AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0610540

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0610540 MtrunA17_Chr4g0043511 97.485 517 13 0 13 529 33 549 0.0 1036
Msa0610540 MtrunA17_Chr7g0223961 52.144 443 194 6 42 483 23 448 2.34e-163 471
Msa0610540 MtrunA17_Chr4g0034901 43.008 472 248 9 22 488 9 464 7.76e-136 401
Msa0610540 MtrunA17_Chr3g0144531 42.675 471 247 8 22 488 8 459 4.33e-132 392
Msa0610540 MtrunA17_Chr1g0146831 56.757 333 138 4 26 356 16 344 1.43e-130 385
Msa0610540 MtrunA17_Chr5g0439251 41.176 442 250 8 41 477 24 460 4.75e-110 336
Msa0610540 MtrunA17_Chr1g0177171 40.870 460 249 12 42 484 38 491 1.77e-107 330
Msa0610540 MtrunA17_Chr8g0389741 39.374 447 244 10 42 483 28 452 1.08e-102 318
Msa0610540 MtrunA17_Chr6g0487261 38.197 466 256 12 24 483 15 454 1.68e-102 317
Msa0610540 MtrunA17_Chr1g0155001 44.037 327 176 6 42 363 24 348 1.35e-94 294
Msa0610540 MtrunA17_Chr7g0234821 37.194 449 259 9 43 484 27 459 1.23e-93 293
Msa0610540 MtrunA17_Chr3g0110371 36.452 513 286 15 22 524 3 485 1.35e-92 291
Msa0610540 MtrunA17_Chr1g0161011 36.214 486 273 12 18 495 1 457 2.51e-91 288
Msa0610540 MtrunA17_Chr4g0075031 35.625 480 271 12 42 513 45 494 2.97e-91 288
Msa0610540 MtrunA17_Chr8g0339191 33.898 472 282 10 24 484 7 459 3.01e-90 284
Msa0610540 MtrunA17_Chr8g0378621 35.802 486 272 13 15 491 2 456 2.84e-89 283
Msa0610540 MtrunA17_Chr1g0189111 46.201 329 171 6 33 358 22 347 2.16e-88 278
Msa0610540 MtrunA17_Chr4g0043851 43.103 348 189 7 17 359 7 350 7.80e-87 273
Msa0610540 MtrunA17_Chr3g0121271 35.118 467 265 11 25 483 10 446 7.55e-86 274
Msa0610540 MtrunA17_Chr5g0434591 35.924 476 265 14 18 484 1 445 1.63e-85 273
Msa0610540 MtrunA17_Chr2g0321511 40.909 352 199 7 25 371 10 357 2.88e-85 269
Msa0610540 MtrunA17_Chr4g0046311 34.125 463 279 9 24 477 6 451 1.37e-83 267
Msa0610540 MtrunA17_Chr3g0119541 45.000 320 170 6 42 357 26 343 2.15e-83 263
Msa0610540 MtrunA17_Chr4g0026321 42.188 320 180 5 43 359 30 347 4.35e-83 263
Msa0610540 MtrunA17_Chr2g0285901 40.653 337 194 5 26 359 8 341 1.04e-81 260
Msa0610540 MtrunA17_Chr4g0003281 38.440 359 211 7 8 358 2 358 5.56e-76 245
Msa0610540 MtrunA17_Chr7g0250301 40.498 321 180 7 37 355 3 314 1.81e-70 228
Msa0610540 MtrunA17_Chr4g0064021 38.438 320 191 6 43 358 27 344 7.79e-70 229
Msa0610540 MtrunA17_Chr4g0062771 31.290 473 283 18 25 484 14 457 8.58e-61 207
Msa0610540 MtrunA17_Chr3g0138741 32.983 476 264 19 22 483 20 454 3.21e-59 203
Msa0610540 MtrunA17_Chr4g0039071 37.195 328 183 11 42 360 25 338 9.40e-57 194
Msa0610540 MtrunA17_Chr4g0039021 39.236 288 161 8 66 349 4 281 3.83e-56 190
Msa0610540 MtrunA17_Chr4g0038941 36.677 319 184 10 42 357 52 355 8.49e-56 191
Msa0610540 MtrunA17_Chr2g0306311 29.051 506 291 19 23 489 11 487 3.13e-55 193
Msa0610540 MtrunA17_Chr1g0174261 39.865 296 164 10 72 362 1 287 3.61e-55 189
Msa0610540 MtrunA17_Chr2g0290821 30.303 462 283 15 42 493 28 460 5.05e-55 192
Msa0610540 MtrunA17_Chr7g0253091 29.412 476 290 17 22 483 7 450 6.31e-55 192
Msa0610540 MtrunA17_Chr4g0038961 34.615 338 201 11 24 357 5 326 7.96e-54 184
Msa0610540 MtrunA17_Chr4g0039011 34.169 319 193 9 42 357 42 346 2.04e-53 185
Msa0610540 MtrunA17_Chr2g0294601 34.140 372 224 14 1 366 22 378 3.68e-53 185
Msa0610540 MtrunA17_Chr1g0148391 30.818 477 277 19 23 483 9 448 4.04e-53 187
Msa0610540 MtrunA17_Chr4g0038971 33.819 343 207 11 18 357 1 326 1.29e-52 181
Msa0610540 MtrunA17_Chr6g0461601 29.978 457 276 16 42 483 26 453 1.57e-52 186
Msa0610540 MtrunA17_Chr4g0038981 33.724 341 206 11 18 355 1 324 3.58e-52 180
Msa0610540 MtrunA17_Chr7g0250321 37.801 291 170 7 24 312 10 291 9.98e-52 178
Msa0610540 MtrunA17_Chr4g0076581 31.368 475 277 19 42 503 33 471 1.21e-50 181
Msa0610540 MtrunA17_Chr3g0129341 29.412 459 284 17 42 490 34 462 1.42e-50 180
Msa0610540 MtrunA17_Chr8g0383311 30.000 460 284 16 42 491 43 474 1.65e-50 180
Msa0610540 MtrunA17_Chr2g0294591 34.234 333 202 12 32 358 20 341 8.28e-48 169
Msa0610540 MtrunA17_Chr4g0069801 28.059 474 294 19 24 483 11 451 7.64e-46 167
Msa0610540 MtrunA17_Chr3g0105981 28.924 446 268 17 34 466 19 428 4.22e-40 150
Msa0610540 MtrunA17_Chr5g0436361 33.106 293 185 8 69 356 63 349 1.02e-37 142
Msa0610540 MtrunA17_Chr8g0378381 45.455 88 48 0 397 484 29 116 1.69e-24 98.2
Msa0610540 MtrunA17_Chr8g0378401 46.667 90 46 1 397 486 29 116 3.35e-24 97.8
Msa0610540 MtrunA17_Chr1g0154991 46.429 84 45 0 400 483 20 103 7.67e-23 93.6
Msa0610540 MtrunA17_Chr8g0378361 42.424 99 56 1 397 494 27 125 3.31e-22 94.4
Msa0610540 MtrunA17_Chr4g0040911 47.674 86 44 1 400 484 37 122 1.06e-21 92.4
Msa0610540 MtrunA17_Chr5g0443331 44.915 118 60 4 374 490 85 198 1.32e-20 91.7
Msa0610540 MtrunA17_Chr8g0378371 43.678 87 46 1 398 484 31 114 1.36e-20 87.4
Msa0610540 MtrunA17_Chr3g0096451 42.500 120 64 4 368 484 79 196 1.39e-20 91.7
Msa0610540 MtrunA17_Chr8g0381081 43.750 96 51 2 400 492 57 152 2.73e-20 88.6
Msa0610540 MtrunA17_Chr4g0061401 42.529 87 49 1 397 483 21 106 1.59e-19 87.4
Msa0610540 MtrunA17_Chr7g0271411 48.837 86 42 2 400 484 160 244 5.79e-19 87.8
Msa0610540 MtrunA17_Chr4g0043151 40.449 89 52 1 397 484 18 106 4.52e-18 82.4
Msa0610540 MtrunA17_Chr1g0193131 44.444 81 44 1 398 478 418 497 1.02e-17 86.7
Msa0610540 MtrunA17_Chr1g0213651 39.535 86 52 0 400 485 276 361 1.06e-17 84.7
Msa0610540 MtrunA17_Chr2g0313891 38.372 86 52 1 398 483 28 112 3.07e-17 77.8
Msa0610540 MtrunA17_Chr5g0401301 39.683 126 68 6 366 483 289 414 3.13e-17 84.0
Msa0610540 MtrunA17_Chr2g0304061 42.391 92 52 1 399 490 157 247 3.66e-17 82.8
Msa0610540 MtrunA17_Chr5g0419121 39.080 87 51 1 400 484 22 108 9.94e-17 80.1
Msa0610540 MtrunA17_Chr3g0120401 36.905 84 53 0 400 483 157 240 2.24e-16 79.0
Msa0610540 MtrunA17_Chr4g0018861 45.918 98 47 3 264 360 84 176 3.21e-16 77.8
Msa0610540 MtrunA17_Chr4g0018771 42.857 98 50 3 264 360 86 178 5.42e-16 77.4
Msa0610540 MtrunA17_Chr5g0447651 34.483 87 56 1 400 485 30 116 8.35e-15 70.9
Msa0610540 MtrunA17_Chr4g0076141 37.500 80 49 1 399 477 12 91 1.03e-14 70.1
Msa0610540 MtrunA17_Chr4g0076131 35.227 88 56 1 399 485 27 114 1.10e-14 70.5
Msa0610540 MtrunA17_Chr2g0294581 26.570 207 134 8 42 238 76 274 1.09e-13 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0610540 AT5G24318.1 53.796 461 187 8 26 483 18 455 1.16e-168 485
Msa0610540 AT5G24318.2 54.286 455 182 8 26 477 18 449 2.47e-167 482
Msa0610540 AT3G55430.1 49.552 446 196 9 42 483 29 449 3.27e-146 428
Msa0610540 AT3G46570.1 63.050 341 120 4 23 360 8 345 2.15e-144 419
Msa0610540 AT2G16230.1 41.916 501 262 10 36 529 19 497 8.15e-137 405
Msa0610540 AT2G39640.1 43.838 495 245 9 22 513 8 472 1.13e-135 404
Msa0610540 AT2G39640.1 45.745 94 51 0 395 488 455 548 8.45e-24 105
Msa0610540 AT4G34480.1 44.828 464 228 8 25 484 9 448 3.77e-132 394
Msa0610540 AT5G24318.4 57.988 338 131 5 26 360 18 347 3.69e-131 386
Msa0610540 AT5G24318.3 53.433 335 134 7 152 483 1 316 2.01e-120 357
Msa0610540 AT2G05790.1 42.511 454 243 12 41 484 24 469 1.58e-112 342
Msa0610540 AT4G26830.1 40.466 472 256 9 18 484 1 452 3.89e-109 333
Msa0610540 AT4G26830.2 41.071 448 239 9 42 484 29 456 2.22e-107 328
Msa0610540 AT5G55180.1 40.529 454 236 11 42 484 27 457 3.23e-106 326
Msa0610540 AT5G55180.2 40.716 447 231 11 42 477 27 450 7.42e-104 320
Msa0610540 AT4G34480.3 46.927 358 164 6 130 484 3 337 1.52e-103 317
Msa0610540 AT5G42720.1 43.011 372 200 9 22 384 6 374 3.15e-99 307
Msa0610540 AT4G34480.2 47.198 339 173 6 25 359 9 345 1.69e-97 300
Msa0610540 AT4G29360.1 37.751 498 294 11 25 511 11 503 7.95e-96 301
Msa0610540 AT4G29360.2 38.254 481 282 10 42 511 37 513 5.41e-95 299
Msa0610540 AT2G01630.1 37.199 457 251 11 42 490 23 451 4.07e-94 296
Msa0610540 AT5G56590.1 36.290 496 278 15 42 529 26 491 1.13e-93 295
Msa0610540 AT2G01630.3 36.937 444 244 11 42 477 23 438 2.87e-91 286
Msa0610540 AT1G32860.1 46.087 345 176 7 22 358 6 348 1.36e-89 281
Msa0610540 AT1G30080.2 43.429 350 191 6 14 358 6 353 5.62e-89 279
Msa0610540 AT1G30080.1 43.429 350 191 6 14 358 6 353 5.91e-89 279
Msa0610540 AT1G11820.2 35.477 451 255 11 42 484 44 466 1.54e-88 281
Msa0610540 AT2G27500.2 43.789 322 175 6 42 359 29 348 1.06e-87 275
Msa0610540 AT2G27500.1 43.789 322 175 6 42 359 29 348 2.66e-87 275
Msa0610540 AT3G13560.4 36.123 454 245 11 42 483 26 446 3.16e-87 278
Msa0610540 AT3G13560.1 36.123 454 245 11 42 483 26 446 3.16e-87 278
Msa0610540 AT3G13560.2 36.123 454 245 11 42 483 26 446 3.16e-87 278
Msa0610540 AT3G13560.5 36.123 454 245 11 42 483 26 446 3.16e-87 278
Msa0610540 AT3G13560.3 36.123 454 245 11 42 483 26 446 3.16e-87 278
Msa0610540 AT1G11820.3 35.360 444 251 11 42 477 44 459 2.35e-86 275
Msa0610540 AT3G23770.1 35.177 452 268 8 42 484 37 472 2.59e-86 275
Msa0610540 AT4G14080.1 34.967 449 270 7 42 484 42 474 5.60e-86 274
Msa0610540 AT1G66250.1 35.635 449 254 9 42 483 32 452 1.59e-85 273
Msa0610540 AT4G18340.2 40.730 356 200 7 10 361 6 354 3.19e-82 261
Msa0610540 AT4G18340.1 40.793 353 198 7 10 358 6 351 6.64e-82 261
Msa0610540 AT5G42100.2 44.000 325 174 7 41 359 26 348 1.70e-81 260
Msa0610540 AT5G42100.1 44.000 325 174 7 41 359 26 348 1.80e-81 260
Msa0610540 AT3G07320.1 33.853 449 272 8 43 484 26 456 1.39e-80 259
Msa0610540 AT3G15800.1 43.202 331 179 8 43 367 44 371 5.19e-79 253
Msa0610540 AT2G26600.1 41.562 320 181 6 43 358 35 352 4.25e-78 251
Msa0610540 AT2G27500.3 47.036 253 130 4 110 359 19 270 1.71e-71 231
Msa0610540 AT2G01630.2 35.696 395 218 11 42 428 23 389 8.83e-71 231
Msa0610540 AT1G11820.1 38.006 321 189 8 42 355 44 361 3.02e-66 219
Msa0610540 AT2G26600.2 43.651 252 138 4 110 358 8 258 3.48e-63 209
Msa0610540 AT3G61810.1 36.012 336 194 9 32 357 45 369 2.26e-62 209
Msa0610540 AT5G20390.1 39.349 338 190 11 24 355 13 341 7.27e-61 204
Msa0610540 AT4G16260.1 36.950 341 198 10 22 357 4 332 3.14e-60 202
Msa0610540 AT3G24330.1 30.998 471 285 15 26 484 23 465 7.23e-59 203
Msa0610540 AT5G58090.1 31.057 454 273 16 42 484 22 446 6.27e-57 197
Msa0610540 AT4G16260.2 37.580 314 179 10 49 357 2 303 1.64e-56 192
Msa0610540 AT3G57260.1 33.628 339 210 9 21 357 11 336 2.59e-56 192
Msa0610540 AT5G20340.1 37.690 329 188 11 35 357 36 353 3.71e-56 192
Msa0610540 AT3G57260.2 33.803 355 212 11 13 357 11 352 4.06e-56 192
Msa0610540 AT2G19440.2 30.905 453 275 14 42 484 21 445 1.03e-54 191
Msa0610540 AT2G19440.1 30.905 453 275 14 42 484 21 445 1.03e-54 191
Msa0610540 AT1G64760.1 30.684 453 276 14 42 484 25 449 1.22e-54 191
Msa0610540 AT1G64760.2 30.684 453 276 14 42 484 25 449 1.22e-54 191
Msa0610540 AT3G57270.1 36.025 322 189 12 42 357 27 337 2.71e-54 187
Msa0610540 AT4G17180.1 30.867 473 284 16 26 491 12 448 5.56e-54 189
Msa0610540 AT5G64790.1 29.019 479 300 16 28 495 14 463 8.50e-54 189
Msa0610540 AT4G31140.1 28.753 473 295 17 22 483 7 448 5.88e-53 187
Msa0610540 AT5G20330.1 35.652 345 202 12 22 357 11 344 2.47e-52 181
Msa0610540 AT5G18220.1 27.731 476 296 15 25 484 13 456 4.39e-52 185
Msa0610540 AT5G20870.1 29.058 499 299 21 22 497 7 473 2.57e-50 180
Msa0610540 AT5G20560.1 35.312 337 198 10 25 349 8 336 4.42e-49 172
Msa0610540 AT3G04010.1 26.804 485 313 15 13 484 3 458 1.07e-48 176
Msa0610540 AT5G58480.1 29.536 474 277 18 42 498 26 459 2.30e-48 174
Msa0610540 AT1G33220.1 35.015 337 198 10 24 357 16 334 4.05e-48 170
Msa0610540 AT1G77780.1 33.824 340 212 9 22 357 2 332 6.05e-48 170
Msa0610540 AT3G57240.1 34.969 326 194 13 35 357 28 338 7.30e-46 164
Msa0610540 AT1G77790.1 32.565 347 218 10 16 357 6 341 1.66e-43 158
Msa0610540 AT3G55780.1 32.407 324 204 8 42 355 31 349 1.08e-41 154
Msa0610540 AT5G63225.1 49.425 87 44 0 397 483 22 108 8.67e-27 105
Msa0610540 AT4G09090.1 49.438 89 45 0 395 483 26 114 2.90e-25 100
Msa0610540 AT1G18650.1 45.652 92 50 0 397 488 18 109 8.08e-25 102
Msa0610540 AT5G63230.1 45.977 87 47 0 397 483 23 109 9.18e-25 99.4
Msa0610540 AT1G18650.2 46.154 91 49 0 397 487 18 108 1.33e-24 99.8
Msa0610540 AT5G63240.1 47.126 87 43 1 400 483 40 126 2.06e-23 96.3
Msa0610540 AT4G09464.1 43.820 89 50 0 395 483 26 114 3.81e-23 95.1
Msa0610540 AT4G09467.1 43.820 89 50 0 395 483 26 114 3.81e-23 95.1
Msa0610540 AT4G09462.1 43.820 89 50 0 395 483 24 112 4.79e-23 94.7
Msa0610540 AT4G09465.1 43.820 89 50 0 395 483 26 114 4.83e-23 94.7
Msa0610540 AT1G66855.1 45.455 88 47 1 397 483 23 110 1.17e-22 93.6
Msa0610540 AT2G30933.1 39.716 141 71 5 398 525 80 219 8.68e-22 94.7
Msa0610540 AT3G58100.1 38.596 114 64 3 400 510 41 151 1.50e-21 92.4
Msa0610540 AT4G09466.1 41.573 89 52 0 395 483 26 114 2.23e-21 90.1
Msa0610540 AT5G53600.1 43.478 92 51 1 392 483 21 111 2.36e-21 89.7
Msa0610540 AT1G66870.1 43.011 93 52 1 392 483 18 110 2.48e-21 89.7
Msa0610540 AT1G66870.2 43.011 93 52 1 392 483 45 137 2.87e-21 90.5
Msa0610540 AT3G58100.2 38.596 114 64 3 400 510 117 227 5.27e-21 93.2
Msa0610540 AT4G13600.1 36.275 102 65 0 400 501 61 162 5.51e-21 92.4
Msa0610540 AT5G61130.1 45.455 88 48 0 397 484 18 105 5.54e-21 91.7
Msa0610540 AT2G43670.1 46.512 86 45 1 400 485 35 119 6.61e-21 89.0
Msa0610540 AT5G53610.1 43.678 87 48 1 397 483 25 110 8.02e-21 88.2
Msa0610540 AT1G78520.1 42.857 91 51 1 394 484 26 115 1.03e-20 88.2
Msa0610540 AT1G29380.1 47.674 86 43 2 399 483 147 231 1.18e-20 93.2
Msa0610540 AT1G29380.3 47.674 86 43 2 399 483 147 231 1.41e-20 92.0
Msa0610540 AT1G66852.1 43.011 93 51 2 392 483 18 109 1.52e-19 84.7
Msa0610540 AT5G63250.1 42.708 96 52 1 391 483 33 128 1.66e-19 85.1
Msa0610540 AT5G08000.2 44.706 85 47 0 400 484 40 124 3.49e-19 86.7
Msa0610540 AT1G29380.4 48.750 80 39 2 399 477 147 225 3.89e-19 87.0
Msa0610540 AT1G29380.2 48.750 80 39 2 399 477 147 225 3.89e-19 87.0
Msa0610540 AT5G08000.1 44.318 88 49 0 397 484 18 105 4.21e-19 85.9
Msa0610540 AT4G05430.1 37.374 99 61 1 386 483 9 107 2.04e-18 82.4
Msa0610540 AT4G05430.3 37.374 99 61 1 386 483 34 132 3.35e-18 82.8
Msa0610540 AT5G67460.1 24.079 407 227 15 88 483 42 377 7.32e-18 85.9
Msa0610540 AT2G30933.2 46.914 81 41 2 398 477 80 159 1.18e-17 80.9
Msa0610540 AT2G30933.3 46.914 81 41 2 398 477 80 159 1.18e-17 80.9
Msa0610540 AT2G29735.1 38.202 89 53 1 397 483 28 116 2.17e-17 78.6
Msa0610540 AT4G05430.2 38.710 93 56 1 386 477 34 126 2.91e-17 78.6
Msa0610540 AT2G43660.2 42.045 88 50 1 400 486 35 122 3.38e-17 78.2
Msa0610540 AT2G43660.1 42.045 88 50 1 400 486 34 121 3.77e-17 78.2
Msa0610540 AT4G16165.1 40.909 88 51 1 397 483 23 110 4.02e-17 77.8
Msa0610540 AT1G09460.1 43.689 103 53 4 389 490 127 225 7.28e-17 82.4
Msa0610540 AT1G79480.1 37.931 87 54 0 397 483 308 394 9.40e-17 82.8
Msa0610540 AT1G79480.2 37.931 87 54 0 397 483 307 393 9.42e-17 82.8
Msa0610540 AT2G04910.2 36.364 88 55 1 399 485 14 101 4.18e-16 74.7
Msa0610540 AT5G67460.2 39.362 94 50 2 391 477 278 371 8.41e-16 79.7
Msa0610540 AT3G28250.1 40.506 79 46 1 399 477 2 79 3.36e-15 72.4
Msa0610540 AT5G35740.1 34.066 91 58 2 397 485 27 117 4.48e-15 72.0
Msa0610540 AT2G03505.4 36.667 90 55 1 397 484 18 107 6.01e-15 73.2
Msa0610540 AT2G03505.1 36.667 90 55 1 397 484 18 107 6.01e-15 73.2
Msa0610540 AT2G03505.2 36.667 90 55 1 397 484 18 107 6.01e-15 73.2
Msa0610540 AT2G03505.3 37.805 82 51 0 397 478 18 99 1.07e-14 70.9
Msa0610540 AT2G04910.1 35.366 82 52 1 399 479 14 95 5.60e-14 69.3
Msa0610540 AT1G26450.1 43.662 71 39 1 401 471 22 91 3.55e-13 68.9
Msa0610540 AT2G42930.1 37.975 79 48 1 400 478 40 117 8.48e-13 66.2
Msa0610540 AT1G69295.1 37.037 81 50 1 400 480 21 100 1.40e-12 67.8
Msa0610540 AT1G69295.2 37.037 81 50 1 400 480 17 96 2.08e-12 67.0
Msa0610540 AT1G13830.2 35.897 78 50 0 400 477 35 112 7.09e-12 65.5
Msa0610540 AT1G13830.1 35.443 79 51 0 400 478 21 99 8.45e-12 64.7

Find 171 sgRNAs with CRISPR-Local

Find 360 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACGATTCTGATTGTGATTT+TGG 0.055906 4_2:+58352760 Msa0610540:CDS
GGTGACGTGGATTTGGTTAT+TGG 0.210206 4_2:+58351564 Msa0610540:CDS
GAAAATGCAGTTTCTTATAA+TGG 0.220914 4_2:+58351639 Msa0610540:CDS
TTATTAAGCATGTTAATTCT+TGG 0.233499 4_2:+58351667 Msa0610540:CDS
AGAAACGGGTTGGCCTTCTT+TGG 0.250362 4_2:+58351587 Msa0610540:CDS
GGGAAGAATGTGTGCTATTA+AGG 0.258785 4_2:-58351181 None:intergenic
TTCACGGTGGAATTTGAGTA+TGG 0.267203 4_2:-58351352 None:intergenic
GATACGGTTGAAGATGGTTT+TGG 0.296130 4_2:-58351121 None:intergenic
TTCTCACTAGCATTCGTCTT+TGG 0.296614 4_2:-58352592 None:intergenic
CCATATGCAGCTACAAGTTC+AGG 0.303006 4_2:+58354928 Msa0610540:CDS
GTGGCGACGGTTGTGGGTGG+TGG 0.306966 4_2:-58350913 None:intergenic
AAAATGCAGTTTCTTATAAT+GGG 0.314501 4_2:+58351640 Msa0610540:CDS
GAGAGAATGCCGAGTGAGTT+AGG 0.319234 4_2:-58351267 None:intergenic
TGAAACTAAATCTCCTTTCA+TGG 0.327719 4_2:+58351371 Msa0610540:CDS
ACAGCAATGGGACCCGCATC+AGG 0.328618 4_2:+58352508 Msa0610540:CDS
CACGGCCCACCATTCTTTAT+AGG 0.339685 4_2:-58352667 None:intergenic
AGTGAGCCACCATCTGTATC+AGG 0.341406 4_2:-58354967 None:intergenic
TCAAATGGATGCGGTTTATT+CGG 0.344476 4_2:+58351521 Msa0610540:CDS
GAGGAAGGTGGCGACGGTTG+TGG 0.351074 4_2:-58350920 None:intergenic
AGGAAGGTGGCGACGGTTGT+GGG 0.352793 4_2:-58350919 None:intergenic
AATGTGGGTGATTGTGGTTT+GGG 0.355018 4_2:-58350947 None:intergenic
CAGGCAATGGGACCCGCATC+AGG 0.356382 4_2:+58352481 Msa0610540:intron
ACTATTTCGGAGCAGAATTA+CGG 0.359928 4_2:+58351765 Msa0610540:CDS
TAATGTGGGTGATTGTGGTT+TGG 0.360475 4_2:-58350948 None:intergenic
GAAGTGATATAATCTAAGTT+TGG 0.364134 4_2:-58355004 None:intergenic
TTGGCCTTCTTTGGGTGACC+CGG 0.364508 4_2:+58351596 Msa0610540:CDS
GAAACGGGTTGGCCTTCTTT+GGG 0.373731 4_2:+58351588 Msa0610540:CDS
GAATCTTAAACCTACTATTT+CGG 0.373792 4_2:+58351752 Msa0610540:CDS
TATGGTTAACGTATGCGATT+TGG 0.374278 4_2:+58355104 Msa0610540:three_prime_UTR
TGCTAGTGAGAAAGCGTTGC+AGG 0.375426 4_2:+58352603 Msa0610540:CDS
TTTCTGATAATATGCATTCA+TGG 0.378067 4_2:-58352728 None:intergenic
TATGTTCCTAGTTAAGATTA+TGG 0.378482 4_2:+58355086 Msa0610540:three_prime_UTR
ACGGCGGAAAGCGGCGGAGC+TGG 0.378862 4_2:-58351304 None:intergenic
GGGTCAACCCGGTGTGAGTT+TGG 0.380428 4_2:+58351617 Msa0610540:CDS
GCATCAGGGCCAACAGCAAT+GGG 0.380732 4_2:+58352523 Msa0610540:CDS
CTATTTCGGAGCAGAATTAC+GGG 0.380969 4_2:+58351766 Msa0610540:CDS
TTACACCGGTTTATGACGTT+GGG 0.381082 4_2:+58351805 Msa0610540:CDS
CGGCGGAAAGCGGCGGAGCT+GGG 0.381878 4_2:-58351303 None:intergenic
TTCTTTGAAGGAGACGATTC+CGG 0.384255 4_2:-58352559 None:intergenic
GGGTTATGGTGACGTGGATT+TGG 0.392613 4_2:+58351557 Msa0610540:CDS
TTGAGTGAGGGGTGAGATTG+AGG 0.399975 4_2:-58350774 None:intergenic
AGAAGAAGAAGTAAGTGAAA+AGG 0.406677 4_2:-58350814 None:intergenic
CAACATGTTTGACGCTCAAA+TGG 0.408790 4_2:+58351506 Msa0610540:CDS
AATGCATATTATCAGAAATC+TGG 0.412484 4_2:+58352733 Msa0610540:CDS
GTTGGTGGTTATCCATTGTT+GGG 0.416350 4_2:-58351082 None:intergenic
GGCACGCACCATTTCTTTGA+AGG 0.417988 4_2:-58352571 None:intergenic
GAATTACGGGTTGTTTAAAC+CGG 0.424322 4_2:+58351779 Msa0610540:CDS
TGGTGGGAGGTTGTCGGCGA+TGG 0.425680 4_2:-58350896 None:intergenic
CCTGAACTTGTAGCTGCATA+TGG 0.426000 4_2:-58354928 None:intergenic
GTAGGTGGCGGAGGAGAAGT+TGG 0.426078 4_2:-58350851 None:intergenic
CGCATGGGACCTCAGTGAAT+CGG 0.426631 4_2:-58352698 None:intergenic
TGTTGGTGGTTATCCATTGT+TGG 0.429432 4_2:-58351083 None:intergenic
AATCGTCTCCTTCAAAGAAA+TGG 0.433918 4_2:+58352563 Msa0610540:CDS
TAAGTCTCAAAGGTTCTATT+AGG 0.441760 4_2:-58351708 None:intergenic
TACGCTTTGTTTAAACCAAA+CGG 0.443987 4_2:+58351447 Msa0610540:CDS
CGCATCAATTTGACCTAGGA+AGG 0.445031 4_2:+58355154 Msa0610540:three_prime_UTR
GGTTATCCATTGTTGGGCGG+AGG 0.447089 4_2:-58351076 None:intergenic
CGCATCAGGGCCAACAGCAA+TGG 0.447940 4_2:+58352522 Msa0610540:CDS
TAATTCTGCTCCGAAATAGT+AGG 0.456073 4_2:-58351762 None:intergenic
ATTGCTGTTGGCCCTGATGC+GGG 0.456448 4_2:-58352493 None:intergenic
ATTGCTGTTGGCCCTGATGC+GGG 0.456448 4_2:-58352520 None:intergenic
GCATCAGGGCCAACAGCAAT+GGG 0.460085 4_2:+58352496 Msa0610540:CDS
TTTGAGTATGGGAGTGAAGA+TGG 0.460178 4_2:-58351340 None:intergenic
TGTGGGTGGTGGGAGGTTGT+CGG 0.463071 4_2:-58350902 None:intergenic
TCTGATGGCCCCATTGCTGT+TGG 0.465469 4_2:-58352532 None:intergenic
GGATTTGGTTATTGGAGAAA+CGG 0.465568 4_2:+58351572 Msa0610540:CDS
AAAATACAAATACCCTTCCT+AGG 0.466441 4_2:-58355167 None:intergenic
GCATGGGACCTCAGTGAATC+GGG 0.468310 4_2:-58352697 None:intergenic
GTTATCCATTGTTGGGCGGA+GGG 0.469391 4_2:-58351075 None:intergenic
TGGCCTTCTTTGGGTGACCC+GGG 0.470182 4_2:+58351597 Msa0610540:CDS
CGCATCAGGGCCAACAGCAA+TGG 0.474043 4_2:+58352495 Msa0610540:CDS
AGCTTGATGAAGTGCATTCA+TGG 0.474444 4_2:-58351205 None:intergenic
AGCGGCGGAGCTGGGTGGTG+AGG 0.479049 4_2:-58351295 None:intergenic
CGTTAACCATAATCTTAACT+AGG 0.481090 4_2:-58355092 None:intergenic
CATTCATGGCGTAGGCCGCA+TGG 0.487790 4_2:-58352714 None:intergenic
AAGCATGTTAATTCTTGGAA+AGG 0.488488 4_2:+58351672 Msa0610540:CDS
GATTTGGTTATTGGAGAAAC+GGG 0.488611 4_2:+58351573 Msa0610540:CDS
AAACTCACACCGGGTTGACC+CGG 0.489870 4_2:-58351615 None:intergenic
AAAACCCCAACGTCATAAAC+CGG 0.493575 4_2:-58351810 None:intergenic
GCGATGAAGAAAGTGGGTTA+TGG 0.499058 4_2:+58351543 Msa0610540:CDS
CGTAGTTAAGTGCGTCGGGT+TGG 0.507173 4_2:-58351428 None:intergenic
GGGATGGTAAGGGAGGATGT+TGG 0.509749 4_2:-58351100 None:intergenic
AAAGCGTAGTTAAGTGCGTC+GGG 0.510135 4_2:-58351432 None:intergenic
GCCGATGTTGTAGGTGGCGG+AGG 0.512504 4_2:-58350860 None:intergenic
TTTCGTTACCGACGGCGATA+CGG 0.515705 4_2:-58351137 None:intergenic
GTCGGCGTTGGAGACGGTTA+CGG 0.516344 4_2:-58351031 None:intergenic
TGGCGACGGTTGTGGGTGGT+GGG 0.516389 4_2:-58350912 None:intergenic
CTTACACCGGTTTATGACGT+TGG 0.517304 4_2:+58351804 Msa0610540:CDS
GTAGTTGACGCCGATGTTGT+AGG 0.518828 4_2:-58350869 None:intergenic
TGAGGAAGGAAAGAAGTAAG+TGG 0.520063 4_2:-58350756 None:intergenic
GTGAGGGGTGAGATTGAGGA+AGG 0.520861 4_2:-58350770 None:intergenic
GTTGGCGAAGGCGCGGAGGA+TGG 0.522927 4_2:-58350992 None:intergenic
TGCAGCCATGGGATAGATTG+TGG 0.523813 4_2:+58352643 Msa0610540:CDS
TGAAAGGAGATTTAGTTTCA+CGG 0.526342 4_2:-58351368 None:intergenic
CGACGGTTGTGGGTGGTGGG+AGG 0.527264 4_2:-58350909 None:intergenic
TGAGAAAATGTAAGTCTCAA+AGG 0.527355 4_2:-58351718 None:intergenic
AGGGATGTCGGCGTTGGAGA+CGG 0.529818 4_2:-58351037 None:intergenic
TCACGGTGGAATTTGAGTAT+GGG 0.531714 4_2:-58351351 None:intergenic
TACAACATCGGCGTCAACTA+CGG 0.534301 4_2:+58350871 Msa0610540:CDS
CATATGCAGCTACAAGTTCA+GGG 0.535774 4_2:+58354929 Msa0610540:CDS
GATGCGGGTCCCATTGCTGT+TGG 0.536050 4_2:-58352505 None:intergenic
GACGGCGATACGGTTGAAGA+TGG 0.536299 4_2:-58351127 None:intergenic
ATTGACTATGTGTGCAGCCA+TGG 0.539482 4_2:+58352631 Msa0610540:CDS
GTAATGTAACCACAGGCAAT+GGG 0.541692 4_2:+58352469 Msa0610540:intron
ATTCATGGCGTAGGCCGCAT+GGG 0.541939 4_2:-58352713 None:intergenic
GCAGCCATGGGATAGATTGT+GGG 0.542242 4_2:+58352644 Msa0610540:CDS
ATGGTAAGGGAGGATGTTGG+TGG 0.545195 4_2:-58351097 None:intergenic
AACTCCCCTCCGCCCAACAA+TGG 0.547508 4_2:+58351070 Msa0610540:CDS
TCCTCCGCCACCTACAACAT+CGG 0.548536 4_2:+58350859 Msa0610540:CDS
TCATAAACCGGTGTAAGATC+CGG 0.549529 4_2:-58351798 None:intergenic
CATTGCTGTTGGCCCTGATG+CGG 0.551147 4_2:-58352521 None:intergenic
GATTGTGGGCCTATAAAGAA+TGG 0.554406 4_2:+58352658 Msa0610540:CDS
AACTCACACCGGGTTGACCC+GGG 0.554491 4_2:-58351614 None:intergenic
AAGGTTCTATTAGGCATCAA+AGG 0.556375 4_2:-58351699 None:intergenic
TGATGAAGTGCATTCATGGC+GGG 0.556738 4_2:-58351201 None:intergenic
AGAAGTTGGAAGTTGAGAGA+AGG 0.556925 4_2:-58350837 None:intergenic
TTATCCATTGTTGGGCGGAG+GGG 0.557483 4_2:-58351074 None:intergenic
CATTGCTGTTGGCCCTGATG+CGG 0.558259 4_2:-58352494 None:intergenic
GAGGGAAGGGATGTCGGCGT+TGG 0.558404 4_2:-58351043 None:intergenic
TGGTTATTGGAGAAACGGGT+TGG 0.560351 4_2:+58351577 Msa0610540:CDS
ATATAATCTAAGTTTGGAAG+TGG 0.562769 4_2:-58354998 None:intergenic
TTGGGTGACCCGGGTCAACC+CGG 0.564347 4_2:+58351606 Msa0610540:CDS
CAGCAATGGGACCCGCATCA+GGG 0.567971 4_2:+58352509 Msa0610540:CDS
GTTTGACGCTCAAATGGATG+CGG 0.568510 4_2:+58351512 Msa0610540:CDS
AGCTCCGCCGCTTTCCGCCG+TGG 0.568513 4_2:+58351306 Msa0610540:CDS
GACGCCGATGTTGTAGGTGG+CGG 0.571038 4_2:-58350863 None:intergenic
AATGGGGCCATCAGAGTCAC+CGG 0.572470 4_2:+58352540 Msa0610540:CDS
TGACCCGGGTCACCCAAAGA+AGG 0.573068 4_2:-58351600 None:intergenic
CAAAGCGTAGTTAAGTGCGT+CGG 0.573159 4_2:-58351433 None:intergenic
ATAATATGCATTCATGGCGT+AGG 0.573503 4_2:-58352722 None:intergenic
GTAGCCACGGCGGAAAGCGG+CGG 0.576860 4_2:-58351310 None:intergenic
GGAGATGTTGGTGTTGGCGA+AGG 0.579098 4_2:-58351004 None:intergenic
CATTTGAGCGTCAAACATGT+TGG 0.579173 4_2:-58351505 None:intergenic
AGGCAATGGGACCCGCATCA+GGG 0.580179 4_2:+58352482 Msa0610540:intron
ATCTTCAACCGTATCGCCGT+CGG 0.580682 4_2:+58351129 Msa0610540:CDS
AAGGTGGCGACGGTTGTGGG+TGG 0.581254 4_2:-58350916 None:intergenic
TGCGAGGATTTCGTTACCGA+CGG 0.583665 4_2:-58351145 None:intergenic
GTCGTAGCCACGGCGGAAAG+CGG 0.584047 4_2:-58351313 None:intergenic
TGTTGGTGTTGGCGAAGGCG+CGG 0.584813 4_2:-58350999 None:intergenic
CGGAAAGCGGCGGAGCTGGG+TGG 0.590199 4_2:-58351300 None:intergenic
TTATTCGGCGATGAAGAAAG+TGG 0.592387 4_2:+58351536 Msa0610540:CDS
GACGATTCCGGTGACTCTGA+TGG 0.592672 4_2:-58352547 None:intergenic
GTTGGAGACGGTTACGGTGA+CGG 0.594352 4_2:-58351025 None:intergenic
CTCTCGCATCAATTTGACCT+AGG 0.597172 4_2:+58355150 Msa0610540:three_prime_UTR
TACACCGGTTTATGACGTTG+GGG 0.597317 4_2:+58351806 Msa0610540:CDS
GTTTAAACCGGATCTTACAC+CGG 0.598400 4_2:+58351791 Msa0610540:CDS
GGTTACGGTGACGGAGATGT+TGG 0.608393 4_2:-58351016 None:intergenic
GGATACGGGTTAACCATGAA+AGG 0.614772 4_2:-58351384 None:intergenic
TATTCGGCGATGAAGAAAGT+GGG 0.614835 4_2:+58351537 Msa0610540:CDS
ATCACATCTCCTAACTCACT+CGG 0.619348 4_2:+58351258 Msa0610540:CDS
AGATGGTAACGTCGTAGCCA+CGG 0.622998 4_2:-58351323 None:intergenic
TAGGCCCACAATCTATCCCA+TGG 0.624924 4_2:-58352648 None:intergenic
TGTGGGCCTATAAAGAATGG+TGG 0.629073 4_2:+58352661 Msa0610540:CDS
CAAAATCACAATCAGAATCG+TGG 0.635094 4_2:-58352759 None:intergenic
CTAGGTCAAATTGATGCGAG+AGG 0.636449 4_2:-58355149 None:intergenic
GTGGGCCTATAAAGAATGGT+GGG 0.638570 4_2:+58352662 Msa0610540:CDS
TTGACTATGTGTGCAGCCAT+GGG 0.639016 4_2:+58352632 Msa0610540:CDS
GGTGGTTATCCATTGTTGGG+CGG 0.649092 4_2:-58351079 None:intergenic
AGTGAATCGGGCTTATAACA+CGG 0.650467 4_2:-58352685 None:intergenic
GGTGACGGAGATGTTGGTGT+TGG 0.651352 4_2:-58351010 None:intergenic
GTTGACGCCGATGTTGTAGG+TGG 0.658363 4_2:-58350866 None:intergenic
GCATCAATTTGACCTAGGAA+GGG 0.662138 4_2:+58355155 Msa0610540:three_prime_UTR
GAAAGTGGGTTATGGTGACG+TGG 0.664611 4_2:+58351551 Msa0610540:CDS
CGATTCACTGAGGTCCCATG+CGG 0.688080 4_2:+58352699 Msa0610540:CDS
TGGTGTTGGCGAAGGCGCGG+AGG 0.689311 4_2:-58350996 None:intergenic
GCTTTGTTTAAACCAAACGG+TGG 0.698649 4_2:+58351450 Msa0610540:CDS
TTGATGAAGTGCATTCATGG+CGG 0.706655 4_2:-58351202 None:intergenic
AAGGAGATTTAGTTTCACGG+TGG 0.707590 4_2:-58351365 None:intergenic
CATCAGGGCCAACAGCAATG+GGG 0.711415 4_2:+58352524 Msa0610540:CDS
GTTATAAGCCCGATTCACTG+AGG 0.751026 4_2:+58352689 Msa0610540:CDS
TGGTAACGTCGTAGCCACGG+CGG 0.808289 4_2:-58351320 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATATAATAAAAACATTTAA+GGG - chr4_2:58354100-58354119 None:intergenic 10.0%
!! ACATATAATAAAAACATTTA+AGG - chr4_2:58354101-58354120 None:intergenic 10.0%
!!! TTAATCATATGTTTTTTTAC+AGG - chr4_2:58352898-58352917 None:intergenic 15.0%
!!! ATTTAAAGTGCATAATTTAA+TGG + chr4_2:58353816-58353835 Msa0610540:intron 15.0%
!!! ATTTTGAAACAATTTAGATT+AGG + chr4_2:58354597-58354616 Msa0610540:intron 15.0%
!! AGGTATAATAAAATAAAAAC+AGG - chr4_2:58354713-58354732 None:intergenic 15.0%
!! AAAAAAACTTATGAGAATAT+GGG + chr4_2:58354873-58354892 Msa0610540:intron 15.0%
!! AAAATGCAGTTTCTTATAAT+GGG + chr4_2:58351640-58351659 Msa0610540:CDS 20.0%
!! TTATTAAGCATGTTAATTCT+TGG + chr4_2:58351667-58351686 Msa0610540:CDS 20.0%
!! AAAGAAAAAATGTATAGGTA+CGG - chr4_2:58351857-58351876 None:intergenic 20.0%
!! TAAAATAAACAGATAAACGA+AGG - chr4_2:58351880-58351899 None:intergenic 20.0%
!! ATTAAAATACAGTTAGAGTA+AGG - chr4_2:58352332-58352351 None:intergenic 20.0%
!! CAAATAAGTAAAACTTACTA+GGG - chr4_2:58352813-58352832 None:intergenic 20.0%
!! ACAAATAAGTAAAACTTACT+AGG - chr4_2:58352814-58352833 None:intergenic 20.0%
!!! TTACATGAGTTTAATTTTGA+TGG + chr4_2:58352839-58352858 Msa0610540:intron 20.0%
!!! TTTTACAGGATTTAATCATA+TGG - chr4_2:58352884-58352903 None:intergenic 20.0%
!!! AATATGTATGAAATTTTCTG+TGG + chr4_2:58353215-58353234 Msa0610540:intron 20.0%
!! ATAATCAAATGTGTTATGAA+TGG + chr4_2:58353244-58353263 Msa0610540:intron 20.0%
!! ATTTAACTATTAGTCAGAAT+TGG + chr4_2:58353488-58353507 Msa0610540:intron 20.0%
!! CAAGATTAAATTTATGTTGT+AGG + chr4_2:58353635-58353654 Msa0610540:intron 20.0%
!! CAAGTGACATAAAATTATAA+AGG - chr4_2:58354193-58354212 None:intergenic 20.0%
!! TTCAAAATAACAACAAATCT+AGG - chr4_2:58354585-58354604 None:intergenic 20.0%
!! GAAAAAAACTTATGAGAATA+TGG + chr4_2:58354872-58354891 Msa0610540:intron 20.0%
! TTTGATGAAATACCGAAAAA+CGG - chr4_2:58351408-58351427 None:intergenic 25.0%
! GAAAATGCAGTTTCTTATAA+TGG + chr4_2:58351639-58351658 Msa0610540:CDS 25.0%
! GAATCTTAAACCTACTATTT+CGG + chr4_2:58351752-58351771 Msa0610540:CDS 25.0%
! GAAGGAAAGAAAAAATGTAT+AGG - chr4_2:58351862-58351881 None:intergenic 25.0%
!!! CGTTTATCTGTTTATTTTAG+TGG + chr4_2:58351881-58351900 Msa0610540:intron 25.0%
!!! GCTTTTGGTTAAAATTTGAA+AGG + chr4_2:58352123-58352142 Msa0610540:intron 25.0%
! TAAGGTTATGTTTATTGCTT+TGG - chr4_2:58352314-58352333 None:intergenic 25.0%
! TTTCTGATAATATGCATTCA+TGG - chr4_2:58352731-58352750 None:intergenic 25.0%
! AATGCATATTATCAGAAATC+TGG + chr4_2:58352733-58352752 Msa0610540:CDS 25.0%
!! TTGTATTTTATCATGAGTCA+AGG - chr4_2:58352981-58353000 None:intergenic 25.0%
! AAGTAAACACAATATGCTAA+CGG - chr4_2:58353026-58353045 None:intergenic 25.0%
! TTTACTTGTCTCATGAAAAA+TGG + chr4_2:58353039-58353058 Msa0610540:intron 25.0%
!! TTGTATTTTATCATGAGTCA+AGG - chr4_2:58352981-58353000 None:intergenic 25.0%
! AAGTAAACACAATATGCTAA+CGG - chr4_2:58353026-58353045 None:intergenic 25.0%
! TTTACTTGTCTCATGATATT+TGG + chr4_2:58353124-58353143 Msa0610540:intron 25.0%
! AAATTTAATCTTGCAACAAC+AGG - chr4_2:58353628-58353647 None:intergenic 25.0%
! CATCATTAATTCTTAGACTA+TGG - chr4_2:58353722-58353741 None:intergenic 25.0%
! AGAGAATCATATGAGATTTA+GGG + chr4_2:58353873-58353892 Msa0610540:intron 25.0%
! AAAGTAACCCAAACAAAAAT+GGG - chr4_2:58353918-58353937 None:intergenic 25.0%
!! TTTGTATTTTATACTGAGTC+AGG + chr4_2:58354026-58354045 Msa0610540:intron 25.0%
!! TTGTATTTTATACTGAGTCA+GGG + chr4_2:58354027-58354046 Msa0610540:intron 25.0%
! TCATATAAAAGTGACTTGAA+CGG - chr4_2:58354269-58354288 None:intergenic 25.0%
!!! AATTGATTTTAGTTGAAGCT+AGG + chr4_2:58354402-58354421 Msa0610540:intron 25.0%
! TATGTTTCATACATTTGCAT+GGG - chr4_2:58354774-58354793 None:intergenic 25.0%
! TTATGTTTCATACATTTGCA+TGG - chr4_2:58354775-58354794 None:intergenic 25.0%
! ATATAATCTAAGTTTGGAAG+TGG - chr4_2:58355001-58355020 None:intergenic 25.0%
! GAAGTGATATAATCTAAGTT+TGG - chr4_2:58355007-58355026 None:intergenic 25.0%
! TATGTTCCTAGTTAAGATTA+TGG + chr4_2:58355086-58355105 Msa0610540:three_prime_UTR 25.0%
!!! TTGGAAGTAGATGTTTTTTT+TGG + chr4_2:58355123-58355142 Msa0610540:three_prime_UTR 25.0%
!!! TGGAAGTAGATGTTTTTTTT+GGG + chr4_2:58355124-58355143 Msa0610540:three_prime_UTR 25.0%
!!! CATTTTGATTTTTGAGTGAG+GGG - chr4_2:58350788-58350807 None:intergenic 30.0%
!!! CCATTTTGATTTTTGAGTGA+GGG - chr4_2:58350789-58350808 None:intergenic 30.0%
AGAAGAAGAAGTAAGTGAAA+AGG - chr4_2:58350817-58350836 None:intergenic 30.0%
!! TGTGTCGAAGATTTTAATGT+GGG - chr4_2:58350965-58350984 None:intergenic 30.0%
!! TTGTGTCGAAGATTTTAATG+TGG - chr4_2:58350966-58350985 None:intergenic 30.0%
! TGAAAGGAGATTTAGTTTCA+CGG - chr4_2:58351371-58351390 None:intergenic 30.0%
TGAAACTAAATCTCCTTTCA+TGG + chr4_2:58351371-58351390 Msa0610540:CDS 30.0%
!! TACGCTTTGTTTAAACCAAA+CGG + chr4_2:58351447-58351466 Msa0610540:CDS 30.0%
AAGCATGTTAATTCTTGGAA+AGG + chr4_2:58351672-58351691 Msa0610540:CDS 30.0%
TAAGTCTCAAAGGTTCTATT+AGG - chr4_2:58351711-58351730 None:intergenic 30.0%
TGAGAAAATGTAAGTCTCAA+AGG - chr4_2:58351721-58351740 None:intergenic 30.0%
TTTAACCCAAAAACATCAAC+AGG + chr4_2:58351830-58351849 Msa0610540:CDS 30.0%
! TGTACTAATTTGTCACGTAA+AGG - chr4_2:58351979-58351998 None:intergenic 30.0%
AAATTCCAGACAAAACATAG+GGG - chr4_2:58352032-58352051 None:intergenic 30.0%
CAAATTCCAGACAAAACATA+GGG - chr4_2:58352033-58352052 None:intergenic 30.0%
!! TTTGTCTGGAATTTGCATTT+TGG + chr4_2:58352038-58352057 Msa0610540:intron 30.0%
!! TTGTCTGGAATTTGCATTTT+GGG + chr4_2:58352039-58352058 Msa0610540:intron 30.0%
GACTTGAAGGAATAGTAATA+TGG + chr4_2:58352151-58352170 Msa0610540:intron 30.0%
TGTAATTGTAATGTAACCAC+AGG + chr4_2:58352462-58352481 Msa0610540:intron 30.0%
GGATTTAATCATATGGTTGA+TGG - chr4_2:58352877-58352896 None:intergenic 30.0%
TTTGGCTGTATAAAGAACTA+TGG - chr4_2:58353156-58353175 None:intergenic 30.0%
GTTCAGACAACTAACATATT+TGG - chr4_2:58353174-58353193 None:intergenic 30.0%
AAAAATTTACTTCCTGTGTC+AGG - chr4_2:58353378-58353397 None:intergenic 30.0%
! CAATTTTGTCATAGTGAGAA+TGG + chr4_2:58353585-58353604 Msa0610540:intron 30.0%
ACTATGACATCACAAAAATG+AGG - chr4_2:58353677-58353696 None:intergenic 30.0%
TAGTTCAATTTCAAGCCAAA+TGG + chr4_2:58353767-58353786 Msa0610540:intron 30.0%
GAGAGAATCATATGAGATTT+AGG + chr4_2:58353872-58353891 Msa0610540:intron 30.0%
!! ATTTTGTCCCCATTTTTGTT+TGG + chr4_2:58353907-58353926 Msa0610540:intron 30.0%
!! TTTTGTCCCCATTTTTGTTT+GGG + chr4_2:58353908-58353927 Msa0610540:intron 30.0%
AAGTAACCCAAACAAAAATG+GGG - chr4_2:58353917-58353936 None:intergenic 30.0%
GAAAGTAACCCAAACAAAAA+TGG - chr4_2:58353919-58353938 None:intergenic 30.0%
!! TGTTTGGGTTACTTTCATTT+TGG + chr4_2:58353923-58353942 Msa0610540:intron 30.0%
TACAAATACAAAATAGTCCC+TGG - chr4_2:58354012-58354031 None:intergenic 30.0%
AATCATTTCACGTGTATGTT+TGG + chr4_2:58354320-58354339 Msa0610540:intron 30.0%
TCAACTAAAATCAATTCTGG+AGG - chr4_2:58354398-58354417 None:intergenic 30.0%
GCTTCAACTAAAATCAATTC+TGG - chr4_2:58354401-58354420 None:intergenic 30.0%
AAAATAAAAACAGGTCCTAC+CGG - chr4_2:58354704-58354723 None:intergenic 30.0%
TTGGTGAATCAAAAAATTGC+AGG - chr4_2:58354733-58354752 None:intergenic 30.0%
TTGATTCACCAAGAAAATGA+AGG + chr4_2:58354741-58354760 Msa0610540:intron 30.0%
!! ACAACTATTGTATTGATTGC+TGG + chr4_2:58354846-58354865 Msa0610540:intron 30.0%
!! CAACTATTGTATTGATTGCT+GGG + chr4_2:58354847-58354866 Msa0610540:intron 30.0%
CGTTAACCATAATCTTAACT+AGG - chr4_2:58355095-58355114 None:intergenic 30.0%
AAAATACAAATACCCTTCCT+AGG - chr4_2:58355170-58355189 None:intergenic 30.0%
CCCTCACTCAAAAATCAAAA+TGG + chr4_2:58350786-58350805 Msa0610540:CDS 35.0%
!!! GCCATTTTGATTTTTGAGTG+AGG - chr4_2:58350790-58350809 None:intergenic 35.0%
!! GATTTTAATGTGGGTGATTG+TGG - chr4_2:58350956-58350975 None:intergenic 35.0%
! ATACGGTTGAAGATGGTTTT+GGG - chr4_2:58351123-58351142 None:intergenic 35.0%
AAATACCGAAAAACGGATAC+GGG - chr4_2:58351401-58351420 None:intergenic 35.0%
GAAATACCGAAAAACGGATA+CGG - chr4_2:58351402-58351421 None:intergenic 35.0%
TCAAATGGATGCGGTTTATT+CGG + chr4_2:58351521-58351540 Msa0610540:CDS 35.0%
! GGATTTGGTTATTGGAGAAA+CGG + chr4_2:58351572-58351591 Msa0610540:CDS 35.0%
! GATTTGGTTATTGGAGAAAC+GGG + chr4_2:58351573-58351592 Msa0610540:CDS 35.0%
AAGGTTCTATTAGGCATCAA+AGG - chr4_2:58351702-58351721 None:intergenic 35.0%
TAATTCTGCTCCGAAATAGT+AGG - chr4_2:58351765-58351784 None:intergenic 35.0%
ACTATTTCGGAGCAGAATTA+CGG + chr4_2:58351765-58351784 Msa0610540:CDS 35.0%
! GAATTACGGGTTGTTTAAAC+CGG + chr4_2:58351779-58351798 Msa0610540:CDS 35.0%
GCAAATTCCAGACAAAACAT+AGG - chr4_2:58352034-58352053 None:intergenic 35.0%
!! TGTCTGGAATTTGCATTTTG+GGG + chr4_2:58352040-58352059 Msa0610540:intron 35.0%
TTTAACCAAAAGCTAGCAAG+TGG - chr4_2:58352116-58352135 None:intergenic 35.0%
!! TTGAAAGGCATTTGACTTGA+AGG + chr4_2:58352138-58352157 Msa0610540:intron 35.0%
AAGTGACAGGTTAATGCTTT+GGG - chr4_2:58352177-58352196 None:intergenic 35.0%
AAAGTGACAGGTTAATGCTT+TGG - chr4_2:58352178-58352197 None:intergenic 35.0%
TGAAGGAATAAGAAAGTGAC+AGG - chr4_2:58352190-58352209 None:intergenic 35.0%
TGGTACGTATTCATGAATGA+AGG - chr4_2:58352207-58352226 None:intergenic 35.0%
TCATTCATGAATACGTACCA+AGG + chr4_2:58352207-58352226 Msa0610540:intron 35.0%
TTGCACACGGTATTATTGTT+AGG + chr4_2:58352230-58352249 Msa0610540:intron 35.0%
ACACGGTATTATTGTTAGGT+CGG + chr4_2:58352234-58352253 Msa0610540:intron 35.0%
! TAGGTCGGTATTCATTTTAC+AGG + chr4_2:58352249-58352268 Msa0610540:intron 35.0%
AGTGTGAACTGTGTAAAGTT+TGG + chr4_2:58352398-58352417 Msa0610540:intron 35.0%
TGGTTTACACTTTACAGTGT+TGG + chr4_2:58352418-58352437 Msa0610540:intron 35.0%
!! ACTTTACAGTGTTGGCTAAT+GGG + chr4_2:58352426-58352445 Msa0610540:intron 35.0%
AATCGTCTCCTTCAAAGAAA+TGG + chr4_2:58352563-58352582 Msa0610540:CDS 35.0%
ATAATATGCATTCATGGCGT+AGG - chr4_2:58352725-58352744 None:intergenic 35.0%
CAAAATCACAATCAGAATCG+TGG - chr4_2:58352762-58352781 None:intergenic 35.0%
! CACGATTCTGATTGTGATTT+TGG + chr4_2:58352760-58352779 Msa0610540:CDS 35.0%
CTAACGGAGATACACATTTA+GGG - chr4_2:58353010-58353029 None:intergenic 35.0%
CTAACGGAGATACACATTTA+GGG - chr4_2:58353010-58353029 None:intergenic 35.0%
ACTTGTCTCATGATATTTGG+TGG + chr4_2:58353127-58353146 Msa0610540:intron 35.0%
!! TGATTTGCTCTGATAATCAC+AGG + chr4_2:58353267-58353286 Msa0610540:intron 35.0%
TAACATGTGCAGAAGCTAAT+AGG - chr4_2:58353305-58353324 None:intergenic 35.0%
! TTTTGTGATGTCATAGTCCA+AGG + chr4_2:58353680-58353699 Msa0610540:intron 35.0%
CAATTTCAAGCCAAATGGAA+AGG + chr4_2:58353772-58353791 Msa0610540:intron 35.0%
! AGATGAGGTGACAATTGTTT+TGG - chr4_2:58353980-58353999 None:intergenic 35.0%
TTAAGGGTAAACAGTCACTT+TGG - chr4_2:58354084-58354103 None:intergenic 35.0%
!! AATTTTGGTCTCTCTAGAAG+TGG - chr4_2:58354348-58354367 None:intergenic 35.0%
! TACACCTCGAGAATCAATTT+TGG - chr4_2:58354363-58354382 None:intergenic 35.0%
! AGAAGCACATCACAACAAAA+GGG + chr4_2:58354620-58354639 Msa0610540:intron 35.0%
ATCACAACAAAAGGGTTCTA+TGG + chr4_2:58354628-58354647 Msa0610540:intron 35.0%
AAATAAAAACAGGTCCTACC+GGG - chr4_2:58354703-58354722 None:intergenic 35.0%
ATTCACCAAGAAAATGAAGG+AGG + chr4_2:58354744-58354763 Msa0610540:intron 35.0%
! GTATCAGGCTTTTTGACATT+TGG - chr4_2:58354955-58354974 None:intergenic 35.0%
TATGGTTAACGTATGCGATT+TGG + chr4_2:58355104-58355123 Msa0610540:three_prime_UTR 35.0%
TGAGGAAGGAAAGAAGTAAG+TGG - chr4_2:58350759-58350778 None:intergenic 40.0%
AGAAGTTGGAAGTTGAGAGA+AGG - chr4_2:58350840-58350859 None:intergenic 40.0%
!! TGATTGTGGTTTGGGTTTTG+AGG - chr4_2:58350942-58350961 None:intergenic 40.0%
AATGTGGGTGATTGTGGTTT+GGG - chr4_2:58350950-58350969 None:intergenic 40.0%
TAATGTGGGTGATTGTGGTT+TGG - chr4_2:58350951-58350970 None:intergenic 40.0%
!! GTTGGTGGTTATCCATTGTT+GGG - chr4_2:58351085-58351104 None:intergenic 40.0%
!! TGTTGGTGGTTATCCATTGT+TGG - chr4_2:58351086-58351105 None:intergenic 40.0%
!!! AGATGGTTTTGGGATGGTAA+GGG - chr4_2:58351113-58351132 None:intergenic 40.0%
!!! AAGATGGTTTTGGGATGGTA+AGG - chr4_2:58351114-58351133 None:intergenic 40.0%
! GATACGGTTGAAGATGGTTT+TGG - chr4_2:58351124-58351143 None:intergenic 40.0%
! GGGAAGAATGTGTGCTATTA+AGG - chr4_2:58351184-58351203 None:intergenic 40.0%
TTGATGAAGTGCATTCATGG+CGG - chr4_2:58351205-58351224 None:intergenic 40.0%
AGCTTGATGAAGTGCATTCA+TGG - chr4_2:58351208-58351227 None:intergenic 40.0%
ATCACATCTCCTAACTCACT+CGG + chr4_2:58351258-58351277 Msa0610540:CDS 40.0%
TTTGAGTATGGGAGTGAAGA+TGG - chr4_2:58351343-58351362 None:intergenic 40.0%
TCACGGTGGAATTTGAGTAT+GGG - chr4_2:58351354-58351373 None:intergenic 40.0%
TTCACGGTGGAATTTGAGTA+TGG - chr4_2:58351355-58351374 None:intergenic 40.0%
! AAGGAGATTTAGTTTCACGG+TGG - chr4_2:58351368-58351387 None:intergenic 40.0%
!! GTTAACCCGTATCCGTTTTT+CGG + chr4_2:58351393-58351412 Msa0610540:CDS 40.0%
!! GCTTTGTTTAAACCAAACGG+TGG + chr4_2:58351450-58351469 Msa0610540:CDS 40.0%
TTATCAAAAACGCCACCGTT+TGG - chr4_2:58351465-58351484 None:intergenic 40.0%
! GGCGTTTTTGATAAAGCTAC+TGG + chr4_2:58351471-58351490 Msa0610540:CDS 40.0%
CATTTGAGCGTCAAACATGT+TGG - chr4_2:58351508-58351527 None:intergenic 40.0%
CAACATGTTTGACGCTCAAA+TGG + chr4_2:58351506-58351525 Msa0610540:CDS 40.0%
TTATTCGGCGATGAAGAAAG+TGG + chr4_2:58351536-58351555 Msa0610540:CDS 40.0%
TATTCGGCGATGAAGAAAGT+GGG + chr4_2:58351537-58351556 Msa0610540:CDS 40.0%
! TGCATTTTCCAAACTCACAC+CGG - chr4_2:58351628-58351647 None:intergenic 40.0%
CTATTTCGGAGCAGAATTAC+GGG + chr4_2:58351766-58351785 Msa0610540:CDS 40.0%
GTTTAAACCGGATCTTACAC+CGG + chr4_2:58351791-58351810 Msa0610540:CDS 40.0%
TCATAAACCGGTGTAAGATC+CGG - chr4_2:58351801-58351820 None:intergenic 40.0%
!! TTACACCGGTTTATGACGTT+GGG + chr4_2:58351805-58351824 Msa0610540:CDS 40.0%
AAAACCCCAACGTCATAAAC+CGG - chr4_2:58351813-58351832 None:intergenic 40.0%
! ACGGACCTGTTGATGTTTTT+GGG - chr4_2:58351838-58351857 None:intergenic 40.0%
! TACGGACCTGTTGATGTTTT+TGG - chr4_2:58351839-58351858 None:intergenic 40.0%
!! GTCTGGAATTTGCATTTTGG+GGG + chr4_2:58352041-58352060 Msa0610540:intron 40.0%
!! TTGCATTTTGGGGGTTATTG+TGG + chr4_2:58352050-58352069 Msa0610540:intron 40.0%
AATAATACCGTGTGCAACCT+TGG - chr4_2:58352227-58352246 None:intergenic 40.0%
!! CACTTTACAGTGTTGGCTAA+TGG + chr4_2:58352425-58352444 Msa0610540:intron 40.0%
TGTAATGTAACCACAGGCAA+TGG + chr4_2:58352468-58352487 Msa0610540:intron 40.0%
GTAATGTAACCACAGGCAAT+GGG + chr4_2:58352469-58352488 Msa0610540:intron 40.0%
! TTCTTTGAAGGAGACGATTC+CGG - chr4_2:58352562-58352581 None:intergenic 40.0%
TTCTCACTAGCATTCGTCTT+TGG - chr4_2:58352595-58352614 None:intergenic 40.0%
GATTGTGGGCCTATAAAGAA+TGG + chr4_2:58352658-58352677 Msa0610540:CDS 40.0%
AGTGAATCGGGCTTATAACA+CGG - chr4_2:58352688-58352707 None:intergenic 40.0%
! GATTGTGATTTTGGACACAC+TGG + chr4_2:58352769-58352788 Msa0610540:CDS 40.0%
GCTAACGGAGATACACATTT+AGG - chr4_2:58353011-58353030 None:intergenic 40.0%
GCTAACGGAGATACACATTT+AGG - chr4_2:58353011-58353030 None:intergenic 40.0%
TGTCAGGTGTGTAATCATAC+AGG - chr4_2:58353362-58353381 None:intergenic 40.0%
TATGATTACACACCTGACAC+AGG + chr4_2:58353363-58353382 Msa0610540:intron 40.0%
GCATTTCTGTTATTGCACCT+TGG - chr4_2:58353700-58353719 None:intergenic 40.0%
AGGATGAATGATGTGGCATA+GGG - chr4_2:58353950-58353969 None:intergenic 40.0%
AAGGATGAATGATGTGGCAT+AGG - chr4_2:58353951-58353970 None:intergenic 40.0%
!!! ACAATTGTTTTGGACTGGCA+AGG - chr4_2:58353970-58353989 None:intergenic 40.0%
!!! AGGTGACAATTGTTTTGGAC+TGG - chr4_2:58353975-58353994 None:intergenic 40.0%
! GAGACCAAAATTGATTCTCG+AGG + chr4_2:58354356-58354375 Msa0610540:intron 40.0%
! GAGAAGCACATCACAACAAA+AGG + chr4_2:58354619-58354638 Msa0610540:intron 40.0%
AAAAGGGTTCTATGGTGTAG+TGG + chr4_2:58354636-58354655 Msa0610540:intron 40.0%
CATATGCAGCTACAAGTTCA+GGG + chr4_2:58354929-58354948 Msa0610540:CDS 40.0%
GTCAAAAAGCCTGATACAGA+TGG + chr4_2:58354958-58354977 Msa0610540:CDS 40.0%
AAAAAGCCTGATACAGATGG+TGG + chr4_2:58354961-58354980 Msa0610540:CDS 40.0%
GCATCAATTTGACCTAGGAA+GGG + chr4_2:58355155-58355174 Msa0610540:three_prime_UTR 40.0%
TACAACATCGGCGTCAACTA+CGG + chr4_2:58350871-58350890 Msa0610540:CDS 45.0%
!!! TGTGGTTTGGGTTTTGAGGA+AGG - chr4_2:58350938-58350957 None:intergenic 45.0%
! TTTTGTGAGGGAAGGGATGT+CGG - chr4_2:58351052-58351071 None:intergenic 45.0%
!!! GGTTGAAGATGGTTTTGGGA+TGG - chr4_2:58351119-58351138 None:intergenic 45.0%
!! AGGTTTTGTCTGAAGTTGCG+AGG - chr4_2:58351164-58351183 None:intergenic 45.0%
TGATGAAGTGCATTCATGGC+GGG - chr4_2:58351204-58351223 None:intergenic 45.0%
! GGATACGGGTTAACCATGAA+AGG - chr4_2:58351387-58351406 None:intergenic 45.0%
AAAGCGTAGTTAAGTGCGTC+GGG - chr4_2:58351435-58351454 None:intergenic 45.0%
CAAAGCGTAGTTAAGTGCGT+CGG - chr4_2:58351436-58351455 None:intergenic 45.0%
GTTTGACGCTCAAATGGATG+CGG + chr4_2:58351512-58351531 Msa0610540:CDS 45.0%
!! GCGATGAAGAAAGTGGGTTA+TGG + chr4_2:58351543-58351562 Msa0610540:CDS 45.0%
! GGTGACGTGGATTTGGTTAT+TGG + chr4_2:58351564-58351583 Msa0610540:CDS 45.0%
TGGTTATTGGAGAAACGGGT+TGG + chr4_2:58351577-58351596 Msa0610540:CDS 45.0%
! GCATTTTCCAAACTCACACC+GGG - chr4_2:58351627-58351646 None:intergenic 45.0%
!! CTTACACCGGTTTATGACGT+TGG + chr4_2:58351804-58351823 Msa0610540:CDS 45.0%
!! TACACCGGTTTATGACGTTG+GGG + chr4_2:58351806-58351825 Msa0610540:CDS 45.0%
TCGAACGAAACGGTCACAAA+AGG - chr4_2:58351929-58351948 None:intergenic 45.0%
CGCATATGCATCGAACGAAA+CGG - chr4_2:58351939-58351958 None:intergenic 45.0%
! CTATGCCCCTATGTTTTGTC+TGG + chr4_2:58352024-58352043 Msa0610540:intron 45.0%
ACAGGACACAGTCATTCACA+TGG - chr4_2:58352084-58352103 None:intergenic 45.0%
ATACGTACCAAGGTTGCACA+CGG + chr4_2:58352217-58352236 Msa0610540:intron 45.0%
ATTGACTATGTGTGCAGCCA+TGG + chr4_2:58352631-58352650 Msa0610540:CDS 45.0%
TTGACTATGTGTGCAGCCAT+GGG + chr4_2:58352632-58352651 Msa0610540:CDS 45.0%
TGTGGGCCTATAAAGAATGG+TGG + chr4_2:58352661-58352680 Msa0610540:CDS 45.0%
GTGGGCCTATAAAGAATGGT+GGG + chr4_2:58352662-58352681 Msa0610540:CDS 45.0%
GTTATAAGCCCGATTCACTG+AGG + chr4_2:58352689-58352708 Msa0610540:CDS 45.0%
TGAGTCAAGGACCATTGTGA+CGG - chr4_2:58352968-58352987 None:intergenic 45.0%
AGCCAAATGGAAAGGTTGAC+AGG + chr4_2:58353780-58353799 Msa0610540:intron 45.0%
GCCAAATGGAAAGGTTGACA+GGG + chr4_2:58353781-58353800 Msa0610540:intron 45.0%
ACCCTGTCAACCTTTCCATT+TGG - chr4_2:58353785-58353804 None:intergenic 45.0%
ACTGGCAAGGATGAATGATG+TGG - chr4_2:58353957-58353976 None:intergenic 45.0%
ACCTCATCTGTTTCACATCC+AGG + chr4_2:58353991-58354010 Msa0610540:intron 45.0%
CCTCATCTGTTTCACATCCA+GGG + chr4_2:58353992-58354011 Msa0610540:intron 45.0%
! GTGTGCCTCCTTCATTTTCT+TGG - chr4_2:58354752-58354771 None:intergenic 45.0%
CCTGAACTTGTAGCTGCATA+TGG - chr4_2:58354931-58354950 None:intergenic 45.0%
CCATATGCAGCTACAAGTTC+AGG + chr4_2:58354928-58354947 Msa0610540:CDS 45.0%
CTAGGTCAAATTGATGCGAG+AGG - chr4_2:58355152-58355171 None:intergenic 45.0%
CTCTCGCATCAATTTGACCT+AGG + chr4_2:58355150-58355169 Msa0610540:three_prime_UTR 45.0%
CGCATCAATTTGACCTAGGA+AGG + chr4_2:58355154-58355173 Msa0610540:three_prime_UTR 45.0%
TTGAGTGAGGGGTGAGATTG+AGG - chr4_2:58350777-58350796 None:intergenic 50.0%
GTAGTTGACGCCGATGTTGT+AGG - chr4_2:58350872-58350891 None:intergenic 50.0%
!!! GGTTTGGGTTTTGAGGAAGG+TGG - chr4_2:58350935-58350954 None:intergenic 50.0%
!! AGGGGAGTTTTGTGAGGGAA+GGG - chr4_2:58351059-58351078 None:intergenic 50.0%
TTATCCATTGTTGGGCGGAG+GGG - chr4_2:58351077-58351096 None:intergenic 50.0%
GTTATCCATTGTTGGGCGGA+GGG - chr4_2:58351078-58351097 None:intergenic 50.0%
GGTGGTTATCCATTGTTGGG+CGG - chr4_2:58351082-58351101 None:intergenic 50.0%
ATGGTAAGGGAGGATGTTGG+TGG - chr4_2:58351100-58351119 None:intergenic 50.0%
!!! TGGTTTTGGGATGGTAAGGG+AGG - chr4_2:58351110-58351129 None:intergenic 50.0%
ATCTTCAACCGTATCGCCGT+CGG + chr4_2:58351129-58351148 Msa0610540:CDS 50.0%
TTTCGTTACCGACGGCGATA+CGG - chr4_2:58351140-58351159 None:intergenic 50.0%
TGCGAGGATTTCGTTACCGA+CGG - chr4_2:58351148-58351167 None:intergenic 50.0%
GAGAGAATGCCGAGTGAGTT+AGG - chr4_2:58351270-58351289 None:intergenic 50.0%
! AGATGGTAACGTCGTAGCCA+CGG - chr4_2:58351326-58351345 None:intergenic 50.0%
!! GAAAGTGGGTTATGGTGACG+TGG + chr4_2:58351551-58351570 Msa0610540:CDS 50.0%
! GGGTTATGGTGACGTGGATT+TGG + chr4_2:58351557-58351576 Msa0610540:CDS 50.0%
!! AGAAACGGGTTGGCCTTCTT+TGG + chr4_2:58351587-58351606 Msa0610540:CDS 50.0%
!! GAAACGGGTTGGCCTTCTTT+GGG + chr4_2:58351588-58351607 Msa0610540:CDS 50.0%
CCAAAAGCTAGCAAGTGGCA+AGG - chr4_2:58352111-58352130 None:intergenic 50.0%
!!! CCTTGCCACTTGCTAGCTTT+TGG + chr4_2:58352108-58352127 Msa0610540:intron 50.0%
GGCACGCACCATTTCTTTGA+AGG - chr4_2:58352574-58352593 None:intergenic 50.0%
!! TGCTAGTGAGAAAGCGTTGC+AGG + chr4_2:58352603-58352622 Msa0610540:CDS 50.0%
TGCAGCCATGGGATAGATTG+TGG + chr4_2:58352643-58352662 Msa0610540:CDS 50.0%
GCAGCCATGGGATAGATTGT+GGG + chr4_2:58352644-58352663 Msa0610540:CDS 50.0%
TAGGCCCACAATCTATCCCA+TGG - chr4_2:58352651-58352670 None:intergenic 50.0%
CACGGCCCACCATTCTTTAT+AGG - chr4_2:58352670-58352689 None:intergenic 50.0%
CCCTGGATGTGAAACAGATG+AGG - chr4_2:58353995-58354014 None:intergenic 50.0%
CATACACCTCGCTGTCACAA+TGG - chr4_2:58354054-58354073 None:intergenic 50.0%
TGACAGCGAGGTGTATGTCA+AGG + chr4_2:58354057-58354076 Msa0610540:intron 50.0%
TGGTGTAGTGGTTAGCACTC+TGG + chr4_2:58354648-58354667 Msa0610540:intron 50.0%
GACTTTGAATCCAGCGACCT+GGG + chr4_2:58354670-58354689 Msa0610540:intron 50.0%
AGAATATGGGTGCCTGTTGC+AGG + chr4_2:58354886-58354905 Msa0610540:intron 50.0%
CATGTCTCAGAACCTGCAAC+AGG - chr4_2:58354901-58354920 None:intergenic 50.0%
AGTGAGCCACCATCTGTATC+AGG - chr4_2:58354970-58354989 None:intergenic 50.0%
GTGAGGGGTGAGATTGAGGA+AGG - chr4_2:58350773-58350792 None:intergenic 55.0%
TCCTCCGCCACCTACAACAT+CGG + chr4_2:58350859-58350878 Msa0610540:CDS 55.0%
GTTGACGCCGATGTTGTAGG+TGG - chr4_2:58350869-58350888 None:intergenic 55.0%
!!! GGTTTTGAGGAAGGTGGCGA+CGG - chr4_2:58350929-58350948 None:intergenic 55.0%
!! GGAGATGTTGGTGTTGGCGA+AGG - chr4_2:58351007-58351026 None:intergenic 55.0%
!! GGTGACGGAGATGTTGGTGT+TGG - chr4_2:58351013-58351032 None:intergenic 55.0%
!! GGTTACGGTGACGGAGATGT+TGG - chr4_2:58351019-58351038 None:intergenic 55.0%
GTTGGAGACGGTTACGGTGA+CGG - chr4_2:58351028-58351047 None:intergenic 55.0%
!! GAGGGGAGTTTTGTGAGGGA+AGG - chr4_2:58351060-58351079 None:intergenic 55.0%
GGTTATCCATTGTTGGGCGG+AGG - chr4_2:58351079-58351098 None:intergenic 55.0%
GGGATGGTAAGGGAGGATGT+TGG - chr4_2:58351103-58351122 None:intergenic 55.0%
GACGGCGATACGGTTGAAGA+TGG - chr4_2:58351130-58351149 None:intergenic 55.0%
CGTAGTTAAGTGCGTCGGGT+TGG - chr4_2:58351431-58351450 None:intergenic 55.0%
! TTGGCCTTCTTTGGGTGACC+CGG + chr4_2:58351596-58351615 Msa0610540:CDS 55.0%
! AAACTCACACCGGGTTGACC+CGG - chr4_2:58351618-58351637 None:intergenic 55.0%
AGCAAGTGGCAAGGTCAGAC+AGG - chr4_2:58352102-58352121 None:intergenic 55.0%
! ATTGCTGTTGGCCCTGATGC+GGG - chr4_2:58352496-58352515 None:intergenic 55.0%
! CATTGCTGTTGGCCCTGATG+CGG - chr4_2:58352497-58352516 None:intergenic 55.0%
GCATCAGGGCCAACAGCAAT+GGG + chr4_2:58352496-58352515 Msa0610540:CDS 55.0%
! ATTGCTGTTGGCCCTGATGC+GGG - chr4_2:58352496-58352515 None:intergenic 55.0%
! CATTGCTGTTGGCCCTGATG+CGG - chr4_2:58352497-58352516 None:intergenic 55.0%
GCATCAGGGCCAACAGCAAT+GGG + chr4_2:58352496-58352515 Msa0610540:CDS 55.0%
CATCAGGGCCAACAGCAATG+GGG + chr4_2:58352497-58352516 Msa0610540:CDS 55.0%
TCTGATGGCCCCATTGCTGT+TGG - chr4_2:58352535-58352554 None:intergenic 55.0%
AATGGGGCCATCAGAGTCAC+CGG + chr4_2:58352540-58352559 Msa0610540:CDS 55.0%
GACGATTCCGGTGACTCTGA+TGG - chr4_2:58352550-58352569 None:intergenic 55.0%
GCATGGGACCTCAGTGAATC+GGG - chr4_2:58352700-58352719 None:intergenic 55.0%
CGCATGGGACCTCAGTGAAT+CGG - chr4_2:58352701-58352720 None:intergenic 55.0%
CGATTCACTGAGGTCCCATG+CGG + chr4_2:58352699-58352718 Msa0610540:CDS 55.0%
ATTCATGGCGTAGGCCGCAT+GGG - chr4_2:58352716-58352735 None:intergenic 55.0%
TTTGCACCTCGCCGTCACAA+TGG + chr4_2:58352954-58352973 Msa0610540:intron 55.0%
GGACTTTGAATCCAGCGACC+TGG + chr4_2:58354669-58354688 Msa0610540:intron 55.0%
!! GTAGGTGGCGGAGGAGAAGT+TGG - chr4_2:58350854-58350873 None:intergenic 60.0%
GACGCCGATGTTGTAGGTGG+CGG - chr4_2:58350866-58350885 None:intergenic 60.0%
!! TGTGGGTGGTGGGAGGTTGT+CGG - chr4_2:58350905-58350924 None:intergenic 60.0%
AGGAAGGTGGCGACGGTTGT+GGG - chr4_2:58350922-58350941 None:intergenic 60.0%
!! TGTTGGTGTTGGCGAAGGCG+CGG - chr4_2:58351002-58351021 None:intergenic 60.0%
! GTCGGCGTTGGAGACGGTTA+CGG - chr4_2:58351034-58351053 None:intergenic 60.0%
! AGGGATGTCGGCGTTGGAGA+CGG - chr4_2:58351040-58351059 None:intergenic 60.0%
!! GGCGGAGGGGAGTTTTGTGA+GGG - chr4_2:58351064-58351083 None:intergenic 60.0%
AACTCCCCTCCGCCCAACAA+TGG + chr4_2:58351070-58351089 Msa0610540:CDS 60.0%
! TGGTAACGTCGTAGCCACGG+CGG - chr4_2:58351323-58351342 None:intergenic 60.0%
TGGCCTTCTTTGGGTGACCC+GGG + chr4_2:58351597-58351616 Msa0610540:CDS 60.0%
TGACCCGGGTCACCCAAAGA+AGG - chr4_2:58351603-58351622 None:intergenic 60.0%
! AACTCACACCGGGTTGACCC+GGG - chr4_2:58351617-58351636 None:intergenic 60.0%
GGGTCAACCCGGTGTGAGTT+TGG + chr4_2:58351617-58351636 Msa0610540:CDS 60.0%
AGGCAATGGGACCCGCATCA+GGG + chr4_2:58352482-58352501 Msa0610540:intron 60.0%
CGCATCAGGGCCAACAGCAA+TGG + chr4_2:58352495-58352514 Msa0610540:CDS 60.0%
GATGCGGGTCCCATTGCTGT+TGG - chr4_2:58352508-58352527 None:intergenic 60.0%
ACAGCAATGGGACCCGCATC+AGG + chr4_2:58352508-58352527 Msa0610540:CDS 60.0%
CAGCAATGGGACCCGCATCA+GGG + chr4_2:58352509-58352528 Msa0610540:CDS 60.0%
CGCATCAGGGCCAACAGCAA+TGG + chr4_2:58352495-58352514 Msa0610540:CDS 60.0%
CATTCATGGCGTAGGCCGCA+TGG - chr4_2:58352717-58352736 None:intergenic 60.0%
TGACGGCGAGGTGCAAAGTC+AGG - chr4_2:58352951-58352970 None:intergenic 60.0%
CAAGGACCATTGTGACGGCG+AGG - chr4_2:58352963-58352982 None:intergenic 60.0%
CAGGGACCATTGTGACAGCG+AGG + chr4_2:58354045-58354064 Msa0610540:intron 60.0%
AGCGACCTGGGTTTGACTCC+CGG + chr4_2:58354682-58354701 Msa0610540:intron 60.0%
ACCTGGGTTTGACTCCCGGT+AGG + chr4_2:58354686-58354705 Msa0610540:intron 60.0%
TCCTACCGGGAGTCAAACCC+AGG - chr4_2:58354690-58354709 None:intergenic 60.0%
! GCCGATGTTGTAGGTGGCGG+AGG - chr4_2:58350863-58350882 None:intergenic 65.0%
TGGTGGGAGGTTGTCGGCGA+TGG - chr4_2:58350899-58350918 None:intergenic 65.0%
TGGCGACGGTTGTGGGTGGT+GGG - chr4_2:58350915-58350934 None:intergenic 65.0%
AAGGTGGCGACGGTTGTGGG+TGG - chr4_2:58350919-58350938 None:intergenic 65.0%
GAGGAAGGTGGCGACGGTTG+TGG - chr4_2:58350923-58350942 None:intergenic 65.0%
GAGGGAAGGGATGTCGGCGT+TGG - chr4_2:58351046-58351065 None:intergenic 65.0%
!! GGGCGGAGGGGAGTTTTGTG+AGG - chr4_2:58351065-58351084 None:intergenic 65.0%
GTCGTAGCCACGGCGGAAAG+CGG - chr4_2:58351316-58351335 None:intergenic 65.0%
TTGGGTGACCCGGGTCAACC+CGG + chr4_2:58351606-58351625 Msa0610540:CDS 65.0%
GATGCGGGTCCCATTGCCTG+TGG - chr4_2:58352481-58352500 None:intergenic 65.0%
CAGGCAATGGGACCCGCATC+AGG + chr4_2:58352481-58352500 Msa0610540:intron 65.0%
GGGAGTCAAACCCAGGTCGC+TGG - chr4_2:58354683-58354702 None:intergenic 65.0%
!! CGACGGTTGTGGGTGGTGGG+AGG - chr4_2:58350912-58350931 None:intergenic 70.0%
GTGGCGACGGTTGTGGGTGG+TGG - chr4_2:58350916-58350935 None:intergenic 70.0%
! GTTGGCGAAGGCGCGGAGGA+TGG - chr4_2:58350995-58351014 None:intergenic 70.0%
!! TGGTGTTGGCGAAGGCGCGG+AGG - chr4_2:58350999-58351018 None:intergenic 70.0%
GTAGCCACGGCGGAAAGCGG+CGG - chr4_2:58351313-58351332 None:intergenic 70.0%
AGCGGCGGAGCTGGGTGGTG+AGG - chr4_2:58351298-58351317 None:intergenic 75.0%
CGGAAAGCGGCGGAGCTGGG+TGG - chr4_2:58351303-58351322 None:intergenic 75.0%
CGGCGGAAAGCGGCGGAGCT+GGG - chr4_2:58351306-58351325 None:intergenic 75.0%
ACGGCGGAAAGCGGCGGAGC+TGG - chr4_2:58351307-58351326 None:intergenic 75.0%
! AGCTCCGCCGCTTTCCGCCG+TGG + chr4_2:58351306-58351325 Msa0610540:CDS 75.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 58350754 58355242 58350754 ID=Msa0610540;Name=Msa0610540
chr4_2 mRNA 58350754 58355242 58350754 ID=Msa0610540-mRNA-1;Parent=Msa0610540;Name=Msa0610540-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|1|0.33|1|0.5|0.66|3|174|529
chr4_2 exon 58350754 58351851 58350754 ID=Msa0610540-mRNA-1:exon:15284;Parent=Msa0610540-mRNA-1
chr4_2 exon 58352484 58352814 58352484 ID=Msa0610540-mRNA-1:exon:15285;Parent=Msa0610540-mRNA-1
chr4_2 exon 58354908 58355242 58354908 ID=Msa0610540-mRNA-1:exon:15286;Parent=Msa0610540-mRNA-1
chr4_2 CDS 58350754 58351851 58350754 ID=Msa0610540-mRNA-1:cds;Parent=Msa0610540-mRNA-1
chr4_2 CDS 58352484 58352814 58352484 ID=Msa0610540-mRNA-1:cds;Parent=Msa0610540-mRNA-1
chr4_2 CDS 58354908 58355068 58354908 ID=Msa0610540-mRNA-1:cds;Parent=Msa0610540-mRNA-1
chr4_2 three_prime_UTR 58355069 58355242 58355069 ID=Msa0610540-mRNA-1:three_prime_utr;Parent=Msa0610540-mRNA-1
Gene Sequence

>Msa0610540

TTCCACTTACTTCTTTCCTTCCTCAATCTCACCCCTCACTCAAAAATCAAAATGGCAGTTCCTTTTCACTTACTTCTTCTTCTCCTTCTCTCAACTTCCAACTTCTCCTCCGCCACCTACAACATCGGCGTCAACTACGGCACCATCGCCGACAACCTCCCACCACCCACAACCGTCGCCACCTTCCTCAAAACCCAAACCACAATCACCCACATTAAAATCTTCGACACAAACTCTTCCATCCTCCGCGCCTTCGCCAACACCAACATCTCCGTCACCGTAACCGTCTCCAACGCCGACATCCCTTCCCTCACAAAACTCCCCTCCGCCCAACAATGGATAACCACCAACATCCTCCCTTACCATCCCAAAACCATCTTCAACCGTATCGCCGTCGGTAACGAAATCCTCGCAACTTCAGACAAAACCTTAATAGCACACATTCTTCCCGCCATGAATGCACTTCATCAAGCTCTCACTCTTTCAAATCTCACTCACATTCAAATCACATCTCCTAACTCACTCGGCATTCTCTCTTCATCCTCACCACCCAGCTCCGCCGCTTTCCGCCGTGGCTACGACGTTACCATCTTCACTCCCATACTCAAATTCCACCGTGAAACTAAATCTCCTTTCATGGTTAACCCGTATCCGTTTTTCGGTATTTCATCAAACCAACCCGACGCACTTAACTACGCTTTGTTTAAACCAAACGGTGGCGTTTTTGATAAAGCTACTGGAATAAACTACACCAACATGTTTGACGCTCAAATGGATGCGGTTTATTCGGCGATGAAGAAAGTGGGTTATGGTGACGTGGATTTGGTTATTGGAGAAACGGGTTGGCCTTCTTTGGGTGACCCGGGTCAACCCGGTGTGAGTTTGGAAAATGCAGTTTCTTATAATGGGAATCTTATTAAGCATGTTAATTCTTGGAAAGGAACTCCTTTGATGCCTAATAGAACCTTTGAGACTTACATTTTCTCATTGTTTAATGAGAATCTTAAACCTACTATTTCGGAGCAGAATTACGGGTTGTTTAAACCGGATCTTACACCGGTTTATGACGTTGGGGTTTTAACCCAAAAACATCAACAGGCAATGGGACCCGCATCAGGGCCAACAGCAATGGGACCCGCATCAGGGCCAACAGCAATGGGGCCATCAGAGTCACCGGAATCGTCTCCTTCAAAGAAATGGTGCGTGCCAAAGACGAATGCTAGTGAGAAAGCGTTGCAGGCAAACATTGACTATGTGTGCAGCCATGGGATAGATTGTGGGCCTATAAAGAATGGTGGGCCGTGTTATAAGCCCGATTCACTGAGGTCCCATGCGGCCTACGCCATGAATGCATATTATCAGAAATCTGGTCACCACGATTCTGATTGTGATTTTGGACACACTGGAGTCATTACTTACACAGACCCTAGTTCTGAGACATGTAAGTTTCCATATGCAGCTACAAGTTCAGGGCCAAATGTCAAAAAGCCTGATACAGATGGTGGCTCACTCAAATCTGCCACTTCCAAACTTAGATTATATCACTTCTTATTTTATCTTCAATTTCTTATTTTTCTCTGTTTTCTTTAA
Protein sequence

>Msa0610540

FHLLLSFLNLTPHSKIKMAVPFHLLLLLLLSTSNFSSATYNIGVNYGTIADNLPPPTTVATFLKTQTTITHIKIFDTNSSILRAFANTNISVTVTVSNADIPSLTKLPSAQQWITTNILPYHPKTIFNRIAVGNEILATSDKTLIAHILPAMNALHQALTLSNLTHIQITSPNSLGILSSSSPPSSAAFRRGYDVTIFTPILKFHRETKSPFMVNPYPFFGISSNQPDALNYALFKPNGGVFDKATGINYTNMFDAQMDAVYSAMKKVGYGDVDLVIGETGWPSLGDPGQPGVSLENAVSYNGNLIKHVNSWKGTPLMPNRTFETYIFSLFNENLKPTISEQNYGLFKPDLTPVYDVGVLTQKHQQAMGPASGPTAMGPASGPTAMGPSESPESSPSKKWCVPKTNASEKALQANIDYVCSHGIDCGPIKNGGPCYKPDSLRSHAAYAMNAYYQKSGHHDSDCDFGHTGVITYTDPSSETCKFPYAATSSGPNVKKPDTDGGSLKSATSKLRLYHFLFYLQFLIFLCFL*