Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1438280 | XP_024629129.1 | 83.740 | 246 | 22 | 1 | 82 | 309 | 8 | 253 | 7.46e-139 | 408 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1438280 | sp|Q8RXJ0|NUF2_ARATH | 45.387 | 271 | 127 | 3 | 52 | 303 | 1 | 269 | 8.52e-64 | 214 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1438280 | A0A396GTH7 | 83.740 | 246 | 22 | 1 | 82 | 309 | 8 | 253 | 3.56e-139 | 408 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024710 | Msa1438280 | 0.809713 | 1.651542e-50 | -8.615850e-47 |
| Msa0035120 | Msa1438280 | 0.816663 | 4.924337e-52 | -8.615850e-47 |
| Msa0093850 | Msa1438280 | 0.809202 | 2.126123e-50 | -8.615850e-47 |
| Msa1348090 | Msa1438280 | 0.815891 | 7.325813e-52 | -8.615850e-47 |
| Msa1365760 | Msa1438280 | 0.801635 | 8.205576e-49 | -8.615850e-47 |
| Msa1369150 | Msa1438280 | 0.817418 | 3.331751e-52 | -8.615850e-47 |
| Msa1418240 | Msa1438280 | 0.807652 | 4.553197e-50 | -8.615850e-47 |
| Msa1425880 | Msa1438280 | 0.816326 | 5.858273e-52 | -8.615850e-47 |
| Msa0619420 | Msa1438280 | 0.800376 | 1.483473e-48 | -8.615850e-47 |
| Msa0657680 | Msa1438280 | 0.823895 | 1.082379e-53 | -8.615850e-47 |
| Msa0677410 | Msa1438280 | 0.810257 | 1.260872e-50 | -8.615850e-47 |
| Msa0697550 | Msa1438280 | 0.804073 | 2.572999e-49 | -8.615850e-47 |
| Msa0715060 | Msa1438280 | 0.811053 | 8.487333e-51 | -8.615850e-47 |
| Msa0737570 | Msa1438280 | 0.802568 | 5.274521e-49 | -8.615850e-47 |
| Msa0144360 | Msa1438280 | 0.820847 | 5.526012e-53 | -8.615850e-47 |
| Msa0174450 | Msa1438280 | 0.812360 | 4.409593e-51 | -8.615850e-47 |
| Msa0221000 | Msa1438280 | 0.816961 | 4.220972e-52 | -8.615850e-47 |
| Msa1253550 | Msa1438280 | 0.810006 | 1.428520e-50 | -8.615850e-47 |
| Msa1276660 | Msa1438280 | 0.813523 | 2.451664e-51 | -8.615850e-47 |
| Msa1298370 | Msa1438280 | 0.803976 | 2.695972e-49 | -8.615850e-47 |
| Msa1320670 | Msa1438280 | 0.802810 | 4.701128e-49 | -8.615850e-47 |
| Msa0378720 | Msa1438280 | 0.831099 | 2.022177e-55 | -8.615850e-47 |
| Msa0430260 | Msa1438280 | 0.800290 | 1.544478e-48 | -8.615850e-47 |
| Msa0435420 | Msa1438280 | 0.807246 | 5.551446e-50 | -8.615850e-47 |
| Msa0451070 | Msa1438280 | 0.805891 | 1.072628e-49 | -8.615850e-47 |
| Msa0474730 | Msa1438280 | 0.815207 | 1.040495e-51 | -8.615850e-47 |
| Msa0479200 | Msa1438280 | 0.814303 | 1.650416e-51 | -8.615850e-47 |
| Msa1027990 | Msa1438280 | 0.802621 | 5.143582e-49 | -8.615850e-47 |
| Msa1076560 | Msa1438280 | 0.806076 | 9.804252e-50 | -8.615850e-47 |
| Msa0247940 | Msa1438280 | 0.806376 | 8.478296e-50 | -8.615850e-47 |
| Msa0292400 | Msa1438280 | 0.815657 | 8.263882e-52 | -8.615850e-47 |
| Msa0300270 | Msa1438280 | 0.821135 | 4.742807e-53 | -8.615850e-47 |
| Msa0300320 | Msa1438280 | 0.840969 | 6.312193e-58 | -8.615850e-47 |
| Msa0337700 | Msa1438280 | 0.824013 | 1.015996e-53 | -8.615850e-47 |
| Msa0341690 | Msa1438280 | 0.807294 | 5.421983e-50 | -8.615850e-47 |
| Msa1208160 | Msa1438280 | 0.804416 | 2.183117e-49 | -8.615850e-47 |
| Msa1208430 | Msa1438280 | 0.812925 | 3.317508e-51 | -8.615850e-47 |
| Msa0500380 | Msa1438280 | 0.800518 | 1.387802e-48 | -8.615850e-47 |
| Msa0861510 | Msa1438280 | 0.821977 | 3.029958e-53 | -8.615850e-47 |
| Msa0861530 | Msa1438280 | 0.815551 | 8.726255e-52 | -8.615850e-47 |
| Msa0861600 | Msa1438280 | 0.827418 | 1.581430e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1438280 | MtrunA17_Chr8g0380701 | 83.740 | 246 | 22 | 1 | 82 | 309 | 8 | 253 | 6.86e-143 | 408 |
| Msa1438280 | MtrunA17_Chr8g0380721 | 70.956 | 272 | 59 | 2 | 52 | 303 | 3 | 274 | 4.00e-128 | 377 |
| Msa1438280 | MtrunA17_Chr8g0380721 | 58.182 | 110 | 45 | 1 | 304 | 412 | 350 | 459 | 6.82e-27 | 112 |
| Msa1438280 | MtrunA17_Chr4g0025021 | 65.354 | 127 | 40 | 2 | 52 | 175 | 1 | 126 | 9.20e-51 | 168 |
| Msa1438280 | MtrunA17_Chr4g0025011 | 73.832 | 107 | 28 | 0 | 175 | 281 | 44 | 150 | 8.21e-44 | 150 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1438280 | AT1G61000.1 | 45.387 | 271 | 127 | 3 | 52 | 303 | 1 | 269 | 8.67e-65 | 214 |
Find 98 sgRNAs with CRISPR-Local
Find 300 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGACATCTGTTTGTTGTTC+AGG | 0.210075 | tig0028533:+36383 | None:intergenic |
| TTTAGGAATTGAACTATTTC+CGG | 0.233150 | tig0028533:+37323 | None:intergenic |
| CCACAAATGTTCGATTATTC+CGG | 0.257411 | tig0028533:+37469 | None:intergenic |
| GTCAAATCCAGCTACTTTAA+TGG | 0.261659 | tig0028533:+32891 | None:intergenic |
| AAACTTTACACGTGTGTCTT+AGG | 0.283307 | tig0028533:+32765 | None:intergenic |
| CTACGATTTCTACCGGAGTT+TGG | 0.305203 | tig0028533:+32808 | None:intergenic |
| AGTAGCTGGATTTGACAATA+TGG | 0.313329 | tig0028533:-32884 | Msa1438280:CDS |
| ATATGGATTCCATTTAACTA+TGG | 0.327768 | tig0028533:-32867 | Msa1438280:exon |
| TTCTCAACTTCATATTTCAT+AGG | 0.333718 | tig0028533:-32677 | Msa1438280:three_prime_UTR |
| AAGCTTAGTCCATAGTTAAA+TGG | 0.349716 | tig0028533:+32858 | None:intergenic |
| TTGTTGTAAAGCTTGATAAC+AGG | 0.354857 | tig0028533:+37031 | None:intergenic |
| TGGCAATTTGAAAGTCGTTT+AGG | 0.365645 | tig0028533:+37306 | None:intergenic |
| AACTCGGTTCGACGAGGATC+AGG | 0.373508 | tig0028533:+36938 | None:intergenic |
| ATTTCCGGCCGCCGTAGCCT+TGG | 0.374553 | tig0028533:+37338 | None:intergenic |
| CACAAATGTTCGATTATTCC+GGG | 0.387009 | tig0028533:+37470 | None:intergenic |
| CCACCCAAGGCTACGGCGGC+CGG | 0.400113 | tig0028533:-37342 | Msa1438280:CDS |
| TTTCCGGCCGCCGTAGCCTT+GGG | 0.425723 | tig0028533:+37339 | None:intergenic |
| GTCGCGGTTCGACATTTCTT+CGG | 0.430403 | tig0028533:+37364 | None:intergenic |
| AACATGTCAGTCGGTGGTTG+TGG | 0.434349 | tig0028533:-32710 | Msa1438280:three_prime_UTR |
| ACCGATCCAACGTGAAGATC+AGG | 0.435005 | tig0028533:+37055 | None:intergenic |
| CAGGATTCTCTAGATGCTCT+AGG | 0.447236 | tig0028533:+37074 | None:intergenic |
| AAGAGAGATGCCTTATGTTC+AGG | 0.450527 | tig0028533:-36449 | Msa1438280:CDS |
| AATCCTATCCTCTTCGATCT+TGG | 0.453367 | tig0028533:+36610 | None:intergenic |
| GAAATATTCATTCAATTTCG+CGG | 0.454407 | tig0028533:-36972 | Msa1438280:CDS |
| AACTGTGGAAATGGATGATA+AGG | 0.455579 | tig0028533:-36329 | Msa1438280:intron |
| GACATTTCCAACCCTAAAAC+CGG | 0.461248 | tig0028533:-37269 | Msa1438280:CDS |
| TCTCAACTTCATATTTCATA+GGG | 0.467385 | tig0028533:-32676 | Msa1438280:three_prime_UTR |
| CCGGAATAATCGAACATTTG+TGG | 0.469962 | tig0028533:-37469 | Msa1438280:CDS |
| GAAGGAGAAAACTGTGGAAA+TGG | 0.471678 | tig0028533:-36338 | Msa1438280:CDS |
| GCATCCACCTCCTGAACATA+AGG | 0.477376 | tig0028533:+36439 | None:intergenic |
| TATTGAAGAAATCAACACTT+TGG | 0.480199 | tig0028533:-36645 | Msa1438280:intron |
| CAAGCTTTACAACAAGATCA+AGG | 0.491392 | tig0028533:-37023 | Msa1438280:CDS |
| CTGTGTGATGGCGATTGAAA+TGG | 0.497253 | tig0028533:+37400 | None:intergenic |
| GACTGATTTGAAGAAGTTGA+AGG | 0.499065 | tig0028533:-36356 | Msa1438280:CDS |
| AGTGCGACCATTAAAGTAGC+TGG | 0.502330 | tig0028533:-32898 | Msa1438280:CDS |
| GCTGTGACATTGAAATAAGA+AGG | 0.503399 | tig0028533:-33744 | Msa1438280:CDS |
| CGAAGAGGATAGGATTATGC+AGG | 0.510366 | tig0028533:-36603 | Msa1438280:intron |
| ATTGCACATGCGATTGAAAG+TGG | 0.511159 | tig0028533:-32928 | Msa1438280:CDS |
| TACACGTGTGTCTTAGGCTA+AGG | 0.512094 | tig0028533:+32771 | None:intergenic |
| TAAACGCCACCGTGCATCAC+GGG | 0.517393 | tig0028533:-37432 | Msa1438280:CDS |
| ACCGCGACCACCCAAGGCTA+CGG | 0.522586 | tig0028533:-37349 | Msa1438280:CDS |
| GCCGTAGCCTTGGGTGGTCG+CGG | 0.528593 | tig0028533:+37348 | None:intergenic |
| ACAGCTCTTTGATTCCATCT+CGG | 0.529333 | tig0028533:+33762 | None:intergenic |
| TGCACGGTGGCGTTTACAGC+GGG | 0.531326 | tig0028533:+37439 | None:intergenic |
| GGAAGGGATGAAGAAGCAGT+TGG | 0.531481 | tig0028533:-33842 | Msa1438280:CDS |
| TGAGGATGTGAGTGTAAAGA+TGG | 0.535763 | tig0028533:+37237 | None:intergenic |
| TGTTCAGGAGGTGGATGCAC+AGG | 0.546856 | tig0028533:-36434 | Msa1438280:CDS |
| TCCTGATCTTCACGTTGGAT+CGG | 0.546920 | tig0028533:-37056 | Msa1438280:CDS |
| GATGATAACGTGCTCAACAT+TGG | 0.552257 | tig0028533:+32830 | None:intergenic |
| AATGTCGTTCTCTGTAACGG+TGG | 0.556631 | tig0028533:+37286 | None:intergenic |
| ACTTTCAATCGCATGTGCAA+TGG | 0.558375 | tig0028533:+32930 | None:intergenic |
| TCCTCAGTTGAGCTTATGGA+AGG | 0.559022 | tig0028533:-33859 | Msa1438280:intron |
| GAGCCAAGATCGAAGAGGAT+AGG | 0.559410 | tig0028533:-36613 | Msa1438280:CDS |
| GGTAAATAGTAGAATTACCT+TGG | 0.560260 | tig0028533:-33386 | Msa1438280:CDS |
| GGAAATGTCGTTCTCTGTAA+CGG | 0.561809 | tig0028533:+37283 | None:intergenic |
| TGAAGAATGCAAAGAAGCAA+GGG | 0.568057 | tig0028533:-36473 | Msa1438280:CDS |
| TGTTATGTTATAGTTGACGT+TGG | 0.570121 | tig0028533:-36500 | Msa1438280:intron |
| TGTCGAACCGCGACCACCCA+AGG | 0.574682 | tig0028533:-37355 | Msa1438280:CDS |
| GATGCCTTATGTTCAGGAGG+TGG | 0.577640 | tig0028533:-36443 | Msa1438280:CDS |
| ATTCGCACTACGATTTCTAC+CGG | 0.579364 | tig0028533:+32801 | None:intergenic |
| TGATGGCGATTGAAATGGTG+TGG | 0.584109 | tig0028533:+37405 | None:intergenic |
| TTGAAGAATGCAAAGAAGCA+AGG | 0.585930 | tig0028533:-36474 | Msa1438280:CDS |
| TTTGAAAGTAGAAAATATCC+CGG | 0.591716 | tig0028533:-37488 | Msa1438280:CDS |
| AAAGAAATTAGCTCAAGAGA+AGG | 0.593070 | tig0028533:-35195 | Msa1438280:CDS |
| ATAACGTGCTCAACATTGGA+TGG | 0.593412 | tig0028533:+32834 | None:intergenic |
| TCATATTTCATAGGGAAACA+AGG | 0.595680 | tig0028533:-32668 | Msa1438280:three_prime_UTR |
| TTACAATTGACAGGTGGATG+CGG | 0.596345 | tig0028533:-33407 | Msa1438280:intron |
| AGGATTCTCTAGATGCTCTA+GGG | 0.599505 | tig0028533:+37075 | None:intergenic |
| GTAAACGCCACCGTGCATCA+CGG | 0.602884 | tig0028533:-37433 | Msa1438280:CDS |
| GTAAAGATGGAAAACGACGC+CGG | 0.603830 | tig0028533:+37250 | None:intergenic |
| CCGGCCGCCGTAGCCTTGGG+TGG | 0.607394 | tig0028533:+37342 | None:intergenic |
| GAAAAGATAGTTACTCGGGG+AGG | 0.608338 | tig0028533:+37207 | None:intergenic |
| TGTTGAGGCTGAGTATTCAA+AGG | 0.614515 | tig0028533:-33716 | Msa1438280:intron |
| GAGAATCCTGATCTTCACGT+TGG | 0.618099 | tig0028533:-37061 | Msa1438280:CDS |
| TCAGTCGCCTGATAAAGTAC+AGG | 0.621157 | tig0028533:-35844 | Msa1438280:intron |
| TGTTGTAAAGCTTGATAACA+GGG | 0.622146 | tig0028533:+37032 | None:intergenic |
| GAAGTTGAAGGAGAAAACTG+TGG | 0.622296 | tig0028533:-36344 | Msa1438280:CDS |
| GCGACCACCCAAGGCTACGG+CGG | 0.623441 | tig0028533:-37346 | Msa1438280:CDS |
| AAATTGAATGAATATTTCTG+AGG | 0.626572 | tig0028533:+36977 | None:intergenic |
| ACAACAAACAGATGTCATTG+AGG | 0.632333 | tig0028533:-36378 | Msa1438280:CDS |
| TGTGGGTAACCCGTGATGCA+CGG | 0.633810 | tig0028533:+37423 | None:intergenic |
| CGAGAGAGCCAAGATCGAAG+AGG | 0.637014 | tig0028533:-36618 | Msa1438280:CDS |
| ATGTATCTGACTCTGTGTGA+TGG | 0.637674 | tig0028533:+37388 | None:intergenic |
| CCTCAGTTGAGCTTATGGAA+GGG | 0.637886 | tig0028533:-33858 | Msa1438280:intron |
| TTGCACATGCGATTGAAAGT+GGG | 0.640805 | tig0028533:-32927 | Msa1438280:CDS |
| AGAAGGCAAGAAACGCTGAA+AGG | 0.647873 | tig0028533:-35178 | Msa1438280:CDS |
| TGCACATCTAACAAACATGA+CGG | 0.649069 | tig0028533:+32736 | None:intergenic |
| GCACGTTATCATCCAAACTC+CGG | 0.660219 | tig0028533:-32820 | Msa1438280:three_prime_UTR |
| AGAGATGCCTTATGTTCAGG+AGG | 0.660324 | tig0028533:-36446 | Msa1438280:CDS |
| ACTCGGGGAGGAGATAGTTG+AGG | 0.661042 | tig0028533:+37219 | None:intergenic |
| TGTGCACTTAACATGTCAGT+CGG | 0.663538 | tig0028533:-32719 | Msa1438280:three_prime_UTR |
| AATAAGAAGGAGACATGTTG+AGG | 0.665309 | tig0028533:-33731 | Msa1438280:CDS |
| GATGGCGATTGAAATGGTGT+GGG | 0.667774 | tig0028533:+37406 | None:intergenic |
| ATGCACGGTGGCGTTTACAG+CGG | 0.684810 | tig0028533:+37438 | None:intergenic |
| GAAGAATGCAAAGAAGCAAG+GGG | 0.687158 | tig0028533:-36472 | Msa1438280:CDS |
| AGAAACTGAGAAGAGCGCCG+AGG | 0.742803 | tig0028533:+36912 | None:intergenic |
| GCACTTAACATGTCAGTCGG+TGG | 0.744445 | tig0028533:-32716 | Msa1438280:three_prime_UTR |
| GGGTAACCCGTGATGCACGG+TGG | 0.774303 | tig0028533:+37426 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATCTTATTTATTTATATAA+AGG | + | tig0028533:35132-35151 | None:intergenic | 10.0% |
| !!! | ATTTTCAACATTATTTATAT+TGG | - | tig0028533:35315-35334 | Msa1438280:intron | 10.0% |
| !!! | AAAAACTTTTTTTGTTTTTT+TGG | - | tig0028533:35645-35664 | Msa1438280:intron | 10.0% |
| !!! | AGTAATTGTAAATAATTTTT+AGG | - | tig0028533:37476-37495 | Msa1438280:CDS | 10.0% |
| !! | ATATTAAAAAACTGACAATT+AGG | + | tig0028533:33398-33417 | None:intergenic | 15.0% |
| !! | TAACATGGAAAAAAAAATAA+TGG | + | tig0028533:34320-34339 | None:intergenic | 15.0% |
| !! | ATGATATCATATATGAAAAA+TGG | - | tig0028533:34623-34642 | Msa1438280:intron | 15.0% |
| !! | TAAGGAAATCAAATTTAAAT+AGG | + | tig0028533:34855-34874 | None:intergenic | 15.0% |
| !!! | TTTTACTTTTTCTGTTTTTT+TGG | - | tig0028533:36961-36980 | Msa1438280:CDS | 15.0% |
| !!! | AAATTGAATGAATATTTCTG+AGG | + | tig0028533:33122-33141 | None:intergenic | 20.0% |
| !! | AGTTATTCAATGAATTGAAA+AGG | - | tig0028533:33292-33311 | Msa1438280:intron | 20.0% |
| !!! | TTTTTTTTTTTCCTCTCTTT+TGG | + | tig0028533:33362-33381 | None:intergenic | 20.0% |
| !!! | ATTGTCAGTTTTTTAATATC+AGG | - | tig0028533:33399-33418 | Msa1438280:intron | 20.0% |
| !! | AAATCTATTGCATATACTAT+TGG | + | tig0028533:33892-33911 | None:intergenic | 20.0% |
| !! | TCACTATTAATTTCTTTGTT+TGG | - | tig0028533:34058-34077 | Msa1438280:intron | 20.0% |
| !! | GAATATACAAAAAACTAACA+TGG | + | tig0028533:34335-34354 | None:intergenic | 20.0% |
| !!! | TTTGATTTTGTGAACAAAAT+AGG | + | tig0028533:34383-34402 | None:intergenic | 20.0% |
| !!! | ATATTGTATTTGCGTTTTAT+TGG | - | tig0028533:34462-34481 | Msa1438280:intron | 20.0% |
| !!! | ACATTGTTAGTTTGAAATAA+TGG | - | tig0028533:34529-34548 | Msa1438280:intron | 20.0% |
| !! | ATATCATATATGAAAAATGG+CGG | - | tig0028533:34626-34645 | Msa1438280:intron | 20.0% |
| !!! | TTCTAACAAACACAATATTT+TGG | + | tig0028533:35030-35049 | None:intergenic | 20.0% |
| !! | CAAAATTATCTATATCTCTT+CGG | - | tig0028533:35401-35420 | Msa1438280:intron | 20.0% |
| !! | AAAATTATCTATATCTCTTC+GGG | - | tig0028533:35402-35421 | Msa1438280:intron | 20.0% |
| !!! | TTTGTTTTTTTGGATTTGAA+TGG | - | tig0028533:35655-35674 | Msa1438280:intron | 20.0% |
| !!! | AAAGAATCATAAAGCATTAA+AGG | - | tig0028533:35824-35843 | Msa1438280:intron | 20.0% |
| !! | GAAATCATAACAAAATAACA+TGG | + | tig0028533:36147-36166 | None:intergenic | 20.0% |
| !! | TTTAGTTATGGATGTATTTA+GGG | + | tig0028533:36451-36470 | None:intergenic | 20.0% |
| !!! | ATTTTTTGTTTACAATTGAC+AGG | - | tig0028533:36680-36699 | Msa1438280:intron | 20.0% |
| !! | AAAAATTCTAATACCCTATT+TGG | - | tig0028533:36839-36858 | Msa1438280:intron | 20.0% |
| !!! | AATAATTGACTTATTATGCT+TGG | - | tig0028533:37114-37133 | Msa1438280:intron | 20.0% |
| ! | TTTGAAAGTAGAAAATATCC+CGG | - | tig0028533:32608-32627 | Msa1438280:three_prime_UTR | 25.0% |
| ! | TTTAGGAATTGAACTATTTC+CGG | + | tig0028533:32776-32795 | None:intergenic | 25.0% |
| ! | AAGAGAAAAACAAAGTGAAA+AGG | + | tig0028533:32957-32976 | None:intergenic | 25.0% |
| ! | GAAATATTCATTCAATTTCG+CGG | - | tig0028533:33124-33143 | Msa1438280:intron | 25.0% |
| !! | AAATTTTTGCTTATAAGTGC+CGG | - | tig0028533:33316-33335 | Msa1438280:intron | 25.0% |
| !! | TTCTTCAATAATTGGTGATA+TGG | + | tig0028533:33441-33460 | None:intergenic | 25.0% |
| !!! | GTGTTGATTTCTTCAATAAT+TGG | + | tig0028533:33449-33468 | None:intergenic | 25.0% |
| ! | TATTGAAGAAATCAACACTT+TGG | - | tig0028533:33451-33470 | Msa1438280:intron | 25.0% |
| !! | TATAATTTGTATGTGTGTGT+TGG | - | tig0028533:33548-33567 | Msa1438280:intron | 25.0% |
| ! | TCATGCTAAGTTTCTATTAT+TGG | + | tig0028533:33835-33854 | None:intergenic | 25.0% |
| ! | CATAATCTTACTTGATATTG+AGG | - | tig0028533:33862-33881 | Msa1438280:intron | 25.0% |
| ! | TATGCAATAGATTTCATTAG+AGG | - | tig0028533:33898-33917 | Msa1438280:intron | 25.0% |
| ! | TAGTATATTAATTCTTGTGC+TGG | - | tig0028533:34121-34140 | Msa1438280:intron | 25.0% |
| ! | AAAAATACCTGTACTTTATC+AGG | + | tig0028533:34262-34281 | None:intergenic | 25.0% |
| ! | ACACAAAATGTATTATGTCA+GGG | + | tig0028533:34492-34511 | None:intergenic | 25.0% |
| ! | AACACAAAATGTATTATGTC+AGG | + | tig0028533:34493-34512 | None:intergenic | 25.0% |
| !!! | ATTTTGTGTTTTTACCACAA+TGG | - | tig0028533:34503-34522 | Msa1438280:intron | 25.0% |
| ! | AACTAAATATTGAAAGCAAG+TGG | - | tig0028533:34708-34727 | Msa1438280:intron | 25.0% |
| !!! | ACAAACACAATATTTTGGAA+TGG | + | tig0028533:35025-35044 | None:intergenic | 25.0% |
| ! | TTGTTTCAATTTCAAAACAC+TGG | - | tig0028533:35056-35075 | Msa1438280:intron | 25.0% |
| ! | TGTTTCAATTTCAAAACACT+GGG | - | tig0028533:35057-35076 | Msa1438280:intron | 25.0% |
| !!! | AGATGATTTGTTTTTACGAT+TGG | - | tig0028533:35147-35166 | Msa1438280:intron | 25.0% |
| !! | AATTGAATTTTCCCTTGTAA+TGG | - | tig0028533:35205-35224 | Msa1438280:CDS | 25.0% |
| !! | ATTGAATTTTCCCTTGTAAT+GGG | - | tig0028533:35206-35225 | Msa1438280:CDS | 25.0% |
| ! | GAACAAACATGAACATAAAA+TGG | - | tig0028533:35236-35255 | Msa1438280:intron | 25.0% |
| ! | ATTGAATGACAACATCTATA+AGG | + | tig0028533:35297-35316 | None:intergenic | 25.0% |
| ! | TACATTATGGAATGAGTAAA+TGG | + | tig0028533:35372-35391 | None:intergenic | 25.0% |
| ! | TTTGTTTGCAGTTTACATTA+TGG | + | tig0028533:35385-35404 | None:intergenic | 25.0% |
| ! | AAATTATCTATATCTCTTCG+GGG | - | tig0028533:35403-35422 | Msa1438280:intron | 25.0% |
| !! | ATTTTCTTGTATACCTGAAA+AGG | + | tig0028533:35489-35508 | None:intergenic | 25.0% |
| !!! | TTTTCCTTGTTTGATATACA+GGG | + | tig0028533:35629-35648 | None:intergenic | 25.0% |
| !!! | TTTTTCCTTGTTTGATATAC+AGG | + | tig0028533:35630-35649 | None:intergenic | 25.0% |
| ! | TTCAATAGATTTAGCTGAAT+AGG | + | tig0028533:35805-35824 | None:intergenic | 25.0% |
| !!! | CAAAGGTATCTTTTATTAAG+CGG | - | tig0028533:36397-36416 | Msa1438280:CDS | 25.0% |
| ! | CTTTAGTTATGGATGTATTT+AGG | + | tig0028533:36452-36471 | None:intergenic | 25.0% |
| !! | AGTAACGTTTTCTTTAGTTA+TGG | + | tig0028533:36463-36482 | None:intergenic | 25.0% |
| !!! | TGAAATTTTGAAGCCAAATA+GGG | + | tig0028533:36855-36874 | None:intergenic | 25.0% |
| !!! | TTGAAATTTTGAAGCCAAAT+AGG | + | tig0028533:36856-36875 | None:intergenic | 25.0% |
| !! | ATTTCCATTTTCCTATTATG+AGG | + | tig0028533:36891-36910 | None:intergenic | 25.0% |
| ! | ATATGGATTCCATTTAACTA+TGG | - | tig0028533:37229-37248 | Msa1438280:CDS | 25.0% |
| ! | TTCTCAACTTCATATTTCAT+AGG | - | tig0028533:37419-37438 | Msa1438280:CDS | 25.0% |
| ! | TCTCAACTTCATATTTCATA+GGG | - | tig0028533:37420-37439 | Msa1438280:CDS | 25.0% |
| AAGAGAAAAGATAGTTACTC+GGG | + | tig0028533:32896-32915 | None:intergenic | 30.0% | |
| GAAGAGAAAAGATAGTTACT+CGG | + | tig0028533:32897-32916 | None:intergenic | 30.0% | |
| !! | TTCTCTTTTTCATTTCTCAC+AGG | - | tig0028533:32970-32989 | Msa1438280:intron | 30.0% |
| !! | TCTCTTTTTCATTTCTCACA+GGG | - | tig0028533:32971-32990 | Msa1438280:intron | 30.0% |
| ! | TGTTGTAAAGCTTGATAACA+GGG | + | tig0028533:33067-33086 | None:intergenic | 30.0% |
| ! | TTGTTGTAAAGCTTGATAAC+AGG | + | tig0028533:33068-33087 | None:intergenic | 30.0% |
| TGTTATGTTATAGTTGACGT+TGG | - | tig0028533:33596-33615 | Msa1438280:intron | 30.0% | |
| CTTGTGTGAATAGTTTATGT+TGG | - | tig0028533:33989-34008 | Msa1438280:intron | 30.0% | |
| !!! | ATTAATTCTTGTGCTGGTTT+TGG | - | tig0028533:34127-34146 | Msa1438280:intron | 30.0% |
| TATATTCAGCATCAGAAATC+TGG | + | tig0028533:34183-34202 | None:intergenic | 30.0% | |
| ! | ACTAACAATGTTTTCCATTG+TGG | + | tig0028533:34520-34539 | None:intergenic | 30.0% |
| !! | ATGAGCATGCATTGATTAAA+AGG | + | tig0028533:34562-34581 | None:intergenic | 30.0% |
| CACAGGACATTTAGTAAAAA+AGG | + | tig0028533:34591-34610 | None:intergenic | 30.0% | |
| ! | TTTTTACTAAATGTCCTGTG+AGG | - | tig0028533:34591-34610 | Msa1438280:intron | 30.0% |
| ! | TTTTACTAAATGTCCTGTGA+GGG | - | tig0028533:34592-34611 | Msa1438280:intron | 30.0% |
| ! | TTTAGATTTTCTTCCTGTGT+AGG | - | tig0028533:34804-34823 | Msa1438280:intron | 30.0% |
| ATAAAATCCTATACCTACAC+AGG | + | tig0028533:34820-34839 | None:intergenic | 30.0% | |
| TTTCCTTATCTTGCATAAAG+AGG | - | tig0028533:34867-34886 | Msa1438280:intron | 30.0% | |
| TTCCTTATCTTGCATAAAGA+GGG | - | tig0028533:34868-34887 | Msa1438280:intron | 30.0% | |
| AAAGAAATTAGCTCAAGAGA+AGG | - | tig0028533:34901-34920 | Msa1438280:intron | 30.0% | |
| !!! | ACACAATATTTTGGAATGGA+GGG | + | tig0028533:35021-35040 | None:intergenic | 30.0% |
| !!! | AACACAATATTTTGGAATGG+AGG | + | tig0028533:35022-35041 | None:intergenic | 30.0% |
| !!! | TGATTTGTTTTTACGATTGG+TGG | - | tig0028533:35150-35169 | Msa1438280:intron | 30.0% |
| !!! | GATTTGTTTTTACGATTGGT+GGG | - | tig0028533:35151-35170 | Msa1438280:intron | 30.0% |
| !!! | ATTTGTTTTTACGATTGGTG+GGG | - | tig0028533:35152-35171 | Msa1438280:intron | 30.0% |
| ! | TTGAATTTTCCCTTGTAATG+GGG | - | tig0028533:35207-35226 | Msa1438280:CDS | 30.0% |
| TTCTTTAATCCCCATTACAA+GGG | + | tig0028533:35219-35238 | None:intergenic | 30.0% | |
| ! | CACTTTATCAATTCCTTTTC+AGG | - | tig0028533:35473-35492 | Msa1438280:intron | 30.0% |
| AGTCAAATAACAAGACGATA+GGG | + | tig0028533:35557-35576 | None:intergenic | 30.0% | |
| TAAATCATCATGCTAAACGA+AGG | + | tig0028533:35586-35605 | None:intergenic | 30.0% | |
| ! | TTTCCTTGTTTGATATACAG+GGG | + | tig0028533:35628-35647 | None:intergenic | 30.0% |
| ATTTGAATGGAACACATGAT+GGG | - | tig0028533:35668-35687 | Msa1438280:intron | 30.0% | |
| AGATATTCTACTATGATCTG+TGG | - | tig0028533:35711-35730 | Msa1438280:intron | 30.0% | |
| GATATTCTACTATGATCTGT+GGG | - | tig0028533:35712-35731 | Msa1438280:intron | 30.0% | |
| TTTAAACACGTATATGTGTG+TGG | - | tig0028533:36201-36220 | Msa1438280:intron | 30.0% | |
| TTAAACACGTATATGTGTGT+GGG | - | tig0028533:36202-36221 | Msa1438280:intron | 30.0% | |
| !!! | TTTTTTACTGTCTAGGTAGT+TGG | + | tig0028533:36313-36332 | None:intergenic | 30.0% |
| AGCGGAATATAAATCTCTAA+TGG | - | tig0028533:36415-36434 | Msa1438280:CDS | 30.0% | |
| AATCGTGATTAGTATTCGTT+AGG | - | tig0028533:36598-36617 | Msa1438280:intron | 30.0% | |
| !! | TTTTGTTTACAATTGACAGG+TGG | - | tig0028533:36683-36702 | Msa1438280:intron | 30.0% |
| GGTAAATAGTAGAATTACCT+TGG | - | tig0028533:36710-36729 | Msa1438280:intron | 30.0% | |
| TGCTTCCAAAATAGGATAAA+CGG | + | tig0028533:36809-36828 | None:intergenic | 30.0% | |
| ! | CATTTTCCTATTATGAGGTA+TGG | + | tig0028533:36886-36905 | None:intergenic | 30.0% |
| CATACCTCATAATAGGAAAA+TGG | - | tig0028533:36884-36903 | Msa1438280:intron | 30.0% | |
| AAGCTTAGTCCATAGTTAAA+TGG | + | tig0028533:37241-37260 | None:intergenic | 30.0% | |
| TCATATTTCATAGGGAAACA+AGG | - | tig0028533:37428-37447 | Msa1438280:CDS | 30.0% | |
| CACAAATGTTCGATTATTCC+GGG | + | tig0028533:32629-32648 | None:intergenic | 35.0% | |
| CCACAAATGTTCGATTATTC+CGG | + | tig0028533:32630-32649 | None:intergenic | 35.0% | |
| TGGCAATTTGAAAGTCGTTT+AGG | + | tig0028533:32793-32812 | None:intergenic | 35.0% | |
| AGAGAAAAGATAGTTACTCG+GGG | + | tig0028533:32895-32914 | None:intergenic | 35.0% | |
| AATAGAAACGAAACGTGTGA+AGG | + | tig0028533:32932-32951 | None:intergenic | 35.0% | |
| CAAGCTTTACAACAAGATCA+AGG | - | tig0028533:33073-33092 | Msa1438280:intron | 35.0% | |
| GAAGAAGTGAAAGTAACCAA+TGG | + | tig0028533:33214-33233 | None:intergenic | 35.0% | |
| ATGTGATGATTATGCAGAAG+TGG | + | tig0028533:33239-33258 | None:intergenic | 35.0% | |
| TTGAAGAATGCAAAGAAGCA+AGG | - | tig0028533:33622-33641 | Msa1438280:intron | 35.0% | |
| TGAAGAATGCAAAGAAGCAA+GGG | - | tig0028533:33623-33642 | Msa1438280:intron | 35.0% | |
| !! | ATGACATCTGTTTGTTGTTC+AGG | + | tig0028533:33716-33735 | None:intergenic | 35.0% |
| ACAACAAACAGATGTCATTG+AGG | - | tig0028533:33718-33737 | Msa1438280:CDS | 35.0% | |
| !! | GACTGATTTGAAGAAGTTGA+AGG | - | tig0028533:33740-33759 | Msa1438280:CDS | 35.0% |
| AACTGTGGAAATGGATGATA+AGG | - | tig0028533:33767-33786 | Msa1438280:CDS | 35.0% | |
| CTTCTCATCTACTAATCCAA+AGG | + | tig0028533:33969-33988 | None:intergenic | 35.0% | |
| ! | TATATTGCAAGCTGCAGTTT+TGG | - | tig0028533:34028-34047 | Msa1438280:intron | 35.0% |
| ! | TGGCAACTGATTCTAATGAT+TGG | + | tig0028533:34300-34319 | None:intergenic | 35.0% |
| AATATTTGCACAGGCAGATA+GGG | + | tig0028533:34447-34466 | None:intergenic | 35.0% | |
| CGCAAATACAATATTTGCAC+AGG | + | tig0028533:34456-34475 | None:intergenic | 35.0% | |
| TCATATATGAAAAATGGCGG+TGG | - | tig0028533:34629-34648 | Msa1438280:intron | 35.0% | |
| ! | TTTTCTTCCTGTGTAGGTAT+AGG | - | tig0028533:34810-34829 | Msa1438280:intron | 35.0% |
| !! | GGGTATTTTAAATATCCACG+AGG | - | tig0028533:35077-35096 | Msa1438280:intron | 35.0% |
| CAAAGATAAATCATACCTCG+TGG | + | tig0028533:35095-35114 | None:intergenic | 35.0% | |
| TGCATAAATCCAACACAGTT+TGG | + | tig0028533:35185-35204 | None:intergenic | 35.0% | |
| GTTCTTTAATCCCCATTACA+AGG | + | tig0028533:35220-35239 | None:intergenic | 35.0% | |
| GAGTCAAATAACAAGACGAT+AGG | + | tig0028533:35558-35577 | None:intergenic | 35.0% | |
| TTTCCCCTGTATATCAAACA+AGG | - | tig0028533:35622-35641 | Msa1438280:intron | 35.0% | |
| GATTTGAATGGAACACATGA+TGG | - | tig0028533:35667-35686 | Msa1438280:intron | 35.0% | |
| GATTCTTTAGACCTTCCTAT+AGG | - | tig0028533:35779-35798 | Msa1438280:intron | 35.0% | |
| ATTTAGCTGAATAGGCCTAT+AGG | + | tig0028533:35797-35816 | None:intergenic | 35.0% | |
| !! | ACTTGATGACGAAGAAGTTA+TGG | - | tig0028533:35851-35870 | Msa1438280:CDS | 35.0% |
| TTCAACCAAATTGACCTGAA+GGG | + | tig0028533:35883-35902 | None:intergenic | 35.0% | |
| TTTCAACCAAATTGACCTGA+AGG | + | tig0028533:35884-35903 | None:intergenic | 35.0% | |
| TTCAGGTCAATTTGGTTGAA+AGG | - | tig0028533:35883-35902 | Msa1438280:CDS | 35.0% | |
| TTGGTTGAAAGGCAAACTAA+AGG | - | tig0028533:35894-35913 | Msa1438280:CDS | 35.0% | |
| AGTGAAAGGTAATTAGCCAA+CGG | + | tig0028533:35966-35985 | None:intergenic | 35.0% | |
| AAAAATCATGCCTCAGTGAA+AGG | + | tig0028533:35980-35999 | None:intergenic | 35.0% | |
| !!! | TCTCGGATTTTTTACTGTCT+AGG | + | tig0028533:36320-36339 | None:intergenic | 35.0% |
| AGACAGTAAAAAATCCGAGA+TGG | - | tig0028533:36320-36339 | Msa1438280:intron | 35.0% | |
| GCTGTGACATTGAAATAAGA+AGG | - | tig0028533:36352-36371 | Msa1438280:CDS | 35.0% | |
| AATAAGAAGGAGACATGTTG+AGG | - | tig0028533:36365-36384 | Msa1438280:CDS | 35.0% | |
| GTTTCAATCTGTGTATGAGA+GGG | - | tig0028533:36503-36522 | Msa1438280:intron | 35.0% | |
| GAGATAAGAAGTAATGTTGC+TGG | + | tig0028533:36571-36590 | None:intergenic | 35.0% | |
| AGAATCTGCAACAGAAAAAG+TGG | - | tig0028533:36737-36756 | Msa1438280:intron | 35.0% | |
| ATGCGAAGAGATAGAAAAAG+AGG | - | tig0028533:36776-36795 | Msa1438280:intron | 35.0% | |
| ! | GAGATAGAAAAAGAGGTATG+TGG | - | tig0028533:36783-36802 | Msa1438280:intron | 35.0% |
| ! | GTCAAATCCAGCTACTTTAA+TGG | + | tig0028533:37208-37227 | None:intergenic | 35.0% |
| AGTAGCTGGATTTGACAATA+TGG | - | tig0028533:37212-37231 | Msa1438280:intron | 35.0% | |
| AAACTTTACACGTGTGTCTT+AGG | + | tig0028533:37334-37353 | None:intergenic | 35.0% | |
| TGCACATCTAACAAACATGA+CGG | + | tig0028533:37363-37382 | None:intergenic | 35.0% | |
| CCGGAATAATCGAACATTTG+TGG | - | tig0028533:32627-32646 | Msa1438280:three_prime_UTR | 40.0% | |
| ATGTATCTGACTCTGTGTGA+TGG | + | tig0028533:32711-32730 | None:intergenic | 40.0% | |
| GGAAATGTCGTTCTCTGTAA+CGG | + | tig0028533:32816-32835 | None:intergenic | 40.0% | |
| GACATTTCCAACCCTAAAAC+CGG | - | tig0028533:32827-32846 | Msa1438280:three_prime_UTR | 40.0% | |
| TGAGGATGTGAGTGTAAAGA+TGG | + | tig0028533:32862-32881 | None:intergenic | 40.0% | |
| AGGATTCTCTAGATGCTCTA+GGG | + | tig0028533:33024-33043 | None:intergenic | 40.0% | |
| TTCTCAGTTTCTGCATCCAT+TGG | - | tig0028533:33195-33214 | Msa1438280:intron | 40.0% | |
| AATCCTATCCTCTTCGATCT+TGG | + | tig0028533:33489-33508 | None:intergenic | 40.0% | |
| ! | TTGTATGTGTGTGTTGGTAC+TGG | - | tig0028533:33554-33573 | Msa1438280:intron | 40.0% |
| GAAGAATGCAAAGAAGCAAG+GGG | - | tig0028533:33624-33643 | Msa1438280:intron | 40.0% | |
| AAGAGAGATGCCTTATGTTC+AGG | - | tig0028533:33647-33666 | Msa1438280:intron | 40.0% | |
| GAAGTTGAAGGAGAAAACTG+TGG | - | tig0028533:33752-33771 | Msa1438280:CDS | 40.0% | |
| GAAGGAGAAAACTGTGGAAA+TGG | - | tig0028533:33758-33777 | Msa1438280:CDS | 40.0% | |
| !! | AAGGTGAGTTTGTTGTCTGA+TGG | - | tig0028533:33786-33805 | Msa1438280:CDS | 40.0% |
| ATCTACGTGAGCAATTCATG+TGG | - | tig0028533:33928-33947 | Msa1438280:intron | 40.0% | |
| TCTACGTGAGCAATTCATGT+GGG | - | tig0028533:33929-33948 | Msa1438280:intron | 40.0% | |
| TGAGCAATTCATGTGGGATT+AGG | - | tig0028533:33935-33954 | Msa1438280:intron | 40.0% | |
| GGATTAGGACATTGAACCTT+TGG | - | tig0028533:33950-33969 | Msa1438280:intron | 40.0% | |
| CAATATTTGCACAGGCAGAT+AGG | + | tig0028533:34448-34467 | None:intergenic | 40.0% | |
| AGCCCTCTTTATGCAAGATA+AGG | + | tig0028533:34873-34892 | None:intergenic | 40.0% | |
| CTTGGCATAAACTTCAACGA+GGG | + | tig0028533:34975-34994 | None:intergenic | 40.0% | |
| TATCTGGTGACAACATACCT+TGG | + | tig0028533:34993-35012 | None:intergenic | 40.0% | |
| AATGTCGAATCACTGCAAGA+AGG | - | tig0028533:35506-35525 | Msa1438280:intron | 40.0% | |
| AGTTATGGATAAGTCCCTTC+AGG | - | tig0028533:35866-35885 | Msa1438280:CDS | 40.0% | |
| TAAGTCCCTTCAGGTCAATT+TGG | - | tig0028533:35875-35894 | Msa1438280:CDS | 40.0% | |
| ATTCCATTTCCAAATGCCGT+TGG | - | tig0028533:35947-35966 | Msa1438280:intron | 40.0% | |
| TGGCTAATTACCTTTCACTG+AGG | - | tig0028533:35967-35986 | Msa1438280:intron | 40.0% | |
| ACAGCTCTTTGATTCCATCT+CGG | + | tig0028533:36337-36356 | None:intergenic | 40.0% | |
| TGTTGAGGCTGAGTATTCAA+AGG | - | tig0028533:36380-36399 | Msa1438280:CDS | 40.0% | |
| ! | CAGATTGAAACCAGTGTTGA+CGG | + | tig0028533:36494-36513 | None:intergenic | 40.0% |
| GGTTTCAATCTGTGTATGAG+AGG | - | tig0028533:36502-36521 | Msa1438280:intron | 40.0% | |
| TGTGTATGAGAGGGTTTGAA+GGG | - | tig0028533:36512-36531 | Msa1438280:intron | 40.0% | |
| GTTCAAACCATTCATCCACT+AGG | - | tig0028533:36540-36559 | Msa1438280:intron | 40.0% | |
| TTACAATTGACAGGTGGATG+CGG | - | tig0028533:36689-36708 | Msa1438280:intron | 40.0% | |
| ! | TGTTGCAGATTCTTTTGCCA+AGG | + | tig0028533:36730-36749 | None:intergenic | 40.0% |
| ! | TGTGGCCGTTTATCCTATTT+TGG | - | tig0028533:36801-36820 | Msa1438280:intron | 40.0% |
| !! | TCCTATTTTGGAAGCATGTG+TGG | - | tig0028533:36813-36832 | Msa1438280:intron | 40.0% |
| ACCACACATGCTTCCAAAAT+AGG | + | tig0028533:36817-36836 | None:intergenic | 40.0% | |
| TTGCAGCCATACCTCATAAT+AGG | - | tig0028533:36877-36896 | Msa1438280:intron | 40.0% | |
| ACATTGCAGTGTGCTTAACA+AGG | + | tig0028533:37038-37057 | None:intergenic | 40.0% | |
| ACTTTCAATCGCATGTGCAA+TGG | + | tig0028533:37169-37188 | None:intergenic | 40.0% | |
| ATTGCACATGCGATTGAAAG+TGG | - | tig0028533:37168-37187 | Msa1438280:intron | 40.0% | |
| TTGCACATGCGATTGAAAGT+GGG | - | tig0028533:37169-37188 | Msa1438280:intron | 40.0% | |
| ATAACGTGCTCAACATTGGA+TGG | + | tig0028533:37265-37284 | None:intergenic | 40.0% | |
| ! | GATGATAACGTGCTCAACAT+TGG | + | tig0028533:37269-37288 | None:intergenic | 40.0% |
| ATTCGCACTACGATTTCTAC+CGG | + | tig0028533:37298-37317 | None:intergenic | 40.0% | |
| TGTGCACTTAACATGTCAGT+CGG | - | tig0028533:37377-37396 | Msa1438280:CDS | 40.0% | |
| GATGGCGATTGAAATGGTGT+GGG | + | tig0028533:32693-32712 | None:intergenic | 45.0% | |
| ! | TGATGGCGATTGAAATGGTG+TGG | + | tig0028533:32694-32713 | None:intergenic | 45.0% |
| ! | CTGTGTGATGGCGATTGAAA+TGG | + | tig0028533:32699-32718 | None:intergenic | 45.0% |
| AATGTCGTTCTCTGTAACGG+TGG | + | tig0028533:32813-32832 | None:intergenic | 45.0% | |
| GTAAAGATGGAAAACGACGC+CGG | + | tig0028533:32849-32868 | None:intergenic | 45.0% | |
| GAAAAGATAGTTACTCGGGG+AGG | + | tig0028533:32892-32911 | None:intergenic | 45.0% | |
| GAAACGTGTGAAGGAAGGAT+TGG | + | tig0028533:32923-32942 | None:intergenic | 45.0% | |
| GAAACGAAACGTGTGAAGGA+AGG | + | tig0028533:32928-32947 | None:intergenic | 45.0% | |
| CAGGATTCTCTAGATGCTCT+AGG | + | tig0028533:33025-33044 | None:intergenic | 45.0% | |
| GAGAATCCTGATCTTCACGT+TGG | - | tig0028533:33035-33054 | Msa1438280:intron | 45.0% | |
| TCCTGATCTTCACGTTGGAT+CGG | - | tig0028533:33040-33059 | Msa1438280:intron | 45.0% | |
| !! | TTATAAGTGCCGGAGCTAAC+CGG | - | tig0028533:33326-33345 | Msa1438280:CDS | 45.0% |
| !!! | CTCTTTTGGCTTACTCGTTC+CGG | + | tig0028533:33348-33367 | None:intergenic | 45.0% |
| GAACGAGTAAGCCAAAAGAG+AGG | - | tig0028533:33348-33367 | Msa1438280:CDS | 45.0% | |
| CGAAGAGGATAGGATTATGC+AGG | - | tig0028533:33493-33512 | Msa1438280:intron | 45.0% | |
| AGAGATGCCTTATGTTCAGG+AGG | - | tig0028533:33650-33669 | Msa1438280:intron | 45.0% | |
| !!! | TTGCAAGCTGCAGTTTTGGA+AGG | - | tig0028533:34032-34051 | Msa1438280:intron | 45.0% |
| TCAGTCGCCTGATAAAGTAC+AGG | - | tig0028533:34252-34271 | Msa1438280:intron | 45.0% | |
| ATCATCAATTCAGCCCTCAC+AGG | + | tig0028533:34608-34627 | None:intergenic | 45.0% | |
| AGAAGGCAAGAAACGCTGAA+AGG | - | tig0028533:34918-34937 | Msa1438280:intron | 45.0% | |
| CCTTGGCATAAACTTCAACG+AGG | + | tig0028533:34976-34995 | None:intergenic | 45.0% | |
| CCTCGTTGAAGTTTATGCCA+AGG | - | tig0028533:34973-34992 | Msa1438280:intron | 45.0% | |
| ATCCAACACAGTTTGGCCAA+AGG | + | tig0028533:35178-35197 | None:intergenic | 45.0% | |
| GGTGCAGGTTATACAAGAAC+AGG | - | tig0028533:35527-35546 | Msa1438280:intron | 45.0% | |
| AGCTGAATAGGCCTATAGGA+AGG | + | tig0028533:35793-35812 | None:intergenic | 45.0% | |
| TAGCCAACGGCATTTGGAAA+TGG | + | tig0028533:35953-35972 | None:intergenic | 45.0% | |
| GGTAATTAGCCAACGGCATT+TGG | + | tig0028533:35959-35978 | None:intergenic | 45.0% | |
| TCCATAAGCTCAACTGAGGA+GGG | + | tig0028533:36237-36256 | None:intergenic | 45.0% | |
| TTCCATAAGCTCAACTGAGG+AGG | + | tig0028533:36238-36257 | None:intergenic | 45.0% | |
| TCCTCAGTTGAGCTTATGGA+AGG | - | tig0028533:36237-36256 | Msa1438280:intron | 45.0% | |
| CCTCAGTTGAGCTTATGGAA+GGG | - | tig0028533:36238-36257 | Msa1438280:intron | 45.0% | |
| CTTCTTATCTCCGTCAACAC+TGG | - | tig0028533:36481-36500 | Msa1438280:CDS | 45.0% | |
| CTGTGTATGAGAGGGTTTGA+AGG | - | tig0028533:36511-36530 | Msa1438280:intron | 45.0% | |
| ! | GGTTTCACCTAGTGGATGAA+TGG | + | tig0028533:36550-36569 | None:intergenic | 45.0% |
| !! | ATGTTGCTGGTTTCACCTAG+TGG | + | tig0028533:36558-36577 | None:intergenic | 45.0% |
| AGTGCGACCATTAAAGTAGC+TGG | - | tig0028533:37198-37217 | Msa1438280:intron | 45.0% | |
| GCACGTTATCATCCAAACTC+CGG | - | tig0028533:37276-37295 | Msa1438280:CDS | 45.0% | |
| CTACGATTTCTACCGGAGTT+TGG | + | tig0028533:37291-37310 | None:intergenic | 45.0% | |
| TACACGTGTGTCTTAGGCTA+AGG | + | tig0028533:37328-37347 | None:intergenic | 45.0% | |
| !!! | ATCTTATTTATTTATATAAA+GGG | + | tig0028533:35131-35150 | None:intergenic | 5.0% |
| GTCGCGGTTCGACATTTCTT+CGG | + | tig0028533:32735-32754 | None:intergenic | 50.0% | |
| !!! | GGAAAACGACGCCGGTTTTA+GGG | + | tig0028533:32841-32860 | None:intergenic | 50.0% |
| !!! | TGGAAAACGACGCCGGTTTT+AGG | + | tig0028533:32842-32861 | None:intergenic | 50.0% |
| ACCGATCCAACGTGAAGATC+AGG | + | tig0028533:33044-33063 | None:intergenic | 50.0% | |
| ! | AGGAAAAACTCGGTTCGACG+AGG | + | tig0028533:33167-33186 | None:intergenic | 50.0% |
| ! | CGTCGAACCGAGTTTTTCCT+CGG | - | tig0028533:33167-33186 | Msa1438280:intron | 50.0% |
| !! | AAGAGCGCCGAGGAAAAACT+CGG | + | tig0028533:33177-33196 | None:intergenic | 50.0% |
| ! | TTACTCGTTCCGGTTAGCTC+CGG | + | tig0028533:33338-33357 | None:intergenic | 50.0% |
| GAGCCAAGATCGAAGAGGAT+AGG | - | tig0028533:33483-33502 | Msa1438280:intron | 50.0% | |
| GATGCCTTATGTTCAGGAGG+TGG | - | tig0028533:33653-33672 | Msa1438280:intron | 50.0% | |
| GCATCCACCTCCTGAACATA+AGG | + | tig0028533:33660-33679 | None:intergenic | 50.0% | |
| ATTTGCACAGGCAGATAGGG+TGG | + | tig0028533:34444-34463 | None:intergenic | 50.0% | |
| !! | GGAATGGAGGGAGTACTATC+TGG | + | tig0028533:35009-35028 | None:intergenic | 50.0% |
| TTTACGATTGGTGGGGCCTT+TGG | - | tig0028533:35159-35178 | Msa1438280:intron | 50.0% | |
| ! | GAATCACTGCAAGAAGGTGC+AGG | - | tig0028533:35512-35531 | Msa1438280:intron | 50.0% |
| CTTGTGCAAACACGCAATGC+TGG | - | tig0028533:35923-35942 | Msa1438280:intron | 50.0% | |
| TCCCTCCTCAGTTGAGCTTA+TGG | - | tig0028533:36233-36252 | Msa1438280:intron | 50.0% | |
| CCCTTCCATAAGCTCAACTG+AGG | + | tig0028533:36241-36260 | None:intergenic | 50.0% | |
| GGAAGGGATGAAGAAGCAGT+TGG | - | tig0028533:36254-36273 | Msa1438280:intron | 50.0% | |
| ATGAGAGGGTTTGAAGGGCA+TGG | - | tig0028533:36517-36536 | Msa1438280:intron | 50.0% | |
| ! | TGAGAGGGTTTGAAGGGCAT+GGG | - | tig0028533:36518-36537 | Msa1438280:intron | 50.0% |
| GCACTTAACATGTCAGTCGG+TGG | - | tig0028533:37380-37399 | Msa1438280:CDS | 50.0% | |
| AACATGTCAGTCGGTGGTTG+TGG | - | tig0028533:37386-37405 | Msa1438280:CDS | 50.0% | |
| ATGCACGGTGGCGTTTACAG+CGG | + | tig0028533:32661-32680 | None:intergenic | 55.0% | |
| GTAAACGCCACCGTGCATCA+CGG | - | tig0028533:32663-32682 | Msa1438280:three_prime_UTR | 55.0% | |
| TAAACGCCACCGTGCATCAC+GGG | - | tig0028533:32664-32683 | Msa1438280:three_prime_UTR | 55.0% | |
| TGTGGGTAACCCGTGATGCA+CGG | + | tig0028533:32676-32695 | None:intergenic | 55.0% | |
| !!! | AACGACGCCGGTTTTAGGGT+TGG | + | tig0028533:32837-32856 | None:intergenic | 55.0% |
| ACTCGGGGAGGAGATAGTTG+AGG | + | tig0028533:32880-32899 | None:intergenic | 55.0% | |
| ! | AACTCGGTTCGACGAGGATC+AGG | + | tig0028533:33161-33180 | None:intergenic | 55.0% |
| !! | AGAAACTGAGAAGAGCGCCG+AGG | + | tig0028533:33187-33206 | None:intergenic | 55.0% |
| CGAGAGAGCCAAGATCGAAG+AGG | - | tig0028533:33478-33497 | Msa1438280:intron | 55.0% | |
| TGTTCAGGAGGTGGATGCAC+AGG | - | tig0028533:33662-33681 | Msa1438280:intron | 55.0% | |
| CAACGAGGGCAGTCTTCTTG+TGG | + | tig0028533:34961-34980 | None:intergenic | 55.0% | |
| GGCCTTTGGCCAAACTGTGT+TGG | - | tig0028533:35173-35192 | Msa1438280:intron | 55.0% | |
| TGCACGGTGGCGTTTACAGC+GGG | + | tig0028533:32660-32679 | None:intergenic | 60.0% | |
| GGGTAACCCGTGATGCACGG+TGG | + | tig0028533:32673-32692 | None:intergenic | 65.0% | |
| TGTCGAACCGCGACCACCCA+AGG | - | tig0028533:32741-32760 | Msa1438280:three_prime_UTR | 65.0% | |
| ACCGCGACCACCCAAGGCTA+CGG | - | tig0028533:32747-32766 | Msa1438280:three_prime_UTR | 65.0% | |
| TTTCCGGCCGCCGTAGCCTT+GGG | + | tig0028533:32760-32779 | None:intergenic | 65.0% | |
| ATTTCCGGCCGCCGTAGCCT+TGG | + | tig0028533:32761-32780 | None:intergenic | 65.0% | |
| ! | GCCGTAGCCTTGGGTGGTCG+CGG | + | tig0028533:32751-32770 | None:intergenic | 70.0% |
| GCGACCACCCAAGGCTACGG+CGG | - | tig0028533:32750-32769 | Msa1438280:three_prime_UTR | 70.0% | |
| CCACCCAAGGCTACGGCGGC+CGG | - | tig0028533:32754-32773 | Msa1438280:three_prime_UTR | 75.0% | |
| !! | CCGGCCGCCGTAGCCTTGGG+TGG | + | tig0028533:32757-32776 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0028533 | gene | 32587 | 37531 | 32587 | ID=Msa1438280;Name=Msa1438280 |
| tig0028533 | mRNA | 32587 | 37531 | 32587 | ID=Msa1438280-mRNA-1;Parent=Msa1438280;Name=Msa1438280-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0.75|0.55|1|0.87|0.77|9|286|416 |
| tig0028533 | exon | 32587 | 32971 | 32587 | ID=Msa1438280-mRNA-1:exon:11170;Parent=Msa1438280-mRNA-1 |
| tig0028533 | exon | 33321 | 33416 | 33321 | ID=Msa1438280-mRNA-1:exon:11169;Parent=Msa1438280-mRNA-1 |
| tig0028533 | exon | 33717 | 33869 | 33717 | ID=Msa1438280-mRNA-1:exon:11168;Parent=Msa1438280-mRNA-1 |
| tig0028533 | exon | 35175 | 35231 | 35175 | ID=Msa1438280-mRNA-1:exon:11167;Parent=Msa1438280-mRNA-1 |
| tig0028533 | exon | 35845 | 35934 | 35845 | ID=Msa1438280-mRNA-1:exon:11166;Parent=Msa1438280-mRNA-1 |
| tig0028533 | exon | 36330 | 36509 | 36330 | ID=Msa1438280-mRNA-1:exon:11165;Parent=Msa1438280-mRNA-1 |
| tig0028533 | exon | 36604 | 36659 | 36604 | ID=Msa1438280-mRNA-1:exon:11164;Parent=Msa1438280-mRNA-1 |
| tig0028533 | exon | 36918 | 37126 | 36918 | ID=Msa1438280-mRNA-1:exon:11163;Parent=Msa1438280-mRNA-1 |
| tig0028533 | exon | 37221 | 37531 | 37221 | ID=Msa1438280-mRNA-1:exon:11162;Parent=Msa1438280-mRNA-1 |
| tig0028533 | CDS | 37221 | 37531 | 37221 | ID=Msa1438280-mRNA-1:cds;Parent=Msa1438280-mRNA-1 |
| tig0028533 | CDS | 36918 | 37126 | 36918 | ID=Msa1438280-mRNA-1:cds;Parent=Msa1438280-mRNA-1 |
| tig0028533 | CDS | 36604 | 36659 | 36604 | ID=Msa1438280-mRNA-1:cds;Parent=Msa1438280-mRNA-1 |
| tig0028533 | CDS | 36330 | 36509 | 36330 | ID=Msa1438280-mRNA-1:cds;Parent=Msa1438280-mRNA-1 |
| tig0028533 | CDS | 35845 | 35934 | 35845 | ID=Msa1438280-mRNA-1:cds;Parent=Msa1438280-mRNA-1 |
| tig0028533 | CDS | 35175 | 35231 | 35175 | ID=Msa1438280-mRNA-1:cds;Parent=Msa1438280-mRNA-1 |
| tig0028533 | CDS | 33717 | 33869 | 33717 | ID=Msa1438280-mRNA-1:cds;Parent=Msa1438280-mRNA-1 |
| tig0028533 | CDS | 33321 | 33416 | 33321 | ID=Msa1438280-mRNA-1:cds;Parent=Msa1438280-mRNA-1 |
| tig0028533 | CDS | 32873 | 32971 | 32873 | ID=Msa1438280-mRNA-1:cds;Parent=Msa1438280-mRNA-1 |
| tig0028533 | three_prime_UTR | 32587 | 32872 | 32587 | ID=Msa1438280-mRNA-1:three_prime_utr;Parent=Msa1438280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
