAAAGTTTTTG+TGG | - | chr4_4:61695682-61695701 | Msa0692930:intron | 20.0% |
| !! | TAAATAAGTAAAACTCACAA+TGG | + | chr4_4:61696271-61696290 | None:intergenic | 20.0% |
| !! | TTACTTTACTATTACTCTTA+AGG | - | chr4_4:61696521-61696540 | Msa0692930:intron | 20.0% |
| !!! | TTGGGTTTTATAAATCTTTA+TGG | - | chr4_4:61696952-61696971 | Msa0692930:CDS | 20.0% |
| !!! | TGGGTTTTATAAATCTTTAT+GGG | - | chr4_4:61696953-61696972 | Msa0692930:CDS | 20.0% |
| !! | CAAATTTAACAAGAGAAATA+TGG | + | chr4_4:61697194-61697213 | None:intergenic | 20.0% |
| !! | ACAATATACAAGTAATAGAA+TGG | + | chr4_4:61697383-61697402 | None:intergenic | 20.0% |
| !! | AATACATGCAAATTTATACT+TGG | - | chr4_4:61697976-61697995 | Msa0692930:five_prime_UTR | 20.0% |
| !! | TACTTGGATATTAATAGTAT+AGG | - | chr4_4:61697992-61698011 | Msa0692930:five_prime_UTR | 20.0% |
| !! | GTGATTTTCAATGGTTATTT+AGG | - | chr4_4:61693597-61693616 | Msa0692930:three_prime_UTR | 25.0% |
| !!! | TGTTTTAATTGTTGAAGTTC+CGG | - | chr4_4:61693722-61693741 | Msa0692930:three_prime_UTR | 25.0% |
| !!! | TTGAATGTTTTTGTGTTACA+TGG | - | chr4_4:61693978-61693997 | Msa0692930:CDS | 25.0% |
| ! | TTAGGTTAGGTCATATAAAT+TGG | - | chr4_4:61694001-61694020 | Msa0692930:intron | 25.0% |
| !!! | ACATTTGTTTTAGGATTTGA+AGG | - | chr4_4:61694035-61694054 | Msa0692930:intron | 25.0% |
| !! | ATGTAAAATTTTCACTCTGT+TGG | - | chr4_4:61694158-61694177 | Msa0692930:intron | 25.0% |
| ! | AAATCAAAAACACACAAACA+CGG | + | chr4_4:61694275-61694294 | None:intergenic | 25.0% |
| ! | TGAGACATGAAAATAAAGTA+CGG | + | chr4_4:61694610-61694629 | None:intergenic | 25.0% |
| ! | ACTGCTTGGATTTAAAAAAT+AGG | + | chr4_4:61694754-61694773 | None:intergenic | 25.0% |
| ! | TAAACTAAGCTCATAAGTAT+AGG | + | chr4_4:61694960-61694979 | None:intergenic | 25.0% |
| !!! | ACAATATTTTTGCTACACTT+TGG | - | chr4_4:61695015-61695034 | Msa0692930:CDS | 25.0% |
| ! | TCTATAACGTATTATCATCT+TGG | - | chr4_4:61695070-61695089 | Msa0692930:CDS | 25.0% |
| !! | ATGTTTGGTTGAGTTTATTT+TGG | - | chr4_4:61695227-61695246 | Msa0692930:CDS | 25.0% |
| !!! | TTTATTTTGGTGCACTAATT+CGG | - | chr4_4:61695240-61695259 | Msa0692930:CDS | 25.0% |
| !!! | TATGATCTTTATTTTGATGC+AGG | - | chr4_4:61695332-61695351 | Msa0692930:CDS | 25.0% |
| ! | ATCACTCCATTATTATATGA+AGG | + | chr4_4:61695429-61695448 | None:intergenic | 25.0% |
| !! | TTCATATAATAATGGAGTGA+TGG | - | chr4_4:61695428-61695447 | Msa0692930:CDS | 25.0% |
| ! | ATTTAGCAGTAAATAGCATA+AGG | + | chr4_4:61695858-61695877 | None:intergenic | 25.0% |
| !!! | GATTGCAGAAAAGTTATTTT+TGG | + | chr4_4:61696324-61696343 | None:intergenic | 25.0% |
| !! | TTCTCATTATTCTTTTCCAA+TGG | + | chr4_4:61696484-61696503 | None:intergenic | 25.0% |
| !! | TATTCAAGTTAGAAGTAACA+AGG | - | chr4_4:61696724-61696743 | Msa0692930:intron | 25.0% |
| !! | ATCAATAGTTTTTATCAGCA+AGG | - | chr4_4:61696911-61696930 | Msa0692930:intron | 25.0% |
| !! | AGTTATCATTTCTGTCATTT+CGG | + | chr4_4:61697458-61697477 | None:intergenic | 25.0% |
| !!! | AATAAAGTGCTTCTTTTTCT+TGG | - | chr4_4:61697673-61697692 | Msa0692930:intron | 25.0% |
| ! | GAAATAAGAAGAGATAAGTA+TGG | + | chr4_4:61697836-61697855 | None:intergenic | 25.0% |
| ! | ATACAGTAGGTAAACAAAAT+TGG | + | chr4_4:61697869-61697888 | None:intergenic | 25.0% |
| !! | ACTTTCTAGTATGATTGATT+TGG | - | chr4_4:61697892-61697911 | Msa0692930:intron | 25.0% |
| !!! | TAGTATGATTGATTTGGAAT+TGG | - | chr4_4:61697898-61697917 | Msa0692930:intron | 25.0% |
| ! | ATAACTTTCTTCAACAAGAA+TGG | + | chr4_4:61697935-61697954 | None:intergenic | 25.0% |
| ! | GTATTAATAAACATACCACA+AGG | + | chr4_4:61697961-61697980 | None:intergenic | 25.0% |
| AAAGAGAGAAACAAAGAATG+CGG | + | chr4_4:61693485-61693504 | None:intergenic | 30.0% | |
| TGTTTGTCGTGTATTATTTG+AGG | - | chr4_4:61693820-61693839 | Msa0692930:CDS | 30.0% | |
| !! | TGTTTTTGTGTTACATGGTT+AGG | - | chr4_4:61693983-61694002 | Msa0692930:CDS | 30.0% |
| ! | AGTGGATTTAGATTGAATGT+CGG | + | chr4_4:61694092-61694111 | None:intergenic | 30.0% |
| !! | AAAGTATTGTGATCTCTCAT+TGG | - | chr4_4:61694129-61694148 | Msa0692930:intron | 30.0% |
| GACAAAAATTCAGTCATCAT+TGG | + | chr4_4:61694231-61694250 | None:intergenic | 30.0% | |
| AATCAAAAACACACAAACAC+GGG | + | chr4_4:61694274-61694293 | None:intergenic | 30.0% | |
| !!! | ATTTTTTGAACTTACTGCAG+TGG | + | chr4_4:61694523-61694542 | None:intergenic | 30.0% |
| ACTGCAGTAAGTTCAAAAAA+TGG | - | chr4_4:61694522-61694541 | Msa0692930:intron | 30.0% | |
| TATATGCGGAAACATATAAG+TGG | - | chr4_4:61694569-61694588 | Msa0692930:CDS | 30.0% | |
| AGTTACGCAATTTACTACTT+TGG | + | chr4_4:61694647-61694666 | None:intergenic | 30.0% | |
| !!! | GTTGTTTTGATGCAATATCA+TGG | + | chr4_4:61694997-61695016 | None:intergenic | 30.0% |
| TAACGTATTATCATCTTGGT+TGG | - | chr4_4:61695074-61695093 | Msa0692930:intron | 30.0% | |
| !!! | CAATATTTTTGGGCTTTCAT+GGG | + | chr4_4:61695119-61695138 | None:intergenic | 30.0% |
| !!! | TCAATATTTTTGGGCTTTCA+TGG | + | chr4_4:61695120-61695139 | None:intergenic | 30.0% |
| ATGAACTTGAACCGTAAAAA+GGG | + | chr4_4:61695209-61695228 | None:intergenic | 30.0% | |
| !!! | TTATTTTGGTGCACTAATTC+GGG | - | chr4_4:61695241-61695260 | Msa0692930:CDS | 30.0% |
| !!! | TCGTTTTTTGTTCCTCTTAT+AGG | - | chr4_4:61695901-61695920 | Msa0692930:CDS | 30.0% |
| GACTCTTTAACATGAATAAC+AGG | + | chr4_4:61696156-61696175 | None:intergenic | 30.0% | |
| TTTCTGCAATCATTTGTTCA+AGG | - | chr4_4:61696333-61696352 | Msa0692930:intron | 30.0% | |
| TGAATACCATCACGTTTAAT+GGG | + | chr4_4:61696710-61696729 | None:intergenic | 30.0% | |
| TTGAATACCATCACGTTTAA+TGG | + | chr4_4:61696711-61696730 | None:intergenic | 30.0% | |
| TGATGTGTAGTTAGTAAACT+AGG | + | chr4_4:61696776-61696795 | None:intergenic | 30.0% | |
| !! | ATGCTTGTTTCTTTTACAAC+AGG | - | chr4_4:61696814-61696833 | Msa0692930:intron | 30.0% |
| !! | TGCTTGTTTCTTTTACAACA+GGG | - | chr4_4:61696815-61696834 | Msa0692930:intron | 30.0% |
| ! | CTGTAAATTGAATGTTGGTT+GGG | - | chr4_4:61696934-61696953 | Msa0692930:CDS | 30.0% |
| ! | TCCTTCTTTCAAACTTTTCA+AGG | - | chr4_4:61696987-61697006 | Msa0692930:CDS | 30.0% |
| ! | CCTTCTTTCAAACTTTTCAA+GGG | - | chr4_4:61696988-61697007 | Msa0692930:CDS | 30.0% |
| !! | CTTCTTTCAAACTTTTCAAG+GGG | - | chr4_4:61696989-61697008 | Msa0692930:CDS | 30.0% |
| ATTCATATGAAGCAAGCAAA+AGG | + | chr4_4:61697087-61697106 | None:intergenic | 30.0% | |
| TTTCTTCAATGGAAAGTCTA+CGG | + | chr4_4:61697156-61697175 | None:intergenic | 30.0% | |
| TAGCAAAATCTGCAGATTAA+AGG | + | chr4_4:61697219-61697238 | None:intergenic | 30.0% | |
| TATACAAGTAATAGAATGGC+AGG | + | chr4_4:61697379-61697398 | None:intergenic | 30.0% | |
| ATGACAGAAATGATAACTTC+AGG | - | chr4_4:61697460-61697479 | Msa0692930:intron | 30.0% | |
| TGACAGAAATGATAACTTCA+GGG | - | chr4_4:61697461-61697480 | Msa0692930:intron | 30.0% | |
| !! | TCTTTTTCTTGGTAATTGAG+AGG | - | chr4_4:61697684-61697703 | Msa0692930:intron | 30.0% |
| !!! | AGGGATTTTGATTTGCATTT+TGG | - | chr4_4:61697739-61697758 | Msa0692930:intron | 30.0% |
| AAAGATCACAGAAACTACAA+AGG | + | chr4_4:61697776-61697795 | None:intergenic | 30.0% | |
| ACTAGAAAGTTAGATACAGT+AGG | + | chr4_4:61697882-61697901 | None:intergenic | 30.0% | |
| CAACAAGAATGGTATATAAC+TGG | + | chr4_4:61697924-61697943 | None:intergenic | 30.0% | |
| !!! | CATGACATTTGTTTTATCGG+TGG | - | chr4_4:61693773-61693792 | Msa0692930:CDS | 35.0% |
| TTAGTGTTTGTGAATTACCC+AGG | - | chr4_4:61693896-61693915 | Msa0692930:CDS | 35.0% | |
| TTGTGTTACATGGTTAGGTT+AGG | - | chr4_4:61693988-61694007 | Msa0692930:intron | 35.0% | |
| TAGGATTTGAAGGATTTGCA+AGG | - | chr4_4:61694045-61694064 | Msa0692930:intron | 35.0% | |
| TGACGACTCTTACTAAATAG+TGG | + | chr4_4:61694110-61694129 | None:intergenic | 35.0% | |
| !! | TTATCGGTGGATTGTATTGA+TGG | - | chr4_4:61694205-61694224 | Msa0692930:intron | 35.0% |
| ATCAAAAACACACAAACACG+GGG | + | chr4_4:61694273-61694292 | None:intergenic | 35.0% | |
| TGTTTGTCATGTTGTAGAGA+TGG | - | chr4_4:61694329-61694348 | Msa0692930:intron | 35.0% | |
| TAAAACCTATGAACCTGATC+CGG | + | chr4_4:61694441-61694460 | None:intergenic | 35.0% | |
| TAAGCACCATAATCAGCATT+AGG | - | chr4_4:61694719-61694738 | Msa0692930:CDS | 35.0% | |
| CAAAGGACAAAGTGCAAATT+TGG | + | chr4_4:61694803-61694822 | None:intergenic | 35.0% | |
| AATACGTTATAGATTTGCCC+AGG | + | chr4_4:61695063-61695082 | None:intergenic | 35.0% | |
| CATGAACTTGAACCGTAAAA+AGG | + | chr4_4:61695210-61695229 | None:intergenic | 35.0% | |
| ! | TTACGGTTCAAGTTCATGTT+TGG | - | chr4_4:61695212-61695231 | Msa0692930:CDS | 35.0% |
| TCTCAAGTACACAAGCTTTA+GGG | - | chr4_4:61695377-61695396 | Msa0692930:CDS | 35.0% | |
| GCTCAGCCTTCATATAATAA+TGG | - | chr4_4:61695420-61695439 | Msa0692930:CDS | 35.0% | |
| ! | GGTGTAATAATAGGTTCTGA+TGG | + | chr4_4:61695633-61695652 | None:intergenic | 35.0% |
| TAGATGTGATGTGATTTACC+AGG | + | chr4_4:61695660-61695679 | None:intergenic | 35.0% | |
| TCAGCAATAACAGTTTGAGT+GGG | + | chr4_4:61696057-61696076 | None:intergenic | 35.0% | |
| ATCAGCAATAACAGTTTGAG+TGG | + | chr4_4:61696058-61696077 | None:intergenic | 35.0% | |
| ! | GATAATTTTCCATTCTCCAG+TGG | + | chr4_4:61696114-61696133 | None:intergenic | 35.0% |
| AGAGTCAAGTCATCATGTTA+AGG | - | chr4_4:61696170-61696189 | Msa0692930:intron | 35.0% | |
| AAGTCATCATGTTAAGGAAC+TGG | - | chr4_4:61696176-61696195 | Msa0692930:intron | 35.0% | |
| !!! | ATGGATGCAAAGGACTTTTT+TGG | + | chr4_4:61696252-61696271 | None:intergenic | 35.0% |
| AAAACTCACAATGGATGCAA+AGG | + | chr4_4:61696262-61696281 | None:intergenic | 35.0% | |
| CAATGGAATGTCATTGTTAG+GGG | + | chr4_4:61696467-61696486 | None:intergenic | 35.0% | |
| CCAATGGAATGTCATTGTTA+GGG | + | chr4_4:61696468-61696487 | None:intergenic | 35.0% | |
| TCCAATGGAATGTCATTGTT+AGG | + | chr4_4:61696469-61696488 | None:intergenic | 35.0% | |
| GAAAAGAATAATGAGAACGC+AGG | - | chr4_4:61696487-61696506 | Msa0692930:intron | 35.0% | |
| GTAGTTAGTAAACTAGGTGT+TGG | + | chr4_4:61696770-61696789 | None:intergenic | 35.0% | |
| !! | GCTTGTTTCTTTTACAACAG+GGG | - | chr4_4:61696816-61696835 | Msa0692930:intron | 35.0% |
| AGAAATACTCCATACCTCTA+GGG | + | chr4_4:61696891-61696910 | None:intergenic | 35.0% | |
| TAGAAATACTCCATACCTCT+AGG | + | chr4_4:61696892-61696911 | None:intergenic | 35.0% | |
| CAAGGCTGTAAATTGAATGT+TGG | - | chr4_4:61696929-61696948 | Msa0692930:CDS | 35.0% | |
| GCTGTAAATTGAATGTTGGT+TGG | - | chr4_4:61696933-61696952 | Msa0692930:CDS | 35.0% | |
| CCCTTGAAAAGTTTGAAAGA+AGG | + | chr4_4:61696991-61697010 | None:intergenic | 35.0% | |
| GTAGACTTTCCATTGAAGAA+AGG | - | chr4_4:61697155-61697174 | Msa0692930:intron | 35.0% | |
| TTACCACAGCTAACAATGAT+AGG | - | chr4_4:61697403-61697422 | Msa0692930:intron | 35.0% | |
| TACCACAGCTAACAATGATA+GGG | - | chr4_4:61697404-61697423 | Msa0692930:intron | 35.0% | |
| GACAGAAATGATAACTTCAG+GGG | - | chr4_4:61697462-61697481 | Msa0692930:intron | 35.0% | |
| CTTTATTGAACTTTCACTGG+TGG | + | chr4_4:61697660-61697679 | None:intergenic | 35.0% | |
| GCACTTTATTGAACTTTCAC+TGG | + | chr4_4:61697663-61697682 | None:intergenic | 35.0% | |
| ! | GGGATTTTCTTAGTAGATAG+CGG | - | chr4_4:61697711-61697730 | Msa0692930:intron | 35.0% |
| GAAGAAAGTTATGTTCCTTG+TGG | - | chr4_4:61697943-61697962 | Msa0692930:five_prime_UTR | 35.0% | |
| TGAGTGAGTTTGAGAGAGTT+GGG | + | chr4_4:61693458-61693477 | None:intergenic | 40.0% | |
| ATGAGTGAGTTTGAGAGAGT+TGG | + | chr4_4:61693459-61693478 | None:intergenic | 40.0% | |
| !! | TTGTTTTATCGGTGGATTCG+AGG | - | chr4_4:61693781-61693800 | Msa0692930:CDS | 40.0% |
| !! | TGTTTTATCGGTGGATTCGA+GGG | - | chr4_4:61693782-61693801 | Msa0692930:CDS | 40.0% |
| TTGTCATGTTGTAGAGATGG+CGG | - | chr4_4:61694332-61694351 | Msa0692930:intron | 40.0% | |
| AAAACCTATGAACCTGATCC+GGG | + | chr4_4:61694440-61694459 | None:intergenic | 40.0% | |
| ! | TTTTGAACTTACTGCAGTGG+TGG | + | chr4_4:61694520-61694539 | None:intergenic | 40.0% |
| ! | CGTCATCCTAATGCTGATTA+TGG | + | chr4_4:61694728-61694747 | None:intergenic | 40.0% |
| GATATCTTCGACTTACTGCT+TGG | + | chr4_4:61694768-61694787 | None:intergenic | 40.0% | |
| CACACAGAGAAAAACAGCAA+AGG | + | chr4_4:61694820-61694839 | None:intergenic | 40.0% | |
| GAAGTGATGAGAGTTGAGTA+GGG | - | chr4_4:61694896-61694915 | Msa0692930:intron | 40.0% | |
| AAGTGATGAGAGTTGAGTAG+GGG | - | chr4_4:61694897-61694916 | Msa0692930:intron | 40.0% | |
| GACTGTGAGCATAAGCATTA+TGG | - | chr4_4:61694928-61694947 | Msa0692930:intron | 40.0% | |
| TGATGCAATATCATGGCACA+AGG | + | chr4_4:61694990-61695009 | None:intergenic | 40.0% | |
| !! | AAACCTTAACACTGGTTCCT+GGG | - | chr4_4:61695043-61695062 | Msa0692930:CDS | 40.0% |
| CTCTCAAGTACACAAGCTTT+AGG | - | chr4_4:61695376-61695395 | Msa0692930:CDS | 40.0% | |
| CTTTCATCAGCATCATTTGC+TGG | + | chr4_4:61695606-61695625 | None:intergenic | 40.0% | |
| GCTCTGTAGATTCAAGCATA+AGG | + | chr4_4:61695820-61695839 | None:intergenic | 40.0% | |
| ATGACTTCAGGAACATGAAC+AGG | + | chr4_4:61695988-61696007 | None:intergenic | 40.0% | |
| GCAACTTTCTCAATGCTTGT+GGG | + | chr4_4:61696207-61696226 | None:intergenic | 40.0% | |
| AGCAACTTTCTCAATGCTTG+TGG | + | chr4_4:61696208-61696227 | None:intergenic | 40.0% | |
| GAAAGTTGCTTCCAATACAC+AGG | - | chr4_4:61696218-61696237 | Msa0692930:intron | 40.0% | |
| GGGAGCAGAATTATCTTTCA+AGG | + | chr4_4:61696365-61696384 | None:intergenic | 40.0% | |
| CCCTAACAATGACATTCCAT+TGG | - | chr4_4:61696465-61696484 | Msa0692930:intron | 40.0% | |
| !! | TTCTTTAACTTGCCTTCCTC+AGG | - | chr4_4:61696602-61696621 | Msa0692930:intron | 40.0% |
| CAACAGTAGAGCAATTGGAT+CGG | - | chr4_4:61696666-61696685 | Msa0692930:intron | 40.0% | |
| AACAGTAGAGCAATTGGATC+GGG | - | chr4_4:61696667-61696686 | Msa0692930:intron | 40.0% | |
| GATCGGGCTTTCAAGAAATT+CGG | - | chr4_4:61696683-61696702 | Msa0692930:intron | 40.0% | |
| ATCGGGCTTTCAAGAAATTC+GGG | - | chr4_4:61696684-61696703 | Msa0692930:intron | 40.0% | |
| !!! | TTACAACAGGGGTCTTGTTT+TGG | - | chr4_4:61696827-61696846 | Msa0692930:intron | 40.0% |
| ! | AGGCATCGTAAAATTCTCAC+AGG | + | chr4_4:61697067-61697086 | None:intergenic | 40.0% |
| CTTTCCATTGAAGAAAGGAG+AGG | - | chr4_4:61697160-61697179 | Msa0692930:intron | 40.0% | |
| ATTCGTGAAAGACAGCAGTA+CGG | + | chr4_4:61697250-61697269 | None:intergenic | 40.0% | |
| ATAGGGTGTGATATTCCTCA+GGG | - | chr4_4:61697421-61697440 | Msa0692930:intron | 40.0% | |
| ! | TCTTGGTAATTGAGAGGCAA+CGG | - | chr4_4:61697690-61697709 | Msa0692930:intron | 40.0% |
| ! | TTAGTAGATAGCGGCATCTA+GGG | - | chr4_4:61697720-61697739 | Msa0692930:intron | 40.0% |
| ! | TTTTTCTGCGTCAGAGTTCT+TGG | - | chr4_4:61697793-61697812 | Msa0692930:intron | 40.0% |
| ATCTCTCCATCGCTTCAACA+AGG | - | chr4_4:61693516-61693535 | Msa0692930:three_prime_UTR | 45.0% | |
| ! | GATGGTTGGCAATGCTTTTG+TGG | - | chr4_4:61694386-61694405 | Msa0692930:intron | 45.0% |
| ATGAGTCGACCTGAAGAAGA+TGG | - | chr4_4:61694477-61694496 | Msa0692930:intron | 45.0% | |
| GTCATGGTACCATCTTCTTC+AGG | + | chr4_4:61694489-61694508 | None:intergenic | 45.0% | |
| GGACAAAGTGCAAATTTGGC+AGG | + | chr4_4:61694799-61694818 | None:intergenic | 45.0% | |
| GGAAGTGATGAGAGTTGAGT+AGG | - | chr4_4:61694895-61694914 | Msa0692930:intron | 45.0% | |
| AGTGATGAGAGTTGAGTAGG+GGG | - | chr4_4:61694898-61694917 | Msa0692930:intron | 45.0% | |
| GCAATATCATGGCACAAGGT+TGG | + | chr4_4:61694986-61695005 | None:intergenic | 45.0% | |
| TGGTCCTCAAACCTTAACAC+TGG | - | chr4_4:61695035-61695054 | Msa0692930:CDS | 45.0% | |
| GGAACCAGTGTTAAGGTTTG+AGG | + | chr4_4:61695042-61695061 | None:intergenic | 45.0% | |
| !! | CAAACCTTAACACTGGTTCC+TGG | - | chr4_4:61695042-61695061 | Msa0692930:CDS | 45.0% |
| CTCTCTCTCGAGATTGACTA+TGG | - | chr4_4:61695273-61695292 | Msa0692930:CDS | 45.0% | |
| !! | CAAGTACACAAGCTTTAGGG+TGG | - | chr4_4:61695380-61695399 | Msa0692930:CDS | 45.0% |
| !!! | GTTTGCGCAGTCATTTTTCC+TGG | - | chr4_4:61695497-61695516 | Msa0692930:intron | 45.0% |
| ACATAGAATCCCTTGTCCTG+TGG | + | chr4_4:61695525-61695544 | None:intergenic | 45.0% | |
| ! | ATCATTTGCTGGCACAGACT+CGG | + | chr4_4:61695595-61695614 | None:intergenic | 45.0% |
| TGATGTGATTTACCAGGCTC+GGG | + | chr4_4:61695654-61695673 | None:intergenic | 45.0% | |
| GTGATGTGATTTACCAGGCT+CGG | + | chr4_4:61695655-61695674 | None:intergenic | 45.0% | |
| GGTGGAACAACAGTTTGAGT+GGG | + | chr4_4:61696015-61696034 | None:intergenic | 45.0% | |
| GGTGGAATAACAGTTTGAGC+GGG | + | chr4_4:61696036-61696055 | None:intergenic | 45.0% | |
| GGGTGGAATAACAGTTTGAG+CGG | + | chr4_4:61696037-61696056 | None:intergenic | 45.0% | |
| GCAATAACAGTTTGAGTGGG+TGG | + | chr4_4:61696054-61696073 | None:intergenic | 45.0% | |
| AGTTGCTTCCAATACACAGG+AGG | - | chr4_4:61696221-61696240 | Msa0692930:intron | 45.0% | |
| ! | TGGAGTATCCTCCTGTGTAT+TGG | + | chr4_4:61696232-61696251 | None:intergenic | 45.0% |
| ATTCTGCTCCCTTCCATTTG+AGG | - | chr4_4:61696374-61696393 | Msa0692930:intron | 45.0% | |
| TTCTGCTCCCTTCCATTTGA+GGG | - | chr4_4:61696375-61696394 | Msa0692930:intron | 45.0% | |
| !! | TTAACTTGCCTTCCTCAGGT+AGG | - | chr4_4:61696606-61696625 | Msa0692930:intron | 45.0% |
| ! | TAACTTGCCTTCCTCAGGTA+GGG | - | chr4_4:61696607-61696626 | Msa0692930:intron | 45.0% |
| TGCTCTACTGTTGCACTCAT+AGG | + | chr4_4:61696659-61696678 | None:intergenic | 45.0% | |
| GAGTGCAACAGTAGAGCAAT+TGG | - | chr4_4:61696661-61696680 | Msa0692930:intron | 45.0% | |
| !!! | GGGGTCTTGTTTTGGTTTTG+TGG | - | chr4_4:61696835-61696854 | Msa0692930:intron | 45.0% |
| ! | TTCAATGCAAAGTGCCCTAG+AGG | - | chr4_4:61696874-61696893 | Msa0692930:intron | 45.0% |
| CTACGGTTGTCCAACATAAC+AGG | + | chr4_4:61697139-61697158 | None:intergenic | 45.0% | |
| CTTGCCTCTCCTTTCTTCAA+TGG | + | chr4_4:61697167-61697186 | None:intergenic | 45.0% | |
| TTCGTGAAAGACAGCAGTAC+GGG | + | chr4_4:61697249-61697268 | None:intergenic | 45.0% | |
| CACCCTATCATTGTTAGCTG+TGG | + | chr4_4:61697409-61697428 | None:intergenic | 45.0% | |
| GATAGGGTGTGATATTCCTC+AGG | - | chr4_4:61697420-61697439 | Msa0692930:intron | 45.0% | |
| AATGATAACTTCAGGGGTCG+TGG | - | chr4_4:61697468-61697487 | Msa0692930:intron | 45.0% | |
| ! | ACGGAAGGAACGATTTTGAG+AGG | - | chr4_4:61697523-61697542 | Msa0692930:intron | 45.0% |
| GTGCCAAGGAGTTATCAGAA+TGG | - | chr4_4:61697609-61697628 | Msa0692930:intron | 45.0% | |
| CCTCCATTCTGATAACTCCT+TGG | + | chr4_4:61697615-61697634 | None:intergenic | 45.0% | |
| CCAAGGAGTTATCAGAATGG+AGG | - | chr4_4:61697612-61697631 | Msa0692930:intron | 45.0% | |
| AGGAGTTATCAGAATGGAGG+AGG | - | chr4_4:61697615-61697634 | Msa0692930:intron | 45.0% | |
| ! | CTTGGTAATTGAGAGGCAAC+GGG | - | chr4_4:61697691-61697710 | Msa0692930:intron | 45.0% |
| ! | CTTAGTAGATAGCGGCATCT+AGG | - | chr4_4:61697719-61697738 | Msa0692930:intron | 45.0% |
| !!! | AATTAAACTATTTATTTTAT+CGG | - | chr4_4:61694189-61694208 | Msa0692930:intron | 5.0% |
| !! | ACTTATATTTATATATTTAT+AGG | - | chr4_4:61695771-61695790 | Msa0692930:intron | 5.0% |
| TCTCCATCGCTTCAACAAGG+AGG | - | chr4_4:61693519-61693538 | Msa0692930:three_prime_UTR | 50.0% | |
| GTTGGGGTTTGAACTGCTTC+AGG | + | chr4_4:61694360-61694379 | None:intergenic | 50.0% | |
| TCAAACCCCAACCTCTCAGA+TGG | - | chr4_4:61694368-61694387 | Msa0692930:intron | 50.0% | |
| TGCCAACCATCTGAGAGGTT+GGG | + | chr4_4:61694377-61694396 | None:intergenic | 50.0% | |
| TTGCCAACCATCTGAGAGGT+TGG | + | chr4_4:61694378-61694397 | None:intergenic | 50.0% | |
| AGCATTGCCAACCATCTGAG+AGG | + | chr4_4:61694382-61694401 | None:intergenic | 50.0% | |
| GACTCATGACACTTGAGTCG+TGG | + | chr4_4:61694464-61694483 | None:intergenic | 50.0% | |
| ! | AGTGGTGGTGACAGTTGTCA+TGG | + | chr4_4:61694505-61694524 | None:intergenic | 50.0% |
| TTGCCCAGGAACCAGTGTTA+AGG | + | chr4_4:61695049-61695068 | None:intergenic | 50.0% | |
| !! | GTACACAAGCTTTAGGGTGG+AGG | - | chr4_4:61695383-61695402 | Msa0692930:CDS | 50.0% |
| GGAGTGATGGTTGTAGTGAC+TGG | - | chr4_4:61695441-61695460 | Msa0692930:CDS | 50.0% | |
| !!! | GTCATTTTTCCTGGCTCCAC+AGG | - | chr4_4:61695506-61695525 | Msa0692930:intron | 50.0% |
| CCAGGCTCGGGTGTAATAAT+AGG | + | chr4_4:61695642-61695661 | None:intergenic | 50.0% | |
| CCTATTATTACACCCGAGCC+TGG | - | chr4_4:61695639-61695658 | Msa0692930:intron | 50.0% | |
| TGAGTGGGTGGAATGACTTC+AGG | + | chr4_4:61696000-61696019 | None:intergenic | 50.0% | |
| GGAACAACAGTTTGAGTGGG+TGG | + | chr4_4:61696012-61696031 | None:intergenic | 50.0% | |
| GGGTGGAACAACAGTTTGAG+TGG | + | chr4_4:61696016-61696035 | None:intergenic | 50.0% | |
| GGAATAACAGTTTGAGCGGG+TGG | + | chr4_4:61696033-61696052 | None:intergenic | 50.0% | |
| CAAAGAAGTGAGCTTGCCAC+TGG | - | chr4_4:61696095-61696114 | Msa0692930:intron | 50.0% | |
| GGAGAAGCCCTCAAATGGAA+GGG | + | chr4_4:61696385-61696404 | None:intergenic | 50.0% | |
| AGGAGAAGCCCTCAAATGGA+AGG | + | chr4_4:61696386-61696405 | None:intergenic | 50.0% | |
| TAGCAGGAGAAGCCCTCAAA+TGG | + | chr4_4:61696390-61696409 | None:intergenic | 50.0% | |
| ! | TTGTTAGGGGCTGGTACTTC+AGG | + | chr4_4:61696454-61696473 | None:intergenic | 50.0% |
| GGAATGTCATTGTTAGGGGC+TGG | + | chr4_4:61696463-61696482 | None:intergenic | 50.0% | |
| TATTGCATGAGCCCTACCTG+AGG | + | chr4_4:61696621-61696640 | None:intergenic | 50.0% | |
| TTCGGGCCCATTAAACGTGA+TGG | - | chr4_4:61696701-61696720 | Msa0692930:intron | 50.0% | |
| ! | TGCAAAGTGCCCTAGAGGTA+TGG | - | chr4_4:61696879-61696898 | Msa0692930:intron | 50.0% |
| GTCCAACATAACAGGAGGAG+AGG | + | chr4_4:61697131-61697150 | None:intergenic | 50.0% | |
| CGGTTGTCCAACATAACAGG+AGG | + | chr4_4:61697136-61697155 | None:intergenic | 50.0% | |
| TGATATTCCTCAGGGCGTAG+TGG | - | chr4_4:61697429-61697448 | Msa0692930:intron | 50.0% | |
| !! | AGGAACGATTTTGAGAGGCG+AGG | - | chr4_4:61697528-61697547 | Msa0692930:intron | 50.0% |
| GCACCTCCTTGTTGAAGCGA+TGG | + | chr4_4:61693525-61693544 | None:intergenic | 55.0% | |
| ACCCCAACCTCTCAGATGGT+TGG | - | chr4_4:61694372-61694391 | Msa0692930:intron | 55.0% | |
| GCCAACCATCTGAGAGGTTG+GGG | + | chr4_4:61694376-61694395 | None:intergenic | 55.0% | |
| TATGAACCTGATCCGGGTCG+CGG | + | chr4_4:61694434-61694453 | None:intergenic | 55.0% | |
| ! | GTAGTGACTGGCTGCTTGAC+TGG | - | chr4_4:61695453-61695472 | Msa0692930:intron | 55.0% |
| TTTCCTGGCTCCACAGGACA+AGG | - | chr4_4:61695512-61695531 | Msa0692930:intron | 55.0% | |
| TTCCTGGCTCCACAGGACAA+GGG | - | chr4_4:61695513-61695532 | Msa0692930:intron | 55.0% | |
| GTGAGCTTGCCACTGGAGAA+TGG | - | chr4_4:61696102-61696121 | Msa0692930:intron | 55.0% | |
| AGCAGCCACGCTATGTACAC+GGG | + | chr4_4:61696431-61696450 | None:intergenic | 55.0% | |
| GAGCAGCCACGCTATGTACA+CGG | + | chr4_4:61696432-61696451 | None:intergenic | 55.0% | |
| GGCCTCTCCTCCTGTTATGT+TGG | - | chr4_4:61697126-61697145 | Msa0692930:intron | 55.0% | |
| TTCAGGGGTCGTGGCAACTT+TGG | - | chr4_4:61697477-61697496 | Msa0692930:intron | 55.0% | |
| !! | CATTCTGGCTTCCTCGAGGT+CGG | + | chr4_4:61697566-61697585 | None:intergenic | 55.0% |
| AGCATCTCCATTGCTTCGCC+CGG | + | chr4_4:61697589-61697608 | None:intergenic | 55.0% | |
| GCAATGGAGATGCTGTGCCA+AGG | - | chr4_4:61697595-61697614 | Msa0692930:intron | 55.0% | |
| CTCAATTCTGCACCGCGACC+CGG | - | chr4_4:61694419-61694438 | Msa0692930:intron | 60.0% | |
| GCGACCCGGATCAGGTTCAT+AGG | - | chr4_4:61694433-61694452 | Msa0692930:intron | 60.0% | |
| ATCCCTTGTCCTGTGGAGCC+AGG | + | chr4_4:61695518-61695537 | None:intergenic | 60.0% | |
| ! | GGGTGCACAGCTGGTTTAGC+AGG | + | chr4_4:61696406-61696425 | None:intergenic | 60.0% |
| CCACGCTATGTACACGGGGT+GGG | + | chr4_4:61696426-61696445 | None:intergenic | 60.0% | |
| GCAGCCACGCTATGTACACG+GGG | + | chr4_4:61696430-61696449 | None:intergenic | 60.0% | |
| GCATGAGCCCTACCTGAGGA+AGG | + | chr4_4:61696617-61696636 | None:intergenic | 60.0% | |
| TCGGTATCCACTACGCCCTG+AGG | + | chr4_4:61697439-61697458 | None:intergenic | 60.0% | |
| AGGGGTCGTGGCAACTTTGG+TGG | - | chr4_4:61697480-61697499 | Msa0692930:intron | 60.0% | |
| GGTCGTGGCAACTTTGGTGG+CGG | - | chr4_4:61697483-61697502 | Msa0692930:intron | 60.0% | |
| !! | GCAACTTTGGTGGCGGTCGT+GGG | - | chr4_4:61697490-61697509 | Msa0692930:intron | 60.0% |
| !! | CAACTTTGGTGGCGGTCGTG+GGG | - | chr4_4:61697491-61697510 | Msa0692930:intron | 60.0% |
| !! | AACTTTGGTGGCGGTCGTGG+GGG | - | chr4_4:61697492-61697511 | Msa0692930:intron | 60.0% |
| !! | GGTCGTGGGGGTGGCTTTAA+CGG | - | chr4_4:61697504-61697523 | Msa0692930:intron | 60.0% |
| !! | GTGGGGGTGGCTTTAACGGA+AGG | - | chr4_4:61697508-61697527 | Msa0692930:intron | 60.0% |
| GAGAGGCGAGGTGAGTTCTC+TGG | - | chr4_4:61697540-61697559 | Msa0692930:intron | 60.0% | |
| CCTCGAGGAAGCCAGAATGC+CGG | - | chr4_4:61697567-61697586 | Msa0692930:intron | 60.0% | |
| CTCGAGGAAGCCAGAATGCC+GGG | - | chr4_4:61697568-61697587 | Msa0692930:intron | 60.0% | |
| CATTGCTTCGCCCGGCATTC+TGG | + | chr4_4:61697581-61697600 | None:intergenic | 60.0% | |
| CAGAATGCCGGGCGAAGCAA+TGG | - | chr4_4:61697579-61697598 | Msa0692930:intron | 60.0% | |
| CCCACCCCGTGTACATAGCG+TGG | - | chr4_4:61696423-61696442 | Msa0692930:intron | 65.0% | |
| GCCACGCTATGTACACGGGG+TGG | + | chr4_4:61696427-61696446 | None:intergenic | 65.0% | |
| !! | GGCAACTTTGGTGGCGGTCG+TGG | - | chr4_4:61697489-61697508 | Msa0692930:intron | 65.0% |
| GAGTTCTCTGGCCGACCTCG+AGG | - | chr4_4:61697552-61697571 | Msa0692930:intron | 65.0% | |
| !! | CCGGCATTCTGGCTTCCTCG+AGG | + | chr4_4:61697570-61697589 | None:intergenic | 65.0% |
| TCTGCACCGCGACCCGGATC+AGG | - | chr4_4:61694425-61694444 | Msa0692930:intron | 70.0% | |
| ACACGGGGTGGGTGCACAGC+TGG | + | chr4_4:61696415-61696434 | None:intergenic | 70.0% | |
| !! | TTTGGTGGCGGTCGTGGGGG+TGG | - | chr4_4:61697495-61697514 | Msa0692930:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 61693420 | 61698026 | 61693420 | ID=Msa0692930;Name=Msa0692930 |
| chr4_4 | mRNA | 61693420 | 61698026 | 61693420 | ID=Msa0692930-mRNA-1;Parent=Msa0692930;Name=Msa0692930-mRNA-1;_AED=0.05;_eAED=0.05;_QI=123|1|1|1|0.87|0.88|9|349|467 |
| chr4_4 | exon | 61693420 | 61694004 | 61693420 | ID=Msa0692930-mRNA-1:exon:17156;Parent=Msa0692930-mRNA-1 |
| chr4_4 | exon | 61694265 | 61694319 | 61694265 | ID=Msa0692930-mRNA-1:exon:17155;Parent=Msa0692930-mRNA-1 |
| chr4_4 | exon | 61694551 | 61694610 | 61694551 | ID=Msa0692930-mRNA-1:exon:17154;Parent=Msa0692930-mRNA-1 |
| chr4_4 | exon | 61694701 | 61694822 | 61694701 | ID=Msa0692930-mRNA-1:exon:17153;Parent=Msa0692930-mRNA-1 |
| chr4_4 | exon | 61694938 | 61695091 | 61694938 | ID=Msa0692930-mRNA-1:exon:17152;Parent=Msa0692930-mRNA-1 |
| chr4_4 | exon | 61695174 | 61695463 | 61695174 | ID=Msa0692930-mRNA-1:exon:17151;Parent=Msa0692930-mRNA-1 |
| chr4_4 | exon | 61695786 | 61696092 | 61695786 | ID=Msa0692930-mRNA-1:exon:17150;Parent=Msa0692930-mRNA-1 |
| chr4_4 | exon | 61696919 | 61697100 | 61696919 | ID=Msa0692930-mRNA-1:exon:17149;Parent=Msa0692930-mRNA-1 |
| chr4_4 | exon | 61697906 | 61698026 | 61697906 | ID=Msa0692930-mRNA-1:exon:17148;Parent=Msa0692930-mRNA-1 |
| chr4_4 | five_prime_UTR | 61697906 | 61698026 | 61697906 | ID=Msa0692930-mRNA-1:five_prime_utr;Parent=Msa0692930-mRNA-1 |
| chr4_4 | five_prime_UTR | 61697099 | 61697100 | 61697099 | ID=Msa0692930-mRNA-1:five_prime_utr;Parent=Msa0692930-mRNA-1 |
| chr4_4 | CDS | 61696919 | 61697098 | 61696919 | ID=Msa0692930-mRNA-1:cds;Parent=Msa0692930-mRNA-1 |
| chr4_4 | CDS | 61695786 | 61696092 | 61695786 | ID=Msa0692930-mRNA-1:cds;Parent=Msa0692930-mRNA-1 |
| chr4_4 | CDS | 61695174 | 61695463 | 61695174 | ID=Msa0692930-mRNA-1:cds;Parent=Msa0692930-mRNA-1 |
| chr4_4 | CDS | 61694938 | 61695091 | 61694938 | ID=Msa0692930-mRNA-1:cds;Parent=Msa0692930-mRNA-1 |
| chr4_4 | CDS | 61694701 | 61694822 | 61694701 | ID=Msa0692930-mRNA-1:cds;Parent=Msa0692930-mRNA-1 |
| chr4_4 | CDS | 61694551 | 61694610 | 61694551 | ID=Msa0692930-mRNA-1:cds;Parent=Msa0692930-mRNA-1 |
| chr4_4 | CDS | 61694265 | 61694319 | 61694265 | ID=Msa0692930-mRNA-1:cds;Parent=Msa0692930-mRNA-1 |
| chr4_4 | CDS | 61693769 | 61694004 | 61693769 | ID=Msa0692930-mRNA-1:cds;Parent=Msa0692930-mRNA-1 |
| chr4_4 | three_prime_UTR | 61693420 | 61693768 | 61693420 | ID=Msa0692930-mRNA-1:three_prime_utr;Parent=Msa0692930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
