Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1403520 | XP_003592901.1 | 98.565 | 418 | 6 | 0 | 1 | 418 | 1 | 418 | 0.0 | 854 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1403520 | sp|Q9FUM1|EF1G_PRUAV | 78.910 | 422 | 82 | 4 | 3 | 418 | 2 | 422 | 0.0 | 656 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1403520 | Q1SL16 | 98.565 | 418 | 6 | 0 | 1 | 418 | 1 | 418 | 0.0 | 854 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001390 | Msa1403520 | 0.808364 | 3.212421e-50 | -8.615850e-47 |
| Msa0016440 | Msa1403520 | 0.851853 | 6.772134e-61 | -8.615850e-47 |
| Msa0042510 | Msa1403520 | 0.844562 | 7.002730e-59 | -8.615850e-47 |
| Msa0071640 | Msa1403520 | 0.833446 | 5.309651e-56 | -8.615850e-47 |
| Msa0079560 | Msa1403520 | 0.861082 | 1.317078e-63 | -8.615850e-47 |
| Msa0086160 | Msa1403520 | 0.884410 | 1.964712e-71 | -8.615850e-47 |
| Msa0089540 | Msa1403520 | 0.832510 | 9.073111e-56 | -8.615850e-47 |
| Msa0116600 | Msa1403520 | 0.839119 | 1.916630e-57 | -8.615850e-47 |
| Msa0116690 | Msa1403520 | 0.838170 | 3.371173e-57 | -8.615850e-47 |
| Msa1347610 | Msa1403520 | 0.873727 | 1.175228e-67 | -8.615850e-47 |
| Msa1351020 | Msa1403520 | 0.806884 | 6.623274e-50 | -8.615850e-47 |
| Msa1363930 | Msa1403520 | 0.818662 | 1.743663e-52 | -8.615850e-47 |
| Msa1366540 | Msa1403520 | 0.807649 | 4.558381e-50 | -8.615850e-47 |
| Msa1385480 | Msa1403520 | 0.805828 | 1.105427e-49 | -8.615850e-47 |
| Msa1387750 | Msa1403520 | 0.858024 | 1.094104e-62 | -8.615850e-47 |
| Msa1390760 | Msa1403520 | 0.835108 | 2.032750e-56 | -8.615850e-47 |
| Msa1403520 | Msa1407550 | 0.828812 | 7.300560e-55 | -8.615850e-47 |
| Msa1403520 | Msa1413570 | 0.840837 | 6.834196e-58 | -8.615850e-47 |
| Msa1403520 | Msa1423050 | 0.810655 | 1.034964e-50 | -8.615850e-47 |
| Msa1403520 | Msa1424570 | 0.821011 | 5.064787e-53 | -8.615850e-47 |
| Msa1403520 | Msa1446510 | 0.845825 | 3.189602e-59 | -8.615850e-47 |
| Msa1403520 | Msa1450560 | 0.938852 | 3.386031e-99 | -8.615850e-47 |
| Msa1403520 | Msa1463510 | 0.843753 | 1.154196e-58 | -8.615850e-47 |
| Msa1403520 | Msa1465700 | 0.800425 | 1.449890e-48 | -8.615850e-47 |
| Msa1403520 | Msa1465890 | 0.853302 | 2.613803e-61 | -8.615850e-47 |
| Msa0602900 | Msa1403520 | 0.852696 | 3.895772e-61 | -8.615850e-47 |
| Msa0609120 | Msa1403520 | 0.809075 | 2.263360e-50 | -8.615850e-47 |
| Msa0610380 | Msa1403520 | 0.804530 | 2.067066e-49 | -8.615850e-47 |
| Msa0619230 | Msa1403520 | 0.828714 | 7.711135e-55 | -8.615850e-47 |
| Msa0621190 | Msa1403520 | 0.844053 | 9.593426e-59 | -8.615850e-47 |
| Msa0623360 | Msa1403520 | -0.820108 | 8.162987e-53 | -8.615850e-47 |
| Msa0643960 | Msa1403520 | 0.845724 | 3.396954e-59 | -8.615850e-47 |
| Msa0650910 | Msa1403520 | 0.808734 | 2.677794e-50 | -8.615850e-47 |
| Msa0656450 | Msa1403520 | 0.843298 | 1.526743e-58 | -8.615850e-47 |
| Msa0663400 | Msa1403520 | 0.800579 | 1.349033e-48 | -8.615850e-47 |
| Msa0692930 | Msa1403520 | 0.807199 | 5.681215e-50 | -8.615850e-47 |
| Msa0700370 | Msa1403520 | 0.806326 | 8.686466e-50 | -8.615850e-47 |
| Msa0708630 | Msa1403520 | 0.863140 | 3.078878e-64 | -8.615850e-47 |
| Msa0709380 | Msa1403520 | 0.804920 | 1.713627e-49 | -8.615850e-47 |
| Msa0718560 | Msa1403520 | 0.874710 | 5.457097e-68 | -8.615850e-47 |
| Msa0759660 | Msa1403520 | 0.800900 | 1.160074e-48 | -8.615850e-47 |
| Msa0784830 | Msa1403520 | 0.801027 | 1.092685e-48 | -8.615850e-47 |
| Msa0790450 | Msa1403520 | 0.941532 | 3.528867e-101 | -8.615850e-47 |
| Msa0798590 | Msa1403520 | 0.854947 | 8.764197e-62 | -8.615850e-47 |
| Msa0127230 | Msa1403520 | 0.860625 | 1.813273e-63 | -8.615850e-47 |
| Msa0132460 | Msa1403520 | 0.861186 | 1.224034e-63 | -8.615850e-47 |
| Msa0172300 | Msa1403520 | 0.831506 | 1.606066e-55 | -8.615850e-47 |
| Msa0182050 | Msa1403520 | 0.859471 | 4.042573e-63 | -8.615850e-47 |
| Msa0182100 | Msa1403520 | 0.877621 | 5.425309e-69 | -8.615850e-47 |
| Msa0188740 | Msa1403520 | 0.967570 | 1.846099e-127 | -8.615850e-47 |
| Msa0192300 | Msa1403520 | 0.853573 | 2.185488e-61 | -8.615850e-47 |
| Msa0195030 | Msa1403520 | 0.819939 | 8.923194e-53 | -8.615850e-47 |
| Msa0219090 | Msa1403520 | 0.818180 | 2.242638e-52 | -8.615850e-47 |
| Msa0237180 | Msa1403520 | 0.843766 | 1.145273e-58 | -8.615850e-47 |
| Msa1227350 | Msa1403520 | 0.813472 | 2.516016e-51 | -8.615850e-47 |
| Msa1235950 | Msa1403520 | 0.811386 | 7.184450e-51 | -8.615850e-47 |
| Msa1235980 | Msa1403520 | 0.813393 | 2.619110e-51 | -8.615850e-47 |
| Msa1237040 | Msa1403520 | 0.864172 | 1.471801e-64 | -8.615850e-47 |
| Msa1245270 | Msa1403520 | 0.801701 | 7.952533e-49 | -8.615850e-47 |
| Msa1250470 | Msa1403520 | 0.803192 | 3.919443e-49 | -8.615850e-47 |
| Msa1255830 | Msa1403520 | 0.829211 | 5.844509e-55 | -8.615850e-47 |
| Msa1255850 | Msa1403520 | 0.824572 | 7.505540e-54 | -8.615850e-47 |
| Msa1263610 | Msa1403520 | -0.819114 | 1.376167e-52 | -8.615850e-47 |
| Msa1284800 | Msa1403520 | 0.861906 | 7.382335e-64 | -8.615850e-47 |
| Msa1296090 | Msa1403520 | 0.833312 | 5.732593e-56 | -8.615850e-47 |
| Msa1317390 | Msa1403520 | 0.849734 | 2.673267e-60 | -8.615850e-47 |
| Msa1333370 | Msa1403520 | 0.802608 | 5.175576e-49 | -8.615850e-47 |
| Msa1341780 | Msa1403520 | 0.851902 | 6.558261e-61 | -8.615850e-47 |
| Msa0370350 | Msa1403520 | -0.811797 | 5.849755e-51 | -8.615850e-47 |
| Msa0371490 | Msa1403520 | 0.840892 | 6.614279e-58 | -8.615850e-47 |
| Msa0373350 | Msa1403520 | 0.839918 | 1.188588e-57 | -8.615850e-47 |
| Msa0377370 | Msa1403520 | 0.832661 | 8.322860e-56 | -8.615850e-47 |
| Msa0380590 | Msa1403520 | 0.851864 | 6.722175e-61 | -8.615850e-47 |
| Msa0387290 | Msa1403520 | 0.857942 | 1.157115e-62 | -8.615850e-47 |
| Msa0388520 | Msa1403520 | 0.860557 | 1.901413e-63 | -8.615850e-47 |
| Msa0416470 | Msa1403520 | 0.807670 | 4.513680e-50 | -8.615850e-47 |
| Msa0421920 | Msa1403520 | 0.824784 | 6.689319e-54 | -8.615850e-47 |
| Msa0426090 | Msa1403520 | 0.802035 | 6.791388e-49 | -8.615850e-47 |
| Msa0426250 | Msa1403520 | 0.809230 | 2.096822e-50 | -8.615850e-47 |
| Msa0426940 | Msa1403520 | 0.858972 | 5.704633e-63 | -8.615850e-47 |
| Msa0433060 | Msa1403520 | 0.849138 | 3.918142e-60 | -8.615850e-47 |
| Msa0450150 | Msa1403520 | 0.810405 | 1.171640e-50 | -8.615850e-47 |
| Msa0463080 | Msa1403520 | 0.802036 | 6.787340e-49 | -8.615850e-47 |
| Msa0469430 | Msa1403520 | 0.832773 | 7.806351e-56 | -8.615850e-47 |
| Msa0477670 | Msa1403520 | 0.807933 | 3.968059e-50 | -8.615850e-47 |
| Msa0987570 | Msa1403520 | 0.809712 | 1.652009e-50 | -8.615850e-47 |
| Msa1025200 | Msa1403520 | 0.854677 | 1.049878e-61 | -8.615850e-47 |
| Msa1025220 | Msa1403520 | 0.859471 | 4.042049e-63 | -8.615850e-47 |
| Msa1026710 | Msa1403520 | 0.848405 | 6.257474e-60 | -8.615850e-47 |
| Msa1047020 | Msa1403520 | 0.832515 | 9.047058e-56 | -8.615850e-47 |
| Msa1068660 | Msa1403520 | 0.829147 | 6.056297e-55 | -8.615850e-47 |
| Msa1070810 | Msa1403520 | 0.836914 | 7.076084e-57 | -8.615850e-47 |
| Msa1082050 | Msa1403520 | 0.839417 | 1.604829e-57 | -8.615850e-47 |
| Msa1085850 | Msa1403520 | 0.867285 | 1.532084e-65 | -8.615850e-47 |
| Msa0270160 | Msa1403520 | 0.980031 | 2.730614e-149 | -8.615850e-47 |
| Msa0274940 | Msa1403520 | 0.831594 | 1.527730e-55 | -8.615850e-47 |
| Msa0277600 | Msa1403520 | 0.808338 | 3.252401e-50 | -8.615850e-47 |
| Msa0301250 | Msa1403520 | 0.851016 | 1.167451e-60 | -8.615850e-47 |
| Msa0313060 | Msa1403520 | 0.854607 | 1.099768e-61 | -8.615850e-47 |
| Msa0315660 | Msa1403520 | 0.838116 | 3.481698e-57 | -8.615850e-47 |
| Msa0341860 | Msa1403520 | -0.800986 | 1.113988e-48 | -8.615850e-47 |
| Msa1124980 | Msa1403520 | 0.825555 | 4.397389e-54 | -8.615850e-47 |
| Msa1126690 | Msa1403520 | 0.857365 | 1.715119e-62 | -8.615850e-47 |
| Msa1136980 | Msa1403520 | 0.811166 | 8.020784e-51 | -8.615850e-47 |
| Msa1144610 | Msa1403520 | 0.817920 | 2.566913e-52 | -8.615850e-47 |
| Msa1144630 | Msa1403520 | 0.821350 | 4.231278e-53 | -8.615850e-47 |
| Msa1156830 | Msa1403520 | 0.805299 | 1.427286e-49 | -8.615850e-47 |
| Msa1158630 | Msa1403520 | 0.837739 | 4.351056e-57 | -8.615850e-47 |
| Msa1164520 | Msa1403520 | 0.805602 | 1.233488e-49 | -8.615850e-47 |
| Msa1165210 | Msa1403520 | 0.839578 | 1.457273e-57 | -8.615850e-47 |
| Msa1167360 | Msa1403520 | 0.817243 | 3.648797e-52 | -8.615850e-47 |
| Msa1219760 | Msa1403520 | 0.818524 | 1.874505e-52 | -8.615850e-47 |
| Msa0500420 | Msa1403520 | 0.847805 | 9.167187e-60 | -8.615850e-47 |
| Msa0511760 | Msa1403520 | 0.829148 | 6.052039e-55 | -8.615850e-47 |
| Msa0515110 | Msa1403520 | 0.845189 | 4.743247e-59 | -8.615850e-47 |
| Msa0521730 | Msa1403520 | 0.898842 | 3.569717e-77 | -8.615850e-47 |
| Msa0524340 | Msa1403520 | 0.804035 | 2.620789e-49 | -8.615850e-47 |
| Msa0524450 | Msa1403520 | 0.810273 | 1.251206e-50 | -8.615850e-47 |
| Msa0524680 | Msa1403520 | 0.846217 | 2.495827e-59 | -8.615850e-47 |
| Msa0540160 | Msa1403520 | -0.800724 | 1.260322e-48 | -8.615850e-47 |
| Msa0547920 | Msa1403520 | 0.832836 | 7.530212e-56 | -8.615850e-47 |
| Msa0563540 | Msa1403520 | 0.810369 | 1.192869e-50 | -8.615850e-47 |
| Msa0573550 | Msa1403520 | 0.838519 | 2.741025e-57 | -8.615850e-47 |
| Msa0574780 | Msa1403520 | 0.811063 | 8.445081e-51 | -8.615850e-47 |
| Msa0578010 | Msa1403520 | 0.847230 | 1.318571e-59 | -8.615850e-47 |
| Msa0589160 | Msa1403520 | 0.809445 | 1.886077e-50 | -8.615850e-47 |
| Msa0880050 | Msa1403520 | 0.816181 | 6.312578e-52 | -8.615850e-47 |
| Msa0929700 | Msa1403520 | 0.833637 | 4.756472e-56 | -8.615850e-47 |
| Msa0930100 | Msa1403520 | 0.856572 | 2.938836e-62 | -8.615850e-47 |
| Msa0930360 | Msa1403520 | 0.870610 | 1.281610e-66 | -8.615850e-47 |
| Msa0930790 | Msa1403520 | 0.825108 | 5.610275e-54 | -8.615850e-47 |
| Msa0930890 | Msa1403520 | 0.825934 | 3.574875e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1403520 | MtrunA17_Chr2g0276951 | 98.565 | 418 | 6 | 0 | 1 | 418 | 1 | 418 | 0.0 | 854 |
| Msa1403520 | MtrunA17_Chr3g0102331 | 89.021 | 419 | 42 | 3 | 3 | 418 | 2 | 419 | 0.0 | 769 |
| Msa1403520 | MtrunA17_Chr0c12g0493651 | 83.055 | 419 | 67 | 3 | 3 | 418 | 2 | 419 | 0.0 | 678 |
| Msa1403520 | MtrunA17_Chr4g0077001 | 56.522 | 322 | 52 | 3 | 13 | 333 | 12 | 246 | 1.23e-114 | 335 |
| Msa1403520 | MtrunA17_Chr4g0077011 | 90.769 | 65 | 6 | 0 | 344 | 408 | 1 | 65 | 1.11e-38 | 135 |
| Msa1403520 | MtrunA17_Chr3g0109891 | 30.233 | 172 | 107 | 6 | 42 | 203 | 40 | 208 | 1.19e-13 | 69.7 |
| Msa1403520 | MtrunA17_Chr1g0157211 | 28.221 | 163 | 107 | 4 | 16 | 169 | 16 | 177 | 5.34e-12 | 65.1 |
| Msa1403520 | MtrunA17_Chr1g0195831 | 27.014 | 211 | 125 | 5 | 13 | 205 | 11 | 210 | 6.44e-12 | 64.7 |
| Msa1403520 | MtrunA17_Chr3g0095781 | 25.714 | 175 | 113 | 4 | 42 | 204 | 39 | 208 | 8.23e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1403520 | AT1G09640.1 | 76.555 | 418 | 91 | 4 | 3 | 418 | 2 | 414 | 0.0 | 641 |
| Msa1403520 | AT1G57720.1 | 74.341 | 417 | 101 | 5 | 3 | 418 | 2 | 413 | 0.0 | 627 |
| Msa1403520 | AT1G57720.2 | 74.341 | 417 | 101 | 5 | 3 | 418 | 2 | 413 | 0.0 | 627 |
| Msa1403520 | AT1G09640.2 | 69.608 | 204 | 60 | 2 | 3 | 205 | 2 | 204 | 7.31e-97 | 291 |
| Msa1403520 | AT1G09640.2 | 88.732 | 71 | 7 | 1 | 349 | 418 | 195 | 265 | 1.02e-35 | 132 |
| Msa1403520 | AT2G30870.1 | 30.075 | 133 | 84 | 3 | 38 | 162 | 35 | 166 | 7.82e-13 | 67.8 |
| Msa1403520 | AT2G30860.1 | 29.371 | 143 | 94 | 2 | 27 | 162 | 24 | 166 | 1.71e-12 | 67.0 |
| Msa1403520 | AT3G62760.1 | 28.141 | 199 | 128 | 6 | 16 | 203 | 14 | 208 | 2.44e-12 | 66.6 |
| Msa1403520 | AT5G17220.1 | 28.655 | 171 | 113 | 3 | 42 | 204 | 40 | 209 | 1.30e-11 | 64.3 |
Find 134 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCTAATATCTTGCGGAAAT+TGG | 0.099297 | tig0022967:-28904 | None:intergenic |
| CTTTGGTTCATCTTTGGTTT+TGG | 0.104573 | tig0022967:-28994 | None:intergenic |
| CATTCATCCATGATAAATTT+TGG | 0.113279 | tig0022967:-29613 | None:intergenic |
| GTGTTTGATTTGCAGGATTC+TGG | 0.117283 | tig0022967:+29377 | Msa1403520:intron |
| CACTTTCTTTGGTTCATCTT+TGG | 0.187717 | tig0022967:-29000 | None:intergenic |
| TCCTCCAAGTAAGATGATTT+TGG | 0.192577 | tig0022967:+29106 | Msa1403520:CDS |
| TGGATCAGAGCCTCCATTTA+AGG | 0.199866 | tig0022967:+29555 | Msa1403520:CDS |
| TTTGGAAAGATGCTTATAAT+TGG | 0.211636 | tig0022967:+29535 | Msa1403520:CDS |
| TCTGATTTAGCCACTTTCTT+TGG | 0.237195 | tig0022967:-29011 | None:intergenic |
| AGGATTCTTGGGTTTGGGCT+TGG | 0.251916 | tig0022967:-29072 | None:intergenic |
| ACAACATCCAACTTGTATAT+TGG | 0.252389 | tig0022967:+28801 | Msa1403520:CDS |
| CTCCTCTTCAACTTCTACTT+TGG | 0.254637 | tig0022967:-29045 | None:intergenic |
| GGATTCTTGGGTTTGGGCTT+GGG | 0.262060 | tig0022967:-29071 | None:intergenic |
| CCCAATTTCCGCAAGATATT+AGG | 0.262248 | tig0022967:+28903 | Msa1403520:CDS |
| CACAACCCCTTCACCTTAAA+TGG | 0.280661 | tig0022967:-29568 | None:intergenic |
| CTGGCTCGCAAGTATGCTTT+TGG | 0.282861 | tig0022967:+29517 | Msa1403520:CDS |
| ATTTGAGGGAGAGGCTCTTT+TGG | 0.299039 | tig0022967:+29729 | Msa1403520:CDS |
| CAAATTCTATATTTCTCTTT+CGG | 0.305227 | tig0022967:+29937 | Msa1403520:three_prime_UTR |
| TTTATCAACATGAACCCTAT+TGG | 0.305444 | tig0022967:+27322 | Msa1403520:CDS |
| TCCTCTTCAACTTCTACTTT+GGG | 0.315309 | tig0022967:-29044 | None:intergenic |
| TTTCTTTCAGGTCCCGGTCT+TGG | 0.315787 | tig0022967:+27424 | Msa1403520:intron |
| TCAAGAGGATTCTTGGGTTT+GGG | 0.320569 | tig0022967:-29077 | None:intergenic |
| GTCAAGAGGATTCTTGGGTT+TGG | 0.321823 | tig0022967:-29078 | None:intergenic |
| ACAATACCTACCTTTCCAAT+AGG | 0.324030 | tig0022967:-27337 | None:intergenic |
| AAGAAGGTCAAGAGGATTCT+TGG | 0.332287 | tig0022967:-29084 | None:intergenic |
| TTGGGTCACAACAATTTGTT+TGG | 0.342164 | tig0022967:+27598 | Msa1403520:CDS |
| TTTAAGTGAAAACTAGTTCC+AGG | 0.343366 | tig0022967:+29763 | Msa1403520:exon |
| GTTGGAAGCCATGGCGGCCT+TGG | 0.343555 | tig0022967:+27096 | Msa1403520:exon |
| TCATCACTATAGCAGAAAAT+AGG | 0.351177 | tig0022967:-29830 | None:intergenic |
| CTATATTTCTCTTTCGGCTT+AGG | 0.355049 | tig0022967:+29943 | Msa1403520:three_prime_UTR |
| TTGTGACCCTGAACAAGGTT+GGG | 0.356898 | tig0022967:+29473 | Msa1403520:CDS |
| CAGGTACAACTTCATGATAT+TGG | 0.358542 | tig0022967:-28145 | None:intergenic |
| CAATACCTACCTTTCCAATA+GGG | 0.369972 | tig0022967:-27336 | None:intergenic |
| CCTAATATCTTGCGGAAATT+GGG | 0.374931 | tig0022967:-28903 | None:intergenic |
| TGGATCATCTCTTATTGATC+AGG | 0.386602 | tig0022967:+27618 | Msa1403520:CDS |
| CTTTCCTGCAGTTGCCCGAT+TGG | 0.389371 | tig0022967:+27579 | Msa1403520:intron |
| CTCATGTTGAGAGATACTTT+TGG | 0.389806 | tig0022967:+28865 | Msa1403520:CDS |
| CATTTAAGGTGAAGGGGTTG+TGG | 0.403530 | tig0022967:+29569 | Msa1403520:CDS |
| GCTGAAATTTAAATGCTTTG+TGG | 0.407613 | tig0022967:+29881 | Msa1403520:three_prime_UTR |
| TGTTTGATTTGCAGGATTCT+GGG | 0.410419 | tig0022967:+29378 | Msa1403520:intron |
| GAAACACCCATCTGAAAATC+AGG | 0.417209 | tig0022967:-27283 | None:intergenic |
| TTTCCTGCAGTTGCCCGATT+GGG | 0.425435 | tig0022967:+27580 | Msa1403520:intron |
| AGAAGGTCAAGAGGATTCTT+GGG | 0.433602 | tig0022967:-29083 | None:intergenic |
| AGAGATTCCAAAATTTATCA+TGG | 0.435888 | tig0022967:+29606 | Msa1403520:CDS |
| TATTGGTTTCGCTAAACTCT+TGG | 0.436845 | tig0022967:+28818 | Msa1403520:CDS |
| TTTGTGACCCTGAACAAGGT+TGG | 0.442505 | tig0022967:+29472 | Msa1403520:CDS |
| ATCCAGAGGGATACTCTCTC+TGG | 0.443260 | tig0022967:+29410 | Msa1403520:CDS |
| CAAATTGTTGTGACCCAATC+GGG | 0.445051 | tig0022967:-27593 | None:intergenic |
| GGGTTCATGTTGATAAATTG+AGG | 0.453213 | tig0022967:-27316 | None:intergenic |
| AAATATAGAATTTGTAACTC+TGG | 0.457667 | tig0022967:-29928 | None:intergenic |
| GACCTCACGGAAGTTCCTCT+TGG | 0.467302 | tig0022967:-29156 | None:intergenic |
| AAAAGAGCCTCTCCCTCAAA+TGG | 0.468428 | tig0022967:-29727 | None:intergenic |
| ATTTCTGCAGAGGATGGATC+TGG | 0.469227 | tig0022967:+29498 | Msa1403520:CDS |
| TAGCCTCAGTCTGCTTAACC+TGG | 0.481958 | tig0022967:-28926 | None:intergenic |
| TCATCCAAAATCATCTTACT+TGG | 0.482283 | tig0022967:-29110 | None:intergenic |
| CTCTCAAAGACAGGACCATC+AGG | 0.483996 | tig0022967:-27452 | None:intergenic |
| ACAAATTGTTGTGACCCAAT+CGG | 0.484795 | tig0022967:-27594 | None:intergenic |
| AAGTAAGGACTAAACTTAGA+AGG | 0.485815 | tig0022967:-30058 | None:intergenic |
| TGCTGAACCATTTGAGGGAG+AGG | 0.491080 | tig0022967:+29720 | Msa1403520:CDS |
| TCCAAAATCATCTTACTTGG+AGG | 0.494526 | tig0022967:-29107 | None:intergenic |
| TGTGACCCTGAACAAGGTTG+GGG | 0.494527 | tig0022967:+29474 | Msa1403520:CDS |
| GAGCTGCGCGTTGGAAGCCA+TGG | 0.497491 | tig0022967:+27087 | Msa1403520:exon |
| GAAGATGCTGAACCATTTGA+GGG | 0.499250 | tig0022967:+29715 | Msa1403520:CDS |
| ATCTGCTAAGCAGCAGCCTA+AGG | 0.499718 | tig0022967:+28962 | Msa1403520:CDS |
| TGAAGATGCTGAACCATTTG+AGG | 0.504616 | tig0022967:+29714 | Msa1403520:CDS |
| TTTCCGCAAGATATTAGGCC+AGG | 0.506830 | tig0022967:+28908 | Msa1403520:CDS |
| GAGCCTCCATTTAAGGTGAA+GGG | 0.508653 | tig0022967:+29562 | Msa1403520:CDS |
| GGTTCATGTTGATAAATTGA+GGG | 0.510474 | tig0022967:-27315 | None:intergenic |
| TGCTGCTTAGCAGATGGAAT+AGG | 0.510683 | tig0022967:-28954 | None:intergenic |
| GAAAACTAGTTCCAGGATTG+TGG | 0.513494 | tig0022967:+29770 | Msa1403520:exon |
| ATATCTTGCGGAAATTGGGC+TGG | 0.518090 | tig0022967:-28899 | None:intergenic |
| TCATCTTACTTGGAGGAAGA+AGG | 0.519375 | tig0022967:-29100 | None:intergenic |
| TTCCGTGAGGTCGCAATCAA+AGG | 0.519400 | tig0022967:+29167 | Msa1403520:CDS |
| CTCACAATACCTACTTGGTC+GGG | 0.524651 | tig0022967:+28751 | Msa1403520:CDS |
| TTATGACAAAACCACAATCC+TGG | 0.525090 | tig0022967:-29781 | None:intergenic |
| AGCGAAACCAATATACAAGT+TGG | 0.525950 | tig0022967:-28808 | None:intergenic |
| CAAAGATGAACCAAAGAAAG+TGG | 0.527852 | tig0022967:+29001 | Msa1403520:CDS |
| CGGCATATCCAAGTCTTGGC+AGG | 0.531508 | tig0022967:-28164 | None:intergenic |
| TTCGCTCAAGAGAGCACTTG+AGG | 0.540956 | tig0022967:+28710 | Msa1403520:CDS |
| AACCAGAGAGAGTATCCCTC+TGG | 0.541067 | tig0022967:-29412 | None:intergenic |
| GCTCACAATACCTACTTGGT+CGG | 0.543458 | tig0022967:+28750 | Msa1403520:CDS |
| TAGGCGGCATATCCAAGTCT+TGG | 0.546133 | tig0022967:-28168 | None:intergenic |
| CCATCAGGAGTTTCCAAGAC+CGG | 0.547363 | tig0022967:-27437 | None:intergenic |
| TACCTTTGATTGCGACCTCA+CGG | 0.549156 | tig0022967:-29169 | None:intergenic |
| AGTAATGCCATTGCTCGCTA+TGG | 0.549245 | tig0022967:+27473 | Msa1403520:CDS |
| ACAACTTACTGGAGGAAAGT+AGG | 0.550453 | tig0022967:-28187 | None:intergenic |
| TTAGGCTGCTGCTTAGCAGA+TGG | 0.550675 | tig0022967:-28960 | None:intergenic |
| AACGAGAGAGAGCTGCGCGT+TGG | 0.552923 | tig0022967:+27078 | Msa1403520:five_prime_UTR |
| GCCCAAAGTAGAAGTTGAAG+AGG | 0.556725 | tig0022967:+29043 | Msa1403520:CDS |
| AGCATCTTCAATCATCTGAC+TGG | 0.558457 | tig0022967:-29701 | None:intergenic |
| CTGATTGCTGCTGAATATGT+TGG | 0.559330 | tig0022967:+27241 | Msa1403520:CDS |
| AAGTTGTACCTGCCAAGACT+TGG | 0.560946 | tig0022967:+28156 | Msa1403520:CDS |
| AGAGCCTCCATTTAAGGTGA+AGG | 0.562476 | tig0022967:+29561 | Msa1403520:CDS |
| TCTTGCTCACAATACCTACT+TGG | 0.565718 | tig0022967:+28746 | Msa1403520:CDS |
| AATCAATCCACTGGTCAATG+TGG | 0.571450 | tig0022967:-28101 | None:intergenic |
| CATCAGGAGTTTCCAAGACC+GGG | 0.574741 | tig0022967:-27436 | None:intergenic |
| CAAAGTAGAAGTTGAAGAGG+AGG | 0.579683 | tig0022967:+29046 | Msa1403520:CDS |
| AGATCTGATCGGAAAGCGAA+AGG | 0.582415 | tig0022967:-27053 | None:intergenic |
| GACTCTACTCTAACACCAAG+AGG | 0.583602 | tig0022967:+29141 | Msa1403520:CDS |
| ATCAATCCACTGGTCAATGT+GGG | 0.585165 | tig0022967:-28100 | None:intergenic |
| CTTGGAGGAAGAAGGTCAAG+AGG | 0.586796 | tig0022967:-29092 | None:intergenic |
| CAGCATACCATAGCGAGCAA+TGG | 0.587213 | tig0022967:-27480 | None:intergenic |
| TTCATCAGAGATGTCAACCT+TGG | 0.587509 | tig0022967:-29662 | None:intergenic |
| TTCCGTTGTTGGGAGCGTGA+AGG | 0.588156 | tig0022967:-27198 | None:intergenic |
| CCGGTCTTGGAAACTCCTGA+TGG | 0.589673 | tig0022967:+27437 | Msa1403520:CDS |
| GTTCATGTTGATAAATTGAG+GGG | 0.590470 | tig0022967:-27314 | None:intergenic |
| ATGGCATTACTCTCAAAGAC+AGG | 0.591005 | tig0022967:-27461 | None:intergenic |
| GAGACTAACCAAGGCCGCCA+TGG | 0.591686 | tig0022967:-27104 | None:intergenic |
| AGCCTCCATTTAAGGTGAAG+GGG | 0.592740 | tig0022967:+29563 | Msa1403520:CDS |
| CAACATGAACCCTATTGGAA+AGG | 0.595932 | tig0022967:+27327 | Msa1403520:CDS |
| CTGCGCGTTGGAAGCCATGG+CGG | 0.597364 | tig0022967:+27090 | Msa1403520:exon |
| CTGGGACATGTATGATCCAG+AGG | 0.600612 | tig0022967:+29396 | Msa1403520:CDS |
| ATCCTTCACGCTCCCAACAA+CGG | 0.601253 | tig0022967:+27196 | Msa1403520:CDS |
| TTCAGGCCCACATTGACCAG+TGG | 0.607287 | tig0022967:+28094 | Msa1403520:intron |
| TTGTTTGATTCTCTGAACGA+GGG | 0.612831 | tig0022967:+29979 | Msa1403520:three_prime_UTR |
| TGCTTAGCAGATGGAATAGG+TGG | 0.613551 | tig0022967:-28951 | None:intergenic |
| CAAAAGTATCTCTCAACATG+AGG | 0.614280 | tig0022967:-28864 | None:intergenic |
| ATGTTGTTATAATGTCAGCA+AGG | 0.622569 | tig0022967:-28785 | None:intergenic |
| TTTGTTTGATTCTCTGAACG+AGG | 0.622904 | tig0022967:+29978 | Msa1403520:three_prime_UTR |
| TAACCTGGCCTAATATCTTG+CGG | 0.626332 | tig0022967:-28911 | None:intergenic |
| TGTTGTTATAATGTCAGCAA+GGG | 0.629008 | tig0022967:-28784 | None:intergenic |
| CATGGATGAATGCTATGACA+TGG | 0.631015 | tig0022967:+29624 | Msa1403520:CDS |
| GAAATTGGGCTGGTTGACCA+AGG | 0.645258 | tig0022967:-28889 | None:intergenic |
| GTGACCCTGAACAAGGTTGG+GGG | 0.650105 | tig0022967:+29475 | Msa1403520:CDS |
| TCTCTCGTTTGAGATCTGAT+CGG | 0.653348 | tig0022967:-27064 | None:intergenic |
| AACCCCTTCACCTTAAATGG+AGG | 0.653598 | tig0022967:-29565 | None:intergenic |
| ATGACATGGAGCTCTATGAG+TGG | 0.662196 | tig0022967:+29638 | Msa1403520:CDS |
| TGGGACATGTATGATCCAGA+GGG | 0.668464 | tig0022967:+29397 | Msa1403520:CDS |
| AACAGAATGCCCGACCAAGT+AGG | 0.668821 | tig0022967:-28760 | None:intergenic |
| CTCAACATGAGGAAACTCTG+AGG | 0.714280 | tig0022967:-28853 | None:intergenic |
| AGGCCAGGTTAAGCAGACTG+AGG | 0.721460 | tig0022967:+28923 | Msa1403520:CDS |
| GGAGCTCTATGAGTGGACCA+AGG | 0.731462 | tig0022967:+29645 | Msa1403520:CDS |
| ACTTACTGGAGGAAAGTAGG+CGG | 0.737958 | tig0022967:-28184 | None:intergenic |
| CACCAAGAGGAACTTCCGTG+AGG | 0.751991 | tig0022967:+29154 | Msa1403520:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAAAATAGATTTAATCT+TGG | - | tig0022967:27967-27986 | None:intergenic | 10.0% |
| !!! | AAGATTAAATCTATTTTAAT+TGG | + | tig0022967:27966-27985 | Msa1403520:intron | 10.0% |
| !! | AAAAAAAAAAAAAAACAACA+TGG | - | tig0022967:28216-28235 | None:intergenic | 10.0% |
| !! | AAAACTATAAAAATTAAGTA+AGG | - | tig0022967:30076-30095 | None:intergenic | 10.0% |
| !! | ACCATATAATAATAAAACAA+AGG | + | tig0022967:27655-27674 | Msa1403520:intron | 15.0% |
| !!! | TATCCTTTTTGATATTTATT+GGG | + | tig0022967:27921-27940 | Msa1403520:intron | 15.0% |
| !! | CAATTATATAATATTTGAGT+TGG | + | tig0022967:28295-28314 | Msa1403520:intron | 15.0% |
| !!! | GCCTTTGTTTTATTATTATA+TGG | - | tig0022967:27659-27678 | None:intergenic | 20.0% |
| !!! | GTATCCTTTTTGATATTTAT+TGG | + | tig0022967:27920-27939 | Msa1403520:intron | 20.0% |
| !! | TTTCCCAATAAATATCAAAA+AGG | - | tig0022967:27927-27946 | None:intergenic | 20.0% |
| !! | TATATATAAACCACATACAA+GGG | - | tig0022967:28001-28020 | None:intergenic | 20.0% |
| !!! | TATTTGAATTTTGTTGTTTC+AGG | + | tig0022967:28077-28096 | Msa1403520:intron | 20.0% |
| !! | AAAACATTTGTGAATAATTG+AGG | - | tig0022967:28321-28340 | None:intergenic | 20.0% |
| !!! | TTTTCTGAAATCAATTAGTT+TGG | + | tig0022967:28337-28356 | Msa1403520:intron | 20.0% |
| !! | TAGACACAAATTTCAAAAAA+GGG | - | tig0022967:28441-28460 | None:intergenic | 20.0% |
| !! | TTAGACACAAATTTCAAAAA+AGG | - | tig0022967:28442-28461 | None:intergenic | 20.0% |
| !! | TTGAAAAAAAAAGAAACTAC+AGG | - | tig0022967:29208-29227 | None:intergenic | 20.0% |
| !!! | AATATACTATTCTCTGTTTT+TGG | + | tig0022967:29274-29293 | Msa1403520:intron | 20.0% |
| !! | AAATATAGAATTTGTAACTC+TGG | - | tig0022967:29931-29950 | None:intergenic | 20.0% |
| !! | CAAATTCTATATTTCTCTTT+CGG | + | tig0022967:29937-29956 | Msa1403520:three_prime_UTR | 20.0% |
| !! | TGTGTTTATCATAGAAAAAA+GGG | + | tig0022967:30002-30021 | Msa1403520:three_prime_UTR | 20.0% |
| !!! | AAAAGGGTTAAATATGTTTT+TGG | + | tig0022967:30018-30037 | Msa1403520:three_prime_UTR | 20.0% |
| ! | TAATAATCAACAACAAGTAG+TGG | - | tig0022967:27160-27179 | None:intergenic | 25.0% |
| ! | TATTATTCCTTCTTTCTTTC+AGG | + | tig0022967:27412-27431 | Msa1403520:intron | 25.0% |
| !! | ATCTAAACTAGAATCTTTTC+TGG | - | tig0022967:27790-27809 | None:intergenic | 25.0% |
| ! | CTATATATAAACCACATACA+AGG | - | tig0022967:28002-28021 | None:intergenic | 25.0% |
| ! | TGTATGTGGTTTATATATAG+AGG | + | tig0022967:28002-28021 | Msa1403520:intron | 25.0% |
| ! | GTATGTGGTTTATATATAGA+GGG | + | tig0022967:28003-28022 | Msa1403520:intron | 25.0% |
| ! | TATAATTGCTATCAATACTC+AGG | - | tig0022967:28283-28302 | None:intergenic | 25.0% |
| ! | TGAAATTTGTGTCTAAATGA+AGG | + | tig0022967:28446-28465 | Msa1403520:intron | 25.0% |
| !! | TTGCTGAATATTTTCAAAAG+GGG | - | tig0022967:28516-28535 | None:intergenic | 25.0% |
| !! | CTTGCTGAATATTTTCAAAA+GGG | - | tig0022967:28517-28536 | None:intergenic | 25.0% |
| !!! | ACTTGCTGAATATTTTCAAA+AGG | - | tig0022967:28518-28537 | None:intergenic | 25.0% |
| ! | AGGGAAAATATTCAGTAAAA+GGG | - | tig0022967:28645-28664 | None:intergenic | 25.0% |
| ! | AAGGGAAAATATTCAGTAAA+AGG | - | tig0022967:28646-28665 | None:intergenic | 25.0% |
| ! | TCAGACACAAATTTCAAAAA+GGG | - | tig0022967:28664-28683 | None:intergenic | 25.0% |
| ! | TTCAGACACAAATTTCAAAA+AGG | - | tig0022967:28665-28684 | None:intergenic | 25.0% |
| ! | TGAAATTTGTGTCTGAATAA+AGG | + | tig0022967:28668-28687 | Msa1403520:intron | 25.0% |
| ! | AGAGAATAGTATATTTCCAA+AGG | - | tig0022967:29269-29288 | None:intergenic | 25.0% |
| ! | TTTGGAAAGATGCTTATAAT+TGG | + | tig0022967:29535-29554 | Msa1403520:CDS | 25.0% |
| ! | AGAGATTCCAAAATTTATCA+TGG | + | tig0022967:29606-29625 | Msa1403520:CDS | 25.0% |
| !! | CATTCATCCATGATAAATTT+TGG | - | tig0022967:29616-29635 | None:intergenic | 25.0% |
| ! | GTGTGTTTATCATAGAAAAA+AGG | + | tig0022967:30001-30020 | Msa1403520:three_prime_UTR | 25.0% |
| !! | ACATTTTTGTTTCCGTTGTT+GGG | - | tig0022967:27211-27230 | None:intergenic | 30.0% |
| !! | AACATTTTTGTTTCCGTTGT+TGG | - | tig0022967:27212-27231 | None:intergenic | 30.0% |
| ! | GTTCATGTTGATAAATTGAG+GGG | - | tig0022967:27317-27336 | None:intergenic | 30.0% |
| ! | GGTTCATGTTGATAAATTGA+GGG | - | tig0022967:27318-27337 | None:intergenic | 30.0% |
| TTTATCAACATGAACCCTAT+TGG | + | tig0022967:27322-27341 | Msa1403520:CDS | 30.0% | |
| AATCAGAGAAAAAGTAAGTG+TGG | - | tig0022967:27841-27860 | None:intergenic | 30.0% | |
| ATAGATTTAATCTTGGCAGT+TGG | - | tig0022967:27960-27979 | None:intergenic | 30.0% | |
| TATAGAGGGTAAATTTGCAA+AGG | + | tig0022967:28017-28036 | Msa1403520:intron | 30.0% | |
| ! | TGCTGAATATTTTCAAAAGG+GGG | - | tig0022967:28515-28534 | None:intergenic | 30.0% |
| ! | ATCTCTTTTAACATCTCAGT+TGG | + | tig0022967:28579-28598 | Msa1403520:intron | 30.0% |
| GGGAAAATATTCAGTAAAAG+GGG | - | tig0022967:28644-28663 | None:intergenic | 30.0% | |
| TGTTGTTATAATGTCAGCAA+GGG | - | tig0022967:28787-28806 | None:intergenic | 30.0% | |
| ATGTTGTTATAATGTCAGCA+AGG | - | tig0022967:28788-28807 | None:intergenic | 30.0% | |
| ACAACATCCAACTTGTATAT+TGG | + | tig0022967:28801-28820 | Msa1403520:CDS | 30.0% | |
| !!! | TTTGGTTCATCTTTGGTTTT+GGG | - | tig0022967:28996-29015 | None:intergenic | 30.0% |
| TCATCCAAAATCATCTTACT+TGG | - | tig0022967:29113-29132 | None:intergenic | 30.0% | |
| TGATTGTAGCTTATATCCTT+TGG | + | tig0022967:29250-29269 | Msa1403520:intron | 30.0% | |
| !! | TAGTTTTCACTTAAAGCACT+TGG | - | tig0022967:29758-29777 | None:intergenic | 30.0% |
| TTTAAGTGAAAACTAGTTCC+AGG | + | tig0022967:29763-29782 | Msa1403520:exon | 30.0% | |
| !!! | GTGGTTTTGTCATAACTTTT+TGG | + | tig0022967:29789-29808 | Msa1403520:three_prime_UTR | 30.0% |
| TCATCACTATAGCAGAAAAT+AGG | - | tig0022967:29833-29852 | None:intergenic | 30.0% | |
| ! | ATTTTCTGCTATAGTGATGA+AGG | + | tig0022967:29833-29852 | Msa1403520:three_prime_UTR | 30.0% |
| GCTGAAATTTAAATGCTTTG+TGG | + | tig0022967:29881-29900 | Msa1403520:three_prime_UTR | 30.0% | |
| ! | TTGTGGTAGCTTAATTTTGA+TGG | + | tig0022967:29898-29917 | Msa1403520:three_prime_UTR | 30.0% |
| ! | TAGAAGGTCGCAATTTTATA+GGG | - | tig0022967:30045-30064 | None:intergenic | 30.0% |
| ! | TTAGAAGGTCGCAATTTTAT+AGG | - | tig0022967:30046-30065 | None:intergenic | 30.0% |
| AAGTAAGGACTAAACTTAGA+AGG | - | tig0022967:30061-30080 | None:intergenic | 30.0% | |
| !! | ATTGACTCCTGATTTTCAGA+TGG | + | tig0022967:27276-27295 | Msa1403520:CDS | 35.0% |
| ! | TTGACTCCTGATTTTCAGAT+GGG | + | tig0022967:27277-27296 | Msa1403520:CDS | 35.0% |
| !! | GATAAATTGAGGGGTTTTGT+TGG | - | tig0022967:27308-27327 | None:intergenic | 35.0% |
| ! | GGGTTCATGTTGATAAATTG+AGG | - | tig0022967:27319-27338 | None:intergenic | 35.0% |
| CAATACCTACCTTTCCAATA+GGG | - | tig0022967:27339-27358 | None:intergenic | 35.0% | |
| ACAATACCTACCTTTCCAAT+AGG | - | tig0022967:27340-27359 | None:intergenic | 35.0% | |
| ACAAATTGTTGTGACCCAAT+CGG | - | tig0022967:27597-27616 | None:intergenic | 35.0% | |
| ! | TTGGGTCACAACAATTTGTT+TGG | + | tig0022967:27598-27617 | Msa1403520:CDS | 35.0% |
| TGGATCATCTCTTATTGATC+AGG | + | tig0022967:27618-27637 | Msa1403520:CDS | 35.0% | |
| ATAATAAAACAAAGGCCGTG+TGG | + | tig0022967:27663-27682 | Msa1403520:intron | 35.0% | |
| AGTGTGGAAAAAAGTAAGTG+TGG | - | tig0022967:27825-27844 | None:intergenic | 35.0% | |
| ATTTAATCTTGGCAGTTGGT+TGG | - | tig0022967:27956-27975 | None:intergenic | 35.0% | |
| ATAACTTCCATGAGAACACA+GGG | - | tig0022967:28060-28079 | None:intergenic | 35.0% | |
| AATAACTTCCATGAGAACAC+AGG | - | tig0022967:28061-28080 | None:intergenic | 35.0% | |
| GAGAAGAAAAATCAATCCAC+TGG | - | tig0022967:28113-28132 | None:intergenic | 35.0% | |
| !! | GTGGATTGATTTTTCTTCTC+TGG | + | tig0022967:28113-28132 | Msa1403520:CDS | 35.0% |
| CAGGTACAACTTCATGATAT+TGG | - | tig0022967:28148-28167 | None:intergenic | 35.0% | |
| ! | AGAAGAGATACATGGATTGT+TGG | - | tig0022967:28366-28385 | None:intergenic | 35.0% |
| GAGATGTTAGAAGAGATACA+TGG | - | tig0022967:28374-28393 | None:intergenic | 35.0% | |
| ATCTCTTCTAACATCTCAGA+TGG | + | tig0022967:28377-28396 | Msa1403520:intron | 35.0% | |
| TTTGTGTCTAAATGAAGGAC+TGG | + | tig0022967:28451-28470 | Msa1403520:intron | 35.0% | |
| ! | GCTGAATATTTTCAAAAGGG+GGG | - | tig0022967:28514-28533 | None:intergenic | 35.0% |
| TTGTGTCTGAATAAAGGTAG+AGG | + | tig0022967:28674-28693 | Msa1403520:intron | 35.0% | |
| AGCGAAACCAATATACAAGT+TGG | - | tig0022967:28811-28830 | None:intergenic | 35.0% | |
| !! | TATTGGTTTCGCTAAACTCT+TGG | + | tig0022967:28818-28837 | Msa1403520:CDS | 35.0% |
| !! | CAAAAGTATCTCTCAACATG+AGG | - | tig0022967:28867-28886 | None:intergenic | 35.0% |
| ! | CTCATGTTGAGAGATACTTT+TGG | + | tig0022967:28865-28884 | Msa1403520:CDS | 35.0% |
| CCTAATATCTTGCGGAAATT+GGG | - | tig0022967:28906-28925 | None:intergenic | 35.0% | |
| !! | CTTTGGTTCATCTTTGGTTT+TGG | - | tig0022967:28997-29016 | None:intergenic | 35.0% |
| ! | CACTTTCTTTGGTTCATCTT+TGG | - | tig0022967:29003-29022 | None:intergenic | 35.0% |
| CAAAGATGAACCAAAGAAAG+TGG | + | tig0022967:29001-29020 | Msa1403520:CDS | 35.0% | |
| ! | TCTGATTTAGCCACTTTCTT+TGG | - | tig0022967:29014-29033 | None:intergenic | 35.0% |
| ! | AACTTCTACTTTGGGCTTTT+CGG | - | tig0022967:29039-29058 | None:intergenic | 35.0% |
| TCCTCTTCAACTTCTACTTT+GGG | - | tig0022967:29047-29066 | None:intergenic | 35.0% | |
| ! | TCCTCCAAGTAAGATGATTT+TGG | + | tig0022967:29106-29125 | Msa1403520:CDS | 35.0% |
| TCCAAAATCATCTTACTTGG+AGG | - | tig0022967:29110-29129 | None:intergenic | 35.0% | |
| ! | GTAAGATGATTTTGGATGAC+TGG | + | tig0022967:29114-29133 | Msa1403520:CDS | 35.0% |
| ! | TTCAAGCTTTTGTAGCTTCT+AGG | + | tig0022967:29223-29242 | Msa1403520:intron | 35.0% |
| !! | AATTCCTGTGTTTGATTTGC+AGG | + | tig0022967:29370-29389 | Msa1403520:intron | 35.0% |
| !! | TGTTTGATTTGCAGGATTCT+GGG | + | tig0022967:29378-29397 | Msa1403520:intron | 35.0% |
| !!! | ATTTTGGAATCTCTTGTCCA+CGG | - | tig0022967:29600-29619 | None:intergenic | 35.0% |
| TTATGACAAAACCACAATCC+TGG | - | tig0022967:29784-29803 | None:intergenic | 35.0% | |
| CTATATTTCTCTTTCGGCTT+AGG | + | tig0022967:29943-29962 | Msa1403520:three_prime_UTR | 35.0% | |
| TTTGTTTGATTCTCTGAACG+AGG | + | tig0022967:29978-29997 | Msa1403520:three_prime_UTR | 35.0% | |
| TTGTTTGATTCTCTGAACGA+GGG | + | tig0022967:29979-29998 | Msa1403520:three_prime_UTR | 35.0% | |
| ! | TCTCTCGTTTGAGATCTGAT+CGG | - | tig0022967:27067-27086 | None:intergenic | 40.0% |
| GAACAAAGAGAGACTAACCA+AGG | - | tig0022967:27116-27135 | None:intergenic | 40.0% | |
| CTGATTGCTGCTGAATATGT+TGG | + | tig0022967:27241-27260 | Msa1403520:CDS | 40.0% | |
| GAAACACCCATCTGAAAATC+AGG | - | tig0022967:27286-27305 | None:intergenic | 40.0% | |
| CAACATGAACCCTATTGGAA+AGG | + | tig0022967:27327-27346 | Msa1403520:CDS | 40.0% | |
| ATGAACCCTATTGGAAAGGT+AGG | + | tig0022967:27331-27350 | Msa1403520:intron | 40.0% | |
| ATGGCATTACTCTCAAAGAC+AGG | - | tig0022967:27464-27483 | None:intergenic | 40.0% | |
| CAAATTGTTGTGACCCAATC+GGG | - | tig0022967:27596-27615 | None:intergenic | 40.0% | |
| TTGAAAACCAAGAGACCACA+CGG | - | tig0022967:27681-27700 | None:intergenic | 40.0% | |
| ! | CACAGGGATATGCAATCTTT+TGG | - | tig0022967:28044-28063 | None:intergenic | 40.0% |
| ATCAATCCACTGGTCAATGT+GGG | - | tig0022967:28103-28122 | None:intergenic | 40.0% | |
| AATCAATCCACTGGTCAATG+TGG | - | tig0022967:28104-28123 | None:intergenic | 40.0% | |
| ACAACTTACTGGAGGAAAGT+AGG | - | tig0022967:28190-28209 | None:intergenic | 40.0% | |
| ! | TATTTTCAAAAGGGGGGAGT+TGG | - | tig0022967:28508-28527 | None:intergenic | 40.0% |
| TTCAGTAAAAGGGGAAGAGT+TGG | - | tig0022967:28635-28654 | None:intergenic | 40.0% | |
| TCTTGCTCACAATACCTACT+TGG | + | tig0022967:28746-28765 | Msa1403520:CDS | 40.0% | |
| ! | TGAGAGATACTTTTGGACCT+TGG | + | tig0022967:28872-28891 | Msa1403520:CDS | 40.0% |
| CCCAATTTCCGCAAGATATT+AGG | + | tig0022967:28903-28922 | Msa1403520:CDS | 40.0% | |
| GCCTAATATCTTGCGGAAAT+TGG | - | tig0022967:28907-28926 | None:intergenic | 40.0% | |
| TAACCTGGCCTAATATCTTG+CGG | - | tig0022967:28914-28933 | None:intergenic | 40.0% | |
| ! | ACTTCTACTTTGGGCTTTTC+GGG | - | tig0022967:29038-29057 | None:intergenic | 40.0% |
| CTCCTCTTCAACTTCTACTT+TGG | - | tig0022967:29048-29067 | None:intergenic | 40.0% | |
| CAAAGTAGAAGTTGAAGAGG+AGG | + | tig0022967:29046-29065 | Msa1403520:CDS | 40.0% | |
| TCAAGAGGATTCTTGGGTTT+GGG | - | tig0022967:29080-29099 | None:intergenic | 40.0% | |
| AGAAGGTCAAGAGGATTCTT+GGG | - | tig0022967:29086-29105 | None:intergenic | 40.0% | |
| AAGAAGGTCAAGAGGATTCT+TGG | - | tig0022967:29087-29106 | None:intergenic | 40.0% | |
| TCATCTTACTTGGAGGAAGA+AGG | - | tig0022967:29103-29122 | None:intergenic | 40.0% | |
| GAATCCTGCAAATCAAACAC+AGG | - | tig0022967:29377-29396 | None:intergenic | 40.0% | |
| !! | GTGTTTGATTTGCAGGATTC+TGG | + | tig0022967:29377-29396 | Msa1403520:intron | 40.0% |
| ! | TTCTTTTGTGACCCTGAACA+AGG | + | tig0022967:29468-29487 | Msa1403520:CDS | 40.0% |
| CATGGATGAATGCTATGACA+TGG | + | tig0022967:29624-29643 | Msa1403520:CDS | 40.0% | |
| TTCATCAGAGATGTCAACCT+TGG | - | tig0022967:29665-29684 | None:intergenic | 40.0% | |
| AGCATCTTCAATCATCTGAC+TGG | - | tig0022967:29704-29723 | None:intergenic | 40.0% | |
| TGAAGATGCTGAACCATTTG+AGG | + | tig0022967:29714-29733 | Msa1403520:CDS | 40.0% | |
| GAAGATGCTGAACCATTTGA+GGG | + | tig0022967:29715-29734 | Msa1403520:CDS | 40.0% | |
| GAAAACTAGTTCCAGGATTG+TGG | + | tig0022967:29770-29789 | Msa1403520:exon | 40.0% | |
| AGATCTGATCGGAAAGCGAA+AGG | - | tig0022967:27056-27075 | None:intergenic | 45.0% | |
| ! | TCCTTCTTTCTTTCAGGTCC+CGG | + | tig0022967:27418-27437 | Msa1403520:intron | 45.0% |
| AGTAATGCCATTGCTCGCTA+TGG | + | tig0022967:27473-27492 | Msa1403520:CDS | 45.0% | |
| ! | GTTGAAGCATCCCTTGTATG+TGG | + | tig0022967:27988-28007 | Msa1403520:intron | 45.0% |
| TGCATATCCCTGTGTTCTCA+TGG | + | tig0022967:28050-28069 | Msa1403520:intron | 45.0% | |
| AAGTTGTACCTGCCAAGACT+TGG | + | tig0022967:28156-28175 | Msa1403520:CDS | 45.0% | |
| ACTTACTGGAGGAAAGTAGG+CGG | - | tig0022967:28187-28206 | None:intergenic | 45.0% | |
| CAACATGGCACACAACTTAC+TGG | - | tig0022967:28201-28220 | None:intergenic | 45.0% | |
| GCTCACAATACCTACTTGGT+CGG | + | tig0022967:28750-28769 | Msa1403520:CDS | 45.0% | |
| CTCACAATACCTACTTGGTC+GGG | + | tig0022967:28751-28770 | Msa1403520:CDS | 45.0% | |
| CTCAACATGAGGAAACTCTG+AGG | - | tig0022967:28856-28875 | None:intergenic | 45.0% | |
| ATATCTTGCGGAAATTGGGC+TGG | - | tig0022967:28902-28921 | None:intergenic | 45.0% | |
| TTTCCGCAAGATATTAGGCC+AGG | + | tig0022967:28908-28927 | Msa1403520:CDS | 45.0% | |
| TGCTTAGCAGATGGAATAGG+TGG | - | tig0022967:28954-28973 | None:intergenic | 45.0% | |
| ! | TGCTGCTTAGCAGATGGAAT+AGG | - | tig0022967:28957-28976 | None:intergenic | 45.0% |
| !! | GTTTTGGGCTTAGACTCCTT+AGG | - | tig0022967:28981-29000 | None:intergenic | 45.0% |
| GCCCAAAGTAGAAGTTGAAG+AGG | + | tig0022967:29043-29062 | Msa1403520:CDS | 45.0% | |
| GTCAAGAGGATTCTTGGGTT+TGG | - | tig0022967:29081-29100 | None:intergenic | 45.0% | |
| GACTCTACTCTAACACCAAG+AGG | + | tig0022967:29141-29160 | Msa1403520:CDS | 45.0% | |
| TACCTTTGATTGCGACCTCA+CGG | - | tig0022967:29172-29191 | None:intergenic | 45.0% | |
| !! | GGTCGCAATCAAAGGTATTG+TGG | + | tig0022967:29175-29194 | Msa1403520:intron | 45.0% |
| TGGGACATGTATGATCCAGA+GGG | + | tig0022967:29397-29416 | Msa1403520:CDS | 45.0% | |
| TTTGTGACCCTGAACAAGGT+TGG | + | tig0022967:29472-29491 | Msa1403520:CDS | 45.0% | |
| TTGTGACCCTGAACAAGGTT+GGG | + | tig0022967:29473-29492 | Msa1403520:CDS | 45.0% | |
| AAATCCCCCAACCTTGTTCA+GGG | - | tig0022967:29482-29501 | None:intergenic | 45.0% | |
| ATTTCTGCAGAGGATGGATC+TGG | + | tig0022967:29498-29517 | Msa1403520:CDS | 45.0% | |
| TGGATCAGAGCCTCCATTTA+AGG | + | tig0022967:29555-29574 | Msa1403520:CDS | 45.0% | |
| ! | AGAGCCTCCATTTAAGGTGA+AGG | + | tig0022967:29561-29580 | Msa1403520:CDS | 45.0% |
| ! | GAGCCTCCATTTAAGGTGAA+GGG | + | tig0022967:29562-29581 | Msa1403520:CDS | 45.0% |
| ! | AGCCTCCATTTAAGGTGAAG+GGG | + | tig0022967:29563-29582 | Msa1403520:CDS | 45.0% |
| AACCCCTTCACCTTAAATGG+AGG | - | tig0022967:29568-29587 | None:intergenic | 45.0% | |
| CACAACCCCTTCACCTTAAA+TGG | - | tig0022967:29571-29590 | None:intergenic | 45.0% | |
| ! | CATTTAAGGTGAAGGGGTTG+TGG | + | tig0022967:29569-29588 | Msa1403520:CDS | 45.0% |
| ATGACATGGAGCTCTATGAG+TGG | + | tig0022967:29638-29657 | Msa1403520:CDS | 45.0% | |
| AAAAGAGCCTCTCCCTCAAA+TGG | - | tig0022967:29730-29749 | None:intergenic | 45.0% | |
| ! | ATTTGAGGGAGAGGCTCTTT+TGG | + | tig0022967:29729-29748 | Msa1403520:CDS | 45.0% |
| ATCCTTCACGCTCCCAACAA+CGG | + | tig0022967:27196-27215 | Msa1403520:CDS | 50.0% | |
| ACCGGGACCTGAAAGAAAGA+AGG | - | tig0022967:27422-27441 | None:intergenic | 50.0% | |
| ! | TTTCTTTCAGGTCCCGGTCT+TGG | + | tig0022967:27424-27443 | Msa1403520:intron | 50.0% |
| CATCAGGAGTTTCCAAGACC+GGG | - | tig0022967:27439-27458 | None:intergenic | 50.0% | |
| CCATCAGGAGTTTCCAAGAC+CGG | - | tig0022967:27440-27459 | None:intergenic | 50.0% | |
| CTCTCAAAGACAGGACCATC+AGG | - | tig0022967:27455-27474 | None:intergenic | 50.0% | |
| CAGCATACCATAGCGAGCAA+TGG | - | tig0022967:27483-27502 | None:intergenic | 50.0% | |
| TTTCCTGCAGTTGCCCGATT+GGG | + | tig0022967:27580-27599 | Msa1403520:intron | 50.0% | |
| TAGGCGGCATATCCAAGTCT+TGG | - | tig0022967:28171-28190 | None:intergenic | 50.0% | |
| CATGGCACACAACTTACTGG+AGG | - | tig0022967:28198-28217 | None:intergenic | 50.0% | |
| !! | TTCGCTCAAGAGAGCACTTG+AGG | + | tig0022967:28710-28729 | Msa1403520:CDS | 50.0% |
| AACAGAATGCCCGACCAAGT+AGG | - | tig0022967:28763-28782 | None:intergenic | 50.0% | |
| !! | GAAATTGGGCTGGTTGACCA+AGG | - | tig0022967:28892-28911 | None:intergenic | 50.0% |
| TAGCCTCAGTCTGCTTAACC+TGG | - | tig0022967:28929-28948 | None:intergenic | 50.0% | |
| ! | TTAGGCTGCTGCTTAGCAGA+TGG | - | tig0022967:28963-28982 | None:intergenic | 50.0% |
| ATCTGCTAAGCAGCAGCCTA+AGG | + | tig0022967:28962-28981 | Msa1403520:CDS | 50.0% | |
| GGATTCTTGGGTTTGGGCTT+GGG | - | tig0022967:29074-29093 | None:intergenic | 50.0% | |
| AGGATTCTTGGGTTTGGGCT+TGG | - | tig0022967:29075-29094 | None:intergenic | 50.0% | |
| CTTGGAGGAAGAAGGTCAAG+AGG | - | tig0022967:29095-29114 | None:intergenic | 50.0% | |
| TTCCGTGAGGTCGCAATCAA+AGG | + | tig0022967:29167-29186 | Msa1403520:CDS | 50.0% | |
| CTGGGACATGTATGATCCAG+AGG | + | tig0022967:29396-29415 | Msa1403520:CDS | 50.0% | |
| ATCCAGAGGGATACTCTCTC+TGG | + | tig0022967:29410-29429 | Msa1403520:CDS | 50.0% | |
| !! | AACCAGAGAGAGTATCCCTC+TGG | - | tig0022967:29415-29434 | None:intergenic | 50.0% |
| TGTGACCCTGAACAAGGTTG+GGG | + | tig0022967:29474-29493 | Msa1403520:CDS | 50.0% | |
| GAAATCCCCCAACCTTGTTC+AGG | - | tig0022967:29483-29502 | None:intergenic | 50.0% | |
| !! | CTGGCTCGCAAGTATGCTTT+TGG | + | tig0022967:29517-29536 | Msa1403520:CDS | 50.0% |
| TGCTGAACCATTTGAGGGAG+AGG | + | tig0022967:29720-29739 | Msa1403520:CDS | 50.0% | |
| ! | TTCCGTTGTTGGGAGCGTGA+AGG | - | tig0022967:27201-27220 | None:intergenic | 55.0% |
| CCGGTCTTGGAAACTCCTGA+TGG | + | tig0022967:27437-27456 | Msa1403520:CDS | 55.0% | |
| CTTTCCTGCAGTTGCCCGAT+TGG | + | tig0022967:27579-27598 | Msa1403520:intron | 55.0% | |
| ACAAAGGCCGTGTGGTCTCT+TGG | + | tig0022967:27671-27690 | Msa1403520:intron | 55.0% | |
| TTCAGGCCCACATTGACCAG+TGG | + | tig0022967:28094-28113 | Msa1403520:intron | 55.0% | |
| CGGCATATCCAAGTCTTGGC+AGG | - | tig0022967:28167-28186 | None:intergenic | 55.0% | |
| AGGCCAGGTTAAGCAGACTG+AGG | + | tig0022967:28923-28942 | Msa1403520:CDS | 55.0% | |
| CACCAAGAGGAACTTCCGTG+AGG | + | tig0022967:29154-29173 | Msa1403520:CDS | 55.0% | |
| GACCTCACGGAAGTTCCTCT+TGG | - | tig0022967:29159-29178 | None:intergenic | 55.0% | |
| GTGACCCTGAACAAGGTTGG+GGG | + | tig0022967:29475-29494 | Msa1403520:CDS | 55.0% | |
| AGGTTGGGGGATTTCTGCAG+AGG | + | tig0022967:29488-29507 | Msa1403520:CDS | 55.0% | |
| TGGGGGATTTCTGCAGAGGA+TGG | + | tig0022967:29492-29511 | Msa1403520:CDS | 55.0% | |
| ! | AAGGGGTTGTGGCTTTTCCG+TGG | + | tig0022967:29580-29599 | Msa1403520:CDS | 55.0% |
| GGAGCTCTATGAGTGGACCA+AGG | + | tig0022967:29645-29664 | Msa1403520:CDS | 55.0% | |
| AACGAGAGAGAGCTGCGCGT+TGG | + | tig0022967:27078-27097 | Msa1403520:five_prime_UTR | 60.0% | |
| GAGACTAACCAAGGCCGCCA+TGG | - | tig0022967:27107-27126 | None:intergenic | 60.0% | |
| TGACCCAATCGGGCAACTGC+AGG | - | tig0022967:27586-27605 | None:intergenic | 60.0% | |
| GAGCTGCGCGTTGGAAGCCA+TGG | + | tig0022967:27087-27106 | Msa1403520:exon | 65.0% | |
| CTGCGCGTTGGAAGCCATGG+CGG | + | tig0022967:27090-27109 | Msa1403520:exon | 65.0% | |
| GTTGGAAGCCATGGCGGCCT+TGG | + | tig0022967:27096-27115 | Msa1403520:exon | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0022967 | gene | 27025 | 30103 | 27025 | ID=Msa1403520;Name=Msa1403520 |
| tig0022967 | mRNA | 27025 | 30103 | 27025 | ID=Msa1403520-mRNA-1;Parent=Msa1403520;Name=Msa1403520-mRNA-1;_AED=0.01;_eAED=0.01;_QI=81|1|1|1|1|1|7|332|418 |
| tig0022967 | exon | 27025 | 27117 | 27025 | ID=Msa1403520-mRNA-1:exon:19314;Parent=Msa1403520-mRNA-1 |
| tig0022967 | exon | 27196 | 27348 | 27196 | ID=Msa1403520-mRNA-1:exon:19315;Parent=Msa1403520-mRNA-1 |
| tig0022967 | exon | 27434 | 27494 | 27434 | ID=Msa1403520-mRNA-1:exon:19316;Parent=Msa1403520-mRNA-1 |
| tig0022967 | exon | 27590 | 27639 | 27590 | ID=Msa1403520-mRNA-1:exon:19317;Parent=Msa1403520-mRNA-1 |
| tig0022967 | exon | 28099 | 28200 | 28099 | ID=Msa1403520-mRNA-1:exon:19318;Parent=Msa1403520-mRNA-1 |
| tig0022967 | exon | 28690 | 29188 | 28690 | ID=Msa1403520-mRNA-1:exon:19319;Parent=Msa1403520-mRNA-1 |
| tig0022967 | exon | 29392 | 30103 | 29392 | ID=Msa1403520-mRNA-1:exon:19320;Parent=Msa1403520-mRNA-1 |
| tig0022967 | five_prime_UTR | 27025 | 27105 | 27025 | ID=Msa1403520-mRNA-1:five_prime_utr;Parent=Msa1403520-mRNA-1 |
| tig0022967 | CDS | 27106 | 27117 | 27106 | ID=Msa1403520-mRNA-1:cds;Parent=Msa1403520-mRNA-1 |
| tig0022967 | CDS | 27196 | 27348 | 27196 | ID=Msa1403520-mRNA-1:cds;Parent=Msa1403520-mRNA-1 |
| tig0022967 | CDS | 27434 | 27494 | 27434 | ID=Msa1403520-mRNA-1:cds;Parent=Msa1403520-mRNA-1 |
| tig0022967 | CDS | 27590 | 27639 | 27590 | ID=Msa1403520-mRNA-1:cds;Parent=Msa1403520-mRNA-1 |
| tig0022967 | CDS | 28099 | 28200 | 28099 | ID=Msa1403520-mRNA-1:cds;Parent=Msa1403520-mRNA-1 |
| tig0022967 | CDS | 28690 | 29188 | 28690 | ID=Msa1403520-mRNA-1:cds;Parent=Msa1403520-mRNA-1 |
| tig0022967 | CDS | 29392 | 29771 | 29392 | ID=Msa1403520-mRNA-1:cds;Parent=Msa1403520-mRNA-1 |
| tig0022967 | three_prime_UTR | 29772 | 30103 | 29772 | ID=Msa1403520-mRNA-1:three_prime_utr;Parent=Msa1403520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
