Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0697550 | XP_024629129.1 | 83.740 | 246 | 22 | 1 | 31 | 258 | 8 | 253 | 7.63e-142 | 414 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0697550 | sp|Q8RXJ0|NUF2_ARATH | 45.387 | 271 | 127 | 3 | 1 | 252 | 1 | 269 | 2.23e-66 | 219 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0697550 | A0A396GTH7 | 83.740 | 246 | 22 | 1 | 31 | 258 | 8 | 253 | 3.64e-142 | 414 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0657680 | Msa0697550 | 0.817182 | 3.766028e-52 | -8.615850e-47 |
| Msa0697550 | Msa1438280 | 0.804073 | 2.572999e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0697550 | MtrunA17_Chr8g0380701 | 83.740 | 246 | 22 | 1 | 31 | 258 | 8 | 253 | 7.02e-146 | 414 |
| Msa0697550 | MtrunA17_Chr8g0380721 | 70.956 | 272 | 59 | 2 | 1 | 252 | 3 | 274 | 5.34e-131 | 382 |
| Msa0697550 | MtrunA17_Chr4g0025021 | 66.142 | 127 | 39 | 2 | 1 | 124 | 1 | 126 | 2.89e-53 | 173 |
| Msa0697550 | MtrunA17_Chr4g0025011 | 75.926 | 108 | 26 | 0 | 124 | 231 | 44 | 151 | 2.10e-47 | 158 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0697550 | AT1G61000.1 | 45.387 | 271 | 127 | 3 | 1 | 252 | 1 | 269 | 2.27e-67 | 219 |
Find 92 sgRNAs with CRISPR-Local
Find 294 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGACATCTGTTTGTTGTTC+AGG | 0.210075 | 4_4:+67603118 | None:intergenic |
| TTTAGGAATTGAACTATTTC+CGG | 0.233150 | 4_4:+67604057 | None:intergenic |
| CCACAAATGTTCGATTATTC+CGG | 0.257411 | 4_4:+67604203 | None:intergenic |
| GTCAAATCCAGCTACTTTAA+TGG | 0.261659 | 4_4:+67599550 | None:intergenic |
| AAACTTTACACGTGTGTCTT+AGG | 0.283307 | 4_4:+67599424 | None:intergenic |
| CTACGATTTCTACCGGAGTT+TGG | 0.305203 | 4_4:+67599467 | None:intergenic |
| AGTAGCTGGATTTGACAATA+TGG | 0.313329 | 4_4:-67599543 | Msa0697550:CDS |
| ATATGGATTCCATTTAACTA+TGG | 0.327768 | 4_4:-67599526 | Msa0697550:exon |
| TTCTCAACTTCATATTTCAT+AGG | 0.333718 | 4_4:-67599336 | Msa0697550:three_prime_UTR |
| AAGCTTAGTCCATAGTTAAA+TGG | 0.349716 | 4_4:+67599517 | None:intergenic |
| TTGTTGTAAAGCTTGATAAC+AGG | 0.354857 | 4_4:+67603765 | None:intergenic |
| TGGCAATTTGAAAGTCGTTT+AGG | 0.365645 | 4_4:+67604040 | None:intergenic |
| AACTCGGTTCGACGAGGATC+AGG | 0.373508 | 4_4:+67603672 | None:intergenic |
| ATTTCCGGCCGCCGTAGCCT+TGG | 0.374553 | 4_4:+67604072 | None:intergenic |
| AATCCTATCCTCTTTGATCT+TGG | 0.380306 | 4_4:+67603345 | None:intergenic |
| CACAAATGTTCGATTATTCC+GGG | 0.387009 | 4_4:+67604204 | None:intergenic |
| CCACCCAAGGCTACGGCGGC+CGG | 0.400113 | 4_4:-67604076 | Msa0697550:CDS |
| TTTCCGGCCGCCGTAGCCTT+GGG | 0.425723 | 4_4:+67604073 | None:intergenic |
| GTCGCGGTTCGACATTTCTT+CGG | 0.430403 | 4_4:+67604098 | None:intergenic |
| AACATGTCAGTCGGTGGTTG+TGG | 0.434349 | 4_4:-67599369 | Msa0697550:three_prime_UTR |
| ACCGATCCAACGTGAAGATC+AGG | 0.435005 | 4_4:+67603789 | None:intergenic |
| CAGGATTCTCAAGATGCTCT+AGG | 0.447236 | 4_4:+67603808 | None:intergenic |
| AAGAGAGATGCCTTATGTTC+AGG | 0.450527 | 4_4:-67603184 | Msa0697550:CDS |
| AACTGTGGAAATGGATGATA+AGG | 0.455579 | 4_4:-67603064 | Msa0697550:intron |
| GACATTTCCAACCCTAAAAC+CGG | 0.461248 | 4_4:-67604003 | Msa0697550:CDS |
| TCTCAACTTCATATTTCATA+GGG | 0.467385 | 4_4:-67599335 | Msa0697550:three_prime_UTR |
| CCGGAATAATCGAACATTTG+TGG | 0.469962 | 4_4:-67604203 | Msa0697550:five_prime_UTR |
| GAAGGAGAAAACTGTGGAAA+TGG | 0.471678 | 4_4:-67603073 | Msa0697550:CDS |
| GCATCCACCTCCTGAACATA+AGG | 0.477376 | 4_4:+67603174 | None:intergenic |
| TATTGAAGAAATCAACACTT+TGG | 0.480199 | 4_4:-67603380 | Msa0697550:intron |
| CAAGCTTTACAACAAGATCA+AGG | 0.491392 | 4_4:-67603757 | Msa0697550:CDS |
| GACTGATTTGAAGAAGTTGA+AGG | 0.499065 | 4_4:-67603091 | Msa0697550:CDS |
| AGTGCGACCATTAAAGTAGC+TGG | 0.502330 | 4_4:-67599557 | Msa0697550:CDS |
| GCTGTGACATTGAAATAAGA+AGG | 0.503399 | 4_4:-67600403 | Msa0697550:CDS |
| ATTGCACATGCGATTGAAAG+TGG | 0.511159 | 4_4:-67599587 | Msa0697550:CDS |
| TACACGTGTGTCTTAGGCTA+AGG | 0.512094 | 4_4:+67599430 | None:intergenic |
| TAAACGCCACCGTGCATCAC+GGG | 0.517393 | 4_4:-67604166 | Msa0697550:intron |
| CAAAGAGGATAGGATTATGC+AGG | 0.519877 | 4_4:-67603338 | Msa0697550:intron |
| ACCGCGACCACCCAAGGCTA+CGG | 0.522586 | 4_4:-67604083 | Msa0697550:CDS |
| GCCGTAGCCTTGGGTGGTCG+CGG | 0.528593 | 4_4:+67604082 | None:intergenic |
| ACAGCTCTTTGATTCCATCT+CGG | 0.529333 | 4_4:+67600421 | None:intergenic |
| TGCACGGTGGCGTTTACAGC+GGG | 0.531326 | 4_4:+67604173 | None:intergenic |
| GGAAGGGATGAAGAAGCAGT+TGG | 0.531481 | 4_4:-67600501 | Msa0697550:CDS |
| TGAGGATGTGAGTGTAAAGA+TGG | 0.535763 | 4_4:+67603971 | None:intergenic |
| TGTTCAGGAGGTGGATGCAC+AGG | 0.546856 | 4_4:-67603169 | Msa0697550:CDS |
| TCCTGATCTTCACGTTGGAT+CGG | 0.546920 | 4_4:-67603790 | Msa0697550:CDS |
| GATGATAACGTGCTCAACAT+TGG | 0.552257 | 4_4:+67599489 | None:intergenic |
| AATGTCGTTCTCTGTAACGG+TGG | 0.556631 | 4_4:+67604020 | None:intergenic |
| ACTTTCAATCGCATGTGCAA+TGG | 0.558375 | 4_4:+67599589 | None:intergenic |
| TCCTCAGTTGAGCTTATGGA+AGG | 0.559022 | 4_4:-67600518 | Msa0697550:intron |
| GGTAAATAGTAGAATTACCT+TGG | 0.560260 | 4_4:-67600045 | Msa0697550:CDS |
| GAGCCAAGATCAAAGAGGAT+AGG | 0.561181 | 4_4:-67603348 | Msa0697550:CDS |
| GGAAATGTCGTTCTCTGTAA+CGG | 0.561809 | 4_4:+67604017 | None:intergenic |
| TGAAGAATGCAAAGAAGCAA+GGG | 0.568057 | 4_4:-67603208 | Msa0697550:CDS |
| TGTTATGTTATAGTTGACGT+TGG | 0.570121 | 4_4:-67603235 | Msa0697550:intron |
| TGTCGAACCGCGACCACCCA+AGG | 0.574682 | 4_4:-67604089 | Msa0697550:CDS |
| GATGCCTTATGTTCAGGAGG+TGG | 0.577640 | 4_4:-67603178 | Msa0697550:CDS |
| ATTCGCACTACGATTTCTAC+CGG | 0.579364 | 4_4:+67599460 | None:intergenic |
| AGGATTCTCAAGATGCTCTA+GGG | 0.582230 | 4_4:+67603809 | None:intergenic |
| GAGAATCCTGATCTTCACGT+TGG | 0.583311 | 4_4:-67603795 | Msa0697550:CDS |
| TTGAAGAATGCAAAGAAGCA+AGG | 0.585930 | 4_4:-67603209 | Msa0697550:CDS |
| TTTGAAAGTAGAAAATATCC+CGG | 0.591716 | 4_4:-67604222 | None:intergenic |
| AAAGAAATTAGCTCAAGAGA+AGG | 0.593070 | 4_4:-67601947 | Msa0697550:CDS |
| ATAACGTGCTCAACATTGGA+TGG | 0.593412 | 4_4:+67599493 | None:intergenic |
| TCATATTTCATAGGGAAACA+AGG | 0.595680 | 4_4:-67599327 | Msa0697550:three_prime_UTR |
| TTACAATTGACAGGTGGATG+CGG | 0.596345 | 4_4:-67600066 | Msa0697550:intron |
| GTAAACGCCACCGTGCATCA+CGG | 0.602884 | 4_4:-67604167 | Msa0697550:five_prime_UTR |
| GTAAAGATGGAAAACGACGC+CGG | 0.603830 | 4_4:+67603984 | None:intergenic |
| CCGGCCGCCGTAGCCTTGGG+TGG | 0.607394 | 4_4:+67604076 | None:intergenic |
| GAAAAGATAGTTACTCGGGG+AGG | 0.608338 | 4_4:+67603941 | None:intergenic |
| TGTTGAGGCTGAGTATTCAA+AGG | 0.614515 | 4_4:-67600375 | Msa0697550:intron |
| TGTTGTAAAGCTTGATAACA+GGG | 0.622146 | 4_4:+67603766 | None:intergenic |
| GAAGTTGAAGGAGAAAACTG+TGG | 0.622296 | 4_4:-67603079 | Msa0697550:CDS |
| GCGACCACCCAAGGCTACGG+CGG | 0.623441 | 4_4:-67604080 | Msa0697550:CDS |
| ACAACAAACAGATGTCATTG+AGG | 0.632333 | 4_4:-67603113 | Msa0697550:CDS |
| CCTCAGTTGAGCTTATGGAA+GGG | 0.637886 | 4_4:-67600517 | Msa0697550:intron |
| CGAGAGAGCCAAGATCAAAG+AGG | 0.639501 | 4_4:-67603353 | Msa0697550:CDS |
| TTGCACATGCGATTGAAAGT+GGG | 0.640805 | 4_4:-67599586 | Msa0697550:CDS |
| AAATTGAATGAATATTTCTG+AGG | 0.647200 | 4_4:+67603711 | None:intergenic |
| AGAAGGCAAGAAACGCTGAA+AGG | 0.647873 | 4_4:-67601930 | Msa0697550:CDS |
| TGCACATCTAACAAACATGA+CGG | 0.649069 | 4_4:+67599395 | None:intergenic |
| GCACGTTATCATCCAAACTC+CGG | 0.660219 | 4_4:-67599479 | Msa0697550:three_prime_UTR |
| AGAGATGCCTTATGTTCAGG+AGG | 0.660324 | 4_4:-67603181 | Msa0697550:CDS |
| ACTCGGGGAGGAGATAGTTG+AGG | 0.661042 | 4_4:+67603953 | None:intergenic |
| TGTGAGTAACCCGTGATGCA+CGG | 0.663073 | 4_4:+67604157 | None:intergenic |
| TGTGCACTTAACATGTCAGT+CGG | 0.663538 | 4_4:-67599378 | Msa0697550:three_prime_UTR |
| AATAAGAAGGAGACATGTTG+AGG | 0.665309 | 4_4:-67600390 | Msa0697550:CDS |
| ATGCACGGTGGCGTTTACAG+CGG | 0.684810 | 4_4:+67604172 | None:intergenic |
| GAAGAATGCAAAGAAGCAAG+GGG | 0.687158 | 4_4:-67603207 | Msa0697550:CDS |
| AGAAACTGAGAAGAGCGCCG+AGG | 0.742803 | 4_4:+67603646 | None:intergenic |
| GCACTTAACATGTCAGTCGG+TGG | 0.744445 | 4_4:-67599375 | Msa0697550:three_prime_UTR |
| GAGTAACCCGTGATGCACGG+TGG | 0.770874 | 4_4:+67604160 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATCTTATTTATTTATATAA+AGG | + | chr4_4:67601741-67601760 | None:intergenic | 10.0% |
| !!! | ATTTTCAACATTATTTATAT+TGG | - | chr4_4:67601924-67601943 | Msa0697550:intron | 10.0% |
| !!! | AAAAACTTTTTTTGTTTTTT+TGG | - | chr4_4:67602254-67602273 | Msa0697550:intron | 10.0% |
| !!! | AGTAATTGTAAATAATTTTT+AGG | - | chr4_4:67604178-67604197 | Msa0697550:five_prime_UTR | 10.0% |
| !! | ATATTAAAAAACTGACAATT+AGG | + | chr4_4:67600024-67600043 | None:intergenic | 15.0% |
| !! | TAACATGGAAAAAAAAATAA+TGG | + | chr4_4:67600946-67600965 | None:intergenic | 15.0% |
| !! | ATGATATCATATATGAAAAA+TGG | - | chr4_4:67601232-67601251 | Msa0697550:intron | 15.0% |
| !! | TAAGGAAATCAAATTTAAAT+AGG | + | chr4_4:67601464-67601483 | None:intergenic | 15.0% |
| !!! | TTTTACTTTTTCTGTTTTTT+TGG | - | chr4_4:67603663-67603682 | Msa0697550:CDS | 15.0% |
| !!! | AAATTGAATGAATATTTCTG+AGG | + | chr4_4:67599749-67599768 | None:intergenic | 20.0% |
| !! | AGTTATTCAATGAATTGAAA+AGG | - | chr4_4:67599919-67599938 | Msa0697550:intron | 20.0% |
| !!! | TTTTTTTTTTTCCTCTCTTT+TGG | + | chr4_4:67599989-67600008 | None:intergenic | 20.0% |
| !!! | ATTGTCAGTTTTTTAATATC+AGG | - | chr4_4:67600025-67600044 | Msa0697550:CDS | 20.0% |
| !! | AAATCTATTGCATATACTAT+TGG | + | chr4_4:67600518-67600537 | None:intergenic | 20.0% |
| !! | TCACTATTAATTTCTTTGTT+TGG | - | chr4_4:67600684-67600703 | Msa0697550:intron | 20.0% |
| !! | AAAAATACATGTACTTTATC+AGG | + | chr4_4:67600888-67600907 | None:intergenic | 20.0% |
| !! | GAATATACAAAAAACTAACA+TGG | + | chr4_4:67600961-67600980 | None:intergenic | 20.0% |
| !!! | ATATTGTATTTGCGTTTTAT+TGG | - | chr4_4:67601071-67601090 | Msa0697550:intron | 20.0% |
| !!! | ACATTGTTAGTTTGAAATAA+TGG | - | chr4_4:67601138-67601157 | Msa0697550:intron | 20.0% |
| !! | ATATCATATATGAAAAATGG+CGG | - | chr4_4:67601235-67601254 | Msa0697550:intron | 20.0% |
| !!! | TTCTAACAAACACAATATTT+TGG | + | chr4_4:67601639-67601658 | None:intergenic | 20.0% |
| !! | CAAAATTATCTATATCTCTT+CGG | - | chr4_4:67602010-67602029 | Msa0697550:intron | 20.0% |
| !! | AAAATTATCTATATCTCTTC+GGG | - | chr4_4:67602011-67602030 | Msa0697550:intron | 20.0% |
| !!! | TTTGTTTTTTTGGATTTGAA+TGG | - | chr4_4:67602264-67602283 | Msa0697550:intron | 20.0% |
| !!! | AAAGAATCATAAAGCATTAA+AGG | - | chr4_4:67602433-67602452 | Msa0697550:intron | 20.0% |
| !! | GAAATCATAACAAAATAACA+TGG | + | chr4_4:67602847-67602866 | None:intergenic | 20.0% |
| !! | TTTAGTTATGGATGTATTTA+GGG | + | chr4_4:67603153-67603172 | None:intergenic | 20.0% |
| !!! | ATTTTTTGTTTACAATTGAC+AGG | - | chr4_4:67603382-67603401 | Msa0697550:intron | 20.0% |
| !! | AAAAATCTTAATACCCTATT+TGG | - | chr4_4:67603541-67603560 | Msa0697550:intron | 20.0% |
| !!! | AATAATTGACTTATTATGCT+TGG | - | chr4_4:67603816-67603835 | Msa0697550:CDS | 20.0% |
| ! | TTTAGGAATTGAACTATTTC+CGG | + | chr4_4:67599403-67599422 | None:intergenic | 25.0% |
| ! | AAGAGAAAAACAAAGTGAAA+AGG | + | chr4_4:67599584-67599603 | None:intergenic | 25.0% |
| !! | AAATTTTTGCTTATAAGTGC+CGG | - | chr4_4:67599943-67599962 | Msa0697550:intron | 25.0% |
| !! | TTCTTCAATAATTGGTGATA+TGG | + | chr4_4:67600067-67600086 | None:intergenic | 25.0% |
| !!! | GTGTTGATTTCTTCAATAAT+TGG | + | chr4_4:67600075-67600094 | None:intergenic | 25.0% |
| ! | TATTGAAGAAATCAACACTT+TGG | - | chr4_4:67600077-67600096 | Msa0697550:intron | 25.0% |
| !! | TATAATTTGTATGTGTGTGT+TGG | - | chr4_4:67600174-67600193 | Msa0697550:intron | 25.0% |
| ! | TCATGCTAAGTTTCTATTAT+TGG | + | chr4_4:67600461-67600480 | None:intergenic | 25.0% |
| ! | CATAATCTTACTTGATATTG+AGG | - | chr4_4:67600488-67600507 | Msa0697550:CDS | 25.0% |
| ! | TATGCAATAGATTTCATTAG+AGG | - | chr4_4:67600524-67600543 | Msa0697550:intron | 25.0% |
| ! | TAGTATATTAATTCTTGTGC+TGG | - | chr4_4:67600747-67600766 | Msa0697550:intron | 25.0% |
| ! | ACACAAAATGTATTATGTCA+GGG | + | chr4_4:67601101-67601120 | None:intergenic | 25.0% |
| ! | AACACAAAATGTATTATGTC+AGG | + | chr4_4:67601102-67601121 | None:intergenic | 25.0% |
| !!! | ATTTTGTGTTTTTACCACAA+TGG | - | chr4_4:67601112-67601131 | Msa0697550:intron | 25.0% |
| ! | AACTAAATATTGAAAGCAAG+TGG | - | chr4_4:67601317-67601336 | Msa0697550:intron | 25.0% |
| !!! | ACAAACACAATATTTTGGAA+TGG | + | chr4_4:67601634-67601653 | None:intergenic | 25.0% |
| ! | TTGTTTCAATTTCAAAACAC+TGG | - | chr4_4:67601665-67601684 | Msa0697550:intron | 25.0% |
| ! | TGTTTCAATTTCAAAACACT+GGG | - | chr4_4:67601666-67601685 | Msa0697550:intron | 25.0% |
| !!! | AGATGATTTGTTTTTACGAT+TGG | - | chr4_4:67601756-67601775 | Msa0697550:intron | 25.0% |
| !! | AATTGAATTTTCCCTTGTAA+TGG | - | chr4_4:67601814-67601833 | Msa0697550:intron | 25.0% |
| !! | ATTGAATTTTCCCTTGTAAT+GGG | - | chr4_4:67601815-67601834 | Msa0697550:intron | 25.0% |
| ! | GAACAAACATGAACATAAAA+TGG | - | chr4_4:67601845-67601864 | Msa0697550:intron | 25.0% |
| ! | ATTGAATGACAACATCTATA+AGG | + | chr4_4:67601906-67601925 | None:intergenic | 25.0% |
| ! | TACATTATGGAATGAGTAAA+TGG | + | chr4_4:67601981-67602000 | None:intergenic | 25.0% |
| ! | TTTGTTTGCAGTTTACATTA+TGG | + | chr4_4:67601994-67602013 | None:intergenic | 25.0% |
| ! | AAATTATCTATATCTCTTCG+GGG | - | chr4_4:67602012-67602031 | Msa0697550:intron | 25.0% |
| !! | ATTTTCTTGTATACCTGAAA+AGG | + | chr4_4:67602098-67602117 | None:intergenic | 25.0% |
| !!! | TTTTCCTTGTTTGATATACA+GGG | + | chr4_4:67602238-67602257 | None:intergenic | 25.0% |
| !!! | TTTTTCCTTGTTTGATATAC+AGG | + | chr4_4:67602239-67602258 | None:intergenic | 25.0% |
| ! | TTCAATAGATTTAGCTGAAT+AGG | + | chr4_4:67602414-67602433 | None:intergenic | 25.0% |
| !!! | CAAAGGTATCTTTTATTAAG+CGG | - | chr4_4:67603099-67603118 | Msa0697550:CDS | 25.0% |
| ! | CTTTAGTTATGGATGTATTT+AGG | + | chr4_4:67603154-67603173 | None:intergenic | 25.0% |
| !! | AGTAACGTTTTCTTTAGTTA+TGG | + | chr4_4:67603165-67603184 | None:intergenic | 25.0% |
| !!! | TGAAATTTTGAAGCCAAATA+GGG | + | chr4_4:67603557-67603576 | None:intergenic | 25.0% |
| !!! | TTGAAATTTTGAAGCCAAAT+AGG | + | chr4_4:67603558-67603577 | None:intergenic | 25.0% |
| ! | TTGGCTTCAAAATTTCAAAT+TGG | - | chr4_4:67603560-67603579 | Msa0697550:intron | 25.0% |
| !! | ATTTCCATTTTCCTATTATG+AGG | + | chr4_4:67603593-67603612 | None:intergenic | 25.0% |
| ! | ATATGGATTCCATTTAACTA+TGG | - | chr4_4:67603931-67603950 | Msa0697550:intron | 25.0% |
| ! | TTCTCAACTTCATATTTCAT+AGG | - | chr4_4:67604121-67604140 | Msa0697550:intron | 25.0% |
| ! | TCTCAACTTCATATTTCATA+GGG | - | chr4_4:67604122-67604141 | Msa0697550:intron | 25.0% |
| AAGAGAAAAGATAGTTACTC+GGG | + | chr4_4:67599523-67599542 | None:intergenic | 30.0% | |
| GAAGAGAAAAGATAGTTACT+CGG | + | chr4_4:67599524-67599543 | None:intergenic | 30.0% | |
| !! | TTCTCTTTTTCATTTCTCAC+AGG | - | chr4_4:67599597-67599616 | Msa0697550:CDS | 30.0% |
| !! | TCTCTTTTTCATTTCTCACA+GGG | - | chr4_4:67599598-67599617 | Msa0697550:CDS | 30.0% |
| ! | TGTTGTAAAGCTTGATAACA+GGG | + | chr4_4:67599694-67599713 | None:intergenic | 30.0% |
| ! | TTGTTGTAAAGCTTGATAAC+AGG | + | chr4_4:67599695-67599714 | None:intergenic | 30.0% |
| TGTTATGTTATAGTTGACGT+TGG | - | chr4_4:67600222-67600241 | Msa0697550:intron | 30.0% | |
| CTTGTGTGAATAGTTTATGT+TGG | - | chr4_4:67600615-67600634 | Msa0697550:intron | 30.0% | |
| !!! | ATTAATTCTTGTGCTGGTTT+TGG | - | chr4_4:67600753-67600772 | Msa0697550:intron | 30.0% |
| TATATTCAGCATCAGAAATC+TGG | + | chr4_4:67600809-67600828 | None:intergenic | 30.0% | |
| ! | ACTAACAATGTTTTCCATTG+TGG | + | chr4_4:67601129-67601148 | None:intergenic | 30.0% |
| !! | ATGAGCATGCATTGATTAAA+AGG | + | chr4_4:67601171-67601190 | None:intergenic | 30.0% |
| CACAGGACATTTAGTAAAAA+AGG | + | chr4_4:67601200-67601219 | None:intergenic | 30.0% | |
| ! | TTTTTACTAAATGTCCTGTG+AGG | - | chr4_4:67601200-67601219 | Msa0697550:intron | 30.0% |
| ! | TTTTACTAAATGTCCTGTGA+GGG | - | chr4_4:67601201-67601220 | Msa0697550:intron | 30.0% |
| ! | TTTAGATTTTCTTCCTGTGT+AGG | - | chr4_4:67601413-67601432 | Msa0697550:intron | 30.0% |
| ATAAAATCCTATACCTACAC+AGG | + | chr4_4:67601429-67601448 | None:intergenic | 30.0% | |
| TTTCCTTATCTTGCATAAAG+AGG | - | chr4_4:67601476-67601495 | Msa0697550:intron | 30.0% | |
| TTCCTTATCTTGCATAAAGA+GGG | - | chr4_4:67601477-67601496 | Msa0697550:intron | 30.0% | |
| AAAGAAATTAGCTCAAGAGA+AGG | - | chr4_4:67601510-67601529 | Msa0697550:intron | 30.0% | |
| !!! | ACACAATATTTTGGAATGGA+GGG | + | chr4_4:67601630-67601649 | None:intergenic | 30.0% |
| !!! | AACACAATATTTTGGAATGG+AGG | + | chr4_4:67601631-67601650 | None:intergenic | 30.0% |
| !!! | TGATTTGTTTTTACGATTGG+TGG | - | chr4_4:67601759-67601778 | Msa0697550:intron | 30.0% |
| !!! | GATTTGTTTTTACGATTGGT+GGG | - | chr4_4:67601760-67601779 | Msa0697550:intron | 30.0% |
| !!! | ATTTGTTTTTACGATTGGTG+GGG | - | chr4_4:67601761-67601780 | Msa0697550:intron | 30.0% |
| ! | TTGAATTTTCCCTTGTAATG+GGG | - | chr4_4:67601816-67601835 | Msa0697550:intron | 30.0% |
| TTCTTTAATCCCCATTACAA+GGG | + | chr4_4:67601828-67601847 | None:intergenic | 30.0% | |
| ! | CACTTTATCAATTCCTTTTC+AGG | - | chr4_4:67602082-67602101 | Msa0697550:intron | 30.0% |
| AGTCAAATAACAAGACGATA+GGG | + | chr4_4:67602166-67602185 | None:intergenic | 30.0% | |
| TAAATCATCATGCTAAACGA+AGG | + | chr4_4:67602195-67602214 | None:intergenic | 30.0% | |
| ! | TTTCCTTGTTTGATATACAG+GGG | + | chr4_4:67602237-67602256 | None:intergenic | 30.0% |
| ATTTGAATGGAACACATGAT+GGG | - | chr4_4:67602277-67602296 | Msa0697550:intron | 30.0% | |
| AGATATTCTACTATGATCTG+TGG | - | chr4_4:67602320-67602339 | Msa0697550:intron | 30.0% | |
| GATATTCTACTATGATCTGT+GGG | - | chr4_4:67602321-67602340 | Msa0697550:intron | 30.0% | |
| !!! | TTTTTTACTGTCTAGGTAGT+TGG | + | chr4_4:67603015-67603034 | None:intergenic | 30.0% |
| AGCGGAATATAAATCTCTAA+TGG | - | chr4_4:67603117-67603136 | Msa0697550:CDS | 30.0% | |
| AATCGTGATTAGTATTCGTT+AGG | - | chr4_4:67603300-67603319 | Msa0697550:intron | 30.0% | |
| !! | TTTTGTTTACAATTGACAGG+TGG | - | chr4_4:67603385-67603404 | Msa0697550:intron | 30.0% |
| GGTAAATAGTAGAATTACCT+TGG | - | chr4_4:67603412-67603431 | Msa0697550:intron | 30.0% | |
| TGCTTCCAAAATAGGATAAA+CGG | + | chr4_4:67603511-67603530 | None:intergenic | 30.0% | |
| ! | CATTTTCCTATTATGAGGTA+TGG | + | chr4_4:67603588-67603607 | None:intergenic | 30.0% |
| CATACCTCATAATAGGAAAA+TGG | - | chr4_4:67603586-67603605 | Msa0697550:intron | 30.0% | |
| AAGCTTAGTCCATAGTTAAA+TGG | + | chr4_4:67603943-67603962 | None:intergenic | 30.0% | |
| TCATATTTCATAGGGAAACA+AGG | - | chr4_4:67604130-67604149 | Msa0697550:intron | 30.0% | |
| CACAAATGTTCGATTATTCC+GGG | + | chr4_4:67599256-67599275 | None:intergenic | 35.0% | |
| CCACAAATGTTCGATTATTC+CGG | + | chr4_4:67599257-67599276 | None:intergenic | 35.0% | |
| GTTACTCACACCATTTCAAT+CGG | - | chr4_4:67599313-67599332 | Msa0697550:three_prime_UTR | 35.0% | |
| TGGCAATTTGAAAGTCGTTT+AGG | + | chr4_4:67599420-67599439 | None:intergenic | 35.0% | |
| AGAGAAAAGATAGTTACTCG+GGG | + | chr4_4:67599522-67599541 | None:intergenic | 35.0% | |
| AATAGAAACGAAACGTGTGA+AGG | + | chr4_4:67599559-67599578 | None:intergenic | 35.0% | |
| CAAGCTTTACAACAAGATCA+AGG | - | chr4_4:67599700-67599719 | Msa0697550:intron | 35.0% | |
| GAAGAAGTGAAAGTAACCAA+TGG | + | chr4_4:67599841-67599860 | None:intergenic | 35.0% | |
| ATGTGATGATTATGCAGAAG+TGG | + | chr4_4:67599866-67599885 | None:intergenic | 35.0% | |
| AATCCTATCCTCTTTGATCT+TGG | + | chr4_4:67600115-67600134 | None:intergenic | 35.0% | |
| TTGAAGAATGCAAAGAAGCA+AGG | - | chr4_4:67600248-67600267 | Msa0697550:intron | 35.0% | |
| TGAAGAATGCAAAGAAGCAA+GGG | - | chr4_4:67600249-67600268 | Msa0697550:intron | 35.0% | |
| !! | ATGACATCTGTTTGTTGTTC+AGG | + | chr4_4:67600342-67600361 | None:intergenic | 35.0% |
| ACAACAAACAGATGTCATTG+AGG | - | chr4_4:67600344-67600363 | Msa0697550:intron | 35.0% | |
| !! | GACTGATTTGAAGAAGTTGA+AGG | - | chr4_4:67600366-67600385 | Msa0697550:intron | 35.0% |
| AACTGTGGAAATGGATGATA+AGG | - | chr4_4:67600393-67600412 | Msa0697550:CDS | 35.0% | |
| CTTCTCATCTACTAATCCAA+AGG | + | chr4_4:67600595-67600614 | None:intergenic | 35.0% | |
| ! | TATATTGCAAGCTGCAGTTT+TGG | - | chr4_4:67600654-67600673 | Msa0697550:intron | 35.0% |
| ! | TGGCAACTGATTCTAATGAT+TGG | + | chr4_4:67600926-67600945 | None:intergenic | 35.0% |
| AATATTTGCACAGGCAGATA+GGG | + | chr4_4:67601056-67601075 | None:intergenic | 35.0% | |
| CGCAAATACAATATTTGCAC+AGG | + | chr4_4:67601065-67601084 | None:intergenic | 35.0% | |
| TCATATATGAAAAATGGCGG+TGG | - | chr4_4:67601238-67601257 | Msa0697550:intron | 35.0% | |
| ! | TTTTCTTCCTGTGTAGGTAT+AGG | - | chr4_4:67601419-67601438 | Msa0697550:intron | 35.0% |
| !! | GGGTATTTTAAATATCCACG+AGG | - | chr4_4:67601686-67601705 | Msa0697550:intron | 35.0% |
| CAAAGATAAATCATACCTCG+TGG | + | chr4_4:67601704-67601723 | None:intergenic | 35.0% | |
| TGCATAAATCCAACACAGTT+TGG | + | chr4_4:67601794-67601813 | None:intergenic | 35.0% | |
| GTTCTTTAATCCCCATTACA+AGG | + | chr4_4:67601829-67601848 | None:intergenic | 35.0% | |
| GAGTCAAATAACAAGACGAT+AGG | + | chr4_4:67602167-67602186 | None:intergenic | 35.0% | |
| TTTCCCCTGTATATCAAACA+AGG | - | chr4_4:67602231-67602250 | Msa0697550:intron | 35.0% | |
| GATTTGAATGGAACACATGA+TGG | - | chr4_4:67602276-67602295 | Msa0697550:intron | 35.0% | |
| GATTCTTTAGACCTTCCTAT+AGG | - | chr4_4:67602388-67602407 | Msa0697550:intron | 35.0% | |
| ATTTAGCTGAATAGGCCTAT+AGG | + | chr4_4:67602406-67602425 | None:intergenic | 35.0% | |
| !! | ACTTGATGACGAAGAAGTTA+TGG | - | chr4_4:67602460-67602479 | Msa0697550:intron | 35.0% |
| TTCAACCAAATTGACCTGAA+GGG | + | chr4_4:67602492-67602511 | None:intergenic | 35.0% | |
| TTTCAACCAAATTGACCTGA+AGG | + | chr4_4:67602493-67602512 | None:intergenic | 35.0% | |
| TTCAGGTCAATTTGGTTGAA+AGG | - | chr4_4:67602492-67602511 | Msa0697550:intron | 35.0% | |
| TTGGTTGAAAGGCAAACTAA+AGG | - | chr4_4:67602503-67602522 | Msa0697550:intron | 35.0% | |
| AGTGAAAGGTAATTAGCCAA+CGG | + | chr4_4:67602675-67602694 | None:intergenic | 35.0% | |
| AAAAATCATGCCTCAGTGAA+AGG | + | chr4_4:67602689-67602708 | None:intergenic | 35.0% | |
| TAAACACGTATATGTGTGTG+TGG | - | chr4_4:67602903-67602922 | Msa0697550:intron | 35.0% | |
| AAACACGTATATGTGTGTGT+GGG | - | chr4_4:67602904-67602923 | Msa0697550:intron | 35.0% | |
| !!! | TCTCGGATTTTTTACTGTCT+AGG | + | chr4_4:67603022-67603041 | None:intergenic | 35.0% |
| AGACAGTAAAAAATCCGAGA+TGG | - | chr4_4:67603022-67603041 | Msa0697550:intron | 35.0% | |
| GCTGTGACATTGAAATAAGA+AGG | - | chr4_4:67603054-67603073 | Msa0697550:intron | 35.0% | |
| AATAAGAAGGAGACATGTTG+AGG | - | chr4_4:67603067-67603086 | Msa0697550:CDS | 35.0% | |
| GTTTCAATCTGTGTATGAGA+GGG | - | chr4_4:67603205-67603224 | Msa0697550:CDS | 35.0% | |
| GAGATAAGAAGTAATGTTGC+TGG | + | chr4_4:67603273-67603292 | None:intergenic | 35.0% | |
| AGAATCTGCAACAGAAAAAG+TGG | - | chr4_4:67603439-67603458 | Msa0697550:intron | 35.0% | |
| ATGCGAAGAGATAGAAAAAG+AGG | - | chr4_4:67603478-67603497 | Msa0697550:intron | 35.0% | |
| ! | GAGATAGAAAAAGAGGTATG+TGG | - | chr4_4:67603485-67603504 | Msa0697550:intron | 35.0% |
| TGAAAATCAACATTGCAGTG+TGG | + | chr4_4:67603749-67603768 | None:intergenic | 35.0% | |
| ! | GTCAAATCCAGCTACTTTAA+TGG | + | chr4_4:67603910-67603929 | None:intergenic | 35.0% |
| AGTAGCTGGATTTGACAATA+TGG | - | chr4_4:67603914-67603933 | Msa0697550:intron | 35.0% | |
| AAACTTTACACGTGTGTCTT+AGG | + | chr4_4:67604036-67604055 | None:intergenic | 35.0% | |
| TGCACATCTAACAAACATGA+CGG | + | chr4_4:67604065-67604084 | None:intergenic | 35.0% | |
| CCGGAATAATCGAACATTTG+TGG | - | chr4_4:67599254-67599273 | Msa0697550:three_prime_UTR | 40.0% | |
| GGAAATGTCGTTCTCTGTAA+CGG | + | chr4_4:67599443-67599462 | None:intergenic | 40.0% | |
| GACATTTCCAACCCTAAAAC+CGG | - | chr4_4:67599454-67599473 | Msa0697550:three_prime_UTR | 40.0% | |
| TGAGGATGTGAGTGTAAAGA+TGG | + | chr4_4:67599489-67599508 | None:intergenic | 40.0% | |
| AGGATTCTCAAGATGCTCTA+GGG | + | chr4_4:67599651-67599670 | None:intergenic | 40.0% | |
| TTCTCAGTTTCTGCATCCAT+TGG | - | chr4_4:67599822-67599841 | Msa0697550:intron | 40.0% | |
| CAAAGAGGATAGGATTATGC+AGG | - | chr4_4:67600119-67600138 | Msa0697550:intron | 40.0% | |
| ! | TTGTATGTGTGTGTTGGTAC+TGG | - | chr4_4:67600180-67600199 | Msa0697550:intron | 40.0% |
| GAAGAATGCAAAGAAGCAAG+GGG | - | chr4_4:67600250-67600269 | Msa0697550:intron | 40.0% | |
| AAGAGAGATGCCTTATGTTC+AGG | - | chr4_4:67600273-67600292 | Msa0697550:intron | 40.0% | |
| GAAGTTGAAGGAGAAAACTG+TGG | - | chr4_4:67600378-67600397 | Msa0697550:CDS | 40.0% | |
| GAAGGAGAAAACTGTGGAAA+TGG | - | chr4_4:67600384-67600403 | Msa0697550:CDS | 40.0% | |
| !! | AAGGTGAGTTTGTTGTCTGA+TGG | - | chr4_4:67600412-67600431 | Msa0697550:CDS | 40.0% |
| ATCTACGTGAGCAATTCATG+TGG | - | chr4_4:67600554-67600573 | Msa0697550:intron | 40.0% | |
| TCTACGTGAGCAATTCATGT+GGG | - | chr4_4:67600555-67600574 | Msa0697550:intron | 40.0% | |
| TGAGCAATTCATGTGGGATT+AGG | - | chr4_4:67600561-67600580 | Msa0697550:intron | 40.0% | |
| GGATTAGGACATTGAACCTT+TGG | - | chr4_4:67600576-67600595 | Msa0697550:intron | 40.0% | |
| CAATATTTGCACAGGCAGAT+AGG | + | chr4_4:67601057-67601076 | None:intergenic | 40.0% | |
| AGCCCTCTTTATGCAAGATA+AGG | + | chr4_4:67601482-67601501 | None:intergenic | 40.0% | |
| CTTGGCATAAACTTCAACGA+GGG | + | chr4_4:67601584-67601603 | None:intergenic | 40.0% | |
| TATCTGGTGACAACATACCT+TGG | + | chr4_4:67601602-67601621 | None:intergenic | 40.0% | |
| AATGTCGAATCACTGCAAGA+AGG | - | chr4_4:67602115-67602134 | Msa0697550:intron | 40.0% | |
| AGTTATGGATAAGTCCCTTC+AGG | - | chr4_4:67602475-67602494 | Msa0697550:intron | 40.0% | |
| TAAGTCCCTTCAGGTCAATT+TGG | - | chr4_4:67602484-67602503 | Msa0697550:intron | 40.0% | |
| TGGCTAATTACCTTTCACTG+AGG | - | chr4_4:67602676-67602695 | Msa0697550:intron | 40.0% | |
| ACAGCTCTTTGATTCCATCT+CGG | + | chr4_4:67603039-67603058 | None:intergenic | 40.0% | |
| TGTTGAGGCTGAGTATTCAA+AGG | - | chr4_4:67603082-67603101 | Msa0697550:CDS | 40.0% | |
| ! | CAGATTGAAACCAGTGTTGA+CGG | + | chr4_4:67603196-67603215 | None:intergenic | 40.0% |
| GGTTTCAATCTGTGTATGAG+AGG | - | chr4_4:67603204-67603223 | Msa0697550:CDS | 40.0% | |
| TGTGTATGAGAGGGTTTGAA+GGG | - | chr4_4:67603214-67603233 | Msa0697550:CDS | 40.0% | |
| GTTCAAACCATTCATCCACT+AGG | - | chr4_4:67603242-67603261 | Msa0697550:intron | 40.0% | |
| TTACAATTGACAGGTGGATG+CGG | - | chr4_4:67603391-67603410 | Msa0697550:intron | 40.0% | |
| ! | TGTTGCAGATTCTTTTGCCA+AGG | + | chr4_4:67603432-67603451 | None:intergenic | 40.0% |
| ! | TGTGGCCGTTTATCCTATTT+TGG | - | chr4_4:67603503-67603522 | Msa0697550:intron | 40.0% |
| !! | TCCTATTTTGGAAGCATGTG+TGG | - | chr4_4:67603515-67603534 | Msa0697550:intron | 40.0% |
| ACCACACATGCTTCCAAAAT+AGG | + | chr4_4:67603519-67603538 | None:intergenic | 40.0% | |
| TTGGAGCCATACCTCATAAT+AGG | - | chr4_4:67603579-67603598 | Msa0697550:intron | 40.0% | |
| ACATTGCAGTGTGGTTAACA+AGG | + | chr4_4:67603740-67603759 | None:intergenic | 40.0% | |
| ACTTTCAATCGCATGTGCAA+TGG | + | chr4_4:67603871-67603890 | None:intergenic | 40.0% | |
| ATTGCACATGCGATTGAAAG+TGG | - | chr4_4:67603870-67603889 | Msa0697550:intron | 40.0% | |
| TTGCACATGCGATTGAAAGT+GGG | - | chr4_4:67603871-67603890 | Msa0697550:intron | 40.0% | |
| ATAACGTGCTCAACATTGGA+TGG | + | chr4_4:67603967-67603986 | None:intergenic | 40.0% | |
| ! | GATGATAACGTGCTCAACAT+TGG | + | chr4_4:67603971-67603990 | None:intergenic | 40.0% |
| ATTCGCACTACGATTTCTAC+CGG | + | chr4_4:67604000-67604019 | None:intergenic | 40.0% | |
| TGTGCACTTAACATGTCAGT+CGG | - | chr4_4:67604079-67604098 | Msa0697550:CDS | 40.0% | |
| ! | CTGTGTGATGCCGATTGAAA+TGG | + | chr4_4:67599326-67599345 | None:intergenic | 45.0% |
| AATGTCGTTCTCTGTAACGG+TGG | + | chr4_4:67599440-67599459 | None:intergenic | 45.0% | |
| GTAAAGATGGAAAACGACGC+CGG | + | chr4_4:67599476-67599495 | None:intergenic | 45.0% | |
| GAAAAGATAGTTACTCGGGG+AGG | + | chr4_4:67599519-67599538 | None:intergenic | 45.0% | |
| GAAACGTGTGAAGGAAGGAT+TGG | + | chr4_4:67599550-67599569 | None:intergenic | 45.0% | |
| GAAACGAAACGTGTGAAGGA+AGG | + | chr4_4:67599555-67599574 | None:intergenic | 45.0% | |
| CAGGATTCTCAAGATGCTCT+AGG | + | chr4_4:67599652-67599671 | None:intergenic | 45.0% | |
| GAGAATCCTGATCTTCACGT+TGG | - | chr4_4:67599662-67599681 | Msa0697550:intron | 45.0% | |
| TCCTGATCTTCACGTTGGAT+CGG | - | chr4_4:67599667-67599686 | Msa0697550:intron | 45.0% | |
| !! | TTATAAGTGCCGGAGCTAAC+CGG | - | chr4_4:67599953-67599972 | Msa0697550:intron | 45.0% |
| !!! | CTCTTTTGGCTTACTCGTTC+CGG | + | chr4_4:67599975-67599994 | None:intergenic | 45.0% |
| GAACGAGTAAGCCAAAAGAG+AGG | - | chr4_4:67599975-67599994 | Msa0697550:intron | 45.0% | |
| GAGCCAAGATCAAAGAGGAT+AGG | - | chr4_4:67600109-67600128 | Msa0697550:intron | 45.0% | |
| AGAGATGCCTTATGTTCAGG+AGG | - | chr4_4:67600276-67600295 | Msa0697550:intron | 45.0% | |
| !!! | TTGCAAGCTGCAGTTTTGGA+AGG | - | chr4_4:67600658-67600677 | Msa0697550:intron | 45.0% |
| ATCATCAATTCAGCCCTCAC+AGG | + | chr4_4:67601217-67601236 | None:intergenic | 45.0% | |
| AGAAGGCAAGAAACGCTGAA+AGG | - | chr4_4:67601527-67601546 | Msa0697550:intron | 45.0% | |
| CCTTGGCATAAACTTCAACG+AGG | + | chr4_4:67601585-67601604 | None:intergenic | 45.0% | |
| CCTCGTTGAAGTTTATGCCA+AGG | - | chr4_4:67601582-67601601 | Msa0697550:intron | 45.0% | |
| ATCCAACACAGTTTGGCCAA+AGG | + | chr4_4:67601787-67601806 | None:intergenic | 45.0% | |
| GGTGCAGGTTATACAAGAAC+AGG | - | chr4_4:67602136-67602155 | Msa0697550:intron | 45.0% | |
| AGCTGAATAGGCCTATAGGA+AGG | + | chr4_4:67602402-67602421 | None:intergenic | 45.0% | |
| GGTAATTAGCCAACGGCATT+TGG | + | chr4_4:67602668-67602687 | None:intergenic | 45.0% | |
| TCCATAAGCTCAACTGAGGA+GGG | + | chr4_4:67602939-67602958 | None:intergenic | 45.0% | |
| TTCCATAAGCTCAACTGAGG+AGG | + | chr4_4:67602940-67602959 | None:intergenic | 45.0% | |
| TCCTCAGTTGAGCTTATGGA+AGG | - | chr4_4:67602939-67602958 | Msa0697550:intron | 45.0% | |
| CCTCAGTTGAGCTTATGGAA+GGG | - | chr4_4:67602940-67602959 | Msa0697550:intron | 45.0% | |
| CTTCTTATCTCCGTCAACAC+TGG | - | chr4_4:67603183-67603202 | Msa0697550:CDS | 45.0% | |
| CTGTGTATGAGAGGGTTTGA+AGG | - | chr4_4:67603213-67603232 | Msa0697550:CDS | 45.0% | |
| ! | GGTTTCACCTAGTGGATGAA+TGG | + | chr4_4:67603252-67603271 | None:intergenic | 45.0% |
| !! | ATGTTGCTGGTTTCACCTAG+TGG | + | chr4_4:67603260-67603279 | None:intergenic | 45.0% |
| AGTGCGACCATTAAAGTAGC+TGG | - | chr4_4:67603900-67603919 | Msa0697550:intron | 45.0% | |
| GCACGTTATCATCCAAACTC+CGG | - | chr4_4:67603978-67603997 | Msa0697550:CDS | 45.0% | |
| CTACGATTTCTACCGGAGTT+TGG | + | chr4_4:67603993-67604012 | None:intergenic | 45.0% | |
| TACACGTGTGTCTTAGGCTA+AGG | + | chr4_4:67604030-67604049 | None:intergenic | 45.0% | |
| !!! | ATCTTATTTATTTATATAAA+GGG | + | chr4_4:67601740-67601759 | None:intergenic | 5.0% |
| TGTGAGTAACCCGTGATGCA+CGG | + | chr4_4:67599303-67599322 | None:intergenic | 50.0% | |
| GTCGCGGTTCGACATTTCTT+CGG | + | chr4_4:67599362-67599381 | None:intergenic | 50.0% | |
| !!! | GGAAAACGACGCCGGTTTTA+GGG | + | chr4_4:67599468-67599487 | None:intergenic | 50.0% |
| !!! | TGGAAAACGACGCCGGTTTT+AGG | + | chr4_4:67599469-67599488 | None:intergenic | 50.0% |
| ACCGATCCAACGTGAAGATC+AGG | + | chr4_4:67599671-67599690 | None:intergenic | 50.0% | |
| ! | AGGAAAAACTCGGTTCGACG+AGG | + | chr4_4:67599794-67599813 | None:intergenic | 50.0% |
| ! | CGTCGAACCGAGTTTTTCCT+CGG | - | chr4_4:67599794-67599813 | Msa0697550:intron | 50.0% |
| !! | AAGAGCGCCGAGGAAAAACT+CGG | + | chr4_4:67599804-67599823 | None:intergenic | 50.0% |
| ! | TTACTCGTTCCGGTTAGCTC+CGG | + | chr4_4:67599965-67599984 | None:intergenic | 50.0% |
| CGAGAGAGCCAAGATCAAAG+AGG | - | chr4_4:67600104-67600123 | Msa0697550:intron | 50.0% | |
| GATGCCTTATGTTCAGGAGG+TGG | - | chr4_4:67600279-67600298 | Msa0697550:intron | 50.0% | |
| GCATCCACCTCCTGAACATA+AGG | + | chr4_4:67600286-67600305 | None:intergenic | 50.0% | |
| ATTTGCACAGGCAGATAGGG+TGG | + | chr4_4:67601053-67601072 | None:intergenic | 50.0% | |
| !! | GGAATGGAGGGAGTACTATC+TGG | + | chr4_4:67601618-67601637 | None:intergenic | 50.0% |
| TTTACGATTGGTGGGGCCTT+TGG | - | chr4_4:67601768-67601787 | Msa0697550:intron | 50.0% | |
| ! | GAATCACTGCAAGAAGGTGC+AGG | - | chr4_4:67602121-67602140 | Msa0697550:intron | 50.0% |
| CTTGTGCAAACACGCAATGC+TGG | - | chr4_4:67602532-67602551 | Msa0697550:intron | 50.0% | |
| TCCCTCCTCAGTTGAGCTTA+TGG | - | chr4_4:67602935-67602954 | Msa0697550:intron | 50.0% | |
| CCCTTCCATAAGCTCAACTG+AGG | + | chr4_4:67602943-67602962 | None:intergenic | 50.0% | |
| GGAAGGGATGAAGAAGCAGT+TGG | - | chr4_4:67602956-67602975 | Msa0697550:intron | 50.0% | |
| ATGAGAGGGTTTGAAGGGCA+TGG | - | chr4_4:67603219-67603238 | Msa0697550:CDS | 50.0% | |
| ! | TGAGAGGGTTTGAAGGGCAT+GGG | - | chr4_4:67603220-67603239 | Msa0697550:CDS | 50.0% |
| GCACTTAACATGTCAGTCGG+TGG | - | chr4_4:67604082-67604101 | Msa0697550:CDS | 50.0% | |
| AACATGTCAGTCGGTGGTTG+TGG | - | chr4_4:67604088-67604107 | Msa0697550:CDS | 50.0% | |
| ATGCACGGTGGCGTTTACAG+CGG | + | chr4_4:67599288-67599307 | None:intergenic | 55.0% | |
| GTAAACGCCACCGTGCATCA+CGG | - | chr4_4:67599290-67599309 | Msa0697550:three_prime_UTR | 55.0% | |
| TAAACGCCACCGTGCATCAC+GGG | - | chr4_4:67599291-67599310 | Msa0697550:three_prime_UTR | 55.0% | |
| !!! | AACGACGCCGGTTTTAGGGT+TGG | + | chr4_4:67599464-67599483 | None:intergenic | 55.0% |
| ACTCGGGGAGGAGATAGTTG+AGG | + | chr4_4:67599507-67599526 | None:intergenic | 55.0% | |
| ! | AACTCGGTTCGACGAGGATC+AGG | + | chr4_4:67599788-67599807 | None:intergenic | 55.0% |
| !! | AGAAACTGAGAAGAGCGCCG+AGG | + | chr4_4:67599814-67599833 | None:intergenic | 55.0% |
| TGTTCAGGAGGTGGATGCAC+AGG | - | chr4_4:67600288-67600307 | Msa0697550:intron | 55.0% | |
| CAACGAGGGCAGTCTTCTTG+TGG | + | chr4_4:67601570-67601589 | None:intergenic | 55.0% | |
| GGCCTTTGGCCAAACTGTGT+TGG | - | chr4_4:67601782-67601801 | Msa0697550:intron | 55.0% | |
| TGCACGGTGGCGTTTACAGC+GGG | + | chr4_4:67599287-67599306 | None:intergenic | 60.0% | |
| GAGTAACCCGTGATGCACGG+TGG | + | chr4_4:67599300-67599319 | None:intergenic | 60.0% | |
| TGTCGAACCGCGACCACCCA+AGG | - | chr4_4:67599368-67599387 | Msa0697550:three_prime_UTR | 65.0% | |
| ACCGCGACCACCCAAGGCTA+CGG | - | chr4_4:67599374-67599393 | Msa0697550:three_prime_UTR | 65.0% | |
| TTTCCGGCCGCCGTAGCCTT+GGG | + | chr4_4:67599387-67599406 | None:intergenic | 65.0% | |
| ATTTCCGGCCGCCGTAGCCT+TGG | + | chr4_4:67599388-67599407 | None:intergenic | 65.0% | |
| ! | GCCGTAGCCTTGGGTGGTCG+CGG | + | chr4_4:67599378-67599397 | None:intergenic | 70.0% |
| GCGACCACCCAAGGCTACGG+CGG | - | chr4_4:67599377-67599396 | Msa0697550:three_prime_UTR | 70.0% | |
| CCACCCAAGGCTACGGCGGC+CGG | - | chr4_4:67599381-67599400 | Msa0697550:three_prime_UTR | 75.0% | |
| !! | CCGGCCGCCGTAGCCTTGGG+TGG | + | chr4_4:67599384-67599403 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 67599246 | 67604233 | 67599246 | ID=Msa0697550;Name=Msa0697550 |
| chr4_4 | mRNA | 67599246 | 67604233 | 67599246 | ID=Msa0697550-mRNA-1;Parent=Msa0697550;Name=Msa0697550-mRNA-1;_AED=0.16;_eAED=0.16;_QI=88|0.66|0.4|1|0.55|0.4|10|286|365 |
| chr4_4 | exon | 67599246 | 67599630 | 67599246 | ID=Msa0697550-mRNA-1:exon:19984;Parent=Msa0697550-mRNA-1 |
| chr4_4 | exon | 67599980 | 67600075 | 67599980 | ID=Msa0697550-mRNA-1:exon:19983;Parent=Msa0697550-mRNA-1 |
| chr4_4 | exon | 67600376 | 67600528 | 67600376 | ID=Msa0697550-mRNA-1:exon:19982;Parent=Msa0697550-mRNA-1 |
| chr4_4 | exon | 67601927 | 67601983 | 67601927 | ID=Msa0697550-mRNA-1:exon:19981;Parent=Msa0697550-mRNA-1 |
| chr4_4 | exon | 67602580 | 67602669 | 67602580 | ID=Msa0697550-mRNA-1:exon:19980;Parent=Msa0697550-mRNA-1 |
| chr4_4 | exon | 67603065 | 67603244 | 67603065 | ID=Msa0697550-mRNA-1:exon:19979;Parent=Msa0697550-mRNA-1 |
| chr4_4 | exon | 67603339 | 67603394 | 67603339 | ID=Msa0697550-mRNA-1:exon:19978;Parent=Msa0697550-mRNA-1 |
| chr4_4 | exon | 67603652 | 67603860 | 67603652 | ID=Msa0697550-mRNA-1:exon:19977;Parent=Msa0697550-mRNA-1 |
| chr4_4 | exon | 67603955 | 67604133 | 67603955 | ID=Msa0697550-mRNA-1:exon:19976;Parent=Msa0697550-mRNA-1 |
| chr4_4 | exon | 67604167 | 67604233 | 67604167 | ID=Msa0697550-mRNA-1:exon:19975;Parent=Msa0697550-mRNA-1 |
| chr4_4 | five_prime_UTR | 67604167 | 67604233 | 67604167 | ID=Msa0697550-mRNA-1:five_prime_utr;Parent=Msa0697550-mRNA-1 |
| chr4_4 | five_prime_UTR | 67604113 | 67604133 | 67604113 | ID=Msa0697550-mRNA-1:five_prime_utr;Parent=Msa0697550-mRNA-1 |
| chr4_4 | CDS | 67603955 | 67604112 | 67603955 | ID=Msa0697550-mRNA-1:cds;Parent=Msa0697550-mRNA-1 |
| chr4_4 | CDS | 67603652 | 67603860 | 67603652 | ID=Msa0697550-mRNA-1:cds;Parent=Msa0697550-mRNA-1 |
| chr4_4 | CDS | 67603339 | 67603394 | 67603339 | ID=Msa0697550-mRNA-1:cds;Parent=Msa0697550-mRNA-1 |
| chr4_4 | CDS | 67603065 | 67603244 | 67603065 | ID=Msa0697550-mRNA-1:cds;Parent=Msa0697550-mRNA-1 |
| chr4_4 | CDS | 67602580 | 67602669 | 67602580 | ID=Msa0697550-mRNA-1:cds;Parent=Msa0697550-mRNA-1 |
| chr4_4 | CDS | 67601927 | 67601983 | 67601927 | ID=Msa0697550-mRNA-1:cds;Parent=Msa0697550-mRNA-1 |
| chr4_4 | CDS | 67600376 | 67600528 | 67600376 | ID=Msa0697550-mRNA-1:cds;Parent=Msa0697550-mRNA-1 |
| chr4_4 | CDS | 67599980 | 67600075 | 67599980 | ID=Msa0697550-mRNA-1:cds;Parent=Msa0697550-mRNA-1 |
| chr4_4 | CDS | 67599532 | 67599630 | 67599532 | ID=Msa0697550-mRNA-1:cds;Parent=Msa0697550-mRNA-1 |
| chr4_4 | three_prime_UTR | 67599246 | 67599531 | 67599246 | ID=Msa0697550-mRNA-1:three_prime_utr;Parent=Msa0697550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
