AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0651060

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0651060 MtrunA17_Chr4g0043511 95.985 523 10 2 1 523 38 549 0.0 1022
Msa0651060 MtrunA17_Chr7g0223961 51.327 452 193 6 27 477 23 448 6.17e-164 472
Msa0651060 MtrunA17_Chr4g0034901 42.620 481 246 10 7 482 9 464 2.56e-134 397
Msa0651060 MtrunA17_Chr1g0146831 57.057 333 137 4 11 341 16 344 3.34e-132 389
Msa0651060 MtrunA17_Chr3g0144531 42.029 483 247 9 4 482 6 459 6.35e-131 389
Msa0651060 MtrunA17_Chr5g0439251 40.355 451 250 8 26 471 24 460 1.86e-109 334
Msa0651060 MtrunA17_Chr1g0177171 40.998 461 256 12 27 478 38 491 2.96e-109 334
Msa0651060 MtrunA17_Chr6g0487261 37.605 476 256 12 8 477 14 454 8.01e-103 318
Msa0651060 MtrunA17_Chr8g0389741 38.596 456 244 10 27 477 28 452 1.88e-102 317
Msa0651060 MtrunA17_Chr1g0155001 44.037 327 176 6 27 348 24 348 1.55e-94 293
Msa0651060 MtrunA17_Chr7g0234821 36.681 458 258 9 28 478 27 459 4.99e-94 294
Msa0651060 MtrunA17_Chr3g0110371 35.946 523 286 15 5 518 3 485 1.96e-92 290
Msa0651060 MtrunA17_Chr8g0339191 33.610 482 281 11 8 478 6 459 1.08e-90 285
Msa0651060 MtrunA17_Chr1g0161011 36.049 491 267 13 8 489 5 457 1.40e-90 286
Msa0651060 MtrunA17_Chr4g0075031 34.969 489 271 12 27 507 45 494 4.95e-90 285
Msa0651060 MtrunA17_Chr1g0189111 46.201 329 171 6 18 343 22 347 1.11e-88 278
Msa0651060 MtrunA17_Chr8g0378621 35.760 467 256 12 27 485 26 456 1.45e-88 281
Msa0651060 MtrunA17_Chr2g0321511 40.443 361 206 7 1 356 1 357 3.44e-86 271
Msa0651060 MtrunA17_Chr4g0043851 42.693 349 189 8 1 344 8 350 1.57e-85 270
Msa0651060 MtrunA17_Chr3g0121271 34.227 485 272 11 1 477 1 446 1.83e-85 273
Msa0651060 MtrunA17_Chr5g0434591 34.908 487 266 14 1 478 1 445 1.32e-84 270
Msa0651060 MtrunA17_Chr3g0119541 45.000 320 170 6 27 342 26 343 5.56e-84 265
Msa0651060 MtrunA17_Chr4g0026321 42.188 320 180 5 28 344 30 347 2.23e-83 263
Msa0651060 MtrunA17_Chr4g0046311 33.474 475 281 9 6 471 3 451 2.27e-83 266
Msa0651060 MtrunA17_Chr2g0285901 40.653 337 194 5 11 344 8 341 1.87e-82 261
Msa0651060 MtrunA17_Chr4g0003281 39.943 348 195 9 5 343 16 358 2.97e-76 246
Msa0651060 MtrunA17_Chr7g0250301 40.810 321 179 7 22 340 3 314 6.82e-72 231
Msa0651060 MtrunA17_Chr4g0064021 38.438 320 191 6 28 343 27 344 5.04e-70 229
Msa0651060 MtrunA17_Chr4g0062771 30.864 486 285 18 6 478 10 457 6.74e-62 211
Msa0651060 MtrunA17_Chr3g0138741 32.449 490 269 19 2 477 13 454 2.48e-59 204
Msa0651060 MtrunA17_Chr4g0039021 39.583 288 160 8 51 334 4 281 2.65e-57 192
Msa0651060 MtrunA17_Chr4g0039071 37.195 328 183 11 27 345 25 338 8.45e-57 194
Msa0651060 MtrunA17_Chr4g0038941 36.677 319 184 10 27 342 52 355 1.10e-55 190
Msa0651060 MtrunA17_Chr2g0306311 29.014 517 288 20 6 483 11 487 2.27e-55 194
Msa0651060 MtrunA17_Chr1g0174261 39.865 296 164 10 57 347 1 287 3.29e-55 189
Msa0651060 MtrunA17_Chr4g0038961 34.412 340 203 11 7 342 3 326 2.40e-54 186
Msa0651060 MtrunA17_Chr7g0253091 28.454 485 293 16 7 477 6 450 3.28e-54 190
Msa0651060 MtrunA17_Chr2g0290821 29.724 471 283 16 27 487 28 460 5.17e-54 189
Msa0651060 MtrunA17_Chr1g0148391 30.595 487 280 20 5 477 6 448 5.65e-54 189
Msa0651060 MtrunA17_Chr4g0039011 34.169 319 193 9 27 342 42 346 2.01e-53 184
Msa0651060 MtrunA17_Chr2g0294601 34.957 349 210 12 9 351 41 378 2.43e-53 185
Msa0651060 MtrunA17_Chr4g0038971 33.628 339 207 10 7 342 3 326 4.97e-53 182
Msa0651060 MtrunA17_Chr4g0038981 33.531 337 206 10 7 340 3 324 1.09e-52 181
Msa0651060 MtrunA17_Chr6g0461601 29.399 466 276 16 27 477 26 453 4.86e-52 184
Msa0651060 MtrunA17_Chr7g0250321 37.979 287 167 7 8 292 9 286 9.22e-51 175
Msa0651060 MtrunA17_Chr3g0129341 28.629 496 292 19 7 484 11 462 5.56e-50 178
Msa0651060 MtrunA17_Chr4g0076581 30.579 484 278 19 27 497 33 471 8.63e-50 178
Msa0651060 MtrunA17_Chr8g0383311 28.632 468 289 14 27 485 43 474 1.95e-49 177
Msa0651060 MtrunA17_Chr2g0294591 34.234 333 202 12 17 343 20 341 5.86e-48 170
Msa0651060 MtrunA17_Chr4g0069801 26.899 487 301 18 5 477 6 451 3.15e-45 166
Msa0651060 MtrunA17_Chr3g0105981 28.352 455 268 17 19 460 19 428 1.80e-39 148
Msa0651060 MtrunA17_Chr5g0436361 33.447 293 184 8 54 341 63 349 7.08e-39 145
Msa0651060 MtrunA17_Chr8g0378381 45.455 88 48 0 391 478 29 116 1.83e-24 98.2
Msa0651060 MtrunA17_Chr8g0378401 46.667 90 46 1 391 480 29 116 3.83e-24 97.4
Msa0651060 MtrunA17_Chr1g0154991 46.429 84 45 0 394 477 20 103 6.16e-23 93.6
Msa0651060 MtrunA17_Chr8g0378361 42.424 99 56 1 391 488 27 125 3.30e-22 94.4
Msa0651060 MtrunA17_Chr4g0040911 47.674 86 44 1 394 478 37 122 9.00e-22 92.8
Msa0651060 MtrunA17_Chr5g0443331 42.105 133 68 5 353 484 74 198 1.02e-20 92.0
Msa0651060 MtrunA17_Chr3g0096451 42.500 120 64 4 362 478 79 196 1.05e-20 91.7
Msa0651060 MtrunA17_Chr8g0378371 43.678 87 46 1 392 478 31 114 1.38e-20 87.4
Msa0651060 MtrunA17_Chr8g0381081 43.750 96 51 2 394 486 57 152 2.73e-20 88.6
Msa0651060 MtrunA17_Chr4g0061401 42.529 87 49 1 391 477 21 106 1.62e-19 87.4
Msa0651060 MtrunA17_Chr7g0271411 48.837 86 42 2 394 478 160 244 4.69e-19 87.8
Msa0651060 MtrunA17_Chr4g0043151 40.449 89 52 1 391 478 18 106 4.79e-18 82.4
Msa0651060 MtrunA17_Chr1g0213651 39.535 86 52 0 394 479 276 361 8.10e-18 85.1
Msa0651060 MtrunA17_Chr1g0193131 44.444 81 44 1 392 472 418 497 1.18e-17 86.3
Msa0651060 MtrunA17_Chr2g0304061 42.391 92 52 1 393 484 157 247 2.84e-17 83.2
Msa0651060 MtrunA17_Chr2g0313891 38.372 86 52 1 392 477 28 112 3.41e-17 77.4
Msa0651060 MtrunA17_Chr5g0401301 39.370 127 69 6 359 477 288 414 4.00e-17 83.6
Msa0651060 MtrunA17_Chr5g0419121 39.080 87 51 1 394 478 22 108 1.14e-16 80.1
Msa0651060 MtrunA17_Chr3g0120401 36.905 84 53 0 394 477 157 240 2.61e-16 78.6
Msa0651060 MtrunA17_Chr4g0018861 45.918 98 47 3 249 345 84 176 2.74e-16 78.2
Msa0651060 MtrunA17_Chr4g0018771 42.857 98 50 3 249 345 86 178 4.54e-16 77.4
Msa0651060 MtrunA17_Chr5g0447651 34.483 87 56 1 394 479 30 116 8.08e-15 70.9
Msa0651060 MtrunA17_Chr4g0076131 35.227 88 56 1 393 479 27 114 1.05e-14 70.5
Msa0651060 MtrunA17_Chr4g0076141 37.500 80 49 1 393 471 12 91 1.13e-14 70.1
Msa0651060 MtrunA17_Chr2g0294581 26.570 207 134 8 27 223 76 274 1.68e-13 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0651060 AT5G24318.1 52.766 470 187 7 11 477 18 455 6.98e-169 486
Msa0651060 AT5G24318.2 53.233 464 182 7 11 471 18 449 1.03e-167 482
Msa0651060 AT3G55430.1 48.791 455 195 9 27 477 29 449 3.14e-146 427
Msa0651060 AT3G46570.1 64.832 327 109 4 22 345 22 345 2.81e-145 422
Msa0651060 AT2G16230.1 41.257 509 263 10 21 523 19 497 1.28e-135 402
Msa0651060 AT2G39640.1 42.857 504 248 8 5 507 8 472 3.67e-135 403
Msa0651060 AT2G39640.1 45.745 94 51 0 389 482 455 548 7.94e-24 105
Msa0651060 AT5G24318.4 58.284 338 130 5 11 345 18 347 1.18e-132 390
Msa0651060 AT4G34480.1 43.789 475 230 8 8 478 7 448 7.95e-131 390
Msa0651060 AT5G24318.3 52.035 344 134 6 137 477 1 316 8.19e-121 358
Msa0651060 AT2G05790.1 42.117 463 241 13 26 478 24 469 5.36e-112 341
Msa0651060 AT4G26830.1 40.166 483 253 10 1 478 1 452 1.17e-109 334
Msa0651060 AT4G26830.2 40.481 457 238 9 27 478 29 456 2.08e-107 328
Msa0651060 AT5G55180.1 40.393 458 240 10 27 478 27 457 1.79e-106 326
Msa0651060 AT5G55180.2 40.798 451 234 11 27 471 27 450 2.58e-104 321
Msa0651060 AT4G34480.3 45.777 367 164 6 115 478 3 337 4.12e-102 313
Msa0651060 AT5G42720.1 42.969 384 207 9 9 383 8 388 8.09e-101 311
Msa0651060 AT4G34480.2 46.921 341 175 6 8 344 7 345 3.32e-97 298
Msa0651060 AT4G29360.1 37.103 504 304 11 7 505 8 503 1.99e-96 303
Msa0651060 AT4G29360.2 37.778 495 288 12 5 487 9 495 7.79e-96 301
Msa0651060 AT5G56590.1 35.644 505 278 15 27 523 26 491 3.06e-93 293
Msa0651060 AT2G01630.1 36.481 466 251 11 27 484 23 451 4.74e-93 293
Msa0651060 AT1G32860.1 46.471 340 175 6 9 343 11 348 1.06e-90 284
Msa0651060 AT2G01630.3 36.203 453 244 11 27 471 23 438 3.44e-90 283
Msa0651060 AT1G30080.2 43.824 340 186 5 7 343 16 353 9.28e-90 280
Msa0651060 AT1G30080.1 43.824 340 186 5 7 343 16 353 1.18e-89 281
Msa0651060 AT2G27500.2 43.789 322 175 6 27 344 29 348 5.79e-88 276
Msa0651060 AT1G11820.2 35.435 460 252 12 27 478 44 466 1.46e-87 279
Msa0651060 AT2G27500.1 43.789 322 175 6 27 344 29 348 1.58e-87 275
Msa0651060 AT3G13560.4 35.421 463 245 11 27 477 26 446 1.24e-86 276
Msa0651060 AT3G13560.1 35.421 463 245 11 27 477 26 446 1.24e-86 276
Msa0651060 AT3G13560.2 35.421 463 245 11 27 477 26 446 1.24e-86 276
Msa0651060 AT3G13560.5 35.421 463 245 11 27 477 26 446 1.24e-86 276
Msa0651060 AT3G13560.3 35.421 463 245 11 27 477 26 446 1.24e-86 276
Msa0651060 AT3G23770.1 34.490 461 268 8 27 478 37 472 1.81e-85 272
Msa0651060 AT1G11820.3 35.320 453 248 12 27 471 44 459 2.35e-85 272
Msa0651060 AT4G14080.1 34.279 458 270 7 27 478 42 474 2.69e-85 272
Msa0651060 AT1G66250.1 34.934 458 254 9 27 477 32 452 1.31e-84 271
Msa0651060 AT4G18340.2 41.739 345 195 6 5 346 13 354 4.74e-84 266
Msa0651060 AT4G18340.1 41.813 342 193 6 5 343 13 351 8.44e-84 265
Msa0651060 AT5G42100.2 44.000 325 174 7 26 344 26 348 1.03e-81 261
Msa0651060 AT5G42100.1 44.000 325 174 7 26 344 26 348 1.03e-81 261
Msa0651060 AT3G07320.1 33.188 458 272 8 28 478 26 456 5.40e-80 258
Msa0651060 AT3G15800.1 43.202 331 179 8 28 352 44 371 2.92e-79 254
Msa0651060 AT2G26600.1 41.562 320 181 6 28 343 35 352 2.39e-78 251
Msa0651060 AT2G27500.3 46.850 254 131 4 94 344 18 270 7.60e-72 232
Msa0651060 AT2G01630.2 34.901 404 218 11 27 422 23 389 1.29e-69 228
Msa0651060 AT1G11820.1 37.846 325 192 8 27 344 44 365 1.04e-66 221
Msa0651060 AT2G26600.2 43.651 252 138 4 95 343 8 258 1.66e-63 209
Msa0651060 AT5G20390.1 39.118 340 194 10 7 342 13 343 2.52e-62 208
Msa0651060 AT4G16260.1 37.243 341 197 10 7 342 4 332 1.74e-61 206
Msa0651060 AT3G61810.1 35.522 335 197 8 17 342 45 369 8.34e-61 205
Msa0651060 AT3G24330.1 30.579 484 287 15 7 478 19 465 1.33e-59 205
Msa0651060 AT5G20340.1 37.994 329 187 11 20 342 36 353 2.33e-57 195
Msa0651060 AT4G16260.2 37.821 312 177 10 34 340 2 301 3.80e-57 193
Msa0651060 AT5G58090.1 30.670 463 272 16 27 478 22 446 5.28e-57 197
Msa0651060 AT3G57260.1 33.728 338 209 9 7 342 12 336 1.34e-56 192
Msa0651060 AT3G57260.2 33.728 338 209 9 7 342 28 352 1.85e-56 192
Msa0651060 AT3G57270.1 36.025 322 189 12 27 342 27 337 1.95e-54 187
Msa0651060 AT2G19440.2 30.303 462 275 14 27 478 21 445 4.34e-54 190
Msa0651060 AT2G19440.1 30.303 462 275 14 27 478 21 445 4.34e-54 190
Msa0651060 AT1G64760.1 29.253 482 294 14 7 478 5 449 6.63e-54 189
Msa0651060 AT1G64760.2 29.253 482 294 14 7 478 5 449 6.63e-54 189
Msa0651060 AT5G20330.1 35.735 347 203 12 5 342 9 344 2.61e-53 184
Msa0651060 AT5G64790.1 28.484 488 300 16 13 489 14 463 3.44e-53 187
Msa0651060 AT4G17180.1 30.515 485 285 17 8 485 9 448 4.32e-53 187
Msa0651060 AT4G31140.1 29.004 462 277 17 27 477 27 448 1.55e-52 186
Msa0651060 AT5G18220.1 27.423 485 295 16 10 478 13 456 6.77e-52 184
Msa0651060 AT5G20870.1 28.656 506 300 20 6 491 9 473 2.92e-51 182
Msa0651060 AT5G20560.1 35.608 337 197 10 10 334 8 336 2.30e-50 176
Msa0651060 AT1G77780.1 34.118 340 211 9 7 342 2 332 2.52e-49 174
Msa0651060 AT1G33220.1 35.191 341 200 10 5 342 12 334 3.57e-49 172
Msa0651060 AT3G04010.1 26.349 482 305 14 9 478 15 458 7.03e-48 173
Msa0651060 AT5G58480.1 28.986 483 277 18 27 492 26 459 2.32e-47 171
Msa0651060 AT3G57240.1 34.969 326 194 13 20 342 28 338 5.52e-46 164
Msa0651060 AT1G77790.1 33.138 341 211 10 10 342 10 341 2.92e-43 157
Msa0651060 AT3G55780.1 33.562 292 186 6 54 340 61 349 6.22e-43 157
Msa0651060 AT5G63225.1 49.425 87 44 0 391 477 22 108 1.13e-26 104
Msa0651060 AT4G09090.1 49.438 89 45 0 389 477 26 114 2.93e-25 100
Msa0651060 AT1G18650.1 45.652 92 50 0 391 482 18 109 7.68e-25 102
Msa0651060 AT5G63230.1 45.977 87 47 0 391 477 23 109 8.42e-25 99.4
Msa0651060 AT1G18650.2 46.154 91 49 0 391 481 18 108 1.56e-24 99.4
Msa0651060 AT5G63240.1 47.126 87 43 1 394 477 40 126 1.73e-23 96.3
Msa0651060 AT4G09464.1 43.820 89 50 0 389 477 26 114 3.55e-23 95.1
Msa0651060 AT4G09467.1 43.820 89 50 0 389 477 26 114 3.55e-23 95.1
Msa0651060 AT4G09465.1 43.820 89 50 0 389 477 26 114 4.15e-23 94.7
Msa0651060 AT4G09462.1 43.820 89 50 0 389 477 24 112 4.55e-23 94.7
Msa0651060 AT1G66855.1 45.455 88 47 1 391 477 23 110 1.17e-22 93.6
Msa0651060 AT2G30933.1 39.716 141 71 5 392 519 80 219 7.54e-22 94.7
Msa0651060 AT3G58100.1 38.596 114 64 3 394 504 41 151 1.56e-21 92.4
Msa0651060 AT5G53600.1 43.478 92 51 1 386 477 21 111 2.00e-21 89.7
Msa0651060 AT4G09466.1 41.573 89 52 0 389 477 26 114 2.21e-21 90.1
Msa0651060 AT1G66870.1 43.011 93 52 1 386 477 18 110 2.60e-21 89.7
Msa0651060 AT1G66870.2 43.011 93 52 1 386 477 45 137 3.26e-21 90.1
Msa0651060 AT4G13600.1 36.275 102 65 0 394 495 61 162 5.65e-21 92.4
Msa0651060 AT5G61130.1 45.455 88 48 0 391 478 18 105 5.80e-21 91.7
Msa0651060 AT2G43670.1 46.512 86 45 1 394 479 35 119 6.49e-21 89.0
Msa0651060 AT3G58100.2 38.596 114 64 3 394 504 117 227 6.79e-21 92.8
Msa0651060 AT5G53610.1 43.678 87 48 1 391 477 25 110 8.43e-21 88.2
Msa0651060 AT1G78520.1 43.333 90 50 1 388 477 26 114 8.96e-21 88.2
Msa0651060 AT1G29380.1 47.674 86 43 2 393 477 147 231 1.04e-20 93.6
Msa0651060 AT1G29380.3 47.674 86 43 2 393 477 147 231 1.44e-20 92.0
Msa0651060 AT1G66852.1 43.011 93 51 2 386 477 18 109 1.39e-19 84.7
Msa0651060 AT5G63250.1 42.708 96 52 1 385 477 33 128 1.51e-19 85.1
Msa0651060 AT5G08000.2 44.706 85 47 0 394 478 40 124 3.39e-19 86.7
Msa0651060 AT1G29380.4 48.750 80 39 2 393 471 147 225 3.43e-19 87.0
Msa0651060 AT1G29380.2 48.750 80 39 2 393 471 147 225 3.43e-19 87.0
Msa0651060 AT5G08000.1 44.318 88 49 0 391 478 18 105 3.57e-19 86.3
Msa0651060 AT4G05430.1 37.374 99 61 1 380 477 9 107 2.53e-18 82.0
Msa0651060 AT4G05430.3 37.374 99 61 1 380 477 34 132 4.32e-18 82.4
Msa0651060 AT5G67460.1 39.000 100 54 2 385 477 278 377 7.62e-18 85.9
Msa0651060 AT2G30933.2 46.914 81 41 2 392 471 80 159 1.18e-17 80.9
Msa0651060 AT2G30933.3 46.914 81 41 2 392 471 80 159 1.18e-17 80.9
Msa0651060 AT2G29735.1 38.202 89 53 1 391 477 28 116 2.08e-17 78.6
Msa0651060 AT4G05430.2 38.710 93 56 1 380 471 34 126 3.84e-17 78.2
Msa0651060 AT4G16165.1 40.909 88 51 1 391 477 23 110 3.93e-17 77.8
Msa0651060 AT2G43660.2 42.045 88 50 1 394 480 35 122 4.33e-17 78.2
Msa0651060 AT2G43660.1 42.045 88 50 1 394 480 34 121 4.73e-17 77.8
Msa0651060 AT1G09460.1 43.689 103 53 4 383 484 127 225 7.06e-17 82.4
Msa0651060 AT1G79480.1 37.931 87 54 0 391 477 308 394 7.45e-17 83.2
Msa0651060 AT1G79480.2 37.931 87 54 0 391 477 307 393 7.46e-17 83.2
Msa0651060 AT2G04910.2 36.364 88 55 1 393 479 14 101 3.85e-16 74.7
Msa0651060 AT5G67460.2 39.362 94 50 2 385 471 278 371 9.60e-16 79.3
Msa0651060 AT3G28250.1 40.506 79 46 1 393 471 2 79 2.55e-15 72.8
Msa0651060 AT2G03505.4 36.667 90 55 1 391 478 18 107 4.62e-15 73.6
Msa0651060 AT2G03505.1 36.667 90 55 1 391 478 18 107 4.62e-15 73.6
Msa0651060 AT2G03505.2 36.667 90 55 1 391 478 18 107 4.62e-15 73.6
Msa0651060 AT5G35740.1 34.066 91 58 2 391 479 27 117 6.03e-15 71.6
Msa0651060 AT2G03505.3 37.805 82 51 0 391 472 18 99 1.05e-14 70.9
Msa0651060 AT2G04910.1 35.366 82 52 1 393 473 14 95 5.37e-14 69.3
Msa0651060 AT1G26450.1 43.662 71 39 1 395 465 22 91 3.06e-13 68.9
Msa0651060 AT2G42930.1 37.975 79 48 1 394 472 40 117 7.90e-13 66.2
Msa0651060 AT1G69295.1 37.037 81 50 1 394 474 21 100 1.44e-12 67.8
Msa0651060 AT1G69295.2 37.037 81 50 1 394 474 17 96 2.45e-12 67.0
Msa0651060 AT1G13830.2 35.897 78 50 0 394 471 35 112 7.61e-12 65.5
Msa0651060 AT1G13830.1 35.443 79 51 0 394 472 21 99 8.89e-12 64.7

Find 178 sgRNAs with CRISPR-Local

Find 362 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACGATTCTGATTGTGATTT+TGG 0.055906 4_3:-58334839 Msa0651060:CDS
CTTATTAAGCATGTTAATTC+TGG 0.147932 4_3:-58335960 Msa0651060:CDS
GGTGACGTGGATTTGGTTAT+TGG 0.210206 4_3:-58336062 Msa0651060:CDS
GAAAATGCAGTTTCTTATAA+TGG 0.220914 4_3:-58335987 Msa0651060:CDS
AGAAACGGGTTGGCCTTCTT+TGG 0.250362 4_3:-58336039 Msa0651060:CDS
GGGAAGAATGTGTGCTATTA+AGG 0.258785 4_3:+58336445 None:intergenic
TTCACGGTGGAATTTGAGTA+TGG 0.267203 4_3:+58336274 None:intergenic
GCATCTGAGCCCACGGCAAT+GGG 0.277359 4_3:-58335076 Msa0651060:CDS
GATACGGTTGAAGATGGTTT+TGG 0.296130 4_3:+58336505 None:intergenic
TTCTCACTAGCATTCGTCTT+TGG 0.296614 4_3:+58335007 None:intergenic
CCATATGCAGCTACAAGTTC+AGG 0.303006 4_3:-58332760 Msa0651060:CDS
GTGGCGACGGTTGTGGGTGG+TGG 0.306966 4_3:+58336713 None:intergenic
AAAATGCAGTTTCTTATAAT+GGG 0.314501 4_3:-58335986 Msa0651060:CDS
GAGAGAATGCCGAGTGAGTT+AGG 0.319234 4_3:+58336359 None:intergenic
TGAAACTAAATCTCCTTTCA+TGG 0.327719 4_3:-58336255 Msa0651060:CDS
ACAGCAATGGGACCCGCATC+AGG 0.328618 4_3:-58335118 Msa0651060:CDS
CACGGCCCACCATTCTTTAT+AGG 0.339685 4_3:+58334932 None:intergenic
AGTGAGCCACCATCTGTATC+AGG 0.341406 4_3:+58332721 None:intergenic
TCAAATGGATGCGGTTTATT+CGG 0.344476 4_3:-58336105 Msa0651060:CDS
GAGGAAGGTGGCGACGGTTG+TGG 0.351074 4_3:+58336706 None:intergenic
AGGAAGGTGGCGACGGTTGT+GGG 0.352793 4_3:+58336707 None:intergenic
AATGTGGGTGATTGTGGTTT+GGG 0.355018 4_3:+58336679 None:intergenic
CAGGCAATGGGACCCGCATC+AGG 0.356382 4_3:-58335145 Msa0651060:CDS
ACTATTTCGGAGCAGAATTA+CGG 0.359928 4_3:-58335861 Msa0651060:CDS
TAATGTGGGTGATTGTGGTT+TGG 0.360475 4_3:+58336678 None:intergenic
GAAGTGATATAATCTAAGTT+TGG 0.364134 4_3:+58332684 None:intergenic
TTGGCCTTCTTTGGGTGACC+CGG 0.364508 4_3:-58336030 Msa0651060:CDS
GAAACGGGTTGGCCTTCTTT+GGG 0.373731 4_3:-58336038 Msa0651060:CDS
GAATCTTAAACCTACTATTT+CGG 0.373792 4_3:-58335874 Msa0651060:CDS
TATGGTTAACGTATGCGATT+TGG 0.374278 4_3:-58332584 Msa0651060:three_prime_UTR
TGCTAGTGAGAAAGCGTTGC+AGG 0.375426 4_3:-58334996 Msa0651060:CDS
TTTCTGATAATATGCATTCA+TGG 0.378067 4_3:+58334871 None:intergenic
TATGTTCCTAGTTAAGATTA+TGG 0.378482 4_3:-58332602 Msa0651060:three_prime_UTR
ACGGCGGAAAGCGGCGGAGC+TGG 0.378862 4_3:+58336322 None:intergenic
GGGTCAACCCGGTGTGAGTT+TGG 0.380428 4_3:-58336009 Msa0651060:CDS
CTATTTCGGAGCAGAATTAC+GGG 0.380969 4_3:-58335860 Msa0651060:CDS
TTACACCGGTTTATGACGTT+GGG 0.381082 4_3:-58335821 Msa0651060:CDS
CGGCGGAAAGCGGCGGAGCT+GGG 0.381878 4_3:+58336323 None:intergenic
TTCTTTGAAGGAGACGATTC+CGG 0.384255 4_3:+58335040 None:intergenic
TGCATCTGAGCCCACGGCAA+TGG 0.387711 4_3:-58335077 Msa0651060:CDS
GGGTTATGGTGACGTGGATT+TGG 0.392613 4_3:-58336069 Msa0651060:CDS
TTGAGTGAGGGGTGAGATTG+AGG 0.399975 4_3:+58336858 None:intergenic
TTATTAAGCATGTTAATTCT+GGG 0.403241 4_3:-58335959 Msa0651060:CDS
AGAAGAAGAAGTAAGTGAAA+AGG 0.406677 4_3:+58336818 None:intergenic
CAACATGTTTGACGCTCAAA+TGG 0.408790 4_3:-58336120 Msa0651060:CDS
AATGCATATTATCAGAAATC+TGG 0.412484 4_3:-58334866 Msa0651060:CDS
GTTGGTGGTTATCCATTGTT+GGG 0.416350 4_3:+58336544 None:intergenic
GGCACGCACCATTTCTTTGA+AGG 0.417988 4_3:+58335028 None:intergenic
GAATTACGGGTTGTTTAAAC+CGG 0.424322 4_3:-58335847 Msa0651060:CDS
TGGTGGGAGGTTGTCGGCGA+TGG 0.425680 4_3:+58336730 None:intergenic
CCTGAACTTGTAGCTGCATA+TGG 0.426000 4_3:+58332760 None:intergenic
GTAGGTGGCGGAGGAGAAGT+TGG 0.426078 4_3:+58336775 None:intergenic
CGCATGGGACCTCAGTGAAT+CGG 0.426631 4_3:+58334901 None:intergenic
TGTTGGTGGTTATCCATTGT+TGG 0.429432 4_3:+58336543 None:intergenic
AATCGTCTCCTTCAAAGAAA+TGG 0.433918 4_3:-58335036 Msa0651060:CDS
ATTGCCGTGGGCTCAGATGC+AGG 0.439362 4_3:+58335079 None:intergenic
TAAGTCTCAAAGGTTCTATT+AGG 0.441760 4_3:+58335918 None:intergenic
TACGCTTTGTTTAAACCAAA+CGG 0.443987 4_3:-58336179 Msa0651060:CDS
CGCATCAATTTGACCTAGGA+AGG 0.445031 4_3:-58332534 Msa0651060:three_prime_UTR
GGTTATCCATTGTTGGGCGG+AGG 0.447089 4_3:+58336550 None:intergenic
TAATTCTGCTCCGAAATAGT+AGG 0.456073 4_3:+58335864 None:intergenic
ATTGCTGTTGGCCCTGATGC+GGG 0.456448 4_3:+58335106 None:intergenic
ATTGCTGTTGGCCCTGATGC+GGG 0.456448 4_3:+58335133 None:intergenic
GCATCAGGGCCAACAGCAAT+GGG 0.460085 4_3:-58335130 Msa0651060:CDS
TTTGAGTATGGGAGTGAAGA+TGG 0.460178 4_3:+58336286 None:intergenic
TGTGGGTGGTGGGAGGTTGT+CGG 0.463071 4_3:+58336724 None:intergenic
GGATTTGGTTATTGGAGAAA+CGG 0.465568 4_3:-58336054 Msa0651060:CDS
AAAATACAAATACCCTTCCT+AGG 0.466441 4_3:+58332521 None:intergenic
CGCATCAGGGCCAACAGCAA+TGG 0.466828 4_3:-58335104 Msa0651060:CDS
GCATGGGACCTCAGTGAATC+GGG 0.468310 4_3:+58334902 None:intergenic
GTTATCCATTGTTGGGCGGA+GGG 0.469391 4_3:+58336551 None:intergenic
TGGCCTTCTTTGGGTGACCC+GGG 0.470182 4_3:-58336029 Msa0651060:CDS
CGCATCAGGGCCAACAGCAA+TGG 0.474043 4_3:-58335131 Msa0651060:CDS
AGCTTGATGAAGTGCATTCA+TGG 0.474444 4_3:+58336421 None:intergenic
CTCTGATGGCCCCATTGCCG+TGG 0.477360 4_3:+58335066 None:intergenic
AGCGGCGGAGCTGGGTGGTG+AGG 0.479049 4_3:+58336331 None:intergenic
CGTTAACCATAATCTTAACT+AGG 0.481090 4_3:+58332596 None:intergenic
GCATCAGGGCCAACAGCAAT+GGG 0.481429 4_3:-58335103 Msa0651060:CDS
CATTCATGGCGTAGGCCGCA+TGG 0.487790 4_3:+58334885 None:intergenic
GATTTGGTTATTGGAGAAAC+GGG 0.488611 4_3:-58336053 Msa0651060:CDS
AAACTCACACCGGGTTGACC+CGG 0.489870 4_3:+58336011 None:intergenic
AAAACCCCAACGTCATAAAC+CGG 0.493575 4_3:+58335816 None:intergenic
GCGATGAAGAAAGTGGGTTA+TGG 0.499058 4_3:-58336083 Msa0651060:CDS
CGTAGTTAAGTGCGTCGGGT+TGG 0.507173 4_3:+58336198 None:intergenic
GGGATGGTAAGGGAGGATGT+TGG 0.509749 4_3:+58336526 None:intergenic
AAAGCGTAGTTAAGTGCGTC+GGG 0.510135 4_3:+58336194 None:intergenic
GCCGATGTTGTAGGTGGCGG+AGG 0.512504 4_3:+58336766 None:intergenic
TTTCGTTACCGACGGCGATA+CGG 0.515705 4_3:+58336489 None:intergenic
GTCGGCGTTGGAGACGGTTA+CGG 0.516344 4_3:+58336595 None:intergenic
TGGCGACGGTTGTGGGTGGT+GGG 0.516389 4_3:+58336714 None:intergenic
AAGCATGTTAATTCTGGGAA+AGG 0.516430 4_3:-58335954 Msa0651060:CDS
CTTACACCGGTTTATGACGT+TGG 0.517304 4_3:-58335822 Msa0651060:CDS
GTAGTTGACGCCGATGTTGT+AGG 0.518828 4_3:+58336757 None:intergenic
TGAGGAAGGAAAGAAGTAAG+TGG 0.520063 4_3:+58336876 None:intergenic
GTGAGGGGTGAGATTGAGGA+AGG 0.520861 4_3:+58336862 None:intergenic
GTTGGCGAAGGCGCGGAGGA+TGG 0.522927 4_3:+58336634 None:intergenic
TGCAGCCATGGGATAGATTG+TGG 0.523813 4_3:-58334956 Msa0651060:CDS
TGAAAGGAGATTTAGTTTCA+CGG 0.526342 4_3:+58336258 None:intergenic
CGACGGTTGTGGGTGGTGGG+AGG 0.527264 4_3:+58336717 None:intergenic
TGAGAAAATGTAAGTCTCAA+AGG 0.527355 4_3:+58335908 None:intergenic
AGGGATGTCGGCGTTGGAGA+CGG 0.529818 4_3:+58336589 None:intergenic
TCACGGTGGAATTTGAGTAT+GGG 0.531714 4_3:+58336275 None:intergenic
TACAACATCGGCGTCAACTA+CGG 0.534301 4_3:-58336755 Msa0651060:CDS
GATGCAGGACCCATTGCTGT+TGG 0.534921 4_3:+58335094 None:intergenic
CATATGCAGCTACAAGTTCA+GGG 0.535774 4_3:-58332759 Msa0651060:CDS
GATGCGGGTCCCATTGCTGT+TGG 0.536050 4_3:+58335121 None:intergenic
GACGGCGATACGGTTGAAGA+TGG 0.536299 4_3:+58336499 None:intergenic
TCTGATGGCCCCATTGCCGT+GGG 0.539096 4_3:+58335067 None:intergenic
ATTGACTATGTGTGCAGCCA+TGG 0.539482 4_3:-58334968 Msa0651060:CDS
GTAATGTAACCACAGGCAAT+GGG 0.541692 4_3:-58335157 Msa0651060:intron
ATTCATGGCGTAGGCCGCAT+GGG 0.541939 4_3:+58334886 None:intergenic
GCAGCCATGGGATAGATTGT+GGG 0.542242 4_3:-58334955 Msa0651060:CDS
ATGGTAAGGGAGGATGTTGG+TGG 0.545195 4_3:+58336529 None:intergenic
AACTCCCCTCCGCCCAACAA+TGG 0.547508 4_3:-58336556 Msa0651060:CDS
TCCTCCGCCACCTACAACAT+CGG 0.548536 4_3:-58336767 Msa0651060:CDS
TCATAAACCGGTGTAAGATC+CGG 0.549529 4_3:+58335828 None:intergenic
AATGGGGCCATCAGAGTCAC+CGG 0.551649 4_3:-58335059 Msa0651060:CDS
GATTGTGGGCCTATAAAGAA+TGG 0.554406 4_3:-58334941 Msa0651060:CDS
AACTCACACCGGGTTGACCC+GGG 0.554491 4_3:+58336012 None:intergenic
AAGGTTCTATTAGGCATCAA+AGG 0.556375 4_3:+58335927 None:intergenic
TGATGAAGTGCATTCATGGC+GGG 0.556738 4_3:+58336425 None:intergenic
AGAAGTTGGAAGTTGAGAGA+AGG 0.556925 4_3:+58336789 None:intergenic
TTATCCATTGTTGGGCGGAG+GGG 0.557483 4_3:+58336552 None:intergenic
CATTGCTGTTGGCCCTGATG+CGG 0.558259 4_3:+58335132 None:intergenic
GAGGGAAGGGATGTCGGCGT+TGG 0.558404 4_3:+58336583 None:intergenic
GGGTCCTGCATCTGAGCCCA+CGG 0.559775 4_3:-58335083 Msa0651060:CDS
TGGTTATTGGAGAAACGGGT+TGG 0.560351 4_3:-58336049 Msa0651060:CDS
ATATAATCTAAGTTTGGAAG+TGG 0.562769 4_3:+58332690 None:intergenic
TTGGGTGACCCGGGTCAACC+CGG 0.564347 4_3:-58336020 Msa0651060:CDS
CATTGCTGTTGGCCCTGATG+CGG 0.564830 4_3:+58335105 None:intergenic
CAGCAATGGGACCCGCATCA+GGG 0.567971 4_3:-58335117 Msa0651060:CDS
GTTTGACGCTCAAATGGATG+CGG 0.568510 4_3:-58336114 Msa0651060:CDS
AGCTCCGCCGCTTTCCGCCG+TGG 0.568513 4_3:-58336320 Msa0651060:CDS
GACGCCGATGTTGTAGGTGG+CGG 0.571038 4_3:+58336763 None:intergenic
TGACCCGGGTCACCCAAAGA+AGG 0.573068 4_3:+58336026 None:intergenic
CAAAGCGTAGTTAAGTGCGT+CGG 0.573159 4_3:+58336193 None:intergenic
ATAATATGCATTCATGGCGT+AGG 0.573503 4_3:+58334877 None:intergenic
GTAGCCACGGCGGAAAGCGG+CGG 0.576860 4_3:+58336316 None:intergenic
GGAGATGTTGGTGTTGGCGA+AGG 0.579098 4_3:+58336622 None:intergenic
CATTTGAGCGTCAAACATGT+TGG 0.579173 4_3:+58336121 None:intergenic
AGGCAATGGGACCCGCATCA+GGG 0.580179 4_3:-58335144 Msa0651060:CDS
ATCTTCAACCGTATCGCCGT+CGG 0.580682 4_3:-58336497 Msa0651060:CDS
AAGGTGGCGACGGTTGTGGG+TGG 0.581254 4_3:+58336710 None:intergenic
TGCGAGGATTTCGTTACCGA+CGG 0.583665 4_3:+58336481 None:intergenic
GTCGTAGCCACGGCGGAAAG+CGG 0.584047 4_3:+58336313 None:intergenic
TGTTGGTGTTGGCGAAGGCG+CGG 0.584813 4_3:+58336627 None:intergenic
CGGAAAGCGGCGGAGCTGGG+TGG 0.590199 4_3:+58336326 None:intergenic
TTATTCGGCGATGAAGAAAG+TGG 0.592387 4_3:-58336090 Msa0651060:CDS
GACGATTCCGGTGACTCTGA+TGG 0.592672 4_3:+58335052 None:intergenic
GTTGGAGACGGTTACGGTGA+CGG 0.594352 4_3:+58336601 None:intergenic
CTCTCGCATCAATTTGACCT+AGG 0.597172 4_3:-58332538 Msa0651060:three_prime_UTR
TACACCGGTTTATGACGTTG+GGG 0.597317 4_3:-58335820 Msa0651060:CDS
GTTTAAACCGGATCTTACAC+CGG 0.598400 4_3:-58335835 Msa0651060:CDS
GGTTACGGTGACGGAGATGT+TGG 0.608393 4_3:+58336610 None:intergenic
GGATACGGGTTAACCATGAA+AGG 0.614772 4_3:+58336242 None:intergenic
TATTCGGCGATGAAGAAAGT+GGG 0.614835 4_3:-58336089 Msa0651060:CDS
ATCACATCTCCTAACTCACT+CGG 0.619348 4_3:-58336368 Msa0651060:CDS
AGATGGTAACGTCGTAGCCA+CGG 0.622998 4_3:+58336303 None:intergenic
TAGGCCCACAATCTATCCCA+TGG 0.624924 4_3:+58334951 None:intergenic
TGTGGGCCTATAAAGAATGG+TGG 0.629073 4_3:-58334938 Msa0651060:CDS
CAAAATCACAATCAGAATCG+TGG 0.635094 4_3:+58334840 None:intergenic
CTAGGTCAAATTGATGCGAG+AGG 0.636449 4_3:+58332539 None:intergenic
GTGGGCCTATAAAGAATGGT+GGG 0.638570 4_3:-58334937 Msa0651060:CDS
TTGACTATGTGTGCAGCCAT+GGG 0.639016 4_3:-58334967 Msa0651060:CDS
GGTGGTTATCCATTGTTGGG+CGG 0.649092 4_3:+58336547 None:intergenic
AGTGAATCGGGCTTATAACA+CGG 0.650467 4_3:+58334914 None:intergenic
GGTGACGGAGATGTTGGTGT+TGG 0.651352 4_3:+58336616 None:intergenic
CATCTGAGCCCACGGCAATG+GGG 0.656084 4_3:-58335075 Msa0651060:CDS
GTTGACGCCGATGTTGTAGG+TGG 0.658363 4_3:+58336760 None:intergenic
GCATCAATTTGACCTAGGAA+GGG 0.662138 4_3:-58332533 Msa0651060:three_prime_UTR
GAAAGTGGGTTATGGTGACG+TGG 0.664611 4_3:-58336075 Msa0651060:CDS
CGATTCACTGAGGTCCCATG+CGG 0.688080 4_3:-58334900 Msa0651060:CDS
TGGTGTTGGCGAAGGCGCGG+AGG 0.689311 4_3:+58336630 None:intergenic
GCTTTGTTTAAACCAAACGG+TGG 0.698649 4_3:-58336176 Msa0651060:CDS
TTGATGAAGTGCATTCATGG+CGG 0.706655 4_3:+58336424 None:intergenic
AAGGAGATTTAGTTTCACGG+TGG 0.707590 4_3:+58336261 None:intergenic
GTTATAAGCCCGATTCACTG+AGG 0.751026 4_3:-58334910 Msa0651060:CDS
TGGTAACGTCGTAGCCACGG+CGG 0.808289 4_3:+58336306 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATGATTAAATTAAATGTT+GGG - chr4_3:58334627-58334646 Msa0651060:intron 10.0%
!! CATATAATAAAAACATTTAA+GGG + chr4_3:58335730-58335749 None:intergenic 10.0%
!! ACATATAATAAAAACATTTA+AGG + chr4_3:58335731-58335750 None:intergenic 10.0%
!! TAAAATAAACAGATAAATGA+AGG + chr4_3:58333572-58333591 None:intergenic 15.0%
!!! TTAATCATATGTTTTTTTAC+AGG + chr4_3:58334617-58334636 None:intergenic 15.0%
!! CATATGATTAAATTAAATGT+TGG - chr4_3:58334626-58334645 Msa0651060:intron 15.0%
!! ATAATCAAATATGTTATGAA+TGG - chr4_3:58334879-58334898 Msa0651060:CDS 15.0%
!!! ATTTAAAGTGCATAATTTAA+TGG - chr4_3:58335446-58335465 Msa0651060:intron 15.0%
!!! ATTTTGAAACAATTTAGATT+AGG - chr4_3:58336227-58336246 Msa0651060:CDS 15.0%
!! AGGTATAATAAAATAAAAAC+AGG + chr4_3:58336343-58336362 None:intergenic 15.0%
!! AAAAAAACTTATGAGAATAT+GGG - chr4_3:58336503-58336522 Msa0651060:CDS 15.0%
!! AAAATGCAGTTTCTTATAAT+GGG - chr4_3:58333332-58333351 Msa0651060:intron 20.0%
!! TTATTAAGCATGTTAATTCT+GGG - chr4_3:58333359-58333378 Msa0651060:intron 20.0%
!! AAAGAAAAAATGTATAGGTA+CGG + chr4_3:58333549-58333568 None:intergenic 20.0%
!!! CATTTATCTGTTTATTTTAG+TGG - chr4_3:58333573-58333592 Msa0651060:intron 20.0%
!!! TAAGGTTATGTTTATTGTTT+TGG + chr4_3:58334006-58334025 None:intergenic 20.0%
!! ATTAAAATACAGTTAGAGTA+AGG + chr4_3:58334024-58334043 None:intergenic 20.0%
!! CAAATAAGTAAAACTTACTA+GGG + chr4_3:58334532-58334551 None:intergenic 20.0%
!! ACAAATAAGTAAAACTTACT+AGG + chr4_3:58334533-58334552 None:intergenic 20.0%
!!! TTACATGAGTTTAATTTTGA+TGG - chr4_3:58334558-58334577 Msa0651060:intron 20.0%
!!! TTTTACAGGATTTAATCATA+TGG + chr4_3:58334603-58334622 None:intergenic 20.0%
!!! AATATGTATGAAATTTTCTG+TGG - chr4_3:58334850-58334869 Msa0651060:CDS 20.0%
!! CAAGATTAAATTTATGTTGT+AGG - chr4_3:58335265-58335284 Msa0651060:intron 20.0%
!! CAAGTGACATAAAATTATAA+AGG + chr4_3:58335823-58335842 None:intergenic 20.0%
!! TTCAAAATAACAACAAATCT+AGG + chr4_3:58336215-58336234 None:intergenic 20.0%
!! GAAAAAAACTTATGAGAATA+TGG - chr4_3:58336502-58336521 Msa0651060:CDS 20.0%
! TTTGATGAAATACCGAAAAA+CGG + chr4_3:58333100-58333119 None:intergenic 25.0%
! GAAAATGCAGTTTCTTATAA+TGG - chr4_3:58333331-58333350 Msa0651060:intron 25.0%
! CTTATTAAGCATGTTAATTC+TGG - chr4_3:58333358-58333377 Msa0651060:intron 25.0%
! GAATCTTAAACCTACTATTT+CGG - chr4_3:58333444-58333463 Msa0651060:intron 25.0%
! GAAGGAAAGAAAAAATGTAT+AGG + chr4_3:58333554-58333573 None:intergenic 25.0%
!!! GCTTTTGGTTAAAATTTGAA+AGG - chr4_3:58333815-58333834 Msa0651060:intron 25.0%
! TTTCTGATAATATGCATTCA+TGG + chr4_3:58334450-58334469 None:intergenic 25.0%
! AATGCATATTATCAGAAATC+TGG - chr4_3:58334452-58334471 Msa0651060:intron 25.0%
!! TTGTATTTTATCATGAGTCA+AGG + chr4_3:58334701-58334720 None:intergenic 25.0%
! TTTACTTGTCTCATGATATT+TGG - chr4_3:58334759-58334778 Msa0651060:intron 25.0%
! AAGTTAGACAATCATTATCA+TGG + chr4_3:58335049-58335068 None:intergenic 25.0%
! AAATTTAATCTTGCAACAAC+AGG + chr4_3:58335258-58335277 None:intergenic 25.0%
! CATCATTAATTCTTAGACTA+TGG + chr4_3:58335352-58335371 None:intergenic 25.0%
! AGAGAATCATATGAGATTTA+GGG - chr4_3:58335503-58335522 Msa0651060:intron 25.0%
! AAAGTAACCCAAACAAAAAT+GGG + chr4_3:58335548-58335567 None:intergenic 25.0%
!! TTTGTATTTTATACTGAGTC+AGG - chr4_3:58335656-58335675 Msa0651060:intron 25.0%
!! TTGTATTTTATACTGAGTCA+GGG - chr4_3:58335657-58335676 Msa0651060:intron 25.0%
! TCATATAAAAGTGACTTGAA+CGG + chr4_3:58335899-58335918 None:intergenic 25.0%
!!! AATTGATTTTAGTTGAAGCT+AGG - chr4_3:58336032-58336051 Msa0651060:CDS 25.0%
! TATGTTTCATACATTTGCAT+GGG + chr4_3:58336404-58336423 None:intergenic 25.0%
! TTATGTTTCATACATTTGCA+TGG + chr4_3:58336405-58336424 None:intergenic 25.0%
! ATATAATCTAAGTTTGGAAG+TGG + chr4_3:58336631-58336650 None:intergenic 25.0%
! GAAGTGATATAATCTAAGTT+TGG + chr4_3:58336637-58336656 None:intergenic 25.0%
! TATGTTCCTAGTTAAGATTA+TGG - chr4_3:58336716-58336735 Msa0651060:CDS 25.0%
!!! TTGGAAGTAGATGTTTTTTT+TGG - chr4_3:58336753-58336772 Msa0651060:CDS 25.0%
!!! TGGAAGTAGATGTTTTTTTT+GGG - chr4_3:58336754-58336773 Msa0651060:CDS 25.0%
! ATAATCATGACTGAAAAATG+TGG - chr4_3:58336866-58336885 Msa0651060:five_prime_UTR 25.0%
!!! CATTTTGATTTTTGAGTGAG+GGG + chr4_3:58332474-58332493 None:intergenic 30.0%
!!! CCATTTTGATTTTTGAGTGA+GGG + chr4_3:58332475-58332494 None:intergenic 30.0%
AGAAGAAGAAGTAAGTGAAA+AGG + chr4_3:58332503-58332522 None:intergenic 30.0%
!! TGTGTCGAAGATTTTAATGT+GGG + chr4_3:58332657-58332676 None:intergenic 30.0%
!! TTGTGTCGAAGATTTTAATG+TGG + chr4_3:58332658-58332677 None:intergenic 30.0%
! TGAAAGGAGATTTAGTTTCA+CGG + chr4_3:58333063-58333082 None:intergenic 30.0%
TGAAACTAAATCTCCTTTCA+TGG - chr4_3:58333063-58333082 Msa0651060:intron 30.0%
!! TACGCTTTGTTTAAACCAAA+CGG - chr4_3:58333139-58333158 Msa0651060:intron 30.0%
TAAGTCTCAAAGGTTCTATT+AGG + chr4_3:58333403-58333422 None:intergenic 30.0%
TGAGAAAATGTAAGTCTCAA+AGG + chr4_3:58333413-58333432 None:intergenic 30.0%
TTTAACCCAAAAACATCAAC+AGG - chr4_3:58333522-58333541 Msa0651060:intron 30.0%
! TGTACTAATTTGTCACGTAA+AGG + chr4_3:58333671-58333690 None:intergenic 30.0%
AAATTCCAGACAAAACATAG+GGG + chr4_3:58333724-58333743 None:intergenic 30.0%
CAAATTCCAGACAAAACATA+GGG + chr4_3:58333725-58333744 None:intergenic 30.0%
!! TTTGTCTGGAATTTGCATTT+TGG - chr4_3:58333730-58333749 Msa0651060:intron 30.0%
!! TTGTCTGGAATTTGCATTTT+GGG - chr4_3:58333731-58333750 Msa0651060:intron 30.0%
TGTAATTGTAATGTAACCAC+AGG - chr4_3:58334154-58334173 Msa0651060:intron 30.0%
GGATTTAATCATATGGTTGA+TGG + chr4_3:58334596-58334615 None:intergenic 30.0%
AAGTAAACACAATATGCTGA+CGG + chr4_3:58334746-58334765 None:intergenic 30.0%
TTTGGCTGTATAAAGAACTA+TGG + chr4_3:58334791-58334810 None:intergenic 30.0%
GTTCAGACAACTAACATATT+TGG + chr4_3:58334809-58334828 None:intergenic 30.0%
AAAAATTTACTTCCTGTGTC+AGG + chr4_3:58335013-58335032 None:intergenic 30.0%
ATTGAACTATCAGTCAGAAT+TGG - chr4_3:58335123-58335142 Msa0651060:CDS 30.0%
ACTATGACATCACAAAAATG+AGG + chr4_3:58335307-58335326 None:intergenic 30.0%
TACTTCAATTTCAAGCCAAA+TGG - chr4_3:58335397-58335416 Msa0651060:intron 30.0%
GAGAGAATCATATGAGATTT+AGG - chr4_3:58335502-58335521 Msa0651060:intron 30.0%
!! ATTTTGTCCCCATTTTTGTT+TGG - chr4_3:58335537-58335556 Msa0651060:intron 30.0%
!! TTTTGTCCCCATTTTTGTTT+GGG - chr4_3:58335538-58335557 Msa0651060:intron 30.0%
AAGTAACCCAAACAAAAATG+GGG + chr4_3:58335547-58335566 None:intergenic 30.0%
GAAAGTAACCCAAACAAAAA+TGG + chr4_3:58335549-58335568 None:intergenic 30.0%
!! TGTTTGGGTTACTTTCATTT+TGG - chr4_3:58335553-58335572 Msa0651060:intron 30.0%
TACAAATACAAAATAGTCCC+TGG + chr4_3:58335642-58335661 None:intergenic 30.0%
AATCATTTCACGTGTATGTT+TGG - chr4_3:58335950-58335969 Msa0651060:CDS 30.0%
TCAACTAAAATCAATTCTGG+AGG + chr4_3:58336028-58336047 None:intergenic 30.0%
GCTTCAACTAAAATCAATTC+TGG + chr4_3:58336031-58336050 None:intergenic 30.0%
AAAATAAAAACAGGTCCTAC+CGG + chr4_3:58336334-58336353 None:intergenic 30.0%
TTGGTGAATCAAAAAATTGC+AGG + chr4_3:58336363-58336382 None:intergenic 30.0%
TTGATTCACCAAGAAAATGA+AGG - chr4_3:58336371-58336390 Msa0651060:CDS 30.0%
!! ACAACTATTGTATTGATTGC+TGG - chr4_3:58336476-58336495 Msa0651060:CDS 30.0%
!! CAACTATTGTATTGATTGCT+GGG - chr4_3:58336477-58336496 Msa0651060:CDS 30.0%
CGTTAACCATAATCTTAACT+AGG + chr4_3:58336725-58336744 None:intergenic 30.0%
AAAATACAAATACCCTTCCT+AGG + chr4_3:58336800-58336819 None:intergenic 30.0%
CCCTCACTCAAAAATCAAAA+TGG - chr4_3:58332472-58332491 Msa0651060:three_prime_UTR 35.0%
!!! GCCATTTTGATTTTTGAGTG+AGG + chr4_3:58332476-58332495 None:intergenic 35.0%
!! GATTTTAATGTGGGTGATTG+TGG + chr4_3:58332648-58332667 None:intergenic 35.0%
! ATACGGTTGAAGATGGTTTT+GGG + chr4_3:58332815-58332834 None:intergenic 35.0%
AAATACCGAAAAACGGATAC+GGG + chr4_3:58333093-58333112 None:intergenic 35.0%
GAAATACCGAAAAACGGATA+CGG + chr4_3:58333094-58333113 None:intergenic 35.0%
TCAAATGGATGCGGTTTATT+CGG - chr4_3:58333213-58333232 Msa0651060:intron 35.0%
! GGATTTGGTTATTGGAGAAA+CGG - chr4_3:58333264-58333283 Msa0651060:intron 35.0%
! GATTTGGTTATTGGAGAAAC+GGG - chr4_3:58333265-58333284 Msa0651060:intron 35.0%
! AAGCATGTTAATTCTGGGAA+AGG - chr4_3:58333364-58333383 Msa0651060:intron 35.0%
AAGGTTCTATTAGGCATCAA+AGG + chr4_3:58333394-58333413 None:intergenic 35.0%
TAATTCTGCTCCGAAATAGT+AGG + chr4_3:58333457-58333476 None:intergenic 35.0%
ACTATTTCGGAGCAGAATTA+CGG - chr4_3:58333457-58333476 Msa0651060:intron 35.0%
! GAATTACGGGTTGTTTAAAC+CGG - chr4_3:58333471-58333490 Msa0651060:intron 35.0%
GCAAATTCCAGACAAAACAT+AGG + chr4_3:58333726-58333745 None:intergenic 35.0%
!! TGTCTGGAATTTGCATTTTG+GGG - chr4_3:58333732-58333751 Msa0651060:intron 35.0%
TTTAACCAAAAGCTAGCAAG+TGG + chr4_3:58333808-58333827 None:intergenic 35.0%
!! TTGAAAGGCATTTGACTTGA+AGG - chr4_3:58333830-58333849 Msa0651060:intron 35.0%
AAGTGACAGGTTAATGCTTT+GGG + chr4_3:58333869-58333888 None:intergenic 35.0%
AAAGTGACAGGTTAATGCTT+TGG + chr4_3:58333870-58333889 None:intergenic 35.0%
TGAAGGAATAAGAAAGTGAC+AGG + chr4_3:58333882-58333901 None:intergenic 35.0%
TGGTACGTATTCATGAATGA+AGG + chr4_3:58333899-58333918 None:intergenic 35.0%
TCATTCATGAATACGTACCA+AGG - chr4_3:58333899-58333918 Msa0651060:intron 35.0%
TTGCACACGGTATTATTGTT+AGG - chr4_3:58333922-58333941 Msa0651060:intron 35.0%
ACACGGTATTATTGTTAGGT+CGG - chr4_3:58333926-58333945 Msa0651060:intron 35.0%
! TAGGTCGGTATTCATTTTAC+AGG - chr4_3:58333941-58333960 Msa0651060:intron 35.0%
AGTGTGAACTGTGTAAAGTT+TGG - chr4_3:58334090-58334109 Msa0651060:intron 35.0%
TGGTTTACACTTTACAGTGT+TGG - chr4_3:58334110-58334129 Msa0651060:intron 35.0%
!! ACTTTACAGTGTTGGCTAAT+GGG - chr4_3:58334118-58334137 Msa0651060:intron 35.0%
AATCGTCTCCTTCAAAGAAA+TGG - chr4_3:58334282-58334301 Msa0651060:intron 35.0%
ATAATATGCATTCATGGCGT+AGG + chr4_3:58334444-58334463 None:intergenic 35.0%
CAAAATCACAATCAGAATCG+TGG + chr4_3:58334481-58334500 None:intergenic 35.0%
! CACGATTCTGATTGTGATTT+TGG - chr4_3:58334479-58334498 Msa0651060:intron 35.0%
!! TGATTTGCTCTGATAATCAC+AGG - chr4_3:58334902-58334921 Msa0651060:CDS 35.0%
TAACATGTGCAGAAGCTAAT+AGG + chr4_3:58334940-58334959 None:intergenic 35.0%
! TTTTGTGATGTCATAGTCCA+AGG - chr4_3:58335310-58335329 Msa0651060:intron 35.0%
CAATTTCAAGCCAAATGGAA+AGG - chr4_3:58335402-58335421 Msa0651060:intron 35.0%
! AGATGAGGTGACAATTGTTT+TGG + chr4_3:58335610-58335629 None:intergenic 35.0%
TTAAGGGTAAACAGTCACTT+TGG + chr4_3:58335714-58335733 None:intergenic 35.0%
!! AATTTTGGTCTCTCTAGAAG+TGG + chr4_3:58335978-58335997 None:intergenic 35.0%
! TACACCTCGAGAATCAATTT+TGG + chr4_3:58335993-58336012 None:intergenic 35.0%
! AGAAGCACATCACAACAAAA+GGG - chr4_3:58336250-58336269 Msa0651060:CDS 35.0%
ATCACAACAAAAGGGTTCTA+TGG - chr4_3:58336258-58336277 Msa0651060:CDS 35.0%
AAATAAAAACAGGTCCTACC+GGG + chr4_3:58336333-58336352 None:intergenic 35.0%
ATTCACCAAGAAAATGAAGG+AGG - chr4_3:58336374-58336393 Msa0651060:CDS 35.0%
! GTATCAGGCTTTTTGACATT+TGG + chr4_3:58336585-58336604 None:intergenic 35.0%
TATGGTTAACGTATGCGATT+TGG - chr4_3:58336734-58336753 Msa0651060:CDS 35.0%
AGAAGTTGGAAGTTGAGAGA+AGG + chr4_3:58332532-58332551 None:intergenic 40.0%
!! TGATTGTGGTTTGGGTTTTG+AGG + chr4_3:58332634-58332653 None:intergenic 40.0%
AATGTGGGTGATTGTGGTTT+GGG + chr4_3:58332642-58332661 None:intergenic 40.0%
TAATGTGGGTGATTGTGGTT+TGG + chr4_3:58332643-58332662 None:intergenic 40.0%
!! GTTGGTGGTTATCCATTGTT+GGG + chr4_3:58332777-58332796 None:intergenic 40.0%
!! TGTTGGTGGTTATCCATTGT+TGG + chr4_3:58332778-58332797 None:intergenic 40.0%
!!! AGATGGTTTTGGGATGGTAA+GGG + chr4_3:58332805-58332824 None:intergenic 40.0%
!!! AAGATGGTTTTGGGATGGTA+AGG + chr4_3:58332806-58332825 None:intergenic 40.0%
! GATACGGTTGAAGATGGTTT+TGG + chr4_3:58332816-58332835 None:intergenic 40.0%
! GGGAAGAATGTGTGCTATTA+AGG + chr4_3:58332876-58332895 None:intergenic 40.0%
TTGATGAAGTGCATTCATGG+CGG + chr4_3:58332897-58332916 None:intergenic 40.0%
AGCTTGATGAAGTGCATTCA+TGG + chr4_3:58332900-58332919 None:intergenic 40.0%
ATCACATCTCCTAACTCACT+CGG - chr4_3:58332950-58332969 Msa0651060:intron 40.0%
TTTGAGTATGGGAGTGAAGA+TGG + chr4_3:58333035-58333054 None:intergenic 40.0%
TCACGGTGGAATTTGAGTAT+GGG + chr4_3:58333046-58333065 None:intergenic 40.0%
TTCACGGTGGAATTTGAGTA+TGG + chr4_3:58333047-58333066 None:intergenic 40.0%
! AAGGAGATTTAGTTTCACGG+TGG + chr4_3:58333060-58333079 None:intergenic 40.0%
!! GTTAACCCGTATCCGTTTTT+CGG - chr4_3:58333085-58333104 Msa0651060:intron 40.0%
!! GCTTTGTTTAAACCAAACGG+TGG - chr4_3:58333142-58333161 Msa0651060:intron 40.0%
TTATCAAAAACGCCACCGTT+TGG + chr4_3:58333157-58333176 None:intergenic 40.0%
! GGCGTTTTTGATAAAGCTAC+TGG - chr4_3:58333163-58333182 Msa0651060:intron 40.0%
CATTTGAGCGTCAAACATGT+TGG + chr4_3:58333200-58333219 None:intergenic 40.0%
CAACATGTTTGACGCTCAAA+TGG - chr4_3:58333198-58333217 Msa0651060:intron 40.0%
TTATTCGGCGATGAAGAAAG+TGG - chr4_3:58333228-58333247 Msa0651060:intron 40.0%
TATTCGGCGATGAAGAAAGT+GGG - chr4_3:58333229-58333248 Msa0651060:intron 40.0%
! TGCATTTTCCAAACTCACAC+CGG + chr4_3:58333320-58333339 None:intergenic 40.0%
CTATTTCGGAGCAGAATTAC+GGG - chr4_3:58333458-58333477 Msa0651060:intron 40.0%
GTTTAAACCGGATCTTACAC+CGG - chr4_3:58333483-58333502 Msa0651060:intron 40.0%
TCATAAACCGGTGTAAGATC+CGG + chr4_3:58333493-58333512 None:intergenic 40.0%
!! TTACACCGGTTTATGACGTT+GGG - chr4_3:58333497-58333516 Msa0651060:intron 40.0%
AAAACCCCAACGTCATAAAC+CGG + chr4_3:58333505-58333524 None:intergenic 40.0%
! ACGGACCTGTTGATGTTTTT+GGG + chr4_3:58333530-58333549 None:intergenic 40.0%
! TACGGACCTGTTGATGTTTT+TGG + chr4_3:58333531-58333550 None:intergenic 40.0%
!! GTCTGGAATTTGCATTTTGG+GGG - chr4_3:58333733-58333752 Msa0651060:intron 40.0%
!! TTGCATTTTGGGGGTTATTG+TGG - chr4_3:58333742-58333761 Msa0651060:intron 40.0%
AATAATACCGTGTGCAACCT+TGG + chr4_3:58333919-58333938 None:intergenic 40.0%
!! CACTTTACAGTGTTGGCTAA+TGG - chr4_3:58334117-58334136 Msa0651060:intron 40.0%
TGTAATGTAACCACAGGCAA+TGG - chr4_3:58334160-58334179 Msa0651060:intron 40.0%
GTAATGTAACCACAGGCAAT+GGG - chr4_3:58334161-58334180 Msa0651060:intron 40.0%
! TTCTTTGAAGGAGACGATTC+CGG + chr4_3:58334281-58334300 None:intergenic 40.0%
TTCTCACTAGCATTCGTCTT+TGG + chr4_3:58334314-58334333 None:intergenic 40.0%
GATTGTGGGCCTATAAAGAA+TGG - chr4_3:58334377-58334396 Msa0651060:intron 40.0%
AGTGAATCGGGCTTATAACA+CGG + chr4_3:58334407-58334426 None:intergenic 40.0%
! GATTGTGATTTTGGACACAC+TGG - chr4_3:58334488-58334507 Msa0651060:intron 40.0%
CTGACGGAGATACACATTTA+GGG + chr4_3:58334730-58334749 None:intergenic 40.0%
TGTCAGGTGTGTAATCATAC+AGG + chr4_3:58334997-58335016 None:intergenic 40.0%
TATGATTACACACCTGACAC+AGG - chr4_3:58334998-58335017 Msa0651060:CDS 40.0%
GCATTTCTGTTATTGCACCT+TGG + chr4_3:58335330-58335349 None:intergenic 40.0%
AGGATGAATGATGTGGCATA+GGG + chr4_3:58335580-58335599 None:intergenic 40.0%
AAGGATGAATGATGTGGCAT+AGG + chr4_3:58335581-58335600 None:intergenic 40.0%
!!! ACAATTGTTTTGGACTGGCA+AGG + chr4_3:58335600-58335619 None:intergenic 40.0%
!!! AGGTGACAATTGTTTTGGAC+TGG + chr4_3:58335605-58335624 None:intergenic 40.0%
! GAGACCAAAATTGATTCTCG+AGG - chr4_3:58335986-58336005 Msa0651060:CDS 40.0%
! GAGAAGCACATCACAACAAA+AGG - chr4_3:58336249-58336268 Msa0651060:CDS 40.0%
AAAAGGGTTCTATGGTGTAG+TGG - chr4_3:58336266-58336285 Msa0651060:CDS 40.0%
CATATGCAGCTACAAGTTCA+GGG - chr4_3:58336559-58336578 Msa0651060:CDS 40.0%
GTCAAAAAGCCTGATACAGA+TGG - chr4_3:58336588-58336607 Msa0651060:CDS 40.0%
AAAAAGCCTGATACAGATGG+TGG - chr4_3:58336591-58336610 Msa0651060:CDS 40.0%
GCATCAATTTGACCTAGGAA+GGG - chr4_3:58336785-58336804 Msa0651060:CDS 40.0%
TACAACATCGGCGTCAACTA+CGG - chr4_3:58332563-58332582 Msa0651060:three_prime_UTR 45.0%
!!! TGTGGTTTGGGTTTTGAGGA+AGG + chr4_3:58332630-58332649 None:intergenic 45.0%
! TTTTGTGAGGGAAGGGATGT+CGG + chr4_3:58332744-58332763 None:intergenic 45.0%
!!! GGTTGAAGATGGTTTTGGGA+TGG + chr4_3:58332811-58332830 None:intergenic 45.0%
!! AGGTTTTGTCTGAAGTTGCG+AGG + chr4_3:58332856-58332875 None:intergenic 45.0%
TGATGAAGTGCATTCATGGC+GGG + chr4_3:58332896-58332915 None:intergenic 45.0%
! GGATACGGGTTAACCATGAA+AGG + chr4_3:58333079-58333098 None:intergenic 45.0%
AAAGCGTAGTTAAGTGCGTC+GGG + chr4_3:58333127-58333146 None:intergenic 45.0%
CAAAGCGTAGTTAAGTGCGT+CGG + chr4_3:58333128-58333147 None:intergenic 45.0%
GTTTGACGCTCAAATGGATG+CGG - chr4_3:58333204-58333223 Msa0651060:intron 45.0%
!! GCGATGAAGAAAGTGGGTTA+TGG - chr4_3:58333235-58333254 Msa0651060:intron 45.0%
! GGTGACGTGGATTTGGTTAT+TGG - chr4_3:58333256-58333275 Msa0651060:intron 45.0%
TGGTTATTGGAGAAACGGGT+TGG - chr4_3:58333269-58333288 Msa0651060:intron 45.0%
! GCATTTTCCAAACTCACACC+GGG + chr4_3:58333319-58333338 None:intergenic 45.0%
!! CTTACACCGGTTTATGACGT+TGG - chr4_3:58333496-58333515 Msa0651060:intron 45.0%
!! TACACCGGTTTATGACGTTG+GGG - chr4_3:58333498-58333517 Msa0651060:intron 45.0%
TCGAACGAAACGGTCACAAA+AGG + chr4_3:58333621-58333640 None:intergenic 45.0%
CGCATATGCATCGAACGAAA+CGG + chr4_3:58333631-58333650 None:intergenic 45.0%
! CTATGCCCCTATGTTTTGTC+TGG - chr4_3:58333716-58333735 Msa0651060:intron 45.0%
ACAGGACACAGTCATTCACA+TGG + chr4_3:58333776-58333795 None:intergenic 45.0%
ATACGTACCAAGGTTGCACA+CGG - chr4_3:58333909-58333928 Msa0651060:intron 45.0%
ATTGACTATGTGTGCAGCCA+TGG - chr4_3:58334350-58334369 Msa0651060:intron 45.0%
TTGACTATGTGTGCAGCCAT+GGG - chr4_3:58334351-58334370 Msa0651060:intron 45.0%
TGTGGGCCTATAAAGAATGG+TGG - chr4_3:58334380-58334399 Msa0651060:intron 45.0%
GTGGGCCTATAAAGAATGGT+GGG - chr4_3:58334381-58334400 Msa0651060:intron 45.0%
GTTATAAGCCCGATTCACTG+AGG - chr4_3:58334408-58334427 Msa0651060:intron 45.0%
GCTGACGGAGATACACATTT+AGG + chr4_3:58334731-58334750 None:intergenic 45.0%
AGCCAAATGGAAAGGTTGAC+AGG - chr4_3:58335410-58335429 Msa0651060:intron 45.0%
GCCAAATGGAAAGGTTGACA+GGG - chr4_3:58335411-58335430 Msa0651060:intron 45.0%
ACCCTGTCAACCTTTCCATT+TGG + chr4_3:58335415-58335434 None:intergenic 45.0%
ACTGGCAAGGATGAATGATG+TGG + chr4_3:58335587-58335606 None:intergenic 45.0%
ACCTCATCTGTTTCACATCC+AGG - chr4_3:58335621-58335640 Msa0651060:intron 45.0%
CCTCATCTGTTTCACATCCA+GGG - chr4_3:58335622-58335641 Msa0651060:intron 45.0%
! GTGTGCCTCCTTCATTTTCT+TGG + chr4_3:58336382-58336401 None:intergenic 45.0%
CCTGAACTTGTAGCTGCATA+TGG + chr4_3:58336561-58336580 None:intergenic 45.0%
CCATATGCAGCTACAAGTTC+AGG - chr4_3:58336558-58336577 Msa0651060:CDS 45.0%
CTAGGTCAAATTGATGCGAG+AGG + chr4_3:58336782-58336801 None:intergenic 45.0%
CTCTCGCATCAATTTGACCT+AGG - chr4_3:58336780-58336799 Msa0651060:CDS 45.0%
CGCATCAATTTGACCTAGGA+AGG - chr4_3:58336784-58336803 Msa0651060:CDS 45.0%
TTGAGTGAGGGGTGAGATTG+AGG + chr4_3:58332463-58332482 None:intergenic 50.0%
GTAGTTGACGCCGATGTTGT+AGG + chr4_3:58332564-58332583 None:intergenic 50.0%
!!! GGTTTGGGTTTTGAGGAAGG+TGG + chr4_3:58332627-58332646 None:intergenic 50.0%
!! AGGGGAGTTTTGTGAGGGAA+GGG + chr4_3:58332751-58332770 None:intergenic 50.0%
TTATCCATTGTTGGGCGGAG+GGG + chr4_3:58332769-58332788 None:intergenic 50.0%
GTTATCCATTGTTGGGCGGA+GGG + chr4_3:58332770-58332789 None:intergenic 50.0%
GGTGGTTATCCATTGTTGGG+CGG + chr4_3:58332774-58332793 None:intergenic 50.0%
ATGGTAAGGGAGGATGTTGG+TGG + chr4_3:58332792-58332811 None:intergenic 50.0%
!!! TGGTTTTGGGATGGTAAGGG+AGG + chr4_3:58332802-58332821 None:intergenic 50.0%
ATCTTCAACCGTATCGCCGT+CGG - chr4_3:58332821-58332840 Msa0651060:intron 50.0%
TTTCGTTACCGACGGCGATA+CGG + chr4_3:58332832-58332851 None:intergenic 50.0%
TGCGAGGATTTCGTTACCGA+CGG + chr4_3:58332840-58332859 None:intergenic 50.0%
GAGAGAATGCCGAGTGAGTT+AGG + chr4_3:58332962-58332981 None:intergenic 50.0%
! AGATGGTAACGTCGTAGCCA+CGG + chr4_3:58333018-58333037 None:intergenic 50.0%
!! GAAAGTGGGTTATGGTGACG+TGG - chr4_3:58333243-58333262 Msa0651060:intron 50.0%
! GGGTTATGGTGACGTGGATT+TGG - chr4_3:58333249-58333268 Msa0651060:intron 50.0%
!! AGAAACGGGTTGGCCTTCTT+TGG - chr4_3:58333279-58333298 Msa0651060:intron 50.0%
!! GAAACGGGTTGGCCTTCTTT+GGG - chr4_3:58333280-58333299 Msa0651060:intron 50.0%
CCAAAAGCTAGCAAGTGGCA+AGG + chr4_3:58333803-58333822 None:intergenic 50.0%
!!! CCTTGCCACTTGCTAGCTTT+TGG - chr4_3:58333800-58333819 Msa0651060:intron 50.0%
GGCACGCACCATTTCTTTGA+AGG + chr4_3:58334293-58334312 None:intergenic 50.0%
!! TGCTAGTGAGAAAGCGTTGC+AGG - chr4_3:58334322-58334341 Msa0651060:intron 50.0%
TGCAGCCATGGGATAGATTG+TGG - chr4_3:58334362-58334381 Msa0651060:intron 50.0%
GCAGCCATGGGATAGATTGT+GGG - chr4_3:58334363-58334382 Msa0651060:intron 50.0%
TAGGCCCACAATCTATCCCA+TGG + chr4_3:58334370-58334389 None:intergenic 50.0%
CACGGCCCACCATTCTTTAT+AGG + chr4_3:58334389-58334408 None:intergenic 50.0%
TGAGTCAAGGACCACTGTGA+CGG + chr4_3:58334688-58334707 None:intergenic 50.0%
CCCTGGATGTGAAACAGATG+AGG + chr4_3:58335625-58335644 None:intergenic 50.0%
CATACACCTCGCTGTCACAA+TGG + chr4_3:58335684-58335703 None:intergenic 50.0%
TGACAGCGAGGTGTATGTCA+AGG - chr4_3:58335687-58335706 Msa0651060:intron 50.0%
TGGTGTAGTGGTTAGCACTC+TGG - chr4_3:58336278-58336297 Msa0651060:CDS 50.0%
GACTTTGAATCCAGCGACCT+GGG - chr4_3:58336300-58336319 Msa0651060:CDS 50.0%
AGAATATGGGTGCCTGTTGC+AGG - chr4_3:58336516-58336535 Msa0651060:CDS 50.0%
CATGTCTCAGAACCTGCAAC+AGG + chr4_3:58336531-58336550 None:intergenic 50.0%
AGTGAGCCACCATCTGTATC+AGG + chr4_3:58336600-58336619 None:intergenic 50.0%
GTGAGGGGTGAGATTGAGGA+AGG + chr4_3:58332459-58332478 None:intergenic 55.0%
TCCTCCGCCACCTACAACAT+CGG - chr4_3:58332551-58332570 Msa0651060:three_prime_UTR 55.0%
GTTGACGCCGATGTTGTAGG+TGG + chr4_3:58332561-58332580 None:intergenic 55.0%
!!! GGTTTTGAGGAAGGTGGCGA+CGG + chr4_3:58332621-58332640 None:intergenic 55.0%
!! GGAGATGTTGGTGTTGGCGA+AGG + chr4_3:58332699-58332718 None:intergenic 55.0%
!! GGTGACGGAGATGTTGGTGT+TGG + chr4_3:58332705-58332724 None:intergenic 55.0%
!! GGTTACGGTGACGGAGATGT+TGG + chr4_3:58332711-58332730 None:intergenic 55.0%
GTTGGAGACGGTTACGGTGA+CGG + chr4_3:58332720-58332739 None:intergenic 55.0%
!! GAGGGGAGTTTTGTGAGGGA+AGG + chr4_3:58332752-58332771 None:intergenic 55.0%
GGTTATCCATTGTTGGGCGG+AGG + chr4_3:58332771-58332790 None:intergenic 55.0%
GGGATGGTAAGGGAGGATGT+TGG + chr4_3:58332795-58332814 None:intergenic 55.0%
GACGGCGATACGGTTGAAGA+TGG + chr4_3:58332822-58332841 None:intergenic 55.0%
CGTAGTTAAGTGCGTCGGGT+TGG + chr4_3:58333123-58333142 None:intergenic 55.0%
! TTGGCCTTCTTTGGGTGACC+CGG - chr4_3:58333288-58333307 Msa0651060:intron 55.0%
! AAACTCACACCGGGTTGACC+CGG + chr4_3:58333310-58333329 None:intergenic 55.0%
AGCAAGTGGCAAGGTCAGAC+AGG + chr4_3:58333794-58333813 None:intergenic 55.0%
! ATTGCTGTTGGCCCTGATGC+GGG + chr4_3:58334188-58334207 None:intergenic 55.0%
! CATTGCTGTTGGCCCTGATG+CGG + chr4_3:58334189-58334208 None:intergenic 55.0%
GCATCAGGGCCAACAGCAAT+GGG - chr4_3:58334188-58334207 Msa0651060:intron 55.0%
! ATTGCTGTTGGCCCTGATGC+GGG + chr4_3:58334188-58334207 None:intergenic 55.0%
! CATTGCTGTTGGCCCTGATG+CGG + chr4_3:58334189-58334208 None:intergenic 55.0%
GCATCAGGGCCAACAGCAAT+GGG - chr4_3:58334188-58334207 Msa0651060:intron 55.0%
GATGCAGGACCCATTGCTGT+TGG + chr4_3:58334227-58334246 None:intergenic 55.0%
AATGGGGCCATCAGAGTCAC+CGG - chr4_3:58334259-58334278 Msa0651060:intron 55.0%
GACGATTCCGGTGACTCTGA+TGG + chr4_3:58334269-58334288 None:intergenic 55.0%
GCATGGGACCTCAGTGAATC+GGG + chr4_3:58334419-58334438 None:intergenic 55.0%
CGCATGGGACCTCAGTGAAT+CGG + chr4_3:58334420-58334439 None:intergenic 55.0%
CGATTCACTGAGGTCCCATG+CGG - chr4_3:58334418-58334437 Msa0651060:intron 55.0%
ATTCATGGCGTAGGCCGCAT+GGG + chr4_3:58334435-58334454 None:intergenic 55.0%
GGACTTTGAATCCAGCGACC+TGG - chr4_3:58336299-58336318 Msa0651060:CDS 55.0%
!! GTAGGTGGCGGAGGAGAAGT+TGG + chr4_3:58332546-58332565 None:intergenic 60.0%
GACGCCGATGTTGTAGGTGG+CGG + chr4_3:58332558-58332577 None:intergenic 60.0%
!! TGTGGGTGGTGGGAGGTTGT+CGG + chr4_3:58332597-58332616 None:intergenic 60.0%
AGGAAGGTGGCGACGGTTGT+GGG + chr4_3:58332614-58332633 None:intergenic 60.0%
!! TGTTGGTGTTGGCGAAGGCG+CGG + chr4_3:58332694-58332713 None:intergenic 60.0%
! GTCGGCGTTGGAGACGGTTA+CGG + chr4_3:58332726-58332745 None:intergenic 60.0%
! AGGGATGTCGGCGTTGGAGA+CGG + chr4_3:58332732-58332751 None:intergenic 60.0%
!! GGCGGAGGGGAGTTTTGTGA+GGG + chr4_3:58332756-58332775 None:intergenic 60.0%
AACTCCCCTCCGCCCAACAA+TGG - chr4_3:58332762-58332781 Msa0651060:CDS 60.0%
! TGGTAACGTCGTAGCCACGG+CGG + chr4_3:58333015-58333034 None:intergenic 60.0%
TGGCCTTCTTTGGGTGACCC+GGG - chr4_3:58333289-58333308 Msa0651060:intron 60.0%
TGACCCGGGTCACCCAAAGA+AGG + chr4_3:58333295-58333314 None:intergenic 60.0%
! AACTCACACCGGGTTGACCC+GGG + chr4_3:58333309-58333328 None:intergenic 60.0%
GGGTCAACCCGGTGTGAGTT+TGG - chr4_3:58333309-58333328 Msa0651060:intron 60.0%
AGGCAATGGGACCCGCATCA+GGG - chr4_3:58334174-58334193 Msa0651060:intron 60.0%
CGCATCAGGGCCAACAGCAA+TGG - chr4_3:58334187-58334206 Msa0651060:intron 60.0%
GATGCGGGTCCCATTGCTGT+TGG + chr4_3:58334200-58334219 None:intergenic 60.0%
ACAGCAATGGGACCCGCATC+AGG - chr4_3:58334200-58334219 Msa0651060:intron 60.0%
CAGCAATGGGACCCGCATCA+GGG - chr4_3:58334201-58334220 Msa0651060:intron 60.0%
CGCATCAGGGCCAACAGCAA+TGG - chr4_3:58334187-58334206 Msa0651060:intron 60.0%
ATTGCCGTGGGCTCAGATGC+AGG + chr4_3:58334242-58334261 None:intergenic 60.0%
TGCATCTGAGCCCACGGCAA+TGG - chr4_3:58334241-58334260 Msa0651060:intron 60.0%
GCATCTGAGCCCACGGCAAT+GGG - chr4_3:58334242-58334261 Msa0651060:intron 60.0%
CATCTGAGCCCACGGCAATG+GGG - chr4_3:58334243-58334262 Msa0651060:intron 60.0%
TCTGATGGCCCCATTGCCGT+GGG + chr4_3:58334254-58334273 None:intergenic 60.0%
CATTCATGGCGTAGGCCGCA+TGG + chr4_3:58334436-58334455 None:intergenic 60.0%
TGACGGCGAGGTGCAAAGTC+AGG + chr4_3:58334671-58334690 None:intergenic 60.0%
TTTGCACCTCGCCGTCACAG+TGG - chr4_3:58334674-58334693 Msa0651060:intron 60.0%
CAGGGACCATTGTGACAGCG+AGG - chr4_3:58335675-58335694 Msa0651060:intron 60.0%
AGCGACCTGGGTTTGACTCC+CGG - chr4_3:58336312-58336331 Msa0651060:CDS 60.0%
ACCTGGGTTTGACTCCCGGT+AGG - chr4_3:58336316-58336335 Msa0651060:CDS 60.0%
TCCTACCGGGAGTCAAACCC+AGG + chr4_3:58336320-58336339 None:intergenic 60.0%
! GCCGATGTTGTAGGTGGCGG+AGG + chr4_3:58332555-58332574 None:intergenic 65.0%
TGGTGGGAGGTTGTCGGCGA+TGG + chr4_3:58332591-58332610 None:intergenic 65.0%
TGGCGACGGTTGTGGGTGGT+GGG + chr4_3:58332607-58332626 None:intergenic 65.0%
AAGGTGGCGACGGTTGTGGG+TGG + chr4_3:58332611-58332630 None:intergenic 65.0%
GAGGAAGGTGGCGACGGTTG+TGG + chr4_3:58332615-58332634 None:intergenic 65.0%
GAGGGAAGGGATGTCGGCGT+TGG + chr4_3:58332738-58332757 None:intergenic 65.0%
!! GGGCGGAGGGGAGTTTTGTG+AGG + chr4_3:58332757-58332776 None:intergenic 65.0%
GTCGTAGCCACGGCGGAAAG+CGG + chr4_3:58333008-58333027 None:intergenic 65.0%
TTGGGTGACCCGGGTCAACC+CGG - chr4_3:58333298-58333317 Msa0651060:intron 65.0%
GATGCGGGTCCCATTGCCTG+TGG + chr4_3:58334173-58334192 None:intergenic 65.0%
CAGGCAATGGGACCCGCATC+AGG - chr4_3:58334173-58334192 Msa0651060:intron 65.0%
GGGTCCTGCATCTGAGCCCA+CGG - chr4_3:58334235-58334254 Msa0651060:intron 65.0%
CTCTGATGGCCCCATTGCCG+TGG + chr4_3:58334255-58334274 None:intergenic 65.0%
CAAGGACCACTGTGACGGCG+AGG + chr4_3:58334683-58334702 None:intergenic 65.0%
GGGAGTCAAACCCAGGTCGC+TGG + chr4_3:58336313-58336332 None:intergenic 65.0%
!! CGACGGTTGTGGGTGGTGGG+AGG + chr4_3:58332604-58332623 None:intergenic 70.0%
GTGGCGACGGTTGTGGGTGG+TGG + chr4_3:58332608-58332627 None:intergenic 70.0%
! GTTGGCGAAGGCGCGGAGGA+TGG + chr4_3:58332687-58332706 None:intergenic 70.0%
!! TGGTGTTGGCGAAGGCGCGG+AGG + chr4_3:58332691-58332710 None:intergenic 70.0%
GTAGCCACGGCGGAAAGCGG+CGG + chr4_3:58333005-58333024 None:intergenic 70.0%
AGCGGCGGAGCTGGGTGGTG+AGG + chr4_3:58332990-58333009 None:intergenic 75.0%
CGGAAAGCGGCGGAGCTGGG+TGG + chr4_3:58332995-58333014 None:intergenic 75.0%
CGGCGGAAAGCGGCGGAGCT+GGG + chr4_3:58332998-58333017 None:intergenic 75.0%
ACGGCGGAAAGCGGCGGAGC+TGG + chr4_3:58332999-58333018 None:intergenic 75.0%
! AGCTCCGCCGCTTTCCGCCG+TGG - chr4_3:58332998-58333017 Msa0651060:intron 75.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 58332445 58336895 58332445 ID=Msa0651060;Name=Msa0651060
chr4_3 mRNA 58332445 58336895 58332445 ID=Msa0651060-mRNA-1;Parent=Msa0651060;Name=Msa0651060-mRNA-1;_AED=0.01;_eAED=0.01;_QI=46|1|1|1|0.5|0.66|3|197|523
chr4_3 exon 58332445 58332802 58332445 ID=Msa0651060-mRNA-1:exon:15445;Parent=Msa0651060-mRNA-1
chr4_3 exon 58334807 58335164 58334807 ID=Msa0651060-mRNA-1:exon:15444;Parent=Msa0651060-mRNA-1
chr4_3 exon 58335797 58336895 58335797 ID=Msa0651060-mRNA-1:exon:15443;Parent=Msa0651060-mRNA-1
chr4_3 five_prime_UTR 58336850 58336895 58336850 ID=Msa0651060-mRNA-1:five_prime_utr;Parent=Msa0651060-mRNA-1
chr4_3 CDS 58335797 58336849 58335797 ID=Msa0651060-mRNA-1:cds;Parent=Msa0651060-mRNA-1
chr4_3 CDS 58334807 58335164 58334807 ID=Msa0651060-mRNA-1:cds;Parent=Msa0651060-mRNA-1
chr4_3 CDS 58332642 58332802 58332642 ID=Msa0651060-mRNA-1:cds;Parent=Msa0651060-mRNA-1
chr4_3 three_prime_UTR 58332445 58332641 58332445 ID=Msa0651060-mRNA-1:three_prime_utr;Parent=Msa0651060-mRNA-1
Gene Sequence

>Msa0651060

ATGGCAGTTCCTTTTCACTTACTTCTTCTTCTTCTTCTCCTTCTCTCAACTTCCAACTTCTCCTCCGCCACCTACAACATCGGCGTCAACTACGGCACCATCGCCGACAACCTCCCACCACCCACAACCGTCGCCACCTTCCTCAAAACCCAAACCACAATCACCCACATTAAAATCTTCGACACAAACTCTTCCATCCTCCGCGCCTTCGCCAACACCAACATCTCCGTCACCGTAACCGTCTCCAACGCCGACATCCCTTCCCTCACAAAACTCCCCTCCGCCCAACAATGGATAACCACCAACATCCTCCCTTACCATCCCAAAACCATCTTCAACCGTATCGCCGTCGGTAACGAAATCCTCGCAACTTCAGACAAAACCTTAATAGCACACATTCTTCCCGCCATGAATGCACTTCATCAAGCTCTCACTCTTTCAAATCTCACTCACATTCAAATCACATCTCCTAACTCACTCGGCATTCTCTCTTCATCCTCACCACCCAGCTCCGCCGCTTTCCGCCGTGGCTACGACGTTACCATCTTCACTCCCATACTCAAATTCCACCGTGAAACTAAATCTCCTTTCATGGTTAACCCGTATCCGTTTTTCGGTATTTCATCAAACCAACCCGACGCACTTAACTACGCTTTGTTTAAACCAAACGGTGGCGTTTTTGATAAAGCTACTGGAATAAACTACACCAACATGTTTGACGCTCAAATGGATGCGGTTTATTCGGCGATGAAGAAAGTGGGTTATGGTGACGTGGATTTGGTTATTGGAGAAACGGGTTGGCCTTCTTTGGGTGACCCGGGTCAACCCGGTGTGAGTTTGGAAAATGCAGTTTCTTATAATGGGAATCTTATTAAGCATGTTAATTCTGGGAAAGGAACTCCTTTGATGCCTAATAGAACCTTTGAGACTTACATTTTCTCATTGTTTAATGAGAATCTTAAACCTACTATTTCGGAGCAGAATTACGGGTTGTTTAAACCGGATCTTACACCGGTTTATGACGTTGGGGTTTTAACCCAAAAACATCAACAGGCAATGGGACCCGCATCAGGGCCAACAGCAATGGGACCCGCATCAGGGCCAACAGCAATGGGTCCTGCATCTGAGCCCACGGCAATGGGGCCATCAGAGTCACCGGAATCGTCTCCTTCAAAGAAATGGTGCGTGCCAAAGACGAATGCTAGTGAGAAAGCGTTGCAGGCAAACATTGACTATGTGTGCAGCCATGGGATAGATTGTGGGCCTATAAAGAATGGTGGGCCGTGTTATAAGCCCGATTCACTGAGGTCCCATGCGGCCTACGCCATGAATGCATATTATCAGAAATCTGGTCACCACGATTCTGATTGTGATTTTGGACACACTGGAGTCATTACTTACACAGACCCTAGTTCTGAGACATGTAAGTTTCCATATGCAGCTACAAGTTCAGGGCCAAATGTCAAAAAGCCTGATACAGATGGTGGCTCACTCAAATCTGCCACTTCCAAACTTAGATTATATCACTTCTTATTTTATCTTCAATTTCTTATTTTTCTCTGTTTTCTTTAA
Protein sequence

>Msa0651060

MAVPFHLLLLLLLLLSTSNFSSATYNIGVNYGTIADNLPPPTTVATFLKTQTTITHIKIFDTNSSILRAFANTNISVTVTVSNADIPSLTKLPSAQQWITTNILPYHPKTIFNRIAVGNEILATSDKTLIAHILPAMNALHQALTLSNLTHIQITSPNSLGILSSSSPPSSAAFRRGYDVTIFTPILKFHRETKSPFMVNPYPFFGISSNQPDALNYALFKPNGGVFDKATGINYTNMFDAQMDAVYSAMKKVGYGDVDLVIGETGWPSLGDPGQPGVSLENAVSYNGNLIKHVNSGKGTPLMPNRTFETYIFSLFNENLKPTISEQNYGLFKPDLTPVYDVGVLTQKHQQAMGPASGPTAMGPASGPTAMGPASEPTAMGPSESPESSPSKKWCVPKTNASEKALQANIDYVCSHGIDCGPIKNGGPCYKPDSLRSHAAYAMNAYYQKSGHHDSDCDFGHTGVITYTDPSSETCKFPYAATSSGPNVKKPDTDGGSLKSATSKLRLYHFLFYLQFLIFLCFL*