AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0693200

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0693200 MtrunA17_Chr4g0043511 95.283 530 12 2 13 542 33 549 0.0 1028
Msa0693200 MtrunA17_Chr7g0223961 51.327 452 193 6 46 496 23 448 2.07e-163 472
Msa0693200 MtrunA17_Chr4g0034901 42.331 489 252 10 18 501 1 464 2.23e-134 398
Msa0693200 MtrunA17_Chr1g0146831 57.057 333 137 4 30 360 16 344 9.51e-132 388
Msa0693200 MtrunA17_Chr3g0144531 42.062 485 246 9 21 501 6 459 6.32e-131 389
Msa0693200 MtrunA17_Chr5g0439251 40.355 451 250 8 45 490 24 460 3.49e-109 334
Msa0693200 MtrunA17_Chr1g0177171 40.998 461 256 12 46 497 38 491 6.00e-109 334
Msa0693200 MtrunA17_Chr6g0487261 37.605 476 256 12 27 496 14 454 1.63e-102 318
Msa0693200 MtrunA17_Chr8g0389741 38.596 456 244 10 46 496 28 452 3.87e-102 317
Msa0693200 MtrunA17_Chr1g0155001 44.037 327 176 6 46 367 24 348 1.52e-94 294
Msa0693200 MtrunA17_Chr7g0234821 36.681 458 258 9 47 497 27 459 1.01e-93 293
Msa0693200 MtrunA17_Chr3g0110371 35.893 521 285 15 26 537 5 485 7.10e-91 287
Msa0693200 MtrunA17_Chr8g0339191 33.471 484 283 11 25 497 4 459 2.04e-90 285
Msa0693200 MtrunA17_Chr1g0161011 35.903 493 269 13 25 508 3 457 2.21e-90 286
Msa0693200 MtrunA17_Chr4g0075031 34.969 489 271 12 46 526 45 494 7.41e-90 285
Msa0693200 MtrunA17_Chr8g0378621 35.174 489 267 13 24 504 10 456 1.14e-88 281
Msa0693200 MtrunA17_Chr1g0189111 46.201 329 171 6 37 362 22 347 2.33e-88 278
Msa0693200 MtrunA17_Chr2g0321511 40.443 361 208 6 18 375 1 357 4.75e-86 271
Msa0693200 MtrunA17_Chr4g0043851 42.614 352 189 8 17 363 7 350 6.81e-86 271
Msa0693200 MtrunA17_Chr3g0121271 34.454 476 265 11 29 496 10 446 3.96e-85 272
Msa0693200 MtrunA17_Chr5g0434591 34.765 489 266 13 18 497 1 445 1.47e-84 271
Msa0693200 MtrunA17_Chr3g0119541 45.000 320 170 6 46 361 26 343 7.94e-84 265
Msa0693200 MtrunA17_Chr4g0026321 42.188 320 180 5 47 363 30 347 4.39e-83 263
Msa0693200 MtrunA17_Chr4g0046311 33.333 477 281 9 23 490 3 451 7.39e-83 266
Msa0693200 MtrunA17_Chr2g0285901 40.058 342 199 5 25 363 3 341 2.61e-82 262
Msa0693200 MtrunA17_Chr4g0003281 38.950 362 209 9 8 362 2 358 3.46e-76 246
Msa0693200 MtrunA17_Chr7g0250301 40.810 321 179 7 41 359 3 314 7.70e-72 232
Msa0693200 MtrunA17_Chr4g0064021 38.438 320 191 6 47 362 27 344 4.49e-70 229
Msa0693200 MtrunA17_Chr4g0062771 30.943 488 286 18 23 497 8 457 5.69e-62 211
Msa0693200 MtrunA17_Chr3g0138741 32.008 503 278 19 8 496 2 454 1.93e-59 204
Msa0693200 MtrunA17_Chr4g0039021 39.583 288 160 8 70 353 4 281 4.11e-57 192
Msa0693200 MtrunA17_Chr4g0039071 37.195 328 183 11 46 364 25 338 1.20e-56 194
Msa0693200 MtrunA17_Chr4g0038941 36.677 319 184 10 46 361 52 355 1.06e-55 191
Msa0693200 MtrunA17_Chr2g0306311 28.682 516 291 19 26 502 10 487 3.41e-55 194
Msa0693200 MtrunA17_Chr1g0174261 39.865 296 164 10 76 366 1 287 6.22e-55 188
Msa0693200 MtrunA17_Chr4g0038961 34.412 340 203 11 26 361 3 326 2.97e-54 186
Msa0693200 MtrunA17_Chr7g0253091 28.454 485 293 16 26 496 6 450 3.56e-54 190
Msa0693200 MtrunA17_Chr2g0290821 29.810 473 280 16 46 506 28 460 8.90e-54 189
Msa0693200 MtrunA17_Chr4g0039011 34.169 319 193 9 46 361 42 346 1.84e-53 185
Msa0693200 MtrunA17_Chr2g0294601 34.043 376 223 14 1 370 22 378 1.89e-53 186
Msa0693200 MtrunA17_Chr4g0038971 33.628 339 207 10 26 361 3 326 5.28e-53 183
Msa0693200 MtrunA17_Chr1g0148391 30.515 485 279 20 26 496 8 448 6.18e-53 187
Msa0693200 MtrunA17_Chr4g0038981 33.531 337 206 10 26 359 3 324 1.38e-52 182
Msa0693200 MtrunA17_Chr6g0461601 29.399 466 276 16 46 496 26 453 6.02e-52 184
Msa0693200 MtrunA17_Chr7g0250321 37.979 287 167 7 27 311 9 286 1.18e-50 175
Msa0693200 MtrunA17_Chr3g0129341 28.687 495 292 19 25 503 13 462 3.65e-50 179
Msa0693200 MtrunA17_Chr4g0076581 30.579 484 278 19 46 516 33 471 1.24e-49 178
Msa0693200 MtrunA17_Chr8g0383311 28.632 468 289 14 46 504 43 474 2.56e-49 177
Msa0693200 MtrunA17_Chr2g0294591 34.234 333 202 12 36 362 20 341 9.01e-48 170
Msa0693200 MtrunA17_Chr4g0069801 27.479 484 295 19 27 496 10 451 8.24e-45 165
Msa0693200 MtrunA17_Chr3g0105981 28.352 455 268 17 38 479 19 428 3.07e-39 148
Msa0693200 MtrunA17_Chr5g0436361 33.447 293 184 8 73 360 63 349 7.77e-39 145
Msa0693200 MtrunA17_Chr8g0378381 45.455 88 48 0 410 497 29 116 1.63e-24 98.6
Msa0693200 MtrunA17_Chr8g0378401 46.667 90 46 1 410 499 29 116 3.53e-24 97.8
Msa0693200 MtrunA17_Chr1g0154991 46.429 84 45 0 413 496 20 103 7.63e-23 93.6
Msa0693200 MtrunA17_Chr8g0378361 42.424 99 56 1 410 507 27 125 3.12e-22 94.4
Msa0693200 MtrunA17_Chr4g0040911 47.674 86 44 1 413 497 37 122 9.00e-22 92.8
Msa0693200 MtrunA17_Chr3g0096451 42.500 120 64 4 381 497 79 196 8.78e-21 92.0
Msa0693200 MtrunA17_Chr5g0443331 42.105 133 68 5 372 503 74 198 9.50e-21 92.4
Msa0693200 MtrunA17_Chr8g0378371 43.678 87 46 1 411 497 31 114 1.23e-20 87.4
Msa0693200 MtrunA17_Chr8g0381081 43.750 96 51 2 413 505 57 152 2.48e-20 88.6
Msa0693200 MtrunA17_Chr4g0061401 42.529 87 49 1 410 496 21 106 1.58e-19 87.4
Msa0693200 MtrunA17_Chr7g0271411 48.837 86 42 2 413 497 160 244 4.80e-19 88.2
Msa0693200 MtrunA17_Chr4g0043151 40.449 89 52 1 410 497 18 106 4.86e-18 82.4
Msa0693200 MtrunA17_Chr1g0213651 39.535 86 52 0 413 498 276 361 8.32e-18 85.1
Msa0693200 MtrunA17_Chr1g0193131 44.444 81 44 1 411 491 418 497 9.69e-18 86.7
Msa0693200 MtrunA17_Chr2g0313891 38.372 86 52 1 411 496 28 112 2.41e-17 78.2
Msa0693200 MtrunA17_Chr2g0304061 42.391 92 52 1 412 503 157 247 3.24e-17 82.8
Msa0693200 MtrunA17_Chr5g0401301 39.370 127 69 6 378 496 288 414 3.84e-17 84.0
Msa0693200 MtrunA17_Chr5g0419121 39.080 87 51 1 413 497 22 108 1.01e-16 80.1
Msa0693200 MtrunA17_Chr3g0120401 36.905 84 53 0 413 496 157 240 2.01e-16 79.0
Msa0693200 MtrunA17_Chr4g0076141 37.500 80 49 1 412 490 12 91 2.19e-16 74.7
Msa0693200 MtrunA17_Chr4g0018861 45.918 98 47 3 268 364 84 176 2.86e-16 78.2
Msa0693200 MtrunA17_Chr4g0018771 42.857 98 50 3 268 364 86 178 5.06e-16 77.4
Msa0693200 MtrunA17_Chr5g0447651 34.483 87 56 1 413 498 30 116 7.42e-15 71.2
Msa0693200 MtrunA17_Chr4g0076131 35.227 88 56 1 412 498 27 114 1.02e-14 70.5
Msa0693200 MtrunA17_Chr2g0294581 26.570 207 134 8 46 242 76 274 1.12e-13 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0693200 AT5G24318.1 52.766 470 187 7 30 496 18 455 9.93e-169 486
Msa0693200 AT5G24318.2 53.233 464 182 7 30 490 18 449 2.60e-167 482
Msa0693200 AT3G55430.1 48.791 455 195 9 46 496 29 449 5.13e-146 427
Msa0693200 AT3G46570.1 63.188 345 117 5 23 364 8 345 7.07e-146 424
Msa0693200 AT2G16230.1 41.257 509 263 10 40 542 19 497 2.78e-135 402
Msa0693200 AT2G39640.1 42.659 504 249 8 24 526 8 472 1.05e-134 402
Msa0693200 AT2G39640.1 45.745 94 51 0 408 501 455 548 7.72e-24 105
Msa0693200 AT5G24318.4 58.284 338 130 5 30 364 18 347 2.70e-132 390
Msa0693200 AT4G34480.1 43.789 475 230 8 27 497 7 448 1.97e-130 390
Msa0693200 AT5G24318.3 52.035 344 134 6 156 496 1 316 1.82e-120 357
Msa0693200 AT2G05790.1 42.117 463 241 13 45 497 24 469 1.14e-111 340
Msa0693200 AT4G26830.1 40.206 485 252 11 18 497 1 452 1.33e-108 332
Msa0693200 AT4G26830.2 40.481 457 238 9 46 497 29 456 4.10e-107 328
Msa0693200 AT5G55180.1 40.393 458 240 10 46 497 27 457 2.26e-106 327
Msa0693200 AT5G55180.2 40.798 451 234 11 46 490 27 450 2.96e-104 321
Msa0693200 AT4G34480.3 45.777 367 164 6 134 497 3 337 6.13e-102 313
Msa0693200 AT5G42720.1 42.969 384 207 9 28 402 8 388 1.10e-100 311
Msa0693200 AT4G34480.2 46.921 341 175 6 27 363 7 345 3.42e-97 299
Msa0693200 AT4G29360.1 37.988 487 289 11 25 506 7 485 8.15e-97 304
Msa0693200 AT4G29360.2 38.627 466 274 10 46 506 37 495 3.44e-95 300
Msa0693200 AT5G56590.1 35.644 505 278 15 46 542 26 491 6.72e-93 293
Msa0693200 AT2G01630.1 36.481 466 251 11 46 503 23 451 7.79e-93 293
Msa0693200 AT1G30080.2 42.980 349 194 5 17 362 7 353 1.29e-90 283
Msa0693200 AT1G30080.1 42.980 349 194 5 17 362 7 353 1.65e-90 284
Msa0693200 AT1G32860.1 46.471 340 175 6 28 362 11 348 1.69e-90 284
Msa0693200 AT2G01630.3 36.203 453 244 11 46 490 23 438 4.81e-90 283
Msa0693200 AT2G27500.2 43.789 322 175 6 46 363 29 348 1.29e-87 275
Msa0693200 AT2G27500.1 43.789 322 175 6 46 363 29 348 2.07e-87 275
Msa0693200 AT1G11820.2 35.435 460 252 12 46 497 44 466 4.51e-87 278
Msa0693200 AT3G13560.4 35.421 463 245 11 46 496 26 446 2.02e-86 276
Msa0693200 AT3G13560.1 35.421 463 245 11 46 496 26 446 2.02e-86 276
Msa0693200 AT3G13560.2 35.421 463 245 11 46 496 26 446 2.02e-86 276
Msa0693200 AT3G13560.5 35.421 463 245 11 46 496 26 446 2.02e-86 276
Msa0693200 AT3G13560.3 35.421 463 245 11 46 496 26 446 2.02e-86 276
Msa0693200 AT3G23770.1 34.490 461 268 8 46 497 37 472 3.88e-85 272
Msa0693200 AT4G14080.1 34.279 458 270 7 46 497 42 474 4.01e-85 272
Msa0693200 AT1G11820.3 35.320 453 248 12 46 490 44 459 5.85e-85 271
Msa0693200 AT1G66250.1 34.934 458 254 9 46 496 32 452 3.08e-84 271
Msa0693200 AT4G18340.2 41.449 345 197 5 24 365 12 354 5.79e-84 266
Msa0693200 AT4G18340.1 41.520 342 195 5 24 362 12 351 1.65e-83 265
Msa0693200 AT5G42100.1 44.000 325 174 7 45 363 26 348 1.59e-81 261
Msa0693200 AT5G42100.2 44.000 325 174 7 45 363 26 348 2.08e-81 261
Msa0693200 AT3G07320.1 33.188 458 272 8 47 497 26 456 1.26e-79 257
Msa0693200 AT3G15800.1 43.202 331 179 8 47 371 44 371 3.59e-79 254
Msa0693200 AT2G26600.1 41.562 320 181 6 47 362 35 352 5.37e-78 251
Msa0693200 AT2G27500.3 47.036 253 130 4 114 363 19 270 1.51e-71 231
Msa0693200 AT2G01630.2 34.901 404 218 11 46 441 23 389 1.63e-69 229
Msa0693200 AT1G11820.1 38.006 321 189 8 46 359 44 361 2.05e-66 220
Msa0693200 AT2G26600.2 43.651 252 138 4 114 362 8 258 2.55e-63 209
Msa0693200 AT5G20390.1 39.766 342 191 11 24 359 9 341 6.12e-63 210
Msa0693200 AT4G16260.1 37.243 341 197 10 26 361 4 332 1.94e-61 206
Msa0693200 AT3G24330.1 30.595 487 289 15 23 497 16 465 1.36e-60 208
Msa0693200 AT3G61810.1 35.522 335 197 8 36 361 45 369 1.40e-60 204
Msa0693200 AT5G20340.1 37.994 329 187 11 39 361 36 353 3.52e-57 195
Msa0693200 AT4G16260.2 37.821 312 177 10 53 359 2 301 5.84e-57 193
Msa0693200 AT5G58090.1 30.670 463 272 16 46 497 22 446 8.54e-57 197
Msa0693200 AT3G57260.2 33.521 355 217 10 13 361 11 352 1.28e-56 194
Msa0693200 AT3G57260.1 33.728 338 209 9 26 361 12 336 1.39e-56 193
Msa0693200 AT1G64760.1 29.400 483 294 14 25 497 4 449 2.49e-54 191
Msa0693200 AT1G64760.2 29.400 483 294 14 25 497 4 449 2.49e-54 191
Msa0693200 AT3G57270.1 36.025 322 189 12 46 361 27 337 2.77e-54 187
Msa0693200 AT2G19440.2 30.303 462 275 14 46 497 21 445 5.38e-54 190
Msa0693200 AT2G19440.1 30.303 462 275 14 46 497 21 445 5.38e-54 190
Msa0693200 AT5G20330.1 35.613 351 205 12 21 361 5 344 6.22e-54 186
Msa0693200 AT5G64790.1 28.283 495 306 16 25 508 7 463 5.78e-53 187
Msa0693200 AT4G17180.1 30.515 485 285 17 27 504 9 448 8.19e-53 187
Msa0693200 AT4G31140.1 28.601 486 289 18 22 496 10 448 1.01e-52 187
Msa0693200 AT5G18220.1 27.423 485 295 16 29 497 13 456 6.83e-52 184
Msa0693200 AT5G20870.1 28.713 505 299 20 26 510 10 473 6.07e-51 182
Msa0693200 AT5G20560.1 35.608 337 197 10 29 353 8 336 2.48e-50 176
Msa0693200 AT1G77780.1 34.018 341 212 9 25 361 1 332 8.69e-50 176
Msa0693200 AT1G33220.1 35.260 346 199 11 23 361 7 334 1.77e-49 174
Msa0693200 AT3G04010.1 26.349 482 305 14 28 497 15 458 9.97e-48 173
Msa0693200 AT5G58480.1 28.986 483 277 18 46 511 26 459 4.13e-47 171
Msa0693200 AT3G57240.1 34.969 326 194 13 39 361 28 338 7.55e-46 164
Msa0693200 AT1G77790.1 32.853 347 216 10 23 361 4 341 6.10e-44 159
Msa0693200 AT3G55780.1 33.562 292 186 6 73 359 61 349 7.76e-43 157
Msa0693200 AT5G63225.1 49.425 87 44 0 410 496 22 108 8.83e-27 105
Msa0693200 AT4G09090.1 49.438 89 45 0 408 496 26 114 2.74e-25 100
Msa0693200 AT5G63230.1 46.512 86 46 0 411 496 24 109 4.73e-25 100
Msa0693200 AT1G18650.1 45.652 92 50 0 410 501 18 109 7.50e-25 102
Msa0693200 AT1G18650.2 46.154 91 49 0 410 500 18 108 1.41e-24 99.8
Msa0693200 AT5G63240.1 47.126 87 43 1 413 496 40 126 1.76e-23 96.3
Msa0693200 AT1G66855.1 45.455 88 47 1 410 496 23 110 2.77e-23 95.1
Msa0693200 AT4G09464.1 43.820 89 50 0 408 496 26 114 3.73e-23 95.1
Msa0693200 AT4G09467.1 43.820 89 50 0 408 496 26 114 3.73e-23 95.1
Msa0693200 AT4G09465.1 43.820 89 50 0 408 496 26 114 4.16e-23 94.7
Msa0693200 AT4G09462.1 43.820 89 50 0 408 496 24 112 4.59e-23 94.7
Msa0693200 AT2G30933.1 39.007 141 72 5 411 538 80 219 8.53e-22 94.7
Msa0693200 AT3G58100.1 38.596 114 64 3 413 523 41 151 1.24e-21 92.8
Msa0693200 AT5G53600.1 43.478 92 51 1 405 496 21 111 2.08e-21 90.1
Msa0693200 AT4G09466.1 41.573 89 52 0 408 496 26 114 2.19e-21 90.1
Msa0693200 AT1G66870.1 43.011 93 52 1 405 496 18 110 2.31e-21 89.7
Msa0693200 AT1G66870.2 43.011 93 52 1 405 496 45 137 2.56e-21 90.5
Msa0693200 AT3G58100.2 38.596 114 64 3 413 523 117 227 4.80e-21 93.2
Msa0693200 AT5G61130.1 45.455 88 48 0 410 497 18 105 5.12e-21 91.7
Msa0693200 AT4G13600.1 36.275 102 65 0 413 514 61 162 5.84e-21 92.4
Msa0693200 AT2G43670.1 46.512 86 45 1 413 498 35 119 6.86e-21 89.0
Msa0693200 AT5G53610.1 43.678 87 48 1 410 496 25 110 7.04e-21 88.6
Msa0693200 AT1G78520.1 42.857 91 51 1 407 497 26 115 9.02e-21 88.2
Msa0693200 AT1G29380.1 47.674 86 43 2 412 496 147 231 1.07e-20 93.6
Msa0693200 AT1G29380.3 47.674 86 43 2 412 496 147 231 1.28e-20 92.0
Msa0693200 AT1G66852.1 43.011 93 51 2 405 496 18 109 1.29e-19 84.7
Msa0693200 AT5G63250.1 42.708 96 52 1 404 496 33 128 1.66e-19 85.1
Msa0693200 AT5G08000.2 44.706 85 47 0 413 497 40 124 3.02e-19 87.0
Msa0693200 AT1G29380.4 48.750 80 39 2 412 490 147 225 3.48e-19 87.0
Msa0693200 AT1G29380.2 48.750 80 39 2 412 490 147 225 3.48e-19 87.0
Msa0693200 AT5G08000.1 44.318 88 49 0 410 497 18 105 3.61e-19 86.3
Msa0693200 AT4G05430.1 37.374 99 61 1 399 496 9 107 1.80e-18 82.8
Msa0693200 AT4G05430.3 37.374 99 61 1 399 496 34 132 2.94e-18 82.8
Msa0693200 AT5G67460.1 39.000 100 54 2 404 496 278 377 7.03e-18 86.3
Msa0693200 AT2G30933.2 46.914 81 41 2 411 490 80 159 1.18e-17 80.9
Msa0693200 AT2G30933.3 46.914 81 41 2 411 490 80 159 1.18e-17 80.9
Msa0693200 AT2G29735.1 38.202 89 53 1 410 496 28 116 2.11e-17 78.6
Msa0693200 AT4G05430.2 38.710 93 56 1 399 490 34 126 2.29e-17 79.0
Msa0693200 AT2G04910.2 36.364 88 55 1 412 498 14 101 2.71e-17 78.2
Msa0693200 AT2G43660.2 42.045 88 50 1 413 499 35 122 3.06e-17 78.6
Msa0693200 AT2G43660.1 42.045 88 50 1 413 499 34 121 3.32e-17 78.2
Msa0693200 AT4G16165.1 40.909 88 51 1 410 496 23 110 3.47e-17 77.8
Msa0693200 AT1G09460.1 43.689 103 53 4 402 503 127 225 6.68e-17 82.4
Msa0693200 AT1G79480.1 37.931 87 54 0 410 496 308 394 7.81e-17 83.2
Msa0693200 AT1G79480.2 37.931 87 54 0 410 496 307 393 7.89e-17 83.2
Msa0693200 AT5G67460.2 39.362 94 50 2 404 490 278 371 8.58e-16 79.7
Msa0693200 AT3G28250.1 40.506 79 46 1 412 490 2 79 2.61e-15 72.8
Msa0693200 AT5G35740.1 34.066 91 58 2 410 498 27 117 3.98e-15 72.4
Msa0693200 AT2G03505.4 36.667 90 55 1 410 497 18 107 5.17e-15 73.6
Msa0693200 AT2G03505.1 36.667 90 55 1 410 497 18 107 5.17e-15 73.6
Msa0693200 AT2G03505.2 36.667 90 55 1 410 497 18 107 5.17e-15 73.6
Msa0693200 AT2G03505.3 37.805 82 51 0 410 491 18 99 1.13e-14 70.9
Msa0693200 AT2G04910.1 35.366 82 52 1 412 492 14 95 4.79e-14 69.3
Msa0693200 AT1G26450.1 43.662 71 39 1 414 484 22 91 3.12e-13 68.9
Msa0693200 AT2G42930.1 37.975 79 48 1 413 491 40 117 6.98e-13 66.2
Msa0693200 AT1G69295.1 37.037 81 50 1 413 493 21 100 1.29e-12 67.8
Msa0693200 AT1G69295.2 37.037 81 50 1 413 493 17 96 2.01e-12 67.4
Msa0693200 AT1G13830.2 35.897 78 50 0 413 490 35 112 7.12e-12 65.5
Msa0693200 AT1G13830.1 35.443 79 51 0 413 491 21 99 8.89e-12 64.7

Find 179 sgRNAs with CRISPR-Local

Find 366 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACGATTCTGATTGTGATTT+TGG 0.055906 4_4:+62091223 Msa0693200:CDS
CTTATTAAGCATGTTAATTC+TGG 0.147932 4_4:+62090134 Msa0693200:CDS
GGTGACGTGGATTTGGTTAT+TGG 0.210206 4_4:+62090032 Msa0693200:CDS
GAAAATGCAGTTTCTTATAA+TGG 0.220914 4_4:+62090107 Msa0693200:CDS
AGAAACGGGTTGGCCTTCTT+TGG 0.250362 4_4:+62090055 Msa0693200:CDS
GGGAAGAATGTGTGCTATTA+AGG 0.258785 4_4:-62089649 None:intergenic
TTCACGGTGGAATTTGAGTA+TGG 0.267203 4_4:-62089820 None:intergenic
GCATCTGAGCCCACGGCAAT+GGG 0.277359 4_4:+62090986 Msa0693200:CDS
GATACGGTTGAAGATGGTTT+TGG 0.296130 4_4:-62089589 None:intergenic
TTCTCACTAGCATTCGTCTT+TGG 0.296614 4_4:-62091055 None:intergenic
CCATATGCAGCTACAAGTTC+AGG 0.303006 4_4:+62093376 Msa0693200:CDS
GTGGCGACGGTTGTGGGTGG+TGG 0.306966 4_4:-62089381 None:intergenic
AAAATGCAGTTTCTTATAAT+GGG 0.314501 4_4:+62090108 Msa0693200:CDS
GAGAGAATGCCGAGTGAGTT+AGG 0.319234 4_4:-62089735 None:intergenic
TGAAACTAAATCTCCTTTCA+TGG 0.327719 4_4:+62089839 Msa0693200:CDS
ACAGCAATGGGACCCGCATC+AGG 0.328618 4_4:+62090944 Msa0693200:CDS
CACGGCCCACCATTCTTTAT+AGG 0.339685 4_4:-62091130 None:intergenic
AGTGAGCCACCATCTGTATC+AGG 0.341406 4_4:-62093415 None:intergenic
TCAAATGGATGCGGTTTATT+CGG 0.344476 4_4:+62089989 Msa0693200:CDS
GAGGAAGGTGGCGACGGTTG+TGG 0.351074 4_4:-62089388 None:intergenic
AGGAAGGTGGCGACGGTTGT+GGG 0.352793 4_4:-62089387 None:intergenic
AATGTGGGTGATTGTGGTTT+GGG 0.355018 4_4:-62089415 None:intergenic
CAGGCAATGGGACCCGCATC+AGG 0.356382 4_4:+62090917 Msa0693200:intron
ACTATTTCGGAGCAGAATTA+CGG 0.359928 4_4:+62090233 Msa0693200:CDS
TAATGTGGGTGATTGTGGTT+TGG 0.360475 4_4:-62089416 None:intergenic
GAAGTGATATAATCTAAGTT+TGG 0.364134 4_4:-62093452 None:intergenic
TTGGCCTTCTTTGGGTGACC+CGG 0.364508 4_4:+62090064 Msa0693200:CDS
GAAACGGGTTGGCCTTCTTT+GGG 0.373731 4_4:+62090056 Msa0693200:CDS
GAATCTTAAACCTACTATTT+CGG 0.373792 4_4:+62090220 Msa0693200:CDS
TATGGTTAACGTATGCGATT+TGG 0.374278 4_4:+62093552 Msa0693200:three_prime_UTR
TGCTAGTGAGAAAGCGTTGC+AGG 0.375426 4_4:+62091066 Msa0693200:CDS
TTTCTGATAATATGCATTCA+TGG 0.378067 4_4:-62091191 None:intergenic
TATGTTCCTAGTTAAGATTA+TGG 0.378482 4_4:+62093534 Msa0693200:three_prime_UTR
ACGGCGGAAAGCGGCGGAGC+TGG 0.378862 4_4:-62089772 None:intergenic
GGGTCAACCCGGTGTGAGTT+TGG 0.380428 4_4:+62090085 Msa0693200:CDS
CTATTTCGGAGCAGAATTAC+GGG 0.380969 4_4:+62090234 Msa0693200:CDS
TTACACCGGTTTATGACGTT+GGG 0.381082 4_4:+62090273 Msa0693200:CDS
CGGCGGAAAGCGGCGGAGCT+GGG 0.381878 4_4:-62089771 None:intergenic
TTCTTTGAAGGAGACGATTC+CGG 0.384255 4_4:-62091022 None:intergenic
TGCATCTGAGCCCACGGCAA+TGG 0.387711 4_4:+62090985 Msa0693200:CDS
GGGTTATGGTGACGTGGATT+TGG 0.392613 4_4:+62090025 Msa0693200:CDS
TTGAGTGAGGGGTGAGATTG+AGG 0.399975 4_4:-62089230 None:intergenic
TTATTAAGCATGTTAATTCT+GGG 0.403241 4_4:+62090135 Msa0693200:CDS
AGAAGAAGAAGTAAGTGAAA+AGG 0.406677 4_4:-62089270 None:intergenic
CAACATGTTTGACGCTCAAA+TGG 0.408790 4_4:+62089974 Msa0693200:CDS
AATGCATATTATCAGAAATC+TGG 0.412484 4_4:+62091196 Msa0693200:CDS
GTTGGTGGTTATCCATTGTT+GGG 0.416350 4_4:-62089550 None:intergenic
GGCACGCACCATTTCTTTGA+AGG 0.417988 4_4:-62091034 None:intergenic
GAATTACGGGTTGTTTAAAC+CGG 0.424322 4_4:+62090247 Msa0693200:CDS
TGGTGGGAGGTTGTCGGCGA+TGG 0.425680 4_4:-62089364 None:intergenic
CCTGAACTTGTAGCTGCATA+TGG 0.426000 4_4:-62093376 None:intergenic
GTAGGTGGCGGAGGAGAAGT+TGG 0.426078 4_4:-62089319 None:intergenic
CGCATGGGACCTCAGTGAAT+CGG 0.426631 4_4:-62091161 None:intergenic
TGTTGGTGGTTATCCATTGT+TGG 0.429432 4_4:-62089551 None:intergenic
AATCGTCTCCTTCAAAGAAA+TGG 0.433918 4_4:+62091026 Msa0693200:CDS
ATTGCCGTGGGCTCAGATGC+AGG 0.439362 4_4:-62090983 None:intergenic
TAAGTCTCAAAGGTTCTATT+AGG 0.441760 4_4:-62090176 None:intergenic
TACGCTTTGTTTAAACCAAA+CGG 0.443987 4_4:+62089915 Msa0693200:CDS
CGCATCAATTTGACCTAGGA+AGG 0.445031 4_4:+62093602 Msa0693200:three_prime_UTR
GGTTATCCATTGTTGGGCGG+AGG 0.447089 4_4:-62089544 None:intergenic
TAATTCTGCTCCGAAATAGT+AGG 0.456073 4_4:-62090230 None:intergenic
ATTGCTGTTGGCCCTGATGC+GGG 0.456448 4_4:-62090929 None:intergenic
ATTGCTGTTGGCCCTGATGC+GGG 0.456448 4_4:-62090956 None:intergenic
GCATCAGGGCCAACAGCAAT+GGG 0.460085 4_4:+62090932 Msa0693200:CDS
TTTGAGTATGGGAGTGAAGA+TGG 0.460178 4_4:-62089808 None:intergenic
TGTGGGTGGTGGGAGGTTGT+CGG 0.463071 4_4:-62089370 None:intergenic
GGATTTGGTTATTGGAGAAA+CGG 0.465568 4_4:+62090040 Msa0693200:CDS
AAAATACAAATACCCTTCCT+AGG 0.466441 4_4:-62093615 None:intergenic
CGCATCAGGGCCAACAGCAA+TGG 0.466828 4_4:+62090958 Msa0693200:CDS
GCATGGGACCTCAGTGAATC+GGG 0.468310 4_4:-62091160 None:intergenic
GTTATCCATTGTTGGGCGGA+GGG 0.469391 4_4:-62089543 None:intergenic
TGGCCTTCTTTGGGTGACCC+GGG 0.470182 4_4:+62090065 Msa0693200:CDS
CGCATCAGGGCCAACAGCAA+TGG 0.474043 4_4:+62090931 Msa0693200:CDS
AGCTTGATGAAGTGCATTCA+TGG 0.474444 4_4:-62089673 None:intergenic
CTCTGATGGCCCCATTGCCG+TGG 0.477360 4_4:-62090996 None:intergenic
AGCGGCGGAGCTGGGTGGTG+AGG 0.479049 4_4:-62089763 None:intergenic
CGTTAACCATAATCTTAACT+AGG 0.481090 4_4:-62093540 None:intergenic
GCATCAGGGCCAACAGCAAT+GGG 0.481429 4_4:+62090959 Msa0693200:CDS
CATTCATGGCGTAGGCCGCA+TGG 0.487790 4_4:-62091177 None:intergenic
GATTTGGTTATTGGAGAAAC+GGG 0.488611 4_4:+62090041 Msa0693200:CDS
AAACTCACACCGGGTTGACC+CGG 0.489870 4_4:-62090083 None:intergenic
AAAACCCCAACGTCATAAAC+CGG 0.493575 4_4:-62090278 None:intergenic
GCGATGAAGAAAGTGGGTTA+TGG 0.499058 4_4:+62090011 Msa0693200:CDS
CGTAGTTAAGTGCGTCGGGT+TGG 0.507173 4_4:-62089896 None:intergenic
GGGATGGTAAGGGAGGATGT+TGG 0.509749 4_4:-62089568 None:intergenic
AAAGCGTAGTTAAGTGCGTC+GGG 0.510135 4_4:-62089900 None:intergenic
GCCGATGTTGTAGGTGGCGG+AGG 0.512504 4_4:-62089328 None:intergenic
TTTCGTTACCGACGGCGATA+CGG 0.515705 4_4:-62089605 None:intergenic
GTCGGCGTTGGAGACGGTTA+CGG 0.516344 4_4:-62089499 None:intergenic
TGGCGACGGTTGTGGGTGGT+GGG 0.516389 4_4:-62089380 None:intergenic
AAGCATGTTAATTCTGGGAA+AGG 0.516430 4_4:+62090140 Msa0693200:CDS
CTTACACCGGTTTATGACGT+TGG 0.517304 4_4:+62090272 Msa0693200:CDS
GTAGTTGACGCCGATGTTGT+AGG 0.518828 4_4:-62089337 None:intergenic
TGAGGAAGGAAAGAAGTAAG+TGG 0.520063 4_4:-62089212 None:intergenic
GTGAGGGGTGAGATTGAGGA+AGG 0.520861 4_4:-62089226 None:intergenic
GTTGGCGAAGGCGCGGAGGA+TGG 0.522927 4_4:-62089460 None:intergenic
TGCAGCCATGGGATAGATTG+TGG 0.523813 4_4:+62091106 Msa0693200:CDS
TGAAAGGAGATTTAGTTTCA+CGG 0.526342 4_4:-62089836 None:intergenic
CGACGGTTGTGGGTGGTGGG+AGG 0.527264 4_4:-62089377 None:intergenic
TGAGAAAATGTAAGTCTCAA+AGG 0.527355 4_4:-62090186 None:intergenic
AGGGATGTCGGCGTTGGAGA+CGG 0.529818 4_4:-62089505 None:intergenic
TCACGGTGGAATTTGAGTAT+GGG 0.531714 4_4:-62089819 None:intergenic
TACAACATCGGCGTCAACTA+CGG 0.534301 4_4:+62089339 Msa0693200:CDS
GATGCAGGACCCATTGCTGT+TGG 0.534921 4_4:-62090968 None:intergenic
CATATGCAGCTACAAGTTCA+GGG 0.535774 4_4:+62093377 Msa0693200:CDS
GATGCGGGTCCCATTGCTGT+TGG 0.536050 4_4:-62090941 None:intergenic
GACGGCGATACGGTTGAAGA+TGG 0.536299 4_4:-62089595 None:intergenic
TCTGATGGCCCCATTGCCGT+GGG 0.539096 4_4:-62090995 None:intergenic
TGGAAGTTGAGAGAAGGAGA+AGG 0.539402 4_4:-62089299 None:intergenic
ATTGACTATGTGTGCAGCCA+TGG 0.539482 4_4:+62091094 Msa0693200:CDS
GTAATGTAACCACAGGCAAT+GGG 0.541692 4_4:+62090905 Msa0693200:intron
ATTCATGGCGTAGGCCGCAT+GGG 0.541939 4_4:-62091176 None:intergenic
GCAGCCATGGGATAGATTGT+GGG 0.542242 4_4:+62091107 Msa0693200:CDS
ATGGTAAGGGAGGATGTTGG+TGG 0.545195 4_4:-62089565 None:intergenic
AACTCCCCTCCGCCCAACAA+TGG 0.547508 4_4:+62089538 Msa0693200:CDS
TCCTCCGCCACCTACAACAT+CGG 0.548536 4_4:+62089327 Msa0693200:CDS
TCATAAACCGGTGTAAGATC+CGG 0.549529 4_4:-62090266 None:intergenic
AATGGGGCCATCAGAGTCAC+CGG 0.551649 4_4:+62091003 Msa0693200:CDS
GATTGTGGGCCTATAAAGAA+TGG 0.554406 4_4:+62091121 Msa0693200:CDS
AACTCACACCGGGTTGACCC+GGG 0.554491 4_4:-62090082 None:intergenic
AAGGTTCTATTAGGCATCAA+AGG 0.556375 4_4:-62090167 None:intergenic
TGATGAAGTGCATTCATGGC+GGG 0.556738 4_4:-62089669 None:intergenic
AGAAGTTGGAAGTTGAGAGA+AGG 0.556925 4_4:-62089305 None:intergenic
TTATCCATTGTTGGGCGGAG+GGG 0.557483 4_4:-62089542 None:intergenic
CATTGCTGTTGGCCCTGATG+CGG 0.558259 4_4:-62090930 None:intergenic
GAGGGAAGGGATGTCGGCGT+TGG 0.558404 4_4:-62089511 None:intergenic
GGGTCCTGCATCTGAGCCCA+CGG 0.559775 4_4:+62090979 Msa0693200:CDS
TGGTTATTGGAGAAACGGGT+TGG 0.560351 4_4:+62090045 Msa0693200:CDS
ATATAATCTAAGTTTGGAAG+TGG 0.562769 4_4:-62093446 None:intergenic
TTGGGTGACCCGGGTCAACC+CGG 0.564347 4_4:+62090074 Msa0693200:CDS
CATTGCTGTTGGCCCTGATG+CGG 0.564830 4_4:-62090957 None:intergenic
CAGCAATGGGACCCGCATCA+GGG 0.567971 4_4:+62090945 Msa0693200:CDS
GTTTGACGCTCAAATGGATG+CGG 0.568510 4_4:+62089980 Msa0693200:CDS
AGCTCCGCCGCTTTCCGCCG+TGG 0.568513 4_4:+62089774 Msa0693200:CDS
GACGCCGATGTTGTAGGTGG+CGG 0.571038 4_4:-62089331 None:intergenic
TGACCCGGGTCACCCAAAGA+AGG 0.573068 4_4:-62090068 None:intergenic
CAAAGCGTAGTTAAGTGCGT+CGG 0.573159 4_4:-62089901 None:intergenic
ATAATATGCATTCATGGCGT+AGG 0.573503 4_4:-62091185 None:intergenic
GTAGCCACGGCGGAAAGCGG+CGG 0.576860 4_4:-62089778 None:intergenic
GGAGATGTTGGTGTTGGCGA+AGG 0.579098 4_4:-62089472 None:intergenic
CATTTGAGCGTCAAACATGT+TGG 0.579173 4_4:-62089973 None:intergenic
AGGCAATGGGACCCGCATCA+GGG 0.580179 4_4:+62090918 Msa0693200:intron
ATCTTCAACCGTATCGCCGT+CGG 0.580682 4_4:+62089597 Msa0693200:CDS
AAGGTGGCGACGGTTGTGGG+TGG 0.581254 4_4:-62089384 None:intergenic
TGCGAGGATTTCGTTACCGA+CGG 0.583665 4_4:-62089613 None:intergenic
GTCGTAGCCACGGCGGAAAG+CGG 0.584047 4_4:-62089781 None:intergenic
TGTTGGTGTTGGCGAAGGCG+CGG 0.584813 4_4:-62089467 None:intergenic
CGGAAAGCGGCGGAGCTGGG+TGG 0.590199 4_4:-62089768 None:intergenic
TTATTCGGCGATGAAGAAAG+TGG 0.592387 4_4:+62090004 Msa0693200:CDS
GACGATTCCGGTGACTCTGA+TGG 0.592672 4_4:-62091010 None:intergenic
GTTGGAGACGGTTACGGTGA+CGG 0.594352 4_4:-62089493 None:intergenic
CTCTCGCATCAATTTGACCT+AGG 0.597172 4_4:+62093598 Msa0693200:three_prime_UTR
TACACCGGTTTATGACGTTG+GGG 0.597317 4_4:+62090274 Msa0693200:CDS
GTTTAAACCGGATCTTACAC+CGG 0.598400 4_4:+62090259 Msa0693200:CDS
GGTTACGGTGACGGAGATGT+TGG 0.608393 4_4:-62089484 None:intergenic
GGATACGGGTTAACCATGAA+AGG 0.614772 4_4:-62089852 None:intergenic
TATTCGGCGATGAAGAAAGT+GGG 0.614835 4_4:+62090005 Msa0693200:CDS
ATCACATCTCCTAACTCACT+CGG 0.619348 4_4:+62089726 Msa0693200:CDS
AGATGGTAACGTCGTAGCCA+CGG 0.622998 4_4:-62089791 None:intergenic
TAGGCCCACAATCTATCCCA+TGG 0.624924 4_4:-62091111 None:intergenic
TGTGGGCCTATAAAGAATGG+TGG 0.629073 4_4:+62091124 Msa0693200:CDS
CAAAATCACAATCAGAATCG+TGG 0.635094 4_4:-62091222 None:intergenic
CTAGGTCAAATTGATGCGAG+AGG 0.636449 4_4:-62093597 None:intergenic
GTGGGCCTATAAAGAATGGT+GGG 0.638570 4_4:+62091125 Msa0693200:CDS
TTGACTATGTGTGCAGCCAT+GGG 0.639016 4_4:+62091095 Msa0693200:CDS
GGTGGTTATCCATTGTTGGG+CGG 0.649092 4_4:-62089547 None:intergenic
AGTGAATCGGGCTTATAACA+CGG 0.650467 4_4:-62091148 None:intergenic
GGTGACGGAGATGTTGGTGT+TGG 0.651352 4_4:-62089478 None:intergenic
CATCTGAGCCCACGGCAATG+GGG 0.656084 4_4:+62090987 Msa0693200:CDS
GTTGACGCCGATGTTGTAGG+TGG 0.658363 4_4:-62089334 None:intergenic
GCATCAATTTGACCTAGGAA+GGG 0.662138 4_4:+62093603 Msa0693200:three_prime_UTR
GAAAGTGGGTTATGGTGACG+TGG 0.664611 4_4:+62090019 Msa0693200:CDS
CGATTCACTGAGGTCCCATG+CGG 0.688080 4_4:+62091162 Msa0693200:CDS
TGGTGTTGGCGAAGGCGCGG+AGG 0.689311 4_4:-62089464 None:intergenic
GCTTTGTTTAAACCAAACGG+TGG 0.698649 4_4:+62089918 Msa0693200:CDS
TTGATGAAGTGCATTCATGG+CGG 0.706655 4_4:-62089670 None:intergenic
AAGGAGATTTAGTTTCACGG+TGG 0.707590 4_4:-62089833 None:intergenic
GTTATAAGCCCGATTCACTG+AGG 0.751026 4_4:+62091152 Msa0693200:CDS
TGGTAACGTCGTAGCCACGG+CGG 0.808289 4_4:-62089788 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATGATTAAATTAAATGTT+GGG + chr4_4:62091371-62091390 Msa0693200:intron 10.0%
!! CATATAATAAAAACATTTAA+GGG - chr4_4:62092553-62092572 None:intergenic 10.0%
!! ACATATAATAAAAACATTTA+AGG - chr4_4:62092554-62092573 None:intergenic 10.0%
!! TAAAATAAACAGATAAATGA+AGG - chr4_4:62090348-62090367 None:intergenic 15.0%
!!! ATTTATCTGTTTATTTTAGT+GGG + chr4_4:62090350-62090369 Msa0693200:intron 15.0%
!!! TTAATCATATGTTTTTTTAC+AGG - chr4_4:62091361-62091380 None:intergenic 15.0%
!! CATATGATTAAATTAAATGT+TGG + chr4_4:62091370-62091389 Msa0693200:intron 15.0%
!!! ATTTAAAGTGCATAATTTAA+TGG + chr4_4:62092269-62092288 Msa0693200:intron 15.0%
!!! ATTTTGAAACAATTTAGATT+AGG + chr4_4:62093050-62093069 Msa0693200:intron 15.0%
!! AGGTATAATAAAATAAAAAC+AGG - chr4_4:62093161-62093180 None:intergenic 15.0%
!! AAAAAAACTTATGAGAATAT+GGG + chr4_4:62093321-62093340 Msa0693200:intron 15.0%
!! AAAATGCAGTTTCTTATAAT+GGG + chr4_4:62090108-62090127 Msa0693200:CDS 20.0%
!! TTATTAAGCATGTTAATTCT+GGG + chr4_4:62090135-62090154 Msa0693200:CDS 20.0%
!! AAAGAAAAAATGTATAGGTA+CGG - chr4_4:62090325-62090344 None:intergenic 20.0%
!!! CATTTATCTGTTTATTTTAG+TGG + chr4_4:62090349-62090368 Msa0693200:intron 20.0%
!!! TAAGGTTATGTTTATTGTTT+TGG - chr4_4:62090783-62090802 None:intergenic 20.0%
!! ATTAAAATACAGTTAGAGTA+AGG - chr4_4:62090801-62090820 None:intergenic 20.0%
!!! TTACATGAGTTTAATTTTGA+TGG + chr4_4:62091302-62091321 Msa0693200:intron 20.0%
!!! TTTTACAGGATTTAATCATA+TGG - chr4_4:62091347-62091366 None:intergenic 20.0%
!!! AATATGTATGAAATTTTCTG+TGG + chr4_4:62091594-62091613 Msa0693200:intron 20.0%
!! ATAATCAAATGTGTTATGAA+TGG + chr4_4:62091623-62091642 Msa0693200:intron 20.0%
!! CAAGATTAAATTTATGTTGT+AGG + chr4_4:62092088-62092107 Msa0693200:intron 20.0%
!! CAAGTGACATAAAATTATAA+AGG - chr4_4:62092646-62092665 None:intergenic 20.0%
!! TTCAAAATAACAACAAATCT+AGG - chr4_4:62093038-62093057 None:intergenic 20.0%
!! GAAAAAAACTTATGAGAATA+TGG + chr4_4:62093320-62093339 Msa0693200:intron 20.0%
! TTTGATGAAATACCGAAAAA+CGG - chr4_4:62089876-62089895 None:intergenic 25.0%
! GAAAATGCAGTTTCTTATAA+TGG + chr4_4:62090107-62090126 Msa0693200:CDS 25.0%
! CTTATTAAGCATGTTAATTC+TGG + chr4_4:62090134-62090153 Msa0693200:CDS 25.0%
! GAATCTTAAACCTACTATTT+CGG + chr4_4:62090220-62090239 Msa0693200:CDS 25.0%
! GAAGGAAAGAAAAAATGTAT+AGG - chr4_4:62090330-62090349 None:intergenic 25.0%
!!! GCTTTTGGTTAAAATTTGAA+AGG + chr4_4:62090592-62090611 Msa0693200:intron 25.0%
! TTTCTGATAATATGCATTCA+TGG - chr4_4:62091194-62091213 None:intergenic 25.0%
! AATGCATATTATCAGAAATC+TGG + chr4_4:62091196-62091215 Msa0693200:CDS 25.0%
! CAAATCAGTAAAACTTACTA+GGG - chr4_4:62091276-62091295 None:intergenic 25.0%
! ACAAATCAGTAAAACTTACT+AGG - chr4_4:62091277-62091296 None:intergenic 25.0%
!! TTGTATTTTATCATGAGTCA+AGG - chr4_4:62091445-62091464 None:intergenic 25.0%
! TTTACTTGTCTCATGATATT+TGG + chr4_4:62091503-62091522 Msa0693200:intron 25.0%
! AAGTTAGACAATCATTATCA+TGG - chr4_4:62091793-62091812 None:intergenic 25.0%
! AAGTTAGACAATCATTATCA+TGG - chr4_4:62091793-62091812 None:intergenic 25.0%
! AAATTTAATCTTGCAACAAC+AGG - chr4_4:62092081-62092100 None:intergenic 25.0%
! CATCATTAATTCTTAGACTA+TGG - chr4_4:62092175-62092194 None:intergenic 25.0%
! AGAGAATCATATGAGATTTA+GGG + chr4_4:62092326-62092345 Msa0693200:intron 25.0%
! AAAGTAACCCAAACAAAAAT+GGG - chr4_4:62092371-62092390 None:intergenic 25.0%
!! TTTGTATTTTATACTGAGTC+AGG + chr4_4:62092479-62092498 Msa0693200:intron 25.0%
!! TTGTATTTTATACTGAGTCA+GGG + chr4_4:62092480-62092499 Msa0693200:intron 25.0%
! TCATATAAAAGTGACTTGAA+CGG - chr4_4:62092722-62092741 None:intergenic 25.0%
!!! AATTGATTTTAGTTGAAGCT+AGG + chr4_4:62092855-62092874 Msa0693200:intron 25.0%
! TATGTTTCATACATTTGCAT+GGG - chr4_4:62093222-62093241 None:intergenic 25.0%
! TTATGTTTCATACATTTGCA+TGG - chr4_4:62093223-62093242 None:intergenic 25.0%
! ATATAATCTAAGTTTGGAAG+TGG - chr4_4:62093449-62093468 None:intergenic 25.0%
! GAAGTGATATAATCTAAGTT+TGG - chr4_4:62093455-62093474 None:intergenic 25.0%
! TATGTTCCTAGTTAAGATTA+TGG + chr4_4:62093534-62093553 Msa0693200:three_prime_UTR 25.0%
!! TTGGAAGTAGATTTTCTTTT+TGG + chr4_4:62093571-62093590 Msa0693200:three_prime_UTR 25.0%
!! TGGAAGTAGATTTTCTTTTT+GGG + chr4_4:62093572-62093591 Msa0693200:three_prime_UTR 25.0%
! ATAATCATGACTGAAAAATG+TGG + chr4_4:62093684-62093703 Msa0693200:three_prime_UTR 25.0%
!!! CATTTTGATTTTTGAGTGAG+GGG - chr4_4:62089244-62089263 None:intergenic 30.0%
!!! CCATTTTGATTTTTGAGTGA+GGG - chr4_4:62089245-62089264 None:intergenic 30.0%
AGAAGAAGAAGTAAGTGAAA+AGG - chr4_4:62089273-62089292 None:intergenic 30.0%
!! TGTGTCGAAGATTTTAATGT+GGG - chr4_4:62089433-62089452 None:intergenic 30.0%
!! TTGTGTCGAAGATTTTAATG+TGG - chr4_4:62089434-62089453 None:intergenic 30.0%
! TGAAAGGAGATTTAGTTTCA+CGG - chr4_4:62089839-62089858 None:intergenic 30.0%
TGAAACTAAATCTCCTTTCA+TGG + chr4_4:62089839-62089858 Msa0693200:CDS 30.0%
!! TACGCTTTGTTTAAACCAAA+CGG + chr4_4:62089915-62089934 Msa0693200:CDS 30.0%
TAAGTCTCAAAGGTTCTATT+AGG - chr4_4:62090179-62090198 None:intergenic 30.0%
TGAGAAAATGTAAGTCTCAA+AGG - chr4_4:62090189-62090208 None:intergenic 30.0%
TTTAACCCAAAAACATCAAC+AGG + chr4_4:62090298-62090317 Msa0693200:CDS 30.0%
! TGTACTAATTTGTCACGTAA+AGG - chr4_4:62090448-62090467 None:intergenic 30.0%
AAATTCCAGACAAAACATAG+GGG - chr4_4:62090501-62090520 None:intergenic 30.0%
CAAATTCCAGACAAAACATA+GGG - chr4_4:62090502-62090521 None:intergenic 30.0%
!! TTTGTCTGGAATTTGCATTT+TGG + chr4_4:62090507-62090526 Msa0693200:intron 30.0%
!! TTGTCTGGAATTTGCATTTT+GGG + chr4_4:62090508-62090527 Msa0693200:intron 30.0%
TGTAATTGTAATGTAACCAC+AGG + chr4_4:62090898-62090917 Msa0693200:intron 30.0%
GGATTTAATCATATGGTTGA+TGG - chr4_4:62091340-62091359 None:intergenic 30.0%
AAGTAAACACAATATGCTGA+CGG - chr4_4:62091490-62091509 None:intergenic 30.0%
TTTGGCTGTATAAAGAACTA+TGG - chr4_4:62091535-62091554 None:intergenic 30.0%
GTTCAGACAACTAACATATT+TGG - chr4_4:62091553-62091572 None:intergenic 30.0%
AAAAATTTACTTCCTGTGTC+AGG - chr4_4:62091757-62091776 None:intergenic 30.0%
AAAAATTTACTTCCTGTGTC+AGG - chr4_4:62091757-62091776 None:intergenic 30.0%
ACTATGACATCACAAAAATG+AGG - chr4_4:62092130-62092149 None:intergenic 30.0%
TAGTTCAATTTCAAGCCAAA+TGG + chr4_4:62092220-62092239 Msa0693200:intron 30.0%
GAGAGAATCATATGAGATTT+AGG + chr4_4:62092325-62092344 Msa0693200:intron 30.0%
!! ATTTTGTCCCCATTTTTGTT+TGG + chr4_4:62092360-62092379 Msa0693200:intron 30.0%
!! TTTTGTCCCCATTTTTGTTT+GGG + chr4_4:62092361-62092380 Msa0693200:intron 30.0%
AAGTAACCCAAACAAAAATG+GGG - chr4_4:62092370-62092389 None:intergenic 30.0%
GAAAGTAACCCAAACAAAAA+TGG - chr4_4:62092372-62092391 None:intergenic 30.0%
!! TGTTTGGGTTACTTTCATTT+TGG + chr4_4:62092376-62092395 Msa0693200:intron 30.0%
TACAAATACAAAATAGTCCC+TGG - chr4_4:62092465-62092484 None:intergenic 30.0%
AATCATTTCACGTGTATGTT+TGG + chr4_4:62092773-62092792 Msa0693200:intron 30.0%
TCAACTAAAATCAATTCTGG+AGG - chr4_4:62092851-62092870 None:intergenic 30.0%
GCTTCAACTAAAATCAATTC+TGG - chr4_4:62092854-62092873 None:intergenic 30.0%
AAAATAAAAACAGGTCCTAC+CGG - chr4_4:62093152-62093171 None:intergenic 30.0%
TTGGTGAATCAAAAAATTGC+AGG - chr4_4:62093181-62093200 None:intergenic 30.0%
TTGATTCACCAAGAAAATGA+AGG + chr4_4:62093189-62093208 Msa0693200:intron 30.0%
!! ACAACTATTGTATTGATTGC+TGG + chr4_4:62093294-62093313 Msa0693200:intron 30.0%
!! CAACTATTGTATTGATTGCT+GGG + chr4_4:62093295-62093314 Msa0693200:intron 30.0%
CGTTAACCATAATCTTAACT+AGG - chr4_4:62093543-62093562 None:intergenic 30.0%
AAAATACAAATACCCTTCCT+AGG - chr4_4:62093618-62093637 None:intergenic 30.0%
CCCTCACTCAAAAATCAAAA+TGG + chr4_4:62089242-62089261 Msa0693200:CDS 35.0%
!!! GCCATTTTGATTTTTGAGTG+AGG - chr4_4:62089246-62089265 None:intergenic 35.0%
!! GATTTTAATGTGGGTGATTG+TGG - chr4_4:62089424-62089443 None:intergenic 35.0%
! ATACGGTTGAAGATGGTTTT+GGG - chr4_4:62089591-62089610 None:intergenic 35.0%
AAATACCGAAAAACGGATAC+GGG - chr4_4:62089869-62089888 None:intergenic 35.0%
GAAATACCGAAAAACGGATA+CGG - chr4_4:62089870-62089889 None:intergenic 35.0%
TCAAATGGATGCGGTTTATT+CGG + chr4_4:62089989-62090008 Msa0693200:CDS 35.0%
! GGATTTGGTTATTGGAGAAA+CGG + chr4_4:62090040-62090059 Msa0693200:CDS 35.0%
! GATTTGGTTATTGGAGAAAC+GGG + chr4_4:62090041-62090060 Msa0693200:CDS 35.0%
! AAGCATGTTAATTCTGGGAA+AGG + chr4_4:62090140-62090159 Msa0693200:CDS 35.0%
AAGGTTCTATTAGGCATCAA+AGG - chr4_4:62090170-62090189 None:intergenic 35.0%
TAATTCTGCTCCGAAATAGT+AGG - chr4_4:62090233-62090252 None:intergenic 35.0%
ACTATTTCGGAGCAGAATTA+CGG + chr4_4:62090233-62090252 Msa0693200:CDS 35.0%
! GAATTACGGGTTGTTTAAAC+CGG + chr4_4:62090247-62090266 Msa0693200:CDS 35.0%
GCAAATTCCAGACAAAACAT+AGG - chr4_4:62090503-62090522 None:intergenic 35.0%
!! TGTCTGGAATTTGCATTTTG+GGG + chr4_4:62090509-62090528 Msa0693200:intron 35.0%
TTTAACCAAAAGCTAGCAAG+TGG - chr4_4:62090585-62090604 None:intergenic 35.0%
!! TTGAAAGGCATTTGACTTGA+AGG + chr4_4:62090607-62090626 Msa0693200:intron 35.0%
AAGTGACAGGTTAATGCTTT+GGG - chr4_4:62090646-62090665 None:intergenic 35.0%
AAAGTGACAGGTTAATGCTT+TGG - chr4_4:62090647-62090666 None:intergenic 35.0%
TGAAGGAATAAGAAAGTGAC+AGG - chr4_4:62090659-62090678 None:intergenic 35.0%
TGGTACGTATTCATGAATGA+AGG - chr4_4:62090676-62090695 None:intergenic 35.0%
TCATTCATGAATACGTACCA+AGG + chr4_4:62090676-62090695 Msa0693200:intron 35.0%
TTGCACACGGTATTATTGTT+AGG + chr4_4:62090699-62090718 Msa0693200:intron 35.0%
ACACGGTATTATTGTTAGGT+CGG + chr4_4:62090703-62090722 Msa0693200:intron 35.0%
! TAGGTCGGTATTCATTTTAC+AGG + chr4_4:62090718-62090737 Msa0693200:intron 35.0%
AGTGTGAACTGTGTAAAGTT+TGG + chr4_4:62090867-62090886 Msa0693200:intron 35.0%
AATCGTCTCCTTCAAAGAAA+TGG + chr4_4:62091026-62091045 Msa0693200:CDS 35.0%
ATAATATGCATTCATGGCGT+AGG - chr4_4:62091188-62091207 None:intergenic 35.0%
CAAAATCACAATCAGAATCG+TGG - chr4_4:62091225-62091244 None:intergenic 35.0%
! CACGATTCTGATTGTGATTT+TGG + chr4_4:62091223-62091242 Msa0693200:CDS 35.0%
!! TGATTTGCTCTGATAATCAC+AGG + chr4_4:62091646-62091665 Msa0693200:intron 35.0%
TAACATGTGCAGAAGCTAAT+AGG - chr4_4:62091684-62091703 None:intergenic 35.0%
GTTGAACTATCAGTCAGAAT+TGG + chr4_4:62091946-62091965 Msa0693200:intron 35.0%
! TTTTGTGATGTCATAGTCCA+AGG + chr4_4:62092133-62092152 Msa0693200:intron 35.0%
CAATTTCAAGCCAAATGGAA+AGG + chr4_4:62092225-62092244 Msa0693200:intron 35.0%
! AGATGAGGTGACAATTGTTT+TGG - chr4_4:62092433-62092452 None:intergenic 35.0%
TTAAGGGTAAACAGTCACTT+TGG - chr4_4:62092537-62092556 None:intergenic 35.0%
!! AATTTTGGTCTCTCTAGAAG+TGG - chr4_4:62092801-62092820 None:intergenic 35.0%
! TACACCTCGAGAATCAATTT+TGG - chr4_4:62092816-62092835 None:intergenic 35.0%
!! ATTAGGAGCATCACAACAAA+AGG + chr4_4:62093067-62093086 Msa0693200:intron 35.0%
!! TTAGGAGCATCACAACAAAA+GGG + chr4_4:62093068-62093087 Msa0693200:intron 35.0%
ATCACAACAAAAGGGTTCTA+TGG + chr4_4:62093076-62093095 Msa0693200:intron 35.0%
AAATAAAAACAGGTCCTACC+GGG - chr4_4:62093151-62093170 None:intergenic 35.0%
ATTCACCAAGAAAATGAAGG+AGG + chr4_4:62093192-62093211 Msa0693200:intron 35.0%
! GTATCAGGCTTTTTGACATT+TGG - chr4_4:62093403-62093422 None:intergenic 35.0%
TATGGTTAACGTATGCGATT+TGG + chr4_4:62093552-62093571 Msa0693200:three_prime_UTR 35.0%
TGAGGAAGGAAAGAAGTAAG+TGG - chr4_4:62089215-62089234 None:intergenic 40.0%
AGAAGTTGGAAGTTGAGAGA+AGG - chr4_4:62089308-62089327 None:intergenic 40.0%
!! TGATTGTGGTTTGGGTTTTG+AGG - chr4_4:62089410-62089429 None:intergenic 40.0%
AATGTGGGTGATTGTGGTTT+GGG - chr4_4:62089418-62089437 None:intergenic 40.0%
TAATGTGGGTGATTGTGGTT+TGG - chr4_4:62089419-62089438 None:intergenic 40.0%
!! GTTGGTGGTTATCCATTGTT+GGG - chr4_4:62089553-62089572 None:intergenic 40.0%
!! TGTTGGTGGTTATCCATTGT+TGG - chr4_4:62089554-62089573 None:intergenic 40.0%
!!! AGATGGTTTTGGGATGGTAA+GGG - chr4_4:62089581-62089600 None:intergenic 40.0%
!!! AAGATGGTTTTGGGATGGTA+AGG - chr4_4:62089582-62089601 None:intergenic 40.0%
! GATACGGTTGAAGATGGTTT+TGG - chr4_4:62089592-62089611 None:intergenic 40.0%
! GGGAAGAATGTGTGCTATTA+AGG - chr4_4:62089652-62089671 None:intergenic 40.0%
TTGATGAAGTGCATTCATGG+CGG - chr4_4:62089673-62089692 None:intergenic 40.0%
AGCTTGATGAAGTGCATTCA+TGG - chr4_4:62089676-62089695 None:intergenic 40.0%
ATCACATCTCCTAACTCACT+CGG + chr4_4:62089726-62089745 Msa0693200:CDS 40.0%
TTTGAGTATGGGAGTGAAGA+TGG - chr4_4:62089811-62089830 None:intergenic 40.0%
TCACGGTGGAATTTGAGTAT+GGG - chr4_4:62089822-62089841 None:intergenic 40.0%
TTCACGGTGGAATTTGAGTA+TGG - chr4_4:62089823-62089842 None:intergenic 40.0%
! AAGGAGATTTAGTTTCACGG+TGG - chr4_4:62089836-62089855 None:intergenic 40.0%
!! GTTAACCCGTATCCGTTTTT+CGG + chr4_4:62089861-62089880 Msa0693200:CDS 40.0%
!! GCTTTGTTTAAACCAAACGG+TGG + chr4_4:62089918-62089937 Msa0693200:CDS 40.0%
TTATCAAAAACGCCACCGTT+TGG - chr4_4:62089933-62089952 None:intergenic 40.0%
! GGCGTTTTTGATAAAGCTAC+TGG + chr4_4:62089939-62089958 Msa0693200:CDS 40.0%
CATTTGAGCGTCAAACATGT+TGG - chr4_4:62089976-62089995 None:intergenic 40.0%
CAACATGTTTGACGCTCAAA+TGG + chr4_4:62089974-62089993 Msa0693200:CDS 40.0%
TTATTCGGCGATGAAGAAAG+TGG + chr4_4:62090004-62090023 Msa0693200:CDS 40.0%
TATTCGGCGATGAAGAAAGT+GGG + chr4_4:62090005-62090024 Msa0693200:CDS 40.0%
! TGCATTTTCCAAACTCACAC+CGG - chr4_4:62090096-62090115 None:intergenic 40.0%
CTATTTCGGAGCAGAATTAC+GGG + chr4_4:62090234-62090253 Msa0693200:CDS 40.0%
GTTTAAACCGGATCTTACAC+CGG + chr4_4:62090259-62090278 Msa0693200:CDS 40.0%
TCATAAACCGGTGTAAGATC+CGG - chr4_4:62090269-62090288 None:intergenic 40.0%
!! TTACACCGGTTTATGACGTT+GGG + chr4_4:62090273-62090292 Msa0693200:CDS 40.0%
AAAACCCCAACGTCATAAAC+CGG - chr4_4:62090281-62090300 None:intergenic 40.0%
! ACGGACCTGTTGATGTTTTT+GGG - chr4_4:62090306-62090325 None:intergenic 40.0%
! TACGGACCTGTTGATGTTTT+TGG - chr4_4:62090307-62090326 None:intergenic 40.0%
!! GTCTGGAATTTGCATTTTGG+GGG + chr4_4:62090510-62090529 Msa0693200:intron 40.0%
!! TTGCATTTTGGGGGTTATTG+TGG + chr4_4:62090519-62090538 Msa0693200:intron 40.0%
AATAATACCGTGTGCAACCT+TGG - chr4_4:62090696-62090715 None:intergenic 40.0%
TGTAATGTAACCACAGGCAA+TGG + chr4_4:62090904-62090923 Msa0693200:intron 40.0%
GTAATGTAACCACAGGCAAT+GGG + chr4_4:62090905-62090924 Msa0693200:intron 40.0%
! TTCTTTGAAGGAGACGATTC+CGG - chr4_4:62091025-62091044 None:intergenic 40.0%
TTCTCACTAGCATTCGTCTT+TGG - chr4_4:62091058-62091077 None:intergenic 40.0%
GATTGTGGGCCTATAAAGAA+TGG + chr4_4:62091121-62091140 Msa0693200:CDS 40.0%
AGTGAATCGGGCTTATAACA+CGG - chr4_4:62091151-62091170 None:intergenic 40.0%
! GATTGTGATTTTGGACACAC+TGG + chr4_4:62091232-62091251 Msa0693200:CDS 40.0%
CTGACGGAGATACACATTTA+GGG - chr4_4:62091474-62091493 None:intergenic 40.0%
TGTCAGGTGTGTAATCATAC+AGG - chr4_4:62091741-62091760 None:intergenic 40.0%
TATGATTACACACCTGACAC+AGG + chr4_4:62091742-62091761 Msa0693200:intron 40.0%
TGTCAGGTGTGTAATCATAC+AGG - chr4_4:62091741-62091760 None:intergenic 40.0%
TATGATTACACACCTGACAC+AGG + chr4_4:62091742-62091761 Msa0693200:intron 40.0%
GCATTTCTGTTATTGCACCT+TGG - chr4_4:62092153-62092172 None:intergenic 40.0%
AGGATGAATGATGTGGCATA+GGG - chr4_4:62092403-62092422 None:intergenic 40.0%
AAGGATGAATGATGTGGCAT+AGG - chr4_4:62092404-62092423 None:intergenic 40.0%
!!! ACAATTGTTTTGGACTGGCA+AGG - chr4_4:62092423-62092442 None:intergenic 40.0%
!!! AGGTGACAATTGTTTTGGAC+TGG - chr4_4:62092428-62092447 None:intergenic 40.0%
! GAGACCAAAATTGATTCTCG+AGG + chr4_4:62092809-62092828 Msa0693200:intron 40.0%
AAAAGGGTTCTATGGTGTAG+TGG + chr4_4:62093084-62093103 Msa0693200:intron 40.0%
CATATGCAGCTACAAGTTCA+GGG + chr4_4:62093377-62093396 Msa0693200:CDS 40.0%
GTCAAAAAGCCTGATACAGA+TGG + chr4_4:62093406-62093425 Msa0693200:CDS 40.0%
AAAAAGCCTGATACAGATGG+TGG + chr4_4:62093409-62093428 Msa0693200:CDS 40.0%
GCATCAATTTGACCTAGGAA+GGG + chr4_4:62093603-62093622 Msa0693200:three_prime_UTR 40.0%
TGGAAGTTGAGAGAAGGAGA+AGG - chr4_4:62089302-62089321 None:intergenic 45.0%
TACAACATCGGCGTCAACTA+CGG + chr4_4:62089339-62089358 Msa0693200:CDS 45.0%
!!! TGTGGTTTGGGTTTTGAGGA+AGG - chr4_4:62089406-62089425 None:intergenic 45.0%
! TTTTGTGAGGGAAGGGATGT+CGG - chr4_4:62089520-62089539 None:intergenic 45.0%
!!! GGTTGAAGATGGTTTTGGGA+TGG - chr4_4:62089587-62089606 None:intergenic 45.0%
!! AGGTTTTGTCTGAAGTTGCG+AGG - chr4_4:62089632-62089651 None:intergenic 45.0%
TGATGAAGTGCATTCATGGC+GGG - chr4_4:62089672-62089691 None:intergenic 45.0%
! GGATACGGGTTAACCATGAA+AGG - chr4_4:62089855-62089874 None:intergenic 45.0%
AAAGCGTAGTTAAGTGCGTC+GGG - chr4_4:62089903-62089922 None:intergenic 45.0%
CAAAGCGTAGTTAAGTGCGT+CGG - chr4_4:62089904-62089923 None:intergenic 45.0%
GTTTGACGCTCAAATGGATG+CGG + chr4_4:62089980-62089999 Msa0693200:CDS 45.0%
!! GCGATGAAGAAAGTGGGTTA+TGG + chr4_4:62090011-62090030 Msa0693200:CDS 45.0%
! GGTGACGTGGATTTGGTTAT+TGG + chr4_4:62090032-62090051 Msa0693200:CDS 45.0%
TGGTTATTGGAGAAACGGGT+TGG + chr4_4:62090045-62090064 Msa0693200:CDS 45.0%
! GCATTTTCCAAACTCACACC+GGG - chr4_4:62090095-62090114 None:intergenic 45.0%
!! CTTACACCGGTTTATGACGT+TGG + chr4_4:62090272-62090291 Msa0693200:CDS 45.0%
!! TACACCGGTTTATGACGTTG+GGG + chr4_4:62090274-62090293 Msa0693200:CDS 45.0%
TCGAACGAAACGGTCACAAA+AGG - chr4_4:62090398-62090417 None:intergenic 45.0%
CGCATATGCATCGAACGAAA+CGG - chr4_4:62090408-62090427 None:intergenic 45.0%
! CTATGCCCCTATGTTTTGTC+TGG + chr4_4:62090493-62090512 Msa0693200:intron 45.0%
ACAGGACACAGTCATTCACA+TGG - chr4_4:62090553-62090572 None:intergenic 45.0%
ATACGTACCAAGGTTGCACA+CGG + chr4_4:62090686-62090705 Msa0693200:intron 45.0%
ATTGACTATGTGTGCAGCCA+TGG + chr4_4:62091094-62091113 Msa0693200:CDS 45.0%
TTGACTATGTGTGCAGCCAT+GGG + chr4_4:62091095-62091114 Msa0693200:CDS 45.0%
TGTGGGCCTATAAAGAATGG+TGG + chr4_4:62091124-62091143 Msa0693200:CDS 45.0%
GTGGGCCTATAAAGAATGGT+GGG + chr4_4:62091125-62091144 Msa0693200:CDS 45.0%
GTTATAAGCCCGATTCACTG+AGG + chr4_4:62091152-62091171 Msa0693200:CDS 45.0%
GCTGACGGAGATACACATTT+AGG - chr4_4:62091475-62091494 None:intergenic 45.0%
AGCCAAATGGAAAGGTTGAC+AGG + chr4_4:62092233-62092252 Msa0693200:intron 45.0%
GCCAAATGGAAAGGTTGACA+GGG + chr4_4:62092234-62092253 Msa0693200:intron 45.0%
ACCCTGTCAACCTTTCCATT+TGG - chr4_4:62092238-62092257 None:intergenic 45.0%
ACTGGCAAGGATGAATGATG+TGG - chr4_4:62092410-62092429 None:intergenic 45.0%
ACCTCATCTGTTTCACATCC+AGG + chr4_4:62092444-62092463 Msa0693200:intron 45.0%
CCTCATCTGTTTCACATCCA+GGG + chr4_4:62092445-62092464 Msa0693200:intron 45.0%
! GTGTGCCTCCTTCATTTTCT+TGG - chr4_4:62093200-62093219 None:intergenic 45.0%
CCTGAACTTGTAGCTGCATA+TGG - chr4_4:62093379-62093398 None:intergenic 45.0%
CCATATGCAGCTACAAGTTC+AGG + chr4_4:62093376-62093395 Msa0693200:CDS 45.0%
CTAGGTCAAATTGATGCGAG+AGG - chr4_4:62093600-62093619 None:intergenic 45.0%
CTCTCGCATCAATTTGACCT+AGG + chr4_4:62093598-62093617 Msa0693200:three_prime_UTR 45.0%
CGCATCAATTTGACCTAGGA+AGG + chr4_4:62093602-62093621 Msa0693200:three_prime_UTR 45.0%
TTGAGTGAGGGGTGAGATTG+AGG - chr4_4:62089233-62089252 None:intergenic 50.0%
GTAGTTGACGCCGATGTTGT+AGG - chr4_4:62089340-62089359 None:intergenic 50.0%
!!! GGTTTGGGTTTTGAGGAAGG+TGG - chr4_4:62089403-62089422 None:intergenic 50.0%
!! AGGGGAGTTTTGTGAGGGAA+GGG - chr4_4:62089527-62089546 None:intergenic 50.0%
TTATCCATTGTTGGGCGGAG+GGG - chr4_4:62089545-62089564 None:intergenic 50.0%
GTTATCCATTGTTGGGCGGA+GGG - chr4_4:62089546-62089565 None:intergenic 50.0%
GGTGGTTATCCATTGTTGGG+CGG - chr4_4:62089550-62089569 None:intergenic 50.0%
ATGGTAAGGGAGGATGTTGG+TGG - chr4_4:62089568-62089587 None:intergenic 50.0%
!!! TGGTTTTGGGATGGTAAGGG+AGG - chr4_4:62089578-62089597 None:intergenic 50.0%
ATCTTCAACCGTATCGCCGT+CGG + chr4_4:62089597-62089616 Msa0693200:CDS 50.0%
TTTCGTTACCGACGGCGATA+CGG - chr4_4:62089608-62089627 None:intergenic 50.0%
TGCGAGGATTTCGTTACCGA+CGG - chr4_4:62089616-62089635 None:intergenic 50.0%
GAGAGAATGCCGAGTGAGTT+AGG - chr4_4:62089738-62089757 None:intergenic 50.0%
! AGATGGTAACGTCGTAGCCA+CGG - chr4_4:62089794-62089813 None:intergenic 50.0%
!! GAAAGTGGGTTATGGTGACG+TGG + chr4_4:62090019-62090038 Msa0693200:CDS 50.0%
! GGGTTATGGTGACGTGGATT+TGG + chr4_4:62090025-62090044 Msa0693200:CDS 50.0%
!! AGAAACGGGTTGGCCTTCTT+TGG + chr4_4:62090055-62090074 Msa0693200:CDS 50.0%
!! GAAACGGGTTGGCCTTCTTT+GGG + chr4_4:62090056-62090075 Msa0693200:CDS 50.0%
CCAAAAGCTAGCAAGTGGCA+AGG - chr4_4:62090580-62090599 None:intergenic 50.0%
!!! CCTTGCCACTTGCTAGCTTT+TGG + chr4_4:62090577-62090596 Msa0693200:intron 50.0%
GGCACGCACCATTTCTTTGA+AGG - chr4_4:62091037-62091056 None:intergenic 50.0%
!! TGCTAGTGAGAAAGCGTTGC+AGG + chr4_4:62091066-62091085 Msa0693200:CDS 50.0%
TGCAGCCATGGGATAGATTG+TGG + chr4_4:62091106-62091125 Msa0693200:CDS 50.0%
GCAGCCATGGGATAGATTGT+GGG + chr4_4:62091107-62091126 Msa0693200:CDS 50.0%
TAGGCCCACAATCTATCCCA+TGG - chr4_4:62091114-62091133 None:intergenic 50.0%
CACGGCCCACCATTCTTTAT+AGG - chr4_4:62091133-62091152 None:intergenic 50.0%
TGAGTCAAGGACCACTGTGA+CGG - chr4_4:62091432-62091451 None:intergenic 50.0%
CCCTGGATGTGAAACAGATG+AGG - chr4_4:62092448-62092467 None:intergenic 50.0%
CATACACCTCGCTGTCACAA+TGG - chr4_4:62092507-62092526 None:intergenic 50.0%
TGACAGCGAGGTGTATGTCA+AGG + chr4_4:62092510-62092529 Msa0693200:intron 50.0%
TGGTGTAGTGGTTAGCACTC+TGG + chr4_4:62093096-62093115 Msa0693200:intron 50.0%
GACTTTGAATCCAGCGACCT+GGG + chr4_4:62093118-62093137 Msa0693200:intron 50.0%
AGAATATGGGTGCCTGTTGC+AGG + chr4_4:62093334-62093353 Msa0693200:intron 50.0%
CATGTCTCAGAACCTGCAAC+AGG - chr4_4:62093349-62093368 None:intergenic 50.0%
AGTGAGCCACCATCTGTATC+AGG - chr4_4:62093418-62093437 None:intergenic 50.0%
GTGAGGGGTGAGATTGAGGA+AGG - chr4_4:62089229-62089248 None:intergenic 55.0%
TCCTCCGCCACCTACAACAT+CGG + chr4_4:62089327-62089346 Msa0693200:CDS 55.0%
GTTGACGCCGATGTTGTAGG+TGG - chr4_4:62089337-62089356 None:intergenic 55.0%
!!! GGTTTTGAGGAAGGTGGCGA+CGG - chr4_4:62089397-62089416 None:intergenic 55.0%
!! GGAGATGTTGGTGTTGGCGA+AGG - chr4_4:62089475-62089494 None:intergenic 55.0%
!! GGTGACGGAGATGTTGGTGT+TGG - chr4_4:62089481-62089500 None:intergenic 55.0%
!! GGTTACGGTGACGGAGATGT+TGG - chr4_4:62089487-62089506 None:intergenic 55.0%
GTTGGAGACGGTTACGGTGA+CGG - chr4_4:62089496-62089515 None:intergenic 55.0%
!! GAGGGGAGTTTTGTGAGGGA+AGG - chr4_4:62089528-62089547 None:intergenic 55.0%
GGTTATCCATTGTTGGGCGG+AGG - chr4_4:62089547-62089566 None:intergenic 55.0%
GGGATGGTAAGGGAGGATGT+TGG - chr4_4:62089571-62089590 None:intergenic 55.0%
GACGGCGATACGGTTGAAGA+TGG - chr4_4:62089598-62089617 None:intergenic 55.0%
CGTAGTTAAGTGCGTCGGGT+TGG - chr4_4:62089899-62089918 None:intergenic 55.0%
! TTGGCCTTCTTTGGGTGACC+CGG + chr4_4:62090064-62090083 Msa0693200:CDS 55.0%
! AAACTCACACCGGGTTGACC+CGG - chr4_4:62090086-62090105 None:intergenic 55.0%
AGCAAGTGGCAAGGTCAGAC+AGG - chr4_4:62090571-62090590 None:intergenic 55.0%
! ATTGCTGTTGGCCCTGATGC+GGG - chr4_4:62090932-62090951 None:intergenic 55.0%
! CATTGCTGTTGGCCCTGATG+CGG - chr4_4:62090933-62090952 None:intergenic 55.0%
GCATCAGGGCCAACAGCAAT+GGG + chr4_4:62090932-62090951 Msa0693200:CDS 55.0%
! ATTGCTGTTGGCCCTGATGC+GGG - chr4_4:62090932-62090951 None:intergenic 55.0%
! CATTGCTGTTGGCCCTGATG+CGG - chr4_4:62090933-62090952 None:intergenic 55.0%
GCATCAGGGCCAACAGCAAT+GGG + chr4_4:62090932-62090951 Msa0693200:CDS 55.0%
GATGCAGGACCCATTGCTGT+TGG - chr4_4:62090971-62090990 None:intergenic 55.0%
AATGGGGCCATCAGAGTCAC+CGG + chr4_4:62091003-62091022 Msa0693200:CDS 55.0%
GACGATTCCGGTGACTCTGA+TGG - chr4_4:62091013-62091032 None:intergenic 55.0%
GCATGGGACCTCAGTGAATC+GGG - chr4_4:62091163-62091182 None:intergenic 55.0%
CGCATGGGACCTCAGTGAAT+CGG - chr4_4:62091164-62091183 None:intergenic 55.0%
CGATTCACTGAGGTCCCATG+CGG + chr4_4:62091162-62091181 Msa0693200:CDS 55.0%
ATTCATGGCGTAGGCCGCAT+GGG - chr4_4:62091179-62091198 None:intergenic 55.0%
TGACGGCGAGGTGCAAATTC+AGG - chr4_4:62091415-62091434 None:intergenic 55.0%
GGACTTTGAATCCAGCGACC+TGG + chr4_4:62093117-62093136 Msa0693200:intron 55.0%
!! GTAGGTGGCGGAGGAGAAGT+TGG - chr4_4:62089322-62089341 None:intergenic 60.0%
GACGCCGATGTTGTAGGTGG+CGG - chr4_4:62089334-62089353 None:intergenic 60.0%
!! TGTGGGTGGTGGGAGGTTGT+CGG - chr4_4:62089373-62089392 None:intergenic 60.0%
AGGAAGGTGGCGACGGTTGT+GGG - chr4_4:62089390-62089409 None:intergenic 60.0%
!! TGTTGGTGTTGGCGAAGGCG+CGG - chr4_4:62089470-62089489 None:intergenic 60.0%
! GTCGGCGTTGGAGACGGTTA+CGG - chr4_4:62089502-62089521 None:intergenic 60.0%
! AGGGATGTCGGCGTTGGAGA+CGG - chr4_4:62089508-62089527 None:intergenic 60.0%
!! GGCGGAGGGGAGTTTTGTGA+GGG - chr4_4:62089532-62089551 None:intergenic 60.0%
AACTCCCCTCCGCCCAACAA+TGG + chr4_4:62089538-62089557 Msa0693200:CDS 60.0%
! TGGTAACGTCGTAGCCACGG+CGG - chr4_4:62089791-62089810 None:intergenic 60.0%
TGGCCTTCTTTGGGTGACCC+GGG + chr4_4:62090065-62090084 Msa0693200:CDS 60.0%
TGACCCGGGTCACCCAAAGA+AGG - chr4_4:62090071-62090090 None:intergenic 60.0%
! AACTCACACCGGGTTGACCC+GGG - chr4_4:62090085-62090104 None:intergenic 60.0%
GGGTCAACCCGGTGTGAGTT+TGG + chr4_4:62090085-62090104 Msa0693200:CDS 60.0%
AGGCAATGGGACCCGCATCA+GGG + chr4_4:62090918-62090937 Msa0693200:intron 60.0%
CGCATCAGGGCCAACAGCAA+TGG + chr4_4:62090931-62090950 Msa0693200:CDS 60.0%
GATGCGGGTCCCATTGCTGT+TGG - chr4_4:62090944-62090963 None:intergenic 60.0%
ACAGCAATGGGACCCGCATC+AGG + chr4_4:62090944-62090963 Msa0693200:CDS 60.0%
CAGCAATGGGACCCGCATCA+GGG + chr4_4:62090945-62090964 Msa0693200:CDS 60.0%
CGCATCAGGGCCAACAGCAA+TGG + chr4_4:62090931-62090950 Msa0693200:CDS 60.0%
ATTGCCGTGGGCTCAGATGC+AGG - chr4_4:62090986-62091005 None:intergenic 60.0%
TGCATCTGAGCCCACGGCAA+TGG + chr4_4:62090985-62091004 Msa0693200:CDS 60.0%
GCATCTGAGCCCACGGCAAT+GGG + chr4_4:62090986-62091005 Msa0693200:CDS 60.0%
CATCTGAGCCCACGGCAATG+GGG + chr4_4:62090987-62091006 Msa0693200:CDS 60.0%
TCTGATGGCCCCATTGCCGT+GGG - chr4_4:62090998-62091017 None:intergenic 60.0%
CATTCATGGCGTAGGCCGCA+TGG - chr4_4:62091180-62091199 None:intergenic 60.0%
TTTGCACCTCGCCGTCACAG+TGG + chr4_4:62091418-62091437 Msa0693200:intron 60.0%
CAGGGACCATTGTGACAGCG+AGG + chr4_4:62092498-62092517 Msa0693200:intron 60.0%
AGCGACCTGGGTTTGACTCC+CGG + chr4_4:62093130-62093149 Msa0693200:intron 60.0%
ACCTGGGTTTGACTCCCGGT+AGG + chr4_4:62093134-62093153 Msa0693200:intron 60.0%
TCCTACCGGGAGTCAAACCC+AGG - chr4_4:62093138-62093157 None:intergenic 60.0%
! GCCGATGTTGTAGGTGGCGG+AGG - chr4_4:62089331-62089350 None:intergenic 65.0%
TGGTGGGAGGTTGTCGGCGA+TGG - chr4_4:62089367-62089386 None:intergenic 65.0%
TGGCGACGGTTGTGGGTGGT+GGG - chr4_4:62089383-62089402 None:intergenic 65.0%
AAGGTGGCGACGGTTGTGGG+TGG - chr4_4:62089387-62089406 None:intergenic 65.0%
GAGGAAGGTGGCGACGGTTG+TGG - chr4_4:62089391-62089410 None:intergenic 65.0%
GAGGGAAGGGATGTCGGCGT+TGG - chr4_4:62089514-62089533 None:intergenic 65.0%
!! GGGCGGAGGGGAGTTTTGTG+AGG - chr4_4:62089533-62089552 None:intergenic 65.0%
GTCGTAGCCACGGCGGAAAG+CGG - chr4_4:62089784-62089803 None:intergenic 65.0%
TTGGGTGACCCGGGTCAACC+CGG + chr4_4:62090074-62090093 Msa0693200:CDS 65.0%
GATGCGGGTCCCATTGCCTG+TGG - chr4_4:62090917-62090936 None:intergenic 65.0%
CAGGCAATGGGACCCGCATC+AGG + chr4_4:62090917-62090936 Msa0693200:intron 65.0%
GGGTCCTGCATCTGAGCCCA+CGG + chr4_4:62090979-62090998 Msa0693200:CDS 65.0%
CTCTGATGGCCCCATTGCCG+TGG - chr4_4:62090999-62091018 None:intergenic 65.0%
CAAGGACCACTGTGACGGCG+AGG - chr4_4:62091427-62091446 None:intergenic 65.0%
GGGAGTCAAACCCAGGTCGC+TGG - chr4_4:62093131-62093150 None:intergenic 65.0%
!! CGACGGTTGTGGGTGGTGGG+AGG - chr4_4:62089380-62089399 None:intergenic 70.0%
GTGGCGACGGTTGTGGGTGG+TGG - chr4_4:62089384-62089403 None:intergenic 70.0%
! GTTGGCGAAGGCGCGGAGGA+TGG - chr4_4:62089463-62089482 None:intergenic 70.0%
!! TGGTGTTGGCGAAGGCGCGG+AGG - chr4_4:62089467-62089486 None:intergenic 70.0%
GTAGCCACGGCGGAAAGCGG+CGG - chr4_4:62089781-62089800 None:intergenic 70.0%
AGCGGCGGAGCTGGGTGGTG+AGG - chr4_4:62089766-62089785 None:intergenic 75.0%
CGGAAAGCGGCGGAGCTGGG+TGG - chr4_4:62089771-62089790 None:intergenic 75.0%
CGGCGGAAAGCGGCGGAGCT+GGG - chr4_4:62089774-62089793 None:intergenic 75.0%
ACGGCGGAAAGCGGCGGAGC+TGG - chr4_4:62089775-62089794 None:intergenic 75.0%
! AGCTCCGCCGCTTTCCGCCG+TGG + chr4_4:62089774-62089793 Msa0693200:CDS 75.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 62089210 62093713 62089210 ID=Msa0693200;Name=Msa0693200
chr4_4 mRNA 62089210 62093713 62089210 ID=Msa0693200-mRNA-1;Parent=Msa0693200;Name=Msa0693200-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0.66|1|0.5|0.33|3|197|542
chr4_4 exon 62089210 62090319 62089210 ID=Msa0693200-mRNA-1:exon:17286;Parent=Msa0693200-mRNA-1
chr4_4 exon 62090920 62091277 62090920 ID=Msa0693200-mRNA-1:exon:17287;Parent=Msa0693200-mRNA-1
chr4_4 exon 62093356 62093713 62093356 ID=Msa0693200-mRNA-1:exon:17288;Parent=Msa0693200-mRNA-1
chr4_4 CDS 62089210 62090319 62089210 ID=Msa0693200-mRNA-1:cds;Parent=Msa0693200-mRNA-1
chr4_4 CDS 62090920 62091277 62090920 ID=Msa0693200-mRNA-1:cds;Parent=Msa0693200-mRNA-1
chr4_4 CDS 62093356 62093516 62093356 ID=Msa0693200-mRNA-1:cds;Parent=Msa0693200-mRNA-1
chr4_4 three_prime_UTR 62093517 62093713 62093517 ID=Msa0693200-mRNA-1:three_prime_utr;Parent=Msa0693200-mRNA-1
Gene Sequence

>Msa0693200

TTCCACTTACTTCTTTCCTTCCTCAATCTCACCCCTCACTCAAAAATCAAAATGGCAGTTCCTTTTCACTTACTTCTTCTTCTTCTTCTCCTTCTCCTTCTCTCAACTTCCAACTTCTCCTCCGCCACCTACAACATCGGCGTCAACTACGGCACCATCGCCGACAACCTCCCACCACCCACAACCGTCGCCACCTTCCTCAAAACCCAAACCACAATCACCCACATTAAAATCTTCGACACAAACTCTTCCATCCTCCGCGCCTTCGCCAACACCAACATCTCCGTCACCGTAACCGTCTCCAACGCCGACATCCCTTCCCTCACAAAACTCCCCTCCGCCCAACAATGGATAACCACCAACATCCTCCCTTACCATCCCAAAACCATCTTCAACCGTATCGCCGTCGGTAACGAAATCCTCGCAACTTCAGACAAAACCTTAATAGCACACATTCTTCCCGCCATGAATGCACTTCATCAAGCTCTCACTCTTTCAAATCTCACTCACATTCAAATCACATCTCCTAACTCACTCGGCATTCTCTCTTCATCCTCACCACCCAGCTCCGCCGCTTTCCGCCGTGGCTACGACGTTACCATCTTCACTCCCATACTCAAATTCCACCGTGAAACTAAATCTCCTTTCATGGTTAACCCGTATCCGTTTTTCGGTATTTCATCAAACCAACCCGACGCACTTAACTACGCTTTGTTTAAACCAAACGGTGGCGTTTTTGATAAAGCTACTGGAATAAACTACACCAACATGTTTGACGCTCAAATGGATGCGGTTTATTCGGCGATGAAGAAAGTGGGTTATGGTGACGTGGATTTGGTTATTGGAGAAACGGGTTGGCCTTCTTTGGGTGACCCGGGTCAACCCGGTGTGAGTTTGGAAAATGCAGTTTCTTATAATGGGAATCTTATTAAGCATGTTAATTCTGGGAAAGGAACTCCTTTGATGCCTAATAGAACCTTTGAGACTTACATTTTCTCATTGTTTAATGAGAATCTTAAACCTACTATTTCGGAGCAGAATTACGGGTTGTTTAAACCGGATCTTACACCGGTTTATGACGTTGGGGTTTTAACCCAAAAACATCAACAGGCAATGGGACCCGCATCAGGGCCAACAGCAATGGGACCCGCATCAGGGCCAACAGCAATGGGTCCTGCATCTGAGCCCACGGCAATGGGGCCATCAGAGTCACCGGAATCGTCTCCTTCAAAGAAATGGTGCGTGCCAAAGACGAATGCTAGTGAGAAAGCGTTGCAGGCAAACATTGACTATGTGTGCAGCCATGGGATAGATTGTGGGCCTATAAAGAATGGTGGGCCGTGTTATAAGCCCGATTCACTGAGGTCCCATGCGGCCTACGCCATGAATGCATATTATCAGAAATCTGGTCACCACGATTCTGATTGTGATTTTGGACACACTGGAGTCATTACTTACACAGACCCTAGTTCTGAGACATGTAAGTTTCCATATGCAGCTACAAGTTCAGGGCCAAATGTCAAAAAGCCTGATACAGATGGTGGCTCACTCAAATCTGCCACTTCCAAACTTAGATTATATCACTTCTTATTTTATCTTCAATTTCTTATTTTTCTCTGTTTTCTTTAA
Protein sequence

>Msa0693200

FHLLLSFLNLTPHSKIKMAVPFHLLLLLLLLLLLSTSNFSSATYNIGVNYGTIADNLPPPTTVATFLKTQTTITHIKIFDTNSSILRAFANTNISVTVTVSNADIPSLTKLPSAQQWITTNILPYHPKTIFNRIAVGNEILATSDKTLIAHILPAMNALHQALTLSNLTHIQITSPNSLGILSSSSPPSSAAFRRGYDVTIFTPILKFHRETKSPFMVNPYPFFGISSNQPDALNYALFKPNGGVFDKATGINYTNMFDAQMDAVYSAMKKVGYGDVDLVIGETGWPSLGDPGQPGVSLENAVSYNGNLIKHVNSGKGTPLMPNRTFETYIFSLFNENLKPTISEQNYGLFKPDLTPVYDVGVLTQKHQQAMGPASGPTAMGPASGPTAMGPASEPTAMGPSESPESSPSKKWCVPKTNASEKALQANIDYVCSHGIDCGPIKNGGPCYKPDSLRSHAAYAMNAYYQKSGHHDSDCDFGHTGVITYTDPSSETCKFPYAATSSGPNVKKPDTDGGSLKSATSKLRLYHFLFYLQFLIFLCFL*