Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1465890 | ACJ84512.1 | 99.580 | 238 | 1 | 0 | 1 | 238 | 1 | 238 | 6.17e-176 | 495 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1465890 | sp|O65751|RSSA_CICAR | 90.377 | 239 | 22 | 1 | 1 | 238 | 1 | 239 | 9.49e-161 | 449 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1465890 | B7FID3 | 99.580 | 238 | 1 | 0 | 1 | 238 | 1 | 238 | 2.95e-176 | 495 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003030 | Msa1465890 | 0.843413 | 1.422914e-58 | -8.615850e-47 |
| Msa0016440 | Msa1465890 | 0.835782 | 1.373267e-56 | -8.615850e-47 |
| Msa0021980 | Msa1465890 | -0.816519 | 5.303763e-52 | -8.615850e-47 |
| Msa0026270 | Msa1465890 | 0.843680 | 1.207326e-58 | -8.615850e-47 |
| Msa0042510 | Msa1465890 | 0.870000 | 2.030123e-66 | -8.615850e-47 |
| Msa0074170 | Msa1465890 | 0.809651 | 1.703243e-50 | -8.615850e-47 |
| Msa0079560 | Msa1465890 | 0.859834 | 3.144251e-63 | -8.615850e-47 |
| Msa0094940 | Msa1465890 | 0.801447 | 8.967442e-49 | -8.615850e-47 |
| Msa0116600 | Msa1465890 | 0.856747 | 2.610323e-62 | -8.615850e-47 |
| Msa0116690 | Msa1465890 | 0.846483 | 2.112038e-59 | -8.615850e-47 |
| Msa1363930 | Msa1465890 | 0.875705 | 2.495111e-68 | -8.615850e-47 |
| Msa1366540 | Msa1465890 | 0.835502 | 1.616319e-56 | -8.615850e-47 |
| Msa1387750 | Msa1465890 | 0.948212 | 1.474709e-106 | -8.615850e-47 |
| Msa1390760 | Msa1465890 | 0.830259 | 3.247563e-55 | -8.615850e-47 |
| Msa1398870 | Msa1465890 | 0.814280 | 1.669217e-51 | -8.615850e-47 |
| Msa1403520 | Msa1465890 | 0.853302 | 2.613803e-61 | -8.615850e-47 |
| Msa1413570 | Msa1465890 | 0.844224 | 8.629955e-59 | -8.615850e-47 |
| Msa1423050 | Msa1465890 | 0.822534 | 2.250553e-53 | -8.615850e-47 |
| Msa1446510 | Msa1465890 | 0.817275 | 3.587425e-52 | -8.615850e-47 |
| Msa1450560 | Msa1465890 | 0.810663 | 1.030432e-50 | -8.615850e-47 |
| Msa1463510 | Msa1465890 | 0.882995 | 6.521317e-71 | -8.615850e-47 |
| Msa0610380 | Msa1465890 | 0.865186 | 7.085507e-65 | -8.615850e-47 |
| Msa0619230 | Msa1465890 | 0.827138 | 1.845745e-54 | -8.615850e-47 |
| Msa0621190 | Msa1465890 | 0.955576 | 2.203510e-113 | -8.615850e-47 |
| Msa0650910 | Msa1465890 | 0.863533 | 2.326467e-64 | -8.615850e-47 |
| Msa0656450 | Msa1465890 | 0.848402 | 6.272552e-60 | -8.615850e-47 |
| Msa0663330 | Msa1465890 | -0.807521 | 4.853814e-50 | -8.615850e-47 |
| Msa0664020 | Msa1465890 | -0.825077 | 5.704434e-54 | -8.615850e-47 |
| Msa0691760 | Msa1465890 | 0.825988 | 3.470526e-54 | -8.615850e-47 |
| Msa0692850 | Msa1465890 | 0.823559 | 1.297794e-53 | -8.615850e-47 |
| Msa0692930 | Msa1465890 | 0.802013 | 6.860564e-49 | -8.615850e-47 |
| Msa0700370 | Msa1465890 | 0.889565 | 2.162644e-73 | -8.615850e-47 |
| Msa0709380 | Msa1465890 | 0.844070 | 9.491661e-59 | -8.615850e-47 |
| Msa0790450 | Msa1465890 | 0.810206 | 1.293372e-50 | -8.615850e-47 |
| Msa0127230 | Msa1465890 | 0.863702 | 2.062119e-64 | -8.615850e-47 |
| Msa0128320 | Msa1465890 | 0.819956 | 8.846579e-53 | -8.615850e-47 |
| Msa0146910 | Msa1465890 | 0.845909 | 3.025611e-59 | -8.615850e-47 |
| Msa0182100 | Msa1465890 | 0.804673 | 1.929295e-49 | -8.615850e-47 |
| Msa0188740 | Msa1465890 | 0.861135 | 1.269153e-63 | -8.615850e-47 |
| Msa0192300 | Msa1465890 | 0.846944 | 1.579242e-59 | -8.615850e-47 |
| Msa1227350 | Msa1465890 | 0.808692 | 2.733124e-50 | -8.615850e-47 |
| Msa1237040 | Msa1465890 | 0.826508 | 2.611185e-54 | -8.615850e-47 |
| Msa1284800 | Msa1465890 | 0.865500 | 5.645222e-65 | -8.615850e-47 |
| Msa1317390 | Msa1465890 | 0.856266 | 3.614188e-62 | -8.615850e-47 |
| Msa1320530 | Msa1465890 | 0.805371 | 1.378698e-49 | -8.615850e-47 |
| Msa0371490 | Msa1465890 | 0.822668 | 2.093871e-53 | -8.615850e-47 |
| Msa0373350 | Msa1465890 | 0.832985 | 6.916223e-56 | -8.615850e-47 |
| Msa0376850 | Msa1465890 | 0.804341 | 2.263246e-49 | -8.615850e-47 |
| Msa0382670 | Msa1465890 | 0.825724 | 4.010372e-54 | -8.615850e-47 |
| Msa0387290 | Msa1465890 | 0.881879 | 1.662200e-70 | -8.615850e-47 |
| Msa0388520 | Msa1465890 | 0.846560 | 2.011234e-59 | -8.615850e-47 |
| Msa0388540 | Msa1465890 | 0.833973 | 3.919280e-56 | -8.615850e-47 |
| Msa0421920 | Msa1465890 | 0.852349 | 4.894349e-61 | -8.615850e-47 |
| Msa0426820 | Msa1465890 | 0.841171 | 5.585487e-58 | -8.615850e-47 |
| Msa0426940 | Msa1465890 | 0.819912 | 9.054347e-53 | -8.615850e-47 |
| Msa0427380 | Msa1465890 | 0.885265 | 9.439542e-72 | -8.615850e-47 |
| Msa0467740 | Msa1465890 | 0.874800 | 5.087858e-68 | -8.615850e-47 |
| Msa0477670 | Msa1465890 | 0.860355 | 2.188211e-63 | -8.615850e-47 |
| Msa0987570 | Msa1465890 | 0.851432 | 8.909968e-61 | -8.615850e-47 |
| Msa0998890 | Msa1465890 | 0.829360 | 5.377226e-55 | -8.615850e-47 |
| Msa1026850 | Msa1465890 | 0.811623 | 6.381863e-51 | -8.615850e-47 |
| Msa1037030 | Msa1465890 | 0.840947 | 6.396491e-58 | -8.615850e-47 |
| Msa1041830 | Msa1465890 | 0.840554 | 8.108277e-58 | -8.615850e-47 |
| Msa1082050 | Msa1465890 | 0.831085 | 2.038027e-55 | -8.615850e-47 |
| Msa0270160 | Msa1465890 | 0.825425 | 4.719758e-54 | -8.615850e-47 |
| Msa0295850 | Msa1465890 | -0.806645 | 7.438612e-50 | -8.615850e-47 |
| Msa0301250 | Msa1465890 | 0.842126 | 3.128197e-58 | -8.615850e-47 |
| Msa0304270 | Msa1465890 | 0.814532 | 1.468319e-51 | -8.615850e-47 |
| Msa0304310 | Msa1465890 | 0.824506 | 7.779513e-54 | -8.615850e-47 |
| Msa0313060 | Msa1465890 | 0.817461 | 3.259149e-52 | -8.615850e-47 |
| Msa0334170 | Msa1465890 | -0.816213 | 6.210339e-52 | -8.615850e-47 |
| Msa1124980 | Msa1465890 | 0.846443 | 2.164840e-59 | -8.615850e-47 |
| Msa1126690 | Msa1465890 | 0.804385 | 2.215887e-49 | -8.615850e-47 |
| Msa1144630 | Msa1465890 | 0.877708 | 5.059403e-69 | -8.615850e-47 |
| Msa1164520 | Msa1465890 | 0.817500 | 3.193807e-52 | -8.615850e-47 |
| Msa1165700 | Msa1465890 | 0.846970 | 1.554364e-59 | -8.615850e-47 |
| Msa1167360 | Msa1465890 | 0.826346 | 2.853062e-54 | -8.615850e-47 |
| Msa1185870 | Msa1465890 | 0.806817 | 6.841997e-50 | -8.615850e-47 |
| Msa0485220 | Msa1465890 | 0.801308 | 9.572874e-49 | -8.615850e-47 |
| Msa0511760 | Msa1465890 | 0.816012 | 6.885023e-52 | -8.615850e-47 |
| Msa0514130 | Msa1465890 | 0.873646 | 1.251122e-67 | -8.615850e-47 |
| Msa0516830 | Msa1465890 | 0.803447 | 3.471654e-49 | -8.615850e-47 |
| Msa0527900 | Msa1465890 | -0.810774 | 9.752857e-51 | -8.615850e-47 |
| Msa0578010 | Msa1465890 | 0.845549 | 3.789390e-59 | -8.615850e-47 |
| Msa0586150 | Msa1465890 | -0.802797 | 4.731213e-49 | -8.615850e-47 |
| Msa0863290 | Msa1465890 | 0.806599 | 7.606803e-50 | -8.615850e-47 |
| Msa0880050 | Msa1465890 | 0.826588 | 2.498498e-54 | -8.615850e-47 |
| Msa0930360 | Msa1465890 | 0.932468 | 8.141934e-95 | -8.615850e-47 |
| Msa0930790 | Msa1465890 | 0.841329 | 5.077589e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1465890 | MtrunA17_Chr3g0129861 | 99.580 | 238 | 1 | 0 | 1 | 238 | 1 | 238 | 7.38e-180 | 495 |
| Msa1465890 | MtrunA17_Chr7g0268451 | 96.996 | 233 | 6 | 1 | 7 | 238 | 3 | 235 | 6.51e-170 | 469 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1465890 | AT1G72370.2 | 86.463 | 229 | 29 | 2 | 1 | 227 | 1 | 229 | 5.33e-147 | 412 |
| Msa1465890 | AT1G72370.1 | 86.463 | 229 | 29 | 2 | 1 | 227 | 1 | 229 | 5.56e-147 | 412 |
| Msa1465890 | AT3G04770.2 | 86.607 | 224 | 27 | 2 | 7 | 228 | 9 | 231 | 5.60e-146 | 409 |
| Msa1465890 | AT3G04770.1 | 88.832 | 197 | 22 | 0 | 7 | 203 | 9 | 205 | 1.47e-132 | 377 |
Find 74 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTGCTCCTTGGCCTCTT+CGG | 0.208222 | tig0045692:-3934 | Msa1465890:intergenic |
| ATAGCATCGGTTGTCTCTTT+TGG | 0.249875 | tig0045692:+3669 | Msa1465890:CDS |
| TTCACCTGATGGTCAGTTCT+AGG | 0.303947 | tig0045692:-3389 | Msa1465890:intergenic |
| GTTCAATCTGCAAGGCCTTA+TGG | 0.305597 | tig0045692:+3236 | Msa1465890:CDS |
| CAATTTGGCAGCTAGGGTTT+TGG | 0.305738 | tig0045692:-2183 | Msa1465890:intergenic |
| TCTTGCTCCTTGGCCTCTTC+GGG | 0.307675 | tig0045692:-3933 | Msa1465890:intergenic |
| GGTATTTATATCATTAATCT+TGG | 0.324341 | tig0045692:+3143 | Msa1465890:intron |
| GAAGGAAACTTGCATTTGAT+TGG | 0.347451 | tig0045692:-3336 | Msa1465890:intergenic |
| TTCATCCTCCTCTTGCTCCT+TGG | 0.369266 | tig0045692:-3943 | Msa1465890:intergenic |
| ATTTGATTGGTAAAGGTTCC+AGG | 0.371234 | tig0045692:-3323 | Msa1465890:intergenic |
| GGCACTCTGTGATAACAATT+TGG | 0.372842 | tig0045692:-2198 | Msa1465890:intergenic |
| CATCAGCAGCCAACATCATC+TGG | 0.391970 | tig0045692:-2328 | Msa1465890:intergenic |
| TCCAAGAGCAGCTTCCTTGA+TGG | 0.403359 | tig0045692:-3561 | Msa1465890:intergenic |
| CCCATCAAGGAAGCTGCTCT+TGG | 0.405552 | tig0045692:+3560 | Msa1465890:CDS |
| TGCTTTCCCTTGTTGTTAGC+GGG | 0.413093 | tig0045692:-3647 | Msa1465890:intergenic |
| CCAAGAGCAGCTTCCTTGAT+GGG | 0.417623 | tig0045692:-3560 | Msa1465890:intergenic |
| TGAAGCAATAACGTTCCATT+TGG | 0.418662 | tig0045692:-2379 | Msa1465890:intergenic |
| ACTGGAGCTAATGCTATTGC+AGG | 0.451070 | tig0045692:+3290 | Msa1465890:CDS |
| GCCATTGCTGACTTCAATGC+TGG | 0.456055 | tig0045692:+3965 | Msa1465890:CDS |
| GTGATAACAATTTGGCAGCT+AGG | 0.461647 | tig0045692:-2190 | Msa1465890:intergenic |
| CGGAGATTCGCTCCCGTCGC+CGG | 0.463684 | tig0045692:+2233 | Msa1465890:five_prime_UTR |
| AACTTGCATTTGATTGGTAA+AGG | 0.474388 | tig0045692:-3330 | Msa1465890:intergenic |
| TGCTGTCTACTGCCGGCGAC+GGG | 0.474415 | tig0045692:-2245 | Msa1465890:intergenic |
| CAGATTGAACAATAATGTCC+TGG | 0.474422 | tig0045692:-3223 | Msa1465890:intergenic |
| TGATAACAATTTGGCAGCTA+GGG | 0.476595 | tig0045692:-2189 | Msa1465890:intergenic |
| CTTAAGTTTGCTCAGTACAC+TGG | 0.477075 | tig0045692:+3272 | Msa1465890:CDS |
| TAAGAACTGCGACTTCCAAA+TGG | 0.482705 | tig0045692:+2364 | Msa1465890:CDS |
| CCAATGTCAACATATCTCAT+AGG | 0.485555 | tig0045692:-3620 | Msa1465890:intergenic |
| AGAGTGCCGCATCCAAGTTT+CGG | 0.494133 | tig0045692:+2213 | Msa1465890:five_prime_UTR |
| GGGAGCGAATCTCCGAAACT+TGG | 0.496426 | tig0045692:-2225 | Msa1465890:intergenic |
| AGAAACTTCAACTAGCTGCC+AGG | 0.503788 | tig0045692:+3177 | Msa1465890:CDS |
| ATGCTTTCCCTTGTTGTTAG+CGG | 0.513106 | tig0045692:-3648 | Msa1465890:intergenic |
| CCTATGAGATATGTTGACAT+TGG | 0.514354 | tig0045692:+3620 | Msa1465890:CDS |
| TGATCCTAGAACTGACCATC+AGG | 0.519085 | tig0045692:+3385 | Msa1465890:CDS |
| AGAACGGCTCTCTGTCCATA+AGG | 0.525873 | tig0045692:-3251 | Msa1465890:intergenic |
| CGAAGAGGCCAAGGAGCAAG+AGG | 0.529876 | tig0045692:+3916 | Msa1465890:CDS |
| TGCTTCAAACGCCGCAACGA+TGG | 0.530057 | tig0045692:+2395 | Msa1465890:CDS |
| GTGTCACAGAAAGCAATAGT+TGG | 0.533846 | tig0045692:-3590 | Msa1465890:intergenic |
| ATCACATCCCACTTAAGACC+TGG | 0.536430 | tig0045692:-3734 | Msa1465890:intergenic |
| TAGAGAACCCGAAGAGGCCA+AGG | 0.540338 | tig0045692:+3907 | Msa1465890:CDS |
| CTATTCGCCCAGGTCTTAAG+TGG | 0.540613 | tig0045692:+3726 | Msa1465890:CDS |
| AGATTGAACAATAATGTCCT+GGG | 0.542615 | tig0045692:-3222 | Msa1465890:intergenic |
| CTGACGGGATGAAAGTTGTT+CGG | 0.545281 | tig0045692:-2282 | Msa1465890:intergenic |
| CAGTAGACAGCATTCAATCA+TGG | 0.547924 | tig0045692:+2256 | Msa1465890:exon |
| GATTGAATGCTGTCTACTGC+CGG | 0.554663 | tig0045692:-2252 | Msa1465890:intergenic |
| CGCAGTTCTTAGTGCCGAGG+TGG | 0.555885 | tig0045692:-2352 | Msa1465890:intergenic |
| ATGCTGTCTACTGCCGGCGA+CGG | 0.556796 | tig0045692:-2246 | Msa1465890:intergenic |
| AGGTCTTAAGTGGGATGTGA+TGG | 0.569141 | tig0045692:+3736 | Msa1465890:CDS |
| TGGAATTCCCGCTAACAACA+AGG | 0.570440 | tig0045692:+3640 | Msa1465890:CDS |
| TGTTTGTTTGCAGCCCATCA+AGG | 0.579519 | tig0045692:+3547 | Msa1465890:intron |
| GCAATGGCATAATCTAGAGC+AGG | 0.581740 | tig0045692:-3969 | Msa1465890:intergenic |
| ATGCGTGGTACTATTCGCCC+AGG | 0.584833 | tig0045692:+3716 | Msa1465890:CDS |
| CTCGATTGCAACGATGACCC+TGG | 0.587596 | tig0045692:-3195 | Msa1465890:intergenic |
| GAGAAGACGAGGCTCACTGA+AGG | 0.589438 | tig0045692:-3354 | Msa1465890:intergenic |
| AACAAGGGAAAGCATAGCAT+CGG | 0.599533 | tig0045692:+3656 | Msa1465890:CDS |
| AGAGGCCAAGGAGCAAGAGG+AGG | 0.600295 | tig0045692:+3919 | Msa1465890:CDS |
| GAAACTTCAACTAGCTGCCA+GGG | 0.600433 | tig0045692:+3178 | Msa1465890:CDS |
| ACATTATTGTTCAATCTGCA+AGG | 0.601975 | tig0045692:+3228 | Msa1465890:CDS |
| ATTGCTGACTTCAATGCTGG+TGG | 0.602149 | tig0045692:+3968 | Msa1465890:CDS |
| TCACATCCCACTTAAGACCT+GGG | 0.607979 | tig0045692:-3733 | Msa1465890:intergenic |
| ATTGCAGGTAGACACACTCC+TGG | 0.622813 | tig0045692:+3305 | Msa1465890:CDS |
| ACCAGCATTGAAGTCAGCAA+TGG | 0.630888 | tig0045692:-3985 | Msa1465890:intergenic |
| TTTGAAAGTTACCATCGTTG+CGG | 0.632625 | tig0045692:-2406 | Msa1465890:intergenic |
| AGTCGCAGTTCTTAGTGCCG+AGG | 0.635317 | tig0045692:-2355 | Msa1465890:intergenic |
| GGAATTCCCGCTAACAACAA+GGG | 0.640044 | tig0045692:+3641 | Msa1465890:CDS |
| AGCTGACATCCAGATGATGT+TGG | 0.641030 | tig0045692:+2319 | Msa1465890:CDS |
| GTACTGAGCAAACTTAAGAA+CGG | 0.651453 | tig0045692:-3267 | Msa1465890:intergenic |
| GAATCTCCGAAACTTGGATG+CGG | 0.653436 | tig0045692:-2219 | Msa1465890:intergenic |
| GATTGAACAATAATGTCCTG+GGG | 0.658645 | tig0045692:-3221 | Msa1465890:intergenic |
| TATTCGCCCAGGTCTTAAGT+GGG | 0.666814 | tig0045692:+3727 | Msa1465890:CDS |
| TCAGTGAGGATGAGAAGACG+AGG | 0.674872 | tig0045692:-3365 | Msa1465890:intergenic |
| TTGGCTGCTGATGTCCACCT+CGG | 0.712261 | tig0045692:+2338 | Msa1465890:CDS |
| ATTGAACAATAATGTCCTGG+GGG | 0.723405 | tig0045692:-3220 | Msa1465880:intergenic |
| GGTCAGTTCTAGGATCAGTG+AGG | 0.760014 | tig0045692:-3379 | Msa1465880:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTGTTTTTTGTTTTAATTT+AGG | + | tig0045692:3122-3141 | Msa1465890:intron | 10.0% |
| !!! | TTTGTTTTTTGTTTTAATTT+AGG | + | tig0045692:3122-3141 | Msa1465890:intron | 10.0% |
| !!! | AGGATGATTAATTACAATTT+TGG | + | tig0045692:2588-2607 | Msa1465890:intron | 20.0% |
| !!! | TTTTATAGGTTAAAGCTTAT+AGG | - | tig0045692:2756-2775 | Msa1465890:intergenic | 20.0% |
| !! | AAAACTCATATTTAAGCTAA+TGG | - | tig0045692:2902-2921 | Msa1465890:intergenic | 20.0% |
| !!! | GTTTTGTTTTGTTTGTTTTA+CGG | + | tig0045692:2945-2964 | Msa1465890:intron | 20.0% |
| !! | TTGTAATGATGATATAATCA+AGG | - | tig0045692:3029-3048 | Msa1465890:intergenic | 20.0% |
| !! | GGTATTTATATCATTAATCT+TGG | + | tig0045692:3143-3162 | Msa1465890:intron | 20.0% |
| !!! | TTGCTTGTTAATATCAATTA+TGG | + | tig0045692:3431-3450 | Msa1465890:intron | 20.0% |
| !!! | GCTATATTTTTTGTTGTTTT+AGG | + | tig0045692:3453-3472 | Msa1465890:intron | 20.0% |
| !! | TTAAGAAAAACATTAGACAA+TGG | - | tig0045692:3865-3884 | Msa1465890:intergenic | 20.0% |
| !!! | AGGATGATTAATTACAATTT+TGG | + | tig0045692:2588-2607 | Msa1465890:intron | 20.0% |
| !!! | TTTTATAGGTTAAAGCTTAT+AGG | - | tig0045692:2756-2775 | Msa1465890:intergenic | 20.0% |
| !! | AAAACTCATATTTAAGCTAA+TGG | - | tig0045692:2902-2921 | Msa1465890:intergenic | 20.0% |
| !!! | GTTTTGTTTTGTTTGTTTTA+CGG | + | tig0045692:2945-2964 | Msa1465890:intron | 20.0% |
| !! | TTGTAATGATGATATAATCA+AGG | - | tig0045692:3029-3048 | Msa1465890:intergenic | 20.0% |
| !! | GGTATTTATATCATTAATCT+TGG | + | tig0045692:3143-3162 | Msa1465890:intron | 20.0% |
| !!! | TTGCTTGTTAATATCAATTA+TGG | + | tig0045692:3431-3450 | Msa1465890:intron | 20.0% |
| !!! | GCTATATTTTTTGTTGTTTT+AGG | + | tig0045692:3453-3472 | Msa1465890:intron | 20.0% |
| !! | TTAAGAAAAACATTAGACAA+TGG | - | tig0045692:3865-3884 | Msa1465890:intergenic | 20.0% |
| ! | ATTAAGAAACACAATACTAG+AGG | - | tig0045692:2479-2498 | Msa1465890:intergenic | 25.0% |
| !! | TCGTTAACAATCTAGTTTAT+AGG | + | tig0045692:2568-2587 | Msa1465890:intron | 25.0% |
| ! | AATGTTCAGTAGACTAAATA+TGG | + | tig0045692:3088-3107 | Msa1465890:intron | 25.0% |
| ! | TCATTAATCTTGGAAAAACT+TGG | + | tig0045692:3153-3172 | Msa1465890:CDS | 25.0% |
| ! | CATTAATCTTGGAAAAACTT+GGG | + | tig0045692:3154-3173 | Msa1465890:CDS | 25.0% |
| ! | GGCTTATATATTTCCTTTAT+TGG | + | tig0045692:3474-3493 | Msa1465890:intron | 25.0% |
| !! | TCTAATGTTTTTCTTAATGC+AGG | + | tig0045692:3868-3887 | Msa1465890:intron | 25.0% |
| ! | ATTAAGAAACACAATACTAG+AGG | - | tig0045692:2479-2498 | Msa1465890:intergenic | 25.0% |
| !! | TCGTTAACAATCTAGTTTAT+AGG | + | tig0045692:2568-2587 | Msa1465890:intron | 25.0% |
| ! | AATGTTCAGTAGACTAAATA+TGG | + | tig0045692:3088-3107 | Msa1465890:intron | 25.0% |
| ! | TCATTAATCTTGGAAAAACT+TGG | + | tig0045692:3153-3172 | Msa1465890:CDS | 25.0% |
| ! | CATTAATCTTGGAAAAACTT+GGG | + | tig0045692:3154-3173 | Msa1465890:CDS | 25.0% |
| ! | GGCTTATATATTTCCTTTAT+TGG | + | tig0045692:3474-3493 | Msa1465890:intron | 25.0% |
| !! | TCTAATGTTTTTCTTAATGC+AGG | + | tig0045692:3868-3887 | Msa1465890:intron | 25.0% |
| TGTTAAGAATCGAGATTAAG+TGG | + | tig0045692:2527-2546 | Msa1465890:intron | 30.0% | |
| ! | AATTCTGCAAAACGGTTTTT+AGG | + | tig0045692:2654-2673 | Msa1465890:intron | 30.0% |
| !!! | CCAATGCTACACTTTTTTAT+AGG | - | tig0045692:2770-2789 | Msa1465890:intergenic | 30.0% |
| ! | CCTATAAAAAAGTGTAGCAT+TGG | + | tig0045692:2767-2786 | Msa1465890:intron | 30.0% |
| ACACAAGGTGTAACTTAATT+GGG | - | tig0045692:2999-3018 | Msa1465890:intergenic | 30.0% | |
| AACACAAGGTGTAACTTAAT+TGG | - | tig0045692:3000-3019 | Msa1465890:intergenic | 30.0% | |
| ATTAAGTTACACCTTGTGTT+TGG | + | tig0045692:3000-3019 | Msa1465890:intron | 30.0% | |
| TTAAGTTACACCTTGTGTTT+GGG | + | tig0045692:3001-3020 | Msa1465890:intron | 30.0% | |
| AGATTGAACAATAATGTCCT+GGG | - | tig0045692:3225-3244 | Msa1465890:intergenic | 30.0% | |
| ACATTATTGTTCAATCTGCA+AGG | + | tig0045692:3228-3247 | Msa1465890:CDS | 30.0% | |
| AACTTGCATTTGATTGGTAA+AGG | - | tig0045692:3333-3352 | Msa1465890:intergenic | 30.0% | |
| ATTAACAAGCAAACATGTCA+AGG | - | tig0045692:3423-3442 | Msa1465890:intergenic | 30.0% | |
| GCACAAATATCAACCAATAA+AGG | - | tig0045692:3490-3509 | Msa1465890:intergenic | 30.0% | |
| !! | TTGTGCATTTCGCTTTTATA+AGG | + | tig0045692:3504-3523 | Msa1465890:intron | 30.0% |
| TGTTAAGAATCGAGATTAAG+TGG | + | tig0045692:2527-2546 | Msa1465890:intron | 30.0% | |
| ! | AATTCTGCAAAACGGTTTTT+AGG | + | tig0045692:2654-2673 | Msa1465890:intron | 30.0% |
| !!! | CCAATGCTACACTTTTTTAT+AGG | - | tig0045692:2770-2789 | Msa1465890:intergenic | 30.0% |
| ! | CCTATAAAAAAGTGTAGCAT+TGG | + | tig0045692:2767-2786 | Msa1465890:intron | 30.0% |
| ACACAAGGTGTAACTTAATT+GGG | - | tig0045692:2999-3018 | Msa1465890:intergenic | 30.0% | |
| AACACAAGGTGTAACTTAAT+TGG | - | tig0045692:3000-3019 | Msa1465890:intergenic | 30.0% | |
| ATTAAGTTACACCTTGTGTT+TGG | + | tig0045692:3000-3019 | Msa1465890:intron | 30.0% | |
| TTAAGTTACACCTTGTGTTT+GGG | + | tig0045692:3001-3020 | Msa1465890:intron | 30.0% | |
| AGATTGAACAATAATGTCCT+GGG | - | tig0045692:3225-3244 | Msa1465890:intergenic | 30.0% | |
| ACATTATTGTTCAATCTGCA+AGG | + | tig0045692:3228-3247 | Msa1465890:CDS | 30.0% | |
| AACTTGCATTTGATTGGTAA+AGG | - | tig0045692:3333-3352 | Msa1465890:intergenic | 30.0% | |
| ATTAACAAGCAAACATGTCA+AGG | - | tig0045692:3423-3442 | Msa1465890:intergenic | 30.0% | |
| GCACAAATATCAACCAATAA+AGG | - | tig0045692:3490-3509 | Msa1465890:intergenic | 30.0% | |
| !! | TTGTGCATTTCGCTTTTATA+AGG | + | tig0045692:3504-3523 | Msa1465890:intron | 30.0% |
| TGATAACAATTTGGCAGCTA+GGG | - | tig0045692:2192-2211 | Msa1396960:intergenic | 35.0% | |
| TGAAGCAATAACGTTCCATT+TGG | - | tig0045692:2382-2401 | Msa1465890:intergenic | 35.0% | |
| TTTGAAAGTTACCATCGTTG+CGG | - | tig0045692:2409-2428 | Msa1465890:intergenic | 35.0% | |
| ! | TGTTCACTTTCATTTTGTGC+TGG | + | tig0045692:2621-2640 | Msa1465890:intron | 35.0% |
| ! | CTGTTTGGAATTCTGCAAAA+CGG | + | tig0045692:2646-2665 | Msa1465890:intron | 35.0% |
| CAAAACAAAACGCAACACTA+TGG | - | tig0045692:2936-2955 | Msa1465890:intergenic | 35.0% | |
| ATTGAACAATAATGTCCTGG+GGG | - | tig0045692:3223-3242 | Msa1465890:intergenic | 35.0% | |
| GATTGAACAATAATGTCCTG+GGG | - | tig0045692:3224-3243 | Msa1465890:intergenic | 35.0% | |
| CAGATTGAACAATAATGTCC+TGG | - | tig0045692:3226-3245 | Msa1465890:intergenic | 35.0% | |
| GTACTGAGCAAACTTAAGAA+CGG | - | tig0045692:3270-3289 | Msa1465890:intergenic | 35.0% | |
| ATTTGATTGGTAAAGGTTCC+AGG | - | tig0045692:3326-3345 | Msa1465890:intergenic | 35.0% | |
| GAAGGAAACTTGCATTTGAT+TGG | - | tig0045692:3339-3358 | Msa1465890:intergenic | 35.0% | |
| AGCAAACATGTCAAGGATAA+TGG | - | tig0045692:3416-3435 | Msa1465890:intergenic | 35.0% | |
| CCAATGTCAACATATCTCAT+AGG | - | tig0045692:3623-3642 | Msa1465890:intergenic | 35.0% | |
| CCTATGAGATATGTTGACAT+TGG | + | tig0045692:3620-3639 | Msa1465890:CDS | 35.0% | |
| TGATAACAATTTGGCAGCTA+GGG | - | tig0045692:2192-2211 | Msa1465890:intergenic | 35.0% | |
| TGAAGCAATAACGTTCCATT+TGG | - | tig0045692:2382-2401 | Msa1465890:intergenic | 35.0% | |
| TTTGAAAGTTACCATCGTTG+CGG | - | tig0045692:2409-2428 | Msa1465890:intergenic | 35.0% | |
| ! | TGTTCACTTTCATTTTGTGC+TGG | + | tig0045692:2621-2640 | Msa1465890:intron | 35.0% |
| ! | CTGTTTGGAATTCTGCAAAA+CGG | + | tig0045692:2646-2665 | Msa1465890:intron | 35.0% |
| CAAAACAAAACGCAACACTA+TGG | - | tig0045692:2936-2955 | Msa1465890:intergenic | 35.0% | |
| ATTGAACAATAATGTCCTGG+GGG | - | tig0045692:3223-3242 | Msa1465890:intergenic | 35.0% | |
| GATTGAACAATAATGTCCTG+GGG | - | tig0045692:3224-3243 | Msa1465890:intergenic | 35.0% | |
| CAGATTGAACAATAATGTCC+TGG | - | tig0045692:3226-3245 | Msa1465890:intergenic | 35.0% | |
| GTACTGAGCAAACTTAAGAA+CGG | - | tig0045692:3270-3289 | Msa1465890:intergenic | 35.0% | |
| ATTTGATTGGTAAAGGTTCC+AGG | - | tig0045692:3326-3345 | Msa1465890:intergenic | 35.0% | |
| GAAGGAAACTTGCATTTGAT+TGG | - | tig0045692:3339-3358 | Msa1465890:intergenic | 35.0% | |
| AGCAAACATGTCAAGGATAA+TGG | - | tig0045692:3416-3435 | Msa1465890:intergenic | 35.0% | |
| CCAATGTCAACATATCTCAT+AGG | - | tig0045692:3623-3642 | Msa1465890:intergenic | 35.0% | |
| CCTATGAGATATGTTGACAT+TGG | + | tig0045692:3620-3639 | Msa1465890:CDS | 35.0% | |
| GTGATAACAATTTGGCAGCT+AGG | - | tig0045692:2193-2212 | Msa1396960:intergenic | 40.0% | |
| GGCACTCTGTGATAACAATT+TGG | - | tig0045692:2201-2220 | Msa1396960:intergenic | 40.0% | |
| CAGTAGACAGCATTCAATCA+TGG | + | tig0045692:2256-2275 | Msa1465890:exon | 40.0% | |
| !! | TTCTTTTTGAGAGAGCTGAC+GGG | - | tig0045692:2300-2319 | Msa1465890:intergenic | 40.0% |
| !! | CTTCTTTTTGAGAGAGCTGA+CGG | - | tig0045692:2301-2320 | Msa1465890:intergenic | 40.0% |
| TAAGAACTGCGACTTCCAAA+TGG | + | tig0045692:2364-2383 | Msa1465890:CDS | 40.0% | |
| !! | AACGGTTTTTAGGCTCTGTT+TGG | + | tig0045692:2664-2683 | Msa1465890:intron | 40.0% |
| ! | TTTTAGGCTCTGTTTGGTAG+CGG | + | tig0045692:2670-2689 | Msa1465890:intron | 40.0% |
| AATCAAGGAACCCAAACACA+AGG | - | tig0045692:3014-3033 | Msa1465890:intergenic | 40.0% | |
| ! | CTTAAGTTTGCTCAGTACAC+TGG | + | tig0045692:3272-3291 | Msa1465890:CDS | 40.0% |
| ! | AGGATAATGGTTTCACCTGA+TGG | - | tig0045692:3403-3422 | Msa1465890:intergenic | 40.0% |
| GTGTCACAGAAAGCAATAGT+TGG | - | tig0045692:3593-3612 | Msa1465890:intergenic | 40.0% | |
| !! | ATGCTTTCCCTTGTTGTTAG+CGG | - | tig0045692:3651-3670 | Msa1465890:intergenic | 40.0% |
| ! | AACAAGGGAAAGCATAGCAT+CGG | + | tig0045692:3656-3675 | Msa1465890:CDS | 40.0% |
| !!! | ATAGCATCGGTTGTCTCTTT+TGG | + | tig0045692:3669-3688 | Msa1465890:CDS | 40.0% |
| ACACAGTGCTGTGTAAAGAA+GGG | - | tig0045692:3842-3861 | Msa1465890:intergenic | 40.0% | |
| ! | CTTTTATAGAGAACCCGAAG+AGG | + | tig0045692:3901-3920 | Msa1465890:CDS | 40.0% |
| GTGATAACAATTTGGCAGCT+AGG | - | tig0045692:2193-2212 | Msa1465890:intergenic | 40.0% | |
| GGCACTCTGTGATAACAATT+TGG | - | tig0045692:2201-2220 | Msa1465890:intergenic | 40.0% | |
| CAGTAGACAGCATTCAATCA+TGG | + | tig0045692:2256-2275 | Msa1465890:exon | 40.0% | |
| !! | TTCTTTTTGAGAGAGCTGAC+GGG | - | tig0045692:2300-2319 | Msa1465890:intergenic | 40.0% |
| !! | CTTCTTTTTGAGAGAGCTGA+CGG | - | tig0045692:2301-2320 | Msa1465890:intergenic | 40.0% |
| TAAGAACTGCGACTTCCAAA+TGG | + | tig0045692:2364-2383 | Msa1465890:CDS | 40.0% | |
| !! | AACGGTTTTTAGGCTCTGTT+TGG | + | tig0045692:2664-2683 | Msa1465890:intron | 40.0% |
| ! | TTTTAGGCTCTGTTTGGTAG+CGG | + | tig0045692:2670-2689 | Msa1465890:intron | 40.0% |
| AATCAAGGAACCCAAACACA+AGG | - | tig0045692:3014-3033 | Msa1465890:intergenic | 40.0% | |
| ! | CTTAAGTTTGCTCAGTACAC+TGG | + | tig0045692:3272-3291 | Msa1465890:CDS | 40.0% |
| ! | AGGATAATGGTTTCACCTGA+TGG | - | tig0045692:3403-3422 | Msa1465890:intergenic | 40.0% |
| GTGTCACAGAAAGCAATAGT+TGG | - | tig0045692:3593-3612 | Msa1465890:intergenic | 40.0% | |
| !! | ATGCTTTCCCTTGTTGTTAG+CGG | - | tig0045692:3651-3670 | Msa1465890:intergenic | 40.0% |
| ! | AACAAGGGAAAGCATAGCAT+CGG | + | tig0045692:3656-3675 | Msa1465890:CDS | 40.0% |
| !!! | ATAGCATCGGTTGTCTCTTT+TGG | + | tig0045692:3669-3688 | Msa1465890:CDS | 40.0% |
| ACACAGTGCTGTGTAAAGAA+GGG | - | tig0045692:3842-3861 | Msa1465890:intergenic | 40.0% | |
| ! | CTTTTATAGAGAACCCGAAG+AGG | + | tig0045692:3901-3920 | Msa1465890:CDS | 40.0% |
| ! | CAATTTGGCAGCTAGGGTTT+TGG | - | tig0045692:2186-2205 | Msa1396960:intergenic | 45.0% |
| GAATCTCCGAAACTTGGATG+CGG | - | tig0045692:2222-2241 | Msa1465890:intergenic | 45.0% | |
| GATTGAATGCTGTCTACTGC+CGG | - | tig0045692:2255-2274 | Msa1465890:intergenic | 45.0% | |
| CTGACGGGATGAAAGTTGTT+CGG | - | tig0045692:2285-2304 | Msa1465890:intergenic | 45.0% | |
| AGCTGACATCCAGATGATGT+TGG | + | tig0045692:2319-2338 | Msa1465890:CDS | 45.0% | |
| !!! | CATTTTGTGCTGGCTCTGTT+TGG | + | tig0045692:2631-2650 | Msa1465890:intron | 45.0% |
| CGCAACACTATGGATCTGTT+TGG | - | tig0045692:2926-2945 | Msa1465890:intergenic | 45.0% | |
| AGAAACTTCAACTAGCTGCC+AGG | + | tig0045692:3177-3196 | Msa1465890:CDS | 45.0% | |
| GAAACTTCAACTAGCTGCCA+GGG | + | tig0045692:3178-3197 | Msa1465890:CDS | 45.0% | |
| GTTCAATCTGCAAGGCCTTA+TGG | + | tig0045692:3236-3255 | Msa1465890:CDS | 45.0% | |
| ACTGGAGCTAATGCTATTGC+AGG | + | tig0045692:3290-3309 | Msa1465890:CDS | 45.0% | |
| TGATCCTAGAACTGACCATC+AGG | + | tig0045692:3385-3404 | Msa1465890:CDS | 45.0% | |
| TTCACCTGATGGTCAGTTCT+AGG | - | tig0045692:3392-3411 | Msa1465890:intergenic | 45.0% | |
| TGTTTGTTTGCAGCCCATCA+AGG | + | tig0045692:3547-3566 | Msa1465890:intron | 45.0% | |
| TGGAATTCCCGCTAACAACA+AGG | + | tig0045692:3640-3659 | Msa1465890:CDS | 45.0% | |
| GGAATTCCCGCTAACAACAA+GGG | + | tig0045692:3641-3660 | Msa1465890:CDS | 45.0% | |
| !! | TGCTTTCCCTTGTTGTTAGC+GGG | - | tig0045692:3650-3669 | Msa1465890:intergenic | 45.0% |
| !!! | CGGTTGTCTCTTTTGGCTTT+TGG | + | tig0045692:3676-3695 | Msa1465890:CDS | 45.0% |
| !!! | GTCTCTTTTGGCTTTTGGCT+AGG | + | tig0045692:3681-3700 | Msa1465890:CDS | 45.0% |
| !!! | CTTTTGGCTTTTGGCTAGGA+TGG | + | tig0045692:3685-3704 | Msa1465890:CDS | 45.0% |
| TATTCGCCCAGGTCTTAAGT+GGG | + | tig0045692:3727-3746 | Msa1465890:CDS | 45.0% | |
| TCACATCCCACTTAAGACCT+GGG | - | tig0045692:3736-3755 | Msa1465890:intergenic | 45.0% | |
| ATCACATCCCACTTAAGACC+TGG | - | tig0045692:3737-3756 | Msa1465890:intergenic | 45.0% | |
| AGGTCTTAAGTGGGATGTGA+TGG | + | tig0045692:3736-3755 | Msa1465890:CDS | 45.0% | |
| GACACAGTGCTGTGTAAAGA+AGG | - | tig0045692:3843-3862 | Msa1465890:intergenic | 45.0% | |
| ! | GCAATGGCATAATCTAGAGC+AGG | - | tig0045692:3953-3972 | Msa1465890:intergenic | 45.0% |
| ! | ACCAGCATTGAAGTCAGCAA+TGG | - | tig0045692:3969-3988 | Msa1465890:intergenic | 45.0% |
| !! | ATTGCTGACTTCAATGCTGG+TGG | + | tig0045692:3968-3987 | Msa1465890:CDS | 45.0% |
| ! | CAATTTGGCAGCTAGGGTTT+TGG | - | tig0045692:2186-2205 | Msa1465890:intergenic | 45.0% |
| GAATCTCCGAAACTTGGATG+CGG | - | tig0045692:2222-2241 | Msa1465890:intergenic | 45.0% | |
| GATTGAATGCTGTCTACTGC+CGG | - | tig0045692:2255-2274 | Msa1465890:intergenic | 45.0% | |
| CTGACGGGATGAAAGTTGTT+CGG | - | tig0045692:2285-2304 | Msa1465890:intergenic | 45.0% | |
| AGCTGACATCCAGATGATGT+TGG | + | tig0045692:2319-2338 | Msa1465890:CDS | 45.0% | |
| !!! | CATTTTGTGCTGGCTCTGTT+TGG | + | tig0045692:2631-2650 | Msa1465890:intron | 45.0% |
| CGCAACACTATGGATCTGTT+TGG | - | tig0045692:2926-2945 | Msa1465890:intergenic | 45.0% | |
| AGAAACTTCAACTAGCTGCC+AGG | + | tig0045692:3177-3196 | Msa1465890:CDS | 45.0% | |
| GAAACTTCAACTAGCTGCCA+GGG | + | tig0045692:3178-3197 | Msa1465890:CDS | 45.0% | |
| GTTCAATCTGCAAGGCCTTA+TGG | + | tig0045692:3236-3255 | Msa1465890:CDS | 45.0% | |
| ACTGGAGCTAATGCTATTGC+AGG | + | tig0045692:3290-3309 | Msa1465890:CDS | 45.0% | |
| TGATCCTAGAACTGACCATC+AGG | + | tig0045692:3385-3404 | Msa1465890:CDS | 45.0% | |
| TTCACCTGATGGTCAGTTCT+AGG | - | tig0045692:3392-3411 | Msa1465890:intergenic | 45.0% | |
| TGTTTGTTTGCAGCCCATCA+AGG | + | tig0045692:3547-3566 | Msa1465890:intron | 45.0% | |
| TGGAATTCCCGCTAACAACA+AGG | + | tig0045692:3640-3659 | Msa1465890:CDS | 45.0% | |
| GGAATTCCCGCTAACAACAA+GGG | + | tig0045692:3641-3660 | Msa1465890:CDS | 45.0% | |
| !! | TGCTTTCCCTTGTTGTTAGC+GGG | - | tig0045692:3650-3669 | Msa1465890:intergenic | 45.0% |
| !!! | CGGTTGTCTCTTTTGGCTTT+TGG | + | tig0045692:3676-3695 | Msa1465890:CDS | 45.0% |
| !!! | GTCTCTTTTGGCTTTTGGCT+AGG | + | tig0045692:3681-3700 | Msa1465890:CDS | 45.0% |
| !!! | CTTTTGGCTTTTGGCTAGGA+TGG | + | tig0045692:3685-3704 | Msa1465890:CDS | 45.0% |
| TATTCGCCCAGGTCTTAAGT+GGG | + | tig0045692:3727-3746 | Msa1465890:CDS | 45.0% | |
| TCACATCCCACTTAAGACCT+GGG | - | tig0045692:3736-3755 | Msa1465890:intergenic | 45.0% | |
| ATCACATCCCACTTAAGACC+TGG | - | tig0045692:3737-3756 | Msa1465890:intergenic | 45.0% | |
| AGGTCTTAAGTGGGATGTGA+TGG | + | tig0045692:3736-3755 | Msa1465890:CDS | 45.0% | |
| GACACAGTGCTGTGTAAAGA+AGG | - | tig0045692:3843-3862 | Msa1465890:intergenic | 45.0% | |
| ! | GCAATGGCATAATCTAGAGC+AGG | - | tig0045692:3953-3972 | Msa1465890:intergenic | 45.0% |
| ! | ACCAGCATTGAAGTCAGCAA+TGG | - | tig0045692:3969-3988 | Msa1465890:intergenic | 45.0% |
| !! | ATTGCTGACTTCAATGCTGG+TGG | + | tig0045692:3968-3987 | Msa1465890:CDS | 45.0% |
| !! | AGAGTGCCGCATCCAAGTTT+CGG | + | tig0045692:2213-2232 | Msa1465890:five_prime_UTR | 50.0% |
| CATCAGCAGCCAACATCATC+TGG | - | tig0045692:2331-2350 | Msa1465890:intergenic | 50.0% | |
| AGAACGGCTCTCTGTCCATA+AGG | - | tig0045692:3254-3273 | Msa1465890:intergenic | 50.0% | |
| ATTGCAGGTAGACACACTCC+TGG | + | tig0045692:3305-3324 | Msa1465890:CDS | 50.0% | |
| TCAGTGAGGATGAGAAGACG+AGG | - | tig0045692:3368-3387 | Msa1465890:intergenic | 50.0% | |
| !! | GGTCAGTTCTAGGATCAGTG+AGG | - | tig0045692:3382-3401 | Msa1465890:intergenic | 50.0% |
| CCAAGAGCAGCTTCCTTGAT+GGG | - | tig0045692:3563-3582 | Msa1465890:intergenic | 50.0% | |
| TCCAAGAGCAGCTTCCTTGA+TGG | - | tig0045692:3564-3583 | Msa1465890:intergenic | 50.0% | |
| !! | AGGATGGTTTTGCAGATGCG+TGG | + | tig0045692:3701-3720 | Msa1465890:CDS | 50.0% |
| CTATTCGCCCAGGTCTTAAG+TGG | + | tig0045692:3726-3745 | Msa1465890:CDS | 50.0% | |
| TTCATCCTCCTCTTGCTCCT+TGG | - | tig0045692:3927-3946 | Msa1465890:intergenic | 50.0% | |
| !! | GCCATTGCTGACTTCAATGC+TGG | + | tig0045692:3965-3984 | Msa1465890:CDS | 50.0% |
| !! | AGAGTGCCGCATCCAAGTTT+CGG | + | tig0045692:2213-2232 | Msa1465890:five_prime_UTR | 50.0% |
| CATCAGCAGCCAACATCATC+TGG | - | tig0045692:2331-2350 | Msa1465890:intergenic | 50.0% | |
| AGAACGGCTCTCTGTCCATA+AGG | - | tig0045692:3254-3273 | Msa1465890:intergenic | 50.0% | |
| ATTGCAGGTAGACACACTCC+TGG | + | tig0045692:3305-3324 | Msa1465890:CDS | 50.0% | |
| TCAGTGAGGATGAGAAGACG+AGG | - | tig0045692:3368-3387 | Msa1465890:intergenic | 50.0% | |
| !! | GGTCAGTTCTAGGATCAGTG+AGG | - | tig0045692:3382-3401 | Msa1465890:intergenic | 50.0% |
| CCAAGAGCAGCTTCCTTGAT+GGG | - | tig0045692:3563-3582 | Msa1465890:intergenic | 50.0% | |
| TCCAAGAGCAGCTTCCTTGA+TGG | - | tig0045692:3564-3583 | Msa1465890:intergenic | 50.0% | |
| !! | AGGATGGTTTTGCAGATGCG+TGG | + | tig0045692:3701-3720 | Msa1465890:CDS | 50.0% |
| CTATTCGCCCAGGTCTTAAG+TGG | + | tig0045692:3726-3745 | Msa1465890:CDS | 50.0% | |
| TTCATCCTCCTCTTGCTCCT+TGG | - | tig0045692:3927-3946 | Msa1465890:intergenic | 50.0% | |
| !! | GCCATTGCTGACTTCAATGC+TGG | + | tig0045692:3965-3984 | Msa1465890:CDS | 50.0% |
| GGGAGCGAATCTCCGAAACT+TGG | - | tig0045692:2228-2247 | Msa1465890:intergenic | 55.0% | |
| TTGGCTGCTGATGTCCACCT+CGG | + | tig0045692:2338-2357 | Msa1465890:CDS | 55.0% | |
| AGTCGCAGTTCTTAGTGCCG+AGG | - | tig0045692:2358-2377 | Msa1465890:intergenic | 55.0% | |
| TGCTTCAAACGCCGCAACGA+TGG | + | tig0045692:2395-2414 | Msa1465890:CDS | 55.0% | |
| CTCGATTGCAACGATGACCC+TGG | - | tig0045692:3198-3217 | Msa1465890:intergenic | 55.0% | |
| GAGAAGACGAGGCTCACTGA+AGG | - | tig0045692:3357-3376 | Msa1465890:intergenic | 55.0% | |
| CCCATCAAGGAAGCTGCTCT+TGG | + | tig0045692:3560-3579 | Msa1465890:CDS | 55.0% | |
| ATGCGTGGTACTATTCGCCC+AGG | + | tig0045692:3716-3735 | Msa1465890:CDS | 55.0% | |
| TAGAGAACCCGAAGAGGCCA+AGG | + | tig0045692:3907-3926 | Msa1465890:CDS | 55.0% | |
| TCTTGCTCCTTGGCCTCTTC+GGG | - | tig0045692:3917-3936 | Msa1465890:intergenic | 55.0% | |
| CTCTTGCTCCTTGGCCTCTT+CGG | - | tig0045692:3918-3937 | Msa1465890:intergenic | 55.0% | |
| GGGAGCGAATCTCCGAAACT+TGG | - | tig0045692:2228-2247 | Msa1465890:intergenic | 55.0% | |
| TTGGCTGCTGATGTCCACCT+CGG | + | tig0045692:2338-2357 | Msa1465890:CDS | 55.0% | |
| AGTCGCAGTTCTTAGTGCCG+AGG | - | tig0045692:2358-2377 | Msa1465890:intergenic | 55.0% | |
| TGCTTCAAACGCCGCAACGA+TGG | + | tig0045692:2395-2414 | Msa1465890:CDS | 55.0% | |
| CTCGATTGCAACGATGACCC+TGG | - | tig0045692:3198-3217 | Msa1465890:intergenic | 55.0% | |
| GAGAAGACGAGGCTCACTGA+AGG | - | tig0045692:3357-3376 | Msa1465890:intergenic | 55.0% | |
| CCCATCAAGGAAGCTGCTCT+TGG | + | tig0045692:3560-3579 | Msa1465890:CDS | 55.0% | |
| ATGCGTGGTACTATTCGCCC+AGG | + | tig0045692:3716-3735 | Msa1465890:CDS | 55.0% | |
| TAGAGAACCCGAAGAGGCCA+AGG | + | tig0045692:3907-3926 | Msa1465890:CDS | 55.0% | |
| TCTTGCTCCTTGGCCTCTTC+GGG | - | tig0045692:3917-3936 | Msa1465890:intergenic | 55.0% | |
| CTCTTGCTCCTTGGCCTCTT+CGG | - | tig0045692:3918-3937 | Msa1465890:intergenic | 55.0% | |
| ATGCTGTCTACTGCCGGCGA+CGG | - | tig0045692:2249-2268 | Msa1465890:intergenic | 60.0% | |
| ! | CGCAGTTCTTAGTGCCGAGG+TGG | - | tig0045692:2355-2374 | Msa1465890:intergenic | 60.0% |
| CGTTGCAATCGAGAACCCCC+AGG | + | tig0045692:3205-3224 | Msa1465890:CDS | 60.0% | |
| CGAAGAGGCCAAGGAGCAAG+AGG | + | tig0045692:3916-3935 | Msa1465890:CDS | 60.0% | |
| AGAGGCCAAGGAGCAAGAGG+AGG | + | tig0045692:3919-3938 | Msa1465890:CDS | 60.0% | |
| ATGCTGTCTACTGCCGGCGA+CGG | - | tig0045692:2249-2268 | Msa1465890:intergenic | 60.0% | |
| ! | CGCAGTTCTTAGTGCCGAGG+TGG | - | tig0045692:2355-2374 | Msa1465890:intergenic | 60.0% |
| CGTTGCAATCGAGAACCCCC+AGG | + | tig0045692:3205-3224 | Msa1465890:CDS | 60.0% | |
| CGAAGAGGCCAAGGAGCAAG+AGG | + | tig0045692:3916-3935 | Msa1465890:CDS | 60.0% | |
| AGAGGCCAAGGAGCAAGAGG+AGG | + | tig0045692:3919-3938 | Msa1465890:CDS | 60.0% | |
| TGCTGTCTACTGCCGGCGAC+GGG | - | tig0045692:2248-2267 | Msa1465890:intergenic | 65.0% | |
| TGCTGTCTACTGCCGGCGAC+GGG | - | tig0045692:2248-2267 | Msa1465890:intergenic | 65.0% | |
| CGGAGATTCGCTCCCGTCGC+CGG | + | tig0045692:2233-2252 | Msa1465890:five_prime_UTR | 70.0% | |
| CGGAGATTCGCTCCCGTCGC+CGG | + | tig0045692:2233-2252 | Msa1465890:five_prime_UTR | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0045692 | gene | 2177 | 4000 | 2177 | ID=Msa1465890;Name=Msa1465890 |
| tig0045692 | mRNA | 2177 | 4000 | 2177 | ID=Msa1465890-mRNA-1;Parent=Msa1465890;Name=Msa1465890-mRNA-1;_AED=0.15;_eAED=0.15;_QI=98|1|1|1|1|1|4|0|238 |
| tig0045692 | exon | 2177 | 2416 | 2177 | ID=Msa1465890-mRNA-1:exon:24919;Parent=Msa1465890-mRNA-1 |
| tig0045692 | exon | 3144 | 3406 | 3144 | ID=Msa1465890-mRNA-1:exon:24920;Parent=Msa1465890-mRNA-1 |
| tig0045692 | exon | 3560 | 3757 | 3560 | ID=Msa1465890-mRNA-1:exon:24921;Parent=Msa1465890-mRNA-1 |
| tig0045692 | exon | 3890 | 4000 | 3890 | ID=Msa1465890-mRNA-1:exon:24922;Parent=Msa1465890-mRNA-1 |
| tig0045692 | five_prime_UTR | 2177 | 2274 | 2177 | ID=Msa1465890-mRNA-1:five_prime_utr;Parent=Msa1465890-mRNA-1 |
| tig0045692 | CDS | 2275 | 2416 | 2275 | ID=Msa1465890-mRNA-1:cds;Parent=Msa1465890-mRNA-1 |
| tig0045692 | CDS | 3144 | 3406 | 3144 | ID=Msa1465890-mRNA-1:cds;Parent=Msa1465890-mRNA-1 |
| tig0045692 | CDS | 3560 | 3757 | 3560 | ID=Msa1465890-mRNA-1:cds;Parent=Msa1465890-mRNA-1 |
| tig0045692 | CDS | 3890 | 4000 | 3890 | ID=Msa1465890-mRNA-1:cds;Parent=Msa1465890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
