AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0699600

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0699600 MtrunA17_Chr8g0375571 77.941 272 45 2 7 264 1 271 2.41e-156 439
Msa0699600 MtrunA17_Chr8g0375671 61.567 268 88 2 11 264 12 278 1.37e-118 344
Msa0699600 MtrunA17_Chr8g0375601 59.273 275 93 4 7 264 1 273 4.94e-110 322
Msa0699600 MtrunA17_Chr8g0365241 58.209 268 94 3 11 264 17 280 8.83e-104 306
Msa0699600 MtrunA17_Chr5g0420951 55.224 268 103 2 11 264 12 276 1.98e-103 305
Msa0699600 MtrunA17_Chr5g0423251 56.716 268 97 3 11 264 7 269 1.28e-102 303
Msa0699600 MtrunA17_Chr5g0420941 54.412 272 105 3 7 264 1 267 2.44e-102 302
Msa0699600 MtrunA17_Chr5g0420901 53.480 273 107 4 7 264 1 268 9.29e-102 301
Msa0699600 MtrunA17_Chr5g0421101 53.846 273 107 3 6 264 2 269 4.41e-101 299
Msa0699600 MtrunA17_Chr5g0421091 54.212 273 105 4 7 264 1 268 6.39e-101 299
Msa0699600 MtrunA17_Chr2g0314401 53.731 268 107 3 11 264 11 275 7.11e-101 298
Msa0699600 MtrunA17_Chr5g0421041 55.224 268 99 3 11 264 7 267 8.57e-101 298
Msa0699600 MtrunA17_Chr5g0420981 55.970 268 101 2 11 264 12 276 5.49e-100 296
Msa0699600 MtrunA17_Chr5g0421011 55.970 268 99 3 11 264 7 269 7.24e-100 296
Msa0699600 MtrunA17_Chr5g0423201 54.015 274 106 4 6 264 2 270 1.80e-99 295
Msa0699600 MtrunA17_Chr5g0423191 56.343 268 98 3 11 264 7 269 3.21e-99 294
Msa0699600 MtrunA17_Chr5g0423221 51.799 278 114 4 2 264 22 294 6.42e-98 292
Msa0699600 MtrunA17_Chr2g0314381 50.929 269 114 4 11 264 36 301 2.51e-94 283
Msa0699600 MtrunA17_Chr2g0314391 51.866 268 112 3 11 264 30 294 8.89e-93 279
Msa0699600 MtrunA17_Chr2g0314371 47.766 291 112 5 11 264 11 298 1.50e-92 277
Msa0699600 MtrunA17_Chr1g0162191 52.045 269 108 3 11 265 11 272 2.10e-92 277
Msa0699600 MtrunA17_Chr5g0423211 50.000 270 113 4 12 264 8 272 7.02e-90 271
Msa0699600 MtrunA17_Chr8g0375681 59.474 190 77 0 76 265 18 207 4.68e-83 251
Msa0699600 MtrunA17_Chr5g0420721 62.874 167 62 0 98 264 5 171 3.37e-75 230
Msa0699600 MtrunA17_Chr8g0375591 84.733 131 6 1 7 123 1 131 7.72e-72 217
Msa0699600 MtrunA17_Chr3g0087031 44.195 267 134 3 11 264 18 282 1.42e-71 224
Msa0699600 MtrunA17_Chr8g0375701 40.840 262 136 3 17 264 20 276 3.12e-68 215
Msa0699600 MtrunA17_Chr8g0375641 57.862 159 52 2 11 155 12 169 2.04e-58 184
Msa0699600 MtrunA17_Chr8g0375661 56.604 159 54 2 11 155 12 169 3.83e-57 181
Msa0699600 MtrunA17_Chr7g0239101 33.935 277 165 2 2 264 5 277 6.22e-57 186
Msa0699600 MtrunA17_Chr7g0239111 33.935 277 165 2 2 264 5 277 7.14e-56 184
Msa0699600 MtrunA17_Chr8g0375581 95.349 86 4 0 176 261 1 86 1.74e-55 174
Msa0699600 MtrunA17_Chr7g0239121 33.829 269 159 3 11 264 10 274 5.04e-54 179
Msa0699600 MtrunA17_Chr7g0232161 34.328 268 158 3 11 264 19 282 1.06e-53 177
Msa0699600 MtrunA17_Chr7g0239821 35.338 266 152 4 14 264 26 286 1.65e-53 177
Msa0699600 MtrunA17_Chr2g0296371 36.466 266 152 3 14 264 14 277 1.86e-53 177
Msa0699600 MtrunA17_Chr3g0145171 36.462 277 155 5 6 264 4 277 2.08e-52 174
Msa0699600 MtrunA17_Chr7g0242551 34.815 270 153 4 17 264 15 283 5.99e-48 163
Msa0699600 MtrunA17_Chr5g0420891 49.367 158 61 3 12 155 7 159 4.00e-46 152
Msa0699600 MtrunA17_Chr4g0006371 33.813 278 154 5 17 264 14 291 4.55e-46 158
Msa0699600 MtrunA17_Chr5g0437181 32.453 265 161 3 17 264 14 277 1.19e-44 154
Msa0699600 MtrunA17_Chr3g0113641 30.566 265 166 3 17 264 15 278 4.00e-44 153
Msa0699600 MtrunA17_Chr8g0370721 34.050 279 163 5 4 264 2 277 1.48e-43 151
Msa0699600 MtrunA17_Chr7g0239071 34.392 189 124 0 76 264 34 222 2.07e-43 150
Msa0699600 MtrunA17_Chr8g0370711 34.050 279 163 5 4 264 2 277 2.41e-43 151
Msa0699600 MtrunA17_Chr5g0398291 31.250 272 161 6 17 264 8 277 9.72e-40 141
Msa0699600 MtrunA17_Chr3g0109041 30.605 281 165 7 17 274 10 283 1.95e-39 140
Msa0699600 MtrunA17_Chr4g0064781 30.741 270 160 5 12 264 12 271 2.97e-39 140
Msa0699600 MtrunA17_Chr1g0162351 34.538 249 122 10 52 264 69 312 6.19e-37 135
Msa0699600 MtrunA17_Chr7g0239091 30.943 265 153 7 15 264 123 372 8.58e-37 135
Msa0699600 MtrunA17_Chr3g0145181 32.472 271 156 7 16 264 12 277 8.94e-37 134
Msa0699600 MtrunA17_Chr3g0128001 31.890 254 150 6 26 264 13 258 9.25e-37 133
Msa0699600 MtrunA17_Chr1g0162321 34.538 249 122 10 52 264 69 312 1.68e-36 134
Msa0699600 MtrunA17_Chr5g0426891 31.970 269 154 9 16 264 3 262 7.19e-36 131
Msa0699600 MtrunA17_Chr4g0045411 36.364 242 120 9 52 264 30 266 1.23e-35 130
Msa0699600 MtrunA17_Chr1g0162361 36.585 246 112 12 51 264 26 259 3.84e-33 124
Msa0699600 MtrunA17_Chr4g0045441 35.060 251 116 11 52 264 26 267 2.42e-32 122
Msa0699600 MtrunA17_Chr3g0114871 31.034 261 165 7 17 264 7 265 3.83e-32 119
Msa0699600 MtrunA17_Chr2g0289341 30.544 239 127 7 49 264 1 223 6.30e-32 120
Msa0699600 MtrunA17_Chr2g0311761 28.788 264 168 4 16 264 32 290 8.59e-32 120
Msa0699600 MtrunA17_Chr8g0345831 30.483 269 166 6 11 264 2 264 8.69e-32 120
Msa0699600 MtrunA17_Chr3g0145201 31.915 235 134 6 51 264 683 912 1.92e-31 123
Msa0699600 MtrunA17_Chr8g0336781 30.263 228 140 4 52 264 95 318 3.45e-31 119
Msa0699600 MtrunA17_Chr1g0179801 27.817 284 171 8 8 264 18 294 4.31e-31 119
Msa0699600 MtrunA17_Chr3g0125201 30.290 241 139 6 52 273 3 233 9.00e-31 117
Msa0699600 MtrunA17_Chr4g0045471 33.600 250 122 11 52 264 26 268 1.31e-30 117
Msa0699600 MtrunA17_Chr4g0045451 33.068 251 121 10 52 264 26 267 2.34e-30 116
Msa0699600 MtrunA17_Chr8g0336851 30.380 237 143 6 43 264 53 282 3.97e-30 116
Msa0699600 MtrunA17_Chr3g0126741 29.520 271 166 7 14 265 20 284 4.16e-30 116
Msa0699600 MtrunA17_Chr7g0265221 28.990 307 163 12 1 264 7 301 4.37e-30 116
Msa0699600 MtrunA17_Chr8g0348081 30.263 228 139 4 52 264 60 282 6.38e-30 115
Msa0699600 MtrunA17_Chr1g0187831 28.889 270 159 11 25 271 40 299 1.17e-29 115
Msa0699600 MtrunA17_Chr2g0311921 26.894 264 173 4 16 264 18 276 1.22e-29 114
Msa0699600 MtrunA17_Chr4g0066121 28.571 266 164 7 16 264 27 283 1.45e-29 114
Msa0699600 MtrunA17_Chr1g0187821 30.924 249 136 9 46 271 61 296 1.85e-29 114
Msa0699600 MtrunA17_Chr8g0351101 29.457 258 158 6 25 262 30 283 2.34e-29 114
Msa0699600 MtrunA17_Chr8g0336761 30.435 230 136 6 52 264 60 282 4.91e-29 113
Msa0699600 MtrunA17_Chr4g0045431 32.258 248 127 9 52 264 26 267 1.24e-28 112
Msa0699600 MtrunA17_Chr7g0220001 31.102 254 152 8 26 264 16 261 1.62e-28 111
Msa0699600 MtrunA17_Chr8g0336861 29.555 247 143 6 38 264 48 283 1.91e-28 111
Msa0699600 MtrunA17_Chr5g0420881 66.154 65 22 0 200 264 1 65 2.22e-28 106
Msa0699600 MtrunA17_Chr5g0424201 33.505 194 122 4 76 264 76 267 9.05e-28 109
Msa0699600 MtrunA17_Chr2g0311831 27.437 277 177 6 3 264 22 289 9.29e-28 110
Msa0699600 MtrunA17_Chr1g0187811 27.536 276 158 11 25 271 155 417 9.45e-28 111
Msa0699600 MtrunA17_Chr2g0311681 29.259 270 159 10 16 264 26 284 9.51e-28 110
Msa0699600 MtrunA17_Chr8g0371921 30.973 226 138 4 51 260 38 261 1.57e-27 109
Msa0699600 MtrunA17_Chr7g0250511 27.037 270 166 8 16 264 13 272 1.67e-27 108
Msa0699600 MtrunA17_Chr1g0204181 26.744 258 162 6 27 262 37 289 1.82e-27 109
Msa0699600 MtrunA17_Chr5g0424211 28.676 272 166 7 14 264 3 267 2.58e-27 108
Msa0699600 MtrunA17_Chr8g0371931 30.837 227 137 5 51 260 38 261 3.27e-27 108
Msa0699600 MtrunA17_Chr8g0336751 29.057 265 165 8 16 264 58 315 7.23e-27 108
Msa0699600 MtrunA17_Chr1g0167911 28.897 263 166 5 16 264 19 274 8.74e-27 107
Msa0699600 MtrunA17_Chr1g0184101 28.195 266 159 11 24 268 10 264 1.82e-26 105
Msa0699600 MtrunA17_Chr2g0311711 27.798 277 169 9 16 271 30 296 2.07e-26 106
Msa0699600 MtrunA17_Chr5g0412671 30.224 268 159 10 19 264 5 266 2.26e-26 105
Msa0699600 MtrunA17_Chr1g0184161 29.885 261 152 10 24 264 11 260 3.06e-26 105
Msa0699600 MtrunA17_Chr6g0474391 27.692 260 157 8 27 262 42 294 5.58e-26 105
Msa0699600 MtrunA17_Chr1g0184151 28.682 258 151 9 28 264 15 260 6.12e-26 104
Msa0699600 MtrunA17_Chr1g0148771 30.472 233 135 7 52 268 63 284 6.48e-26 104
Msa0699600 MtrunA17_Chr3g0102041 28.634 227 142 5 51 260 38 261 6.76e-26 104
Msa0699600 MtrunA17_Chr4g0011311 25.461 271 168 8 16 265 32 289 7.07e-26 103
Msa0699600 MtrunA17_Chr2g0311741 27.542 236 150 5 44 264 19 248 7.25e-26 103
Msa0699600 MtrunA17_Chr5g0439011 29.956 227 136 7 53 264 6 224 1.14e-25 103
Msa0699600 MtrunA17_Chr2g0311861 27.600 250 168 5 16 264 28 265 1.20e-25 103
Msa0699600 MtrunA17_Chr3g0121141 27.917 240 132 7 49 264 1 223 1.20e-25 103
Msa0699600 MtrunA17_Chr5g0412651 29.851 268 160 10 19 264 5 266 1.89e-25 103
Msa0699600 MtrunA17_Chr8g0364471 25.283 265 174 7 16 264 32 288 3.60e-25 102
Msa0699600 MtrunA17_Chr2g0332191 29.643 280 145 13 23 271 23 281 3.70e-25 102
Msa0699600 MtrunA17_Chr1g0167951 26.236 263 172 5 16 264 19 273 5.64e-25 102
Msa0699600 MtrunA17_Chr3g0125421 26.641 259 162 8 26 262 14 266 7.11e-25 102
Msa0699600 MtrunA17_Chr4g0050031 28.740 254 147 8 30 264 48 286 7.78e-25 102
Msa0699600 MtrunA17_Chr8g0354261 26.119 268 171 7 16 264 32 291 8.00e-25 102
Msa0699600 MtrunA17_Chr1g0167961 27.652 264 167 7 16 263 34 289 9.44e-25 101
Msa0699600 MtrunA17_Chr3g0114861 29.204 226 144 6 52 264 40 262 1.14e-24 100
Msa0699600 MtrunA17_Chr5g0412681 31.197 234 127 8 52 264 33 253 1.56e-24 100
Msa0699600 MtrunA17_Chr4g0045461 31.818 242 135 7 52 264 26 266 1.69e-24 101
Msa0699600 MtrunA17_Chr3g0130391 25.182 274 180 4 27 279 44 313 3.26e-24 100
Msa0699600 MtrunA17_Chr2g0311691 28.309 272 159 10 16 264 26 284 3.51e-24 100
Msa0699600 MtrunA17_Chr2g0319521 38.655 119 72 1 154 272 15 132 3.64e-24 95.1
Msa0699600 MtrunA17_Chr2g0311701 28.417 278 166 10 16 271 32 298 5.20e-24 99.8
Msa0699600 MtrunA17_Chr5g0405411 29.515 227 140 5 51 260 38 261 7.05e-24 99.4
Msa0699600 MtrunA17_Chr7g0220011 39.655 116 69 1 149 264 145 259 8.61e-24 98.6
Msa0699600 MtrunA17_Chr7g0235951 25.746 268 169 8 16 264 32 288 2.66e-23 97.8
Msa0699600 MtrunA17_Chr8g0336631 28.821 229 142 5 52 264 60 283 4.26e-23 97.1
Msa0699600 MtrunA17_Chr8g0354241 26.493 268 170 7 16 264 32 291 5.06e-23 97.1
Msa0699600 MtrunA17_Chr4g0055591 25.651 269 165 9 16 264 24 277 6.45e-23 96.7
Msa0699600 MtrunA17_Chr1g0184121 27.652 264 159 10 22 264 8 260 1.02e-22 95.9
Msa0699600 MtrunA17_Chr7g0219991 44.118 102 56 1 161 262 254 354 1.29e-22 95.5
Msa0699600 MtrunA17_Chr6g0455481 29.502 261 148 11 26 264 17 263 2.39e-22 94.7
Msa0699600 MtrunA17_Chr6g0488511 30.769 234 129 9 52 264 3 224 5.89e-22 93.2
Msa0699600 MtrunA17_Chr1g0184111 26.996 263 162 9 22 264 8 260 7.06e-22 93.6
Msa0699600 MtrunA17_Chr8g0362741 26.087 253 174 7 16 265 32 274 2.57e-21 90.9
Msa0699600 MtrunA17_Chr7g0225881 26.136 264 175 7 16 264 27 285 4.17e-21 91.7
Msa0699600 MtrunA17_Chr2g0319491 28.283 198 132 4 76 271 70 259 6.80e-21 90.5
Msa0699600 MtrunA17_Chr6g0472861 25.651 269 175 5 16 264 27 290 1.36e-20 90.1
Msa0699600 MtrunA17_Chr1g0170631 41.071 112 62 2 155 264 3 112 1.78e-20 86.7
Msa0699600 MtrunA17_Chr1g0191201 25.385 260 162 8 27 262 32 283 3.00e-20 89.4
Msa0699600 MtrunA17_Chr5g0420731 62.500 72 22 2 11 82 7 73 3.26e-20 83.6
Msa0699600 MtrunA17_Chr7g0235981 23.500 200 142 3 65 264 54 242 4.72e-20 88.2
Msa0699600 MtrunA17_Chr1g0167931 28.226 248 147 7 16 263 19 235 5.76e-20 87.8
Msa0699600 MtrunA17_Chr7g0266651 22.472 267 179 6 16 264 23 279 6.42e-20 88.2
Msa0699600 MtrunA17_Chr1g0161081 27.675 271 159 9 16 264 36 291 9.33e-20 87.8
Msa0699600 MtrunA17_Chr1g0161111 27.170 265 168 7 16 264 95 350 9.62e-20 88.2
Msa0699600 MtrunA17_Chr3g0093761 28.625 269 161 11 16 264 17 274 1.41e-19 87.0
Msa0699600 MtrunA17_Chr1g0161041 26.038 265 171 7 16 264 59 314 2.22e-19 87.0
Msa0699600 MtrunA17_Chr8g0364171 36.538 104 65 1 161 264 24 126 3.45e-19 82.0
Msa0699600 MtrunA17_Chr2g0313111 29.310 232 145 8 46 264 22 247 4.31e-19 85.5
Msa0699600 MtrunA17_Chr4g0064771 37.500 112 65 2 156 264 27 136 6.29e-19 82.8
Msa0699600 MtrunA17_Chr2g0285931 27.426 237 150 8 46 264 22 254 7.45e-19 85.1
Msa0699600 MtrunA17_Chr1g0167921 32.609 138 85 4 141 271 29 165 1.30e-18 81.3
Msa0699600 MtrunA17_Chr3g0093741 28.519 270 161 11 16 264 17 275 1.41e-18 84.3
Msa0699600 MtrunA17_Chr8g0375621 61.111 54 21 0 176 229 1 54 2.23e-18 77.4
Msa0699600 MtrunA17_Chr5g0394071 39.252 107 64 1 158 264 5 110 2.39e-18 80.9
Msa0699600 MtrunA17_Chr3g0126761 37.736 106 63 2 161 264 50 154 5.04e-18 80.9
Msa0699600 MtrunA17_Chr4g0075471 46.575 73 36 1 192 264 24 93 6.28e-18 79.0
Msa0699600 MtrunA17_Chr8g0335411 24.561 285 179 10 16 277 32 303 1.02e-17 82.0
Msa0699600 MtrunA17_Chr1g0184241 25.000 272 165 8 16 264 33 288 1.12e-17 82.0
Msa0699600 MtrunA17_Chr4g0066991 25.692 253 168 8 16 264 32 268 1.87e-17 81.3
Msa0699600 MtrunA17_Chr3g0105281 29.778 225 124 8 65 264 37 252 2.77e-17 80.5
Msa0699600 MtrunA17_Chr3g0093751 28.148 270 162 12 16 264 17 275 3.03e-17 80.5
Msa0699600 MtrunA17_Chr2g0311631 26.619 278 159 9 16 264 21 282 6.47e-17 79.7
Msa0699600 MtrunA17_Chr7g0247991 23.551 276 165 10 16 264 32 288 7.85e-17 79.7
Msa0699600 MtrunA17_Chr7g0236011 23.019 265 180 8 16 264 32 288 5.09e-16 77.4
Msa0699600 MtrunA17_Chr4g0037611 41.584 101 50 5 172 264 1 100 1.75e-15 72.8
Msa0699600 MtrunA17_Chr7g0233661 48.571 70 35 1 195 264 16 84 1.86e-15 72.4
Msa0699600 MtrunA17_Chr7g0265351 27.935 247 143 10 45 268 32 266 2.76e-15 74.7
Msa0699600 MtrunA17_Chr2g0311611 40.278 72 35 2 200 264 1 71 1.20e-14 67.4
Msa0699600 MtrunA17_Chr4g0068891 36.719 128 71 6 146 264 116 242 1.23e-14 72.8
Msa0699600 MtrunA17_Chr8g0358941 26.250 240 140 9 51 264 26 254 4.19e-14 71.2
Msa0699600 MtrunA17_Chr2g0293931 36.134 119 65 4 156 264 8 125 4.35e-14 69.7
Msa0699600 MtrunA17_Chr8g0336801 46.875 64 33 1 201 264 12 74 7.08e-14 67.8
Msa0699600 MtrunA17_Chr8g0336871 36.264 91 57 1 168 258 3 92 1.73e-13 67.0
Msa0699600 MtrunA17_Chr8g0336831 23.636 220 147 5 16 220 27 240 1.96e-13 68.6
Msa0699600 MtrunA17_Chr4g0053251 27.193 228 142 7 54 264 31 251 2.98e-12 65.9
Msa0699600 MtrunA17_Chr4g0052251 26.500 200 132 7 76 264 58 253 5.82e-12 65.1
Msa0699600 MtrunA17_Chr1g0158021 24.675 231 146 9 44 256 41 261 3.76e-11 62.0
Msa0699600 MtrunA17_Chr7g0247741 25.847 236 151 9 46 264 5 233 4.12e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0699600 AT1G17020.1 48.708 271 120 4 11 264 11 279 4.95e-90 271
Msa0699600 AT4G25300.1 47.232 271 123 5 11 264 10 277 3.63e-82 251
Msa0699600 AT4G25310.1 47.122 278 128 6 2 264 1 274 7.82e-82 250
Msa0699600 AT1G17010.1 47.232 271 124 5 11 264 11 279 2.68e-80 247
Msa0699600 AT1G78550.1 44.238 269 133 3 11 264 11 277 5.29e-79 243
Msa0699600 AT1G78550.2 48.148 189 98 0 76 264 11 199 1.22e-65 206
Msa0699600 AT4G25310.2 41.155 277 120 5 2 265 1 247 4.33e-62 199
Msa0699600 AT3G21420.1 40.876 274 144 5 9 264 9 282 7.66e-60 194
Msa0699600 AT2G38240.1 34.831 267 151 4 16 264 11 272 3.52e-51 172
Msa0699600 AT5G05600.2 31.522 276 171 3 6 264 16 290 5.09e-47 159
Msa0699600 AT5G05600.1 31.071 280 175 3 6 268 16 294 2.63e-46 159
Msa0699600 AT1G49390.1 33.582 268 155 7 16 264 8 271 8.83e-43 149
Msa0699600 AT3G11180.1 30.769 273 163 5 17 268 56 323 1.33e-41 147
Msa0699600 AT3G11180.2 30.769 273 163 5 17 268 56 323 1.60e-41 147
Msa0699600 AT3G55970.2 31.227 269 164 4 17 264 14 282 7.46e-41 143
Msa0699600 AT4G22880.1 30.216 278 167 6 12 264 2 277 3.71e-40 143
Msa0699600 AT4G22880.2 30.216 278 167 6 12 264 2 277 3.71e-40 143
Msa0699600 AT4G22880.3 30.216 278 167 6 12 264 2 277 3.71e-40 143
Msa0699600 AT3G55970.1 30.769 273 168 4 17 268 14 286 4.25e-40 143
Msa0699600 AT5G20400.1 31.955 266 162 6 16 264 8 271 1.12e-39 141
Msa0699600 AT5G24530.1 35.039 254 142 6 26 264 13 258 1.13e-39 141
Msa0699600 AT5G54000.2 33.708 267 157 7 16 264 8 272 8.93e-39 139
Msa0699600 AT1G49390.2 34.896 192 120 2 76 264 3 192 4.96e-38 135
Msa0699600 AT4G25300.2 52.212 113 51 2 154 264 72 183 3.84e-36 130
Msa0699600 AT5G20550.1 30.970 268 163 7 16 264 8 272 7.39e-35 129
Msa0699600 AT4G10490.1 30.980 255 156 6 25 264 15 264 1.51e-34 128
Msa0699600 AT5G54000.1 33.684 190 125 1 76 264 3 192 1.98e-34 125
Msa0699600 AT4G16330.2 33.333 228 132 5 56 264 63 289 4.11e-34 127
Msa0699600 AT2G36690.2 30.627 271 160 8 16 264 20 284 1.33e-33 125
Msa0699600 AT2G36690.1 30.627 271 160 8 16 264 20 284 1.33e-33 125
Msa0699600 AT3G19010.2 31.557 244 131 10 51 264 27 264 4.76e-32 120
Msa0699600 AT1G77330.1 31.489 235 128 6 52 264 3 226 4.84e-32 120
Msa0699600 AT3G19000.2 33.471 242 130 8 51 264 31 269 7.04e-32 119
Msa0699600 AT4G16330.1 39.355 155 91 2 112 264 30 183 7.75e-32 119
Msa0699600 AT4G10500.1 29.688 256 160 5 24 264 16 266 8.63e-32 120
Msa0699600 AT3G19010.1 31.148 244 132 10 51 264 27 264 2.70e-31 119
Msa0699600 AT3G19010.4 31.148 244 132 10 51 264 27 264 2.70e-31 119
Msa0699600 AT3G19000.1 33.471 242 130 8 51 264 31 269 4.57e-31 119
Msa0699600 AT2G30830.1 28.788 264 166 5 16 264 20 276 1.11e-30 118
Msa0699600 AT4G25420.2 26.217 267 167 4 26 269 38 297 4.48e-30 115
Msa0699600 AT1G60980.1 29.032 279 166 6 27 279 35 307 1.01e-29 115
Msa0699600 AT5G08640.2 26.199 271 184 7 14 269 3 272 1.59e-29 114
Msa0699600 AT5G08640.1 26.199 271 184 7 14 269 3 272 1.59e-29 114
Msa0699600 AT4G25420.1 26.154 260 162 4 26 262 38 290 4.82e-29 114
Msa0699600 AT1G12010.1 29.437 231 136 5 51 264 6 226 5.88e-29 112
Msa0699600 AT1G06640.2 28.000 275 159 7 16 264 25 286 1.66e-28 111
Msa0699600 AT1G06620.2 29.167 264 166 5 16 264 26 283 1.70e-28 110
Msa0699600 AT1G06640.1 28.000 275 159 7 16 264 25 286 1.91e-28 112
Msa0699600 AT1G06640.3 27.941 272 157 7 16 261 25 283 2.82e-28 110
Msa0699600 AT1G03410.1 27.715 267 169 6 16 264 56 316 2.95e-28 112
Msa0699600 AT1G03410.2 27.715 267 169 6 16 264 19 279 3.13e-28 111
Msa0699600 AT1G06620.1 29.167 264 166 5 16 264 26 283 4.47e-28 111
Msa0699600 AT5G51810.2 27.237 257 163 7 26 264 40 290 1.21e-27 108
Msa0699600 AT1G62380.1 27.155 232 140 6 51 264 6 226 1.36e-27 108
Msa0699600 AT1G55290.1 29.924 264 164 10 16 264 25 282 1.71e-27 109
Msa0699600 AT3G51240.1 30.916 262 158 7 16 260 5 260 1.81e-27 109
Msa0699600 AT5G07200.1 28.846 260 155 6 27 262 36 289 1.89e-27 109
Msa0699600 AT5G59540.2 27.985 268 167 7 16 264 24 284 2.37e-27 107
Msa0699600 AT1G05010.1 27.897 233 141 5 49 264 1 223 3.95e-27 107
Msa0699600 AT1G06650.1 26.882 279 165 7 16 268 25 290 4.96e-27 107
Msa0699600 AT5G51810.1 27.138 269 168 8 12 262 30 288 6.34e-27 108
Msa0699600 AT1G06650.2 26.909 275 162 7 16 264 25 286 1.13e-26 107
Msa0699600 AT5G59540.1 27.612 268 168 7 16 264 24 284 3.53e-26 105
Msa0699600 AT1G03400.2 27.719 285 167 10 16 279 19 285 5.26e-26 105
Msa0699600 AT1G15550.1 27.106 273 147 9 24 264 26 278 7.65e-26 105
Msa0699600 AT1G80330.1 27.757 263 164 7 24 264 15 273 9.56e-26 104
Msa0699600 AT1G03400.1 27.715 267 159 8 16 264 19 269 2.08e-25 103
Msa0699600 AT3G13610.1 28.947 266 163 9 16 264 26 282 2.19e-25 103
Msa0699600 AT1G04380.2 30.859 256 147 9 26 264 21 263 5.66e-25 100
Msa0699600 AT3G51240.2 33.333 177 115 2 86 260 1 176 8.96e-25 100
Msa0699600 AT5G43440.2 25.271 277 175 8 16 269 23 290 2.58e-24 99.8
Msa0699600 AT1G04380.1 30.469 256 148 9 26 264 21 263 6.29e-24 99.8
Msa0699600 AT2G19590.1 30.342 234 129 9 51 264 10 229 6.50e-24 99.0
Msa0699600 AT2G30840.2 30.808 198 122 6 76 266 96 285 7.41e-24 98.6
Msa0699600 AT1G44090.1 26.136 264 162 9 23 262 38 292 7.65e-24 99.8
Msa0699600 AT5G43440.1 24.815 270 173 7 16 264 23 283 1.36e-23 99.0
Msa0699600 AT3G61400.2 26.545 275 176 7 16 269 24 293 1.83e-23 97.4
Msa0699600 AT4G21200.1 29.825 228 138 4 51 264 41 260 1.85e-23 98.2
Msa0699600 AT1G06645.1 26.740 273 162 8 16 264 38 296 2.65e-23 98.2
Msa0699600 AT2G30840.1 30.570 193 122 5 76 264 96 280 3.12e-23 97.8
Msa0699600 AT5G59530.1 26.592 267 171 7 16 264 23 282 3.42e-23 97.8
Msa0699600 AT2G30840.3 30.729 192 121 5 76 263 96 279 3.92e-23 97.4
Msa0699600 AT1G80340.1 28.731 268 139 12 27 264 26 271 8.09e-23 96.7
Msa0699600 AT5G63590.1 32.184 174 109 4 93 260 63 233 9.52e-23 95.9
Msa0699600 AT1G04350.1 26.966 267 167 8 16 264 21 277 3.19e-22 95.1
Msa0699600 AT2G44800.1 29.078 282 174 10 2 264 1 275 4.21e-22 94.7
Msa0699600 AT3G19010.3 28.689 244 108 11 51 264 27 234 4.65e-22 94.0
Msa0699600 AT3G61400.1 26.296 270 173 7 16 264 24 288 4.93e-22 94.7
Msa0699600 AT5G43450.2 25.000 268 172 8 16 264 23 280 7.71e-22 92.8
Msa0699600 AT3G12900.1 33.505 194 117 8 76 264 91 277 1.26e-21 93.2
Msa0699600 AT3G60290.1 28.671 286 170 10 2 264 1 275 1.48e-21 93.2
Msa0699600 AT5G12270.1 28.261 276 165 9 24 276 29 294 1.51e-21 93.2
Msa0699600 AT2G19590.2 30.303 198 115 7 76 264 31 214 2.09e-21 91.7
Msa0699600 AT5G43450.1 25.000 268 172 8 16 264 23 280 2.10e-21 92.8
Msa0699600 AT2G25450.1 26.616 263 173 6 16 264 20 276 6.49e-21 91.3
Msa0699600 AT1G78440.1 28.870 239 145 10 45 264 11 243 5.13e-19 85.9
Msa0699600 AT5G07480.1 26.394 269 160 9 22 264 18 274 5.18e-19 85.9
Msa0699600 AT5G63580.2 26.271 236 159 5 42 265 9 241 7.51e-19 84.0
Msa0699600 AT5G63600.2 28.125 192 131 4 76 265 65 251 2.14e-17 81.3
Msa0699600 AT5G63580.1 25.974 231 156 5 42 260 9 236 3.22e-17 79.3
Msa0699600 AT5G63600.1 28.042 189 129 4 76 262 65 248 3.71e-17 80.5
Msa0699600 AT1G50960.1 26.432 227 150 6 51 264 39 261 5.13e-17 80.1
Msa0699600 AT1G30040.2 27.313 227 147 9 52 264 31 253 1.73e-16 77.8
Msa0699600 AT1G30040.1 27.313 227 147 9 52 264 31 253 4.75e-16 77.4
Msa0699600 AT5G07480.2 29.167 144 88 4 133 264 24 165 5.88e-16 75.9
Msa0699600 AT5G63595.1 27.411 197 123 6 76 271 57 234 4.60e-15 73.9
Msa0699600 AT2G34555.1 30.263 228 138 11 52 264 27 248 8.03e-15 73.9
Msa0699600 AT3G47190.1 24.194 248 131 9 52 264 32 257 9.01e-15 73.6
Msa0699600 AT3G49620.1 27.236 246 145 8 52 264 34 278 4.98e-13 68.9
Msa0699600 AT1G47990.1 29.286 140 81 6 140 264 103 239 9.09e-13 67.8
Msa0699600 AT1G02400.2 34.091 132 75 7 151 275 130 256 1.92e-11 63.5
Msa0699600 AT3G50210.2 32.812 128 80 3 143 264 48 175 2.73e-11 62.8
Msa0699600 AT3G50210.4 32.812 128 80 3 143 264 130 257 3.74e-11 63.2
Msa0699600 AT3G50210.1 32.812 128 80 3 143 264 130 257 3.74e-11 63.2
Msa0699600 AT3G50210.3 32.812 128 80 3 143 264 130 257 3.74e-11 63.2

Find 110 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTCTGGCTCAACTGAATA+TGG 0.215292 4_4:+70334579 None:intergenic
GCTAACATTGCTTGCATGTT+AGG 0.232431 4_4:+70334987 None:intergenic
AAGATCTTGGGACAACAATT+TGG 0.238023 4_4:+70337050 None:intergenic
GCATTAGGCATGGGTTTAAT+AGG 0.271956 4_4:+70335563 None:intergenic
AAGTCTCATTCTGATATTAA+TGG 0.272225 4_4:-70335653 Msa0699600:CDS
GTCCCTTGAGATTAAGATCT+TGG 0.291826 4_4:+70337037 None:intergenic
CATCAAAATGCTCGAACTTA+TGG 0.292768 4_4:-70335792 Msa0699600:CDS
GCCAATGACTCGTTCTGGTT+GGG 0.298583 4_4:+70335679 None:intergenic
GATAGACTATGAGGCATAAT+TGG 0.305639 4_4:+70334546 None:intergenic
CTCTAACAAGAACAGTTAAT+AGG 0.305739 4_4:-70334809 Msa0699600:three_prime_UTR
AATGCTTTCATCATCAATAT+TGG 0.306159 4_4:-70335545 Msa0699600:CDS
GAAGGAGACTTGGAGGGATT+TGG 0.312853 4_4:-70336539 Msa0699600:CDS
AGATAGAGAACCTGAATGTT+TGG 0.333144 4_4:+70336408 None:intergenic
AGGATAATAATTCACCCTTA+TGG 0.333631 4_4:+70335709 None:intergenic
AAAGAAACCCCATTCTTTGC+AGG 0.335772 4_4:+70336990 None:intergenic
ATTGGAGTAGAAATTTCTTC+TGG 0.336986 4_4:+70334564 None:intergenic
TATGGATATAAGATCTATTC+TGG 0.350399 4_4:-70337205 Msa0699600:CDS
TATTGACAGTTAAATTGCTT+TGG 0.352169 4_4:-70335355 Msa0699600:three_prime_UTR
GATAGAGAACCTGAATGTTT+GGG 0.362575 4_4:+70336409 None:intergenic
AACATTGTTTGAACTTTCAA+TGG 0.372915 4_4:-70336588 Msa0699600:CDS
GGGGATTTGGTTGAATATAT+GGG 0.386324 4_4:+70336430 None:intergenic
TCTAACAAGAACAGTTAATA+GGG 0.389963 4_4:-70334808 Msa0699600:three_prime_UTR
TAATATCAGAATGAGACTTT+AGG 0.391303 4_4:+70335657 None:intergenic
CTAACATTGCTTGCATGTTA+GGG 0.394361 4_4:+70334988 None:intergenic
AACACCTCAGTTATTTCCTT+GGG 0.402421 4_4:+70335749 None:intergenic
TTAAAATAAAGTAACTGAAA+TGG 0.406311 4_4:-70335109 Msa0699600:three_prime_UTR
CATAGGAACTCAAGCCATAA+GGG 0.408246 4_4:-70335723 Msa0699600:CDS
GGAGGGATGGACAGCTCATC+TGG 0.411494 4_4:+70335211 None:intergenic
TACACTCTGCCTGCAAAGAA+TGG 0.412113 4_4:-70336999 Msa0699600:CDS
TTTAGGCCAATGACTCGTTC+TGG 0.412626 4_4:+70335674 None:intergenic
AAACACCTCAGTTATTTCCT+TGG 0.429097 4_4:+70335748 None:intergenic
TAACCTTATCAACAAATGAT+TGG 0.430240 4_4:-70337311 None:intergenic
ACACTCTGCCTGCAAAGAAT+GGG 0.435389 4_4:-70336998 Msa0699600:CDS
TCCCTTGAGATTAAGATCTT+GGG 0.436513 4_4:+70337038 None:intergenic
GTATTCAGATGAACGTAGTA+TGG 0.437834 4_4:-70337223 Msa0699600:intron
CCAATGACTCGTTCTGGTTG+GGG 0.440939 4_4:+70335680 None:intergenic
CTTCAAATCAGCGATATAGA+AGG 0.444568 4_4:-70335617 Msa0699600:CDS
ACATAGGAACTCAAGCCATA+AGG 0.446381 4_4:-70335724 Msa0699600:CDS
CAATATTGGCGACATATTAG+AGG 0.453343 4_4:-70335531 Msa0699600:CDS
GGCCAATGACTCGTTCTGGT+TGG 0.456821 4_4:+70335678 None:intergenic
CCCCAACCAGAACGAGTCAT+TGG 0.461711 4_4:-70335680 Msa0699600:CDS
AGACTTGGAGGGATTTGGTC+AGG 0.466314 4_4:-70336534 Msa0699600:CDS
CTGGTTTGAGCTAAGGGAAA+AGG 0.473796 4_4:+70335230 None:intergenic
CTTTCTTGAGTAACAAGACT+TGG 0.475463 4_4:+70334957 None:intergenic
AGCTCATCTGGTTTGAGCTA+AGG 0.476689 4_4:+70335223 None:intergenic
ACTTGAGGTAAAGAAGAGGT+AGG 0.479675 4_4:+70337090 None:intergenic
CTGAAGAACAGAAACTAGAA+TGG 0.480542 4_4:-70336499 Msa0699600:CDS
AACATATCGCTCTGGAACAT+TGG 0.481320 4_4:+70337146 None:intergenic
CTATATCGCTGATTTGAAGA+AGG 0.483204 4_4:+70335621 None:intergenic
TTGCTCGATGCTCAATGCTT+GGG 0.484949 4_4:+70335057 None:intergenic
AGTACTACAGAGTCTTGATC+TGG 0.489953 4_4:+70337120 None:intergenic
ATTGCTCGATGCTCAATGCT+TGG 0.491845 4_4:+70335056 None:intergenic
ATATTGATGATGAAAGCATT+AGG 0.492606 4_4:+70335548 None:intergenic
AGTGTTGTAGATCACTTCAA+TGG 0.493470 4_4:-70334912 Msa0699600:three_prime_UTR
TCAACTGAATATGGAAAAGA+AGG 0.496661 4_4:+70334588 None:intergenic
CTGTTCTTCAGATAAAATGA+AGG 0.503417 4_4:+70336511 None:intergenic
GCTCATCTGGTTTGAGCTAA+GGG 0.503673 4_4:+70335224 None:intergenic
GCAGAAAGAAGGAGACTTGG+AGG 0.503765 4_4:-70336546 Msa0699600:CDS
CAAACACACAACGACACAAA+AGG 0.506634 4_4:+70335487 None:intergenic
TGTCCATCCCTCCATAGCTT+CGG 0.508521 4_4:-70335201 Msa0699600:three_prime_UTR
TGAGTAACAAGACTTGGTGC+TGG 0.514891 4_4:+70334963 None:intergenic
TTGTAACTTGATAGACTATG+AGG 0.515228 4_4:+70334537 None:intergenic
AGAGATATATTCTACAGAGT+TGG 0.515529 4_4:-70335825 Msa0699600:CDS
CTAATTCTTCTATACTGTGC+TGG 0.518608 4_4:+70334933 None:intergenic
AATGAAATGAAGATCACAAA+GGG 0.527814 4_4:-70334852 Msa0699600:three_prime_UTR
ATCATTCAGATTATAACGAA+TGG 0.531251 4_4:-70335086 Msa0699600:three_prime_UTR
GCTAAGGGAAAAGGAGTTGA+AGG 0.534681 4_4:+70335239 None:intergenic
AAGAAGCTATGGCAGAAAGA+AGG 0.537844 4_4:-70336557 Msa0699600:CDS
GGAAAAGGAGTTGAAGGTCA+TGG 0.538597 4_4:+70335245 None:intergenic
GTCCCAAGATCTTAATCTCA+AGG 0.539477 4_4:-70337040 Msa0699600:CDS
TGGAAGAAAAGAAGAAGCTA+TGG 0.539816 4_4:-70336568 Msa0699600:CDS
TAGTTTAGTTGCTATAGTGA+TGG 0.540826 4_4:-70335152 Msa0699600:three_prime_UTR
ATGGCAGAAAGAAGGAGACT+TGG 0.542561 4_4:-70336549 Msa0699600:CDS
TTTGCTAGCTCTTGAACAGA+GGG 0.549556 4_4:+70337180 None:intergenic
TGAAGAACAGAAACTAGAAT+GGG 0.550147 4_4:-70336498 Msa0699600:CDS
ATGATGAAAGCATTAGGCAT+GGG 0.551312 4_4:+70335554 None:intergenic
TCTGGAAGAACATATCGCTC+TGG 0.551453 4_4:+70337138 None:intergenic
CTTTGCTAGCTCTTGAACAG+AGG 0.551499 4_4:+70337179 None:intergenic
TGCTCTTGCAATAAATCCCA+AGG 0.561224 4_4:-70335765 Msa0699600:CDS
TCAAATGACCGAAGCTATGG+AGG 0.562058 4_4:+70335193 None:intergenic
GGGATTTGGTTGAATATATG+GGG 0.566122 4_4:+70336431 None:intergenic
CTTGAGGTAAAGAAGAGGTA+GGG 0.569099 4_4:+70337091 None:intergenic
ATCGCTGATTTGAAGAAGGA+TGG 0.571635 4_4:+70335625 None:intergenic
AATTCAAATGACCGAAGCTA+TGG 0.571830 4_4:+70335190 None:intergenic
GAAAAGGAGTTGAAGGTCAT+GGG 0.575187 4_4:+70335246 None:intergenic
ATAACTGAGGTGTTTAACAT+AGG 0.578688 4_4:-70335740 Msa0699600:CDS
TAGTTAATTCAGAGAAAGAG+AGG 0.587418 4_4:-70335034 Msa0699600:three_prime_UTR
GATGATGAAAGCATTAGGCA+TGG 0.588056 4_4:+70335553 None:intergenic
TCCCAAGATCTTAATCTCAA+GGG 0.594135 4_4:-70337039 Msa0699600:CDS
AAACACTACCTTCTCACTCA+AGG 0.602234 4_4:-70336457 Msa0699600:CDS
TAACATTGCTTGCATGTTAG+GGG 0.603992 4_4:+70334989 None:intergenic
CTCTGTTCAAGAGCTAGCAA+AGG 0.606094 4_4:-70337178 Msa0699600:CDS
GAAATGAAGATCACAAAGGG+TGG 0.608195 4_4:-70334849 Msa0699600:three_prime_UTR
TGACCGAAGCTATGGAGGGA+TGG 0.609327 4_4:+70335198 None:intergenic
CAGTTAATAGGGAATTGAGA+TGG 0.610180 4_4:-70334797 Msa0699600:three_prime_UTR
CACTCTGCCTGCAAAGAATG+GGG 0.620308 4_4:-70336997 Msa0699600:intron
TGGGGATTCCTTGAGTGAGA+AGG 0.623004 4_4:+70336449 None:intergenic
ATAGAGAACCTGAATGTTTG+GGG 0.623894 4_4:+70336410 None:intergenic
TTAGTGGAAAATATGAAGAG+AGG 0.631277 4_4:-70336617 Msa0699600:intron
CAATGACTCGTTCTGGTTGG+GGG 0.631923 4_4:+70335681 None:intergenic
CAGAAAGAAGGAGACTTGGA+GGG 0.636036 4_4:-70336545 Msa0699600:CDS
AATTTGGCAAGATCAATGAC+AGG 0.638635 4_4:+70337066 None:intergenic
AGATCAATGACAGGAACTTG+AGG 0.639698 4_4:+70337075 None:intergenic
AGGAACTTGAGGTAAAGAAG+AGG 0.643707 4_4:+70337086 None:intergenic
CAAATGACCGAAGCTATGGA+GGG 0.643988 4_4:+70335194 None:intergenic
ACTGAATATGGAAAAGAAGG+AGG 0.651740 4_4:+70334591 None:intergenic
TGATTTGAAGAAGGATGGTG+AGG 0.656227 4_4:+70335630 None:intergenic
TAGAGAACCTGAATGTTTGG+GGG 0.673586 4_4:+70336411 None:intergenic
AAATGAAATGAAGATCACAA+AGG 0.678483 4_4:-70334853 Msa0699600:three_prime_UTR
AAATCCCAAGGAAATAACTG+AGG 0.705336 4_4:-70335753 Msa0699600:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTGTAGTGTTTTTTTTTT+TGG - chr4_4:70334890-70334909 Msa0699600:three_prime_UTR 15.0%
!! AATAAAATACTACTATCATT+TGG + chr4_4:70335053-70335072 None:intergenic 15.0%
!! AATAATAAAATCATTTAAGC+TGG - chr4_4:70335160-70335179 Msa0699600:three_prime_UTR 15.0%
!!! TTTCAGTTACTTTATTTTAA+TGG + chr4_4:70336714-70336733 None:intergenic 15.0%
!! TTAAAATAAAGTAACTGAAA+TGG - chr4_4:70336714-70336733 Msa0699600:intron 15.0%
!!! TTTTACATATAAAAGTTGTA+GGG + chr4_4:70337181-70337200 None:intergenic 15.0%
!!! TTTTTACATATAAAAGTTGT+AGG + chr4_4:70337182-70337201 None:intergenic 15.0%
!!! TAAAGTTTTCACAATAATAG+CGG + chr4_4:70334559-70334578 None:intergenic 20.0%
!! TGTATGGAAAATCATATATT+GGG + chr4_4:70334999-70335018 None:intergenic 20.0%
!!! AAATTGTCATATCTTTAAGA+TGG + chr4_4:70335504-70335523 None:intergenic 20.0%
!!! AACCTACTAATTTTTTAGAT+AGG + chr4_4:70335797-70335816 None:intergenic 20.0%
!! GGATAATGATCAATAAATAA+TGG + chr4_4:70335934-70335953 None:intergenic 20.0%
! TATGGATATAAGATCTATTC+TGG - chr4_4:70334618-70334637 Msa0699600:three_prime_UTR 25.0%
! GTGTATGGAAAATCATATAT+TGG + chr4_4:70335000-70335019 None:intergenic 25.0%
! AACATTGTTTGAACTTTCAA+TGG - chr4_4:70335235-70335254 Msa0699600:three_prime_UTR 25.0%
!! ATTTTGTGAAAGTTCAAGTA+TGG - chr4_4:70335532-70335551 Msa0699600:CDS 25.0%
! ATCTTTATAGTTAGAGATCA+TGG - chr4_4:70335584-70335603 Msa0699600:CDS 25.0%
! CACCTATCTAAAAAATTAGT+AGG - chr4_4:70335792-70335811 Msa0699600:CDS 25.0%
! TCTTTATGTGTATCATGAAA+TGG + chr4_4:70335834-70335853 None:intergenic 25.0%
!! TAAATTTTGTGAAAACCACA+TGG + chr4_4:70335911-70335930 None:intergenic 25.0%
! TAATATCAGAATGAGACTTT+AGG + chr4_4:70336169-70336188 None:intergenic 25.0%
! AAGTCTCATTCTGATATTAA+TGG - chr4_4:70336170-70336189 Msa0699600:intron 25.0%
! AAATAAAAAAGGATGGACAA+TGG - chr4_4:70336234-70336253 Msa0699600:intron 25.0%
!!! ATATTGATGATGAAAGCATT+AGG + chr4_4:70336278-70336297 None:intergenic 25.0%
! AATGCTTTCATCATCAATAT+TGG - chr4_4:70336278-70336297 Msa0699600:intron 25.0%
! TATTGACAGTTAAATTGCTT+TGG - chr4_4:70336468-70336487 Msa0699600:CDS 25.0%
! ATCATTCAGATTATAACGAA+TGG - chr4_4:70336737-70336756 Msa0699600:intron 25.0%
!! CATTTAGATATGATTTTCCA+CGG + chr4_4:70336955-70336974 None:intergenic 25.0%
! AAATGAAATGAAGATCACAA+AGG - chr4_4:70336970-70336989 Msa0699600:intron 25.0%
! AATGAAATGAAGATCACAAA+GGG - chr4_4:70336971-70336990 Msa0699600:intron 25.0%
! TCTAACAAGAACAGTTAATA+GGG - chr4_4:70337015-70337034 Msa0699600:CDS 25.0%
! TGATTCAGTAAAAAAAAGAC+TGG - chr4_4:70337124-70337143 Msa0699600:CDS 25.0%
GGAAAATCATATATTGGGAA+AGG + chr4_4:70334994-70335013 None:intergenic 30.0%
! ATATGATTTTCCATACACAC+TGG - chr4_4:70335002-70335021 Msa0699600:three_prime_UTR 30.0%
TCATTTAAGCTGGTTAATCA+TGG - chr4_4:70335170-70335189 Msa0699600:three_prime_UTR 30.0%
! TCTCTTCATATTTTCCACTA+AGG + chr4_4:70335207-70335226 None:intergenic 30.0%
TTAGTGGAAAATATGAAGAG+AGG - chr4_4:70335206-70335225 Msa0699600:three_prime_UTR 30.0%
CTGTTCTTCAGATAAAATGA+AGG + chr4_4:70335315-70335334 None:intergenic 30.0%
TGAAGAACAGAAACTAGAAT+GGG - chr4_4:70335325-70335344 Msa0699600:three_prime_UTR 30.0%
ATTCTCTCTGCATTTGAATA+AGG + chr4_4:70335976-70335995 None:intergenic 30.0%
AGAGATATATTCTACAGAGT+TGG - chr4_4:70335998-70336017 Msa0699600:intron 30.0%
! ATAACTGAGGTGTTTAACAT+AGG - chr4_4:70336083-70336102 Msa0699600:intron 30.0%
AGGATAATAATTCACCCTTA+TGG + chr4_4:70336117-70336136 None:intergenic 30.0%
AGAAGGCCTTCAAATAAAAA+AGG - chr4_4:70336223-70336242 Msa0699600:intron 30.0%
!!! GTCCATCCTTTTTTATTTGA+AGG + chr4_4:70336232-70336251 None:intergenic 30.0%
TAGTTTAGTTGCTATAGTGA+TGG - chr4_4:70336671-70336690 Msa0699600:intron 30.0%
TAGTTAATTCAGAGAAAGAG+AGG - chr4_4:70336789-70336808 Msa0699600:intron 30.0%
CTCTAACAAGAACAGTTAAT+AGG - chr4_4:70337014-70337033 Msa0699600:CDS 30.0%
TCAACTGAATATGGAAAAGA+AGG + chr4_4:70337238-70337257 None:intergenic 30.0%
ATTGGAGTAGAAATTTCTTC+TGG + chr4_4:70337262-70337281 None:intergenic 30.0%
TTGTAACTTGATAGACTATG+AGG + chr4_4:70337289-70337308 None:intergenic 30.0%
!! GTTTTCACAATAATAGCGGA+AGG + chr4_4:70334555-70334574 None:intergenic 35.0%
GTATTCAGATGAACGTAGTA+TGG - chr4_4:70334600-70334619 Msa0699600:three_prime_UTR 35.0%
AATTTGGCAAGATCAATGAC+AGG + chr4_4:70334760-70334779 None:intergenic 35.0%
AAGATCTTGGGACAACAATT+TGG + chr4_4:70334776-70334795 None:intergenic 35.0%
TCCCAAGATCTTAATCTCAA+GGG - chr4_4:70334784-70334803 Msa0699600:three_prime_UTR 35.0%
TCCCTTGAGATTAAGATCTT+GGG + chr4_4:70334788-70334807 None:intergenic 35.0%
TGGAAGAAAAGAAGAAGCTA+TGG - chr4_4:70335255-70335274 Msa0699600:three_prime_UTR 35.0%
CTGAAGAACAGAAACTAGAA+TGG - chr4_4:70335324-70335343 Msa0699600:three_prime_UTR 35.0%
! GGGATTTGGTTGAATATATG+GGG + chr4_4:70335395-70335414 None:intergenic 35.0%
! GGGGATTTGGTTGAATATAT+GGG + chr4_4:70335396-70335415 None:intergenic 35.0%
ATAGAGAACCTGAATGTTTG+GGG + chr4_4:70335416-70335435 None:intergenic 35.0%
GATAGAGAACCTGAATGTTT+GGG + chr4_4:70335417-70335436 None:intergenic 35.0%
AGATAGAGAACCTGAATGTT+TGG + chr4_4:70335418-70335437 None:intergenic 35.0%
ATTCTCTCTAATCTTGCATG+AGG + chr4_4:70335684-70335703 None:intergenic 35.0%
!! TAGATAGGTGTTGAGTCATA+TGG + chr4_4:70335782-70335801 None:intergenic 35.0%
AAATTGTCTGAAAGTTGAGG+AGG + chr4_4:70335887-70335906 None:intergenic 35.0%
GGAAAATTGTCTGAAAGTTG+AGG + chr4_4:70335890-70335909 None:intergenic 35.0%
! CTTTCAGACAATTTTCCATG+TGG - chr4_4:70335893-70335912 Msa0699600:intron 35.0%
GGCTGATAATATGACTTACA+CGG + chr4_4:70335955-70335974 None:intergenic 35.0%
! CATAAGTTCGAGCATTTTGA+TGG + chr4_4:70336033-70336052 None:intergenic 35.0%
CATCAAAATGCTCGAACTTA+TGG - chr4_4:70336031-70336050 Msa0699600:intron 35.0%
AAATCCCAAGGAAATAACTG+AGG - chr4_4:70336070-70336089 Msa0699600:intron 35.0%
! AACACCTCAGTTATTTCCTT+GGG + chr4_4:70336077-70336096 None:intergenic 35.0%
! AAACACCTCAGTTATTTCCT+TGG + chr4_4:70336078-70336097 None:intergenic 35.0%
!! CTATATCGCTGATTTGAAGA+AGG + chr4_4:70336205-70336224 None:intergenic 35.0%
CTTCAAATCAGCGATATAGA+AGG - chr4_4:70336206-70336225 Msa0699600:intron 35.0%
GGCCTTCAAATAAAAAAGGA+TGG - chr4_4:70336227-70336246 Msa0699600:intron 35.0%
!! ATGATGAAAGCATTAGGCAT+GGG + chr4_4:70336272-70336291 None:intergenic 35.0%
CAATATTGGCGACATATTAG+AGG - chr4_4:70336292-70336311 Msa0699600:intron 35.0%
AATTCAAATGACCGAAGCTA+TGG + chr4_4:70336636-70336655 None:intergenic 35.0%
TAACATTGCTTGCATGTTAG+GGG + chr4_4:70336837-70336856 None:intergenic 35.0%
CTAACATTGCTTGCATGTTA+GGG + chr4_4:70336838-70336857 None:intergenic 35.0%
CTTTCTTGAGTAACAAGACT+TGG + chr4_4:70336869-70336888 None:intergenic 35.0%
CTAATTCTTCTATACTGTGC+TGG + chr4_4:70336893-70336912 None:intergenic 35.0%
AGTGTTGTAGATCACTTCAA+TGG - chr4_4:70336911-70336930 Msa0699600:intron 35.0%
CAGTTAATAGGGAATTGAGA+TGG - chr4_4:70337026-70337045 Msa0699600:CDS 35.0%
ACTGAATATGGAAAAGAAGG+AGG + chr4_4:70337235-70337254 None:intergenic 35.0%
GATAGACTATGAGGCATAAT+TGG + chr4_4:70337280-70337299 None:intergenic 35.0%
! CACAATAATAGCGGAAGGAA+TGG + chr4_4:70334550-70334569 None:intergenic 40.0%
! TTTGCTAGCTCTTGAACAGA+GGG + chr4_4:70334646-70334665 None:intergenic 40.0%
!! AACATATCGCTCTGGAACAT+TGG + chr4_4:70334680-70334699 None:intergenic 40.0%
AGTACTACAGAGTCTTGATC+TGG + chr4_4:70334706-70334725 None:intergenic 40.0%
CTTGAGGTAAAGAAGAGGTA+GGG + chr4_4:70334735-70334754 None:intergenic 40.0%
ACTTGAGGTAAAGAAGAGGT+AGG + chr4_4:70334736-70334755 None:intergenic 40.0%
AGGAACTTGAGGTAAAGAAG+AGG + chr4_4:70334740-70334759 None:intergenic 40.0%
AGATCAATGACAGGAACTTG+AGG + chr4_4:70334751-70334770 None:intergenic 40.0%
GTCCCAAGATCTTAATCTCA+AGG - chr4_4:70334783-70334802 Msa0699600:three_prime_UTR 40.0%
GTCCCTTGAGATTAAGATCT+TGG + chr4_4:70334789-70334808 None:intergenic 40.0%
AAAGAAACCCCATTCTTTGC+AGG + chr4_4:70334836-70334855 None:intergenic 40.0%
CAAAGAATGGGGTTTCTTTC+AGG - chr4_4:70334837-70334856 Msa0699600:three_prime_UTR 40.0%
CTAATCCCTCAATGTAACTG+CGG - chr4_4:70334948-70334967 Msa0699600:three_prime_UTR 40.0%
AATCTCCGCAGTTACATTGA+GGG + chr4_4:70334956-70334975 None:intergenic 40.0%
ACTGCGGAGATTCATTTATG+AGG - chr4_4:70334964-70334983 Msa0699600:three_prime_UTR 40.0%
TGGAGTAAGTACTTCCTTAG+TGG - chr4_4:70335190-70335209 Msa0699600:three_prime_UTR 40.0%
AAGAAGCTATGGCAGAAAGA+AGG - chr4_4:70335266-70335285 Msa0699600:three_prime_UTR 40.0%
AAACACTACCTTCTCACTCA+AGG - chr4_4:70335366-70335385 Msa0699600:three_prime_UTR 40.0%
! GGGGGATTTGGTTGAATATA+TGG + chr4_4:70335397-70335416 None:intergenic 40.0%
TAGAGAACCTGAATGTTTGG+GGG + chr4_4:70335415-70335434 None:intergenic 40.0%
TGCTCTTGCAATAAATCCCA+AGG - chr4_4:70336058-70336077 Msa0699600:intron 40.0%
ACATAGGAACTCAAGCCATA+AGG - chr4_4:70336099-70336118 Msa0699600:intron 40.0%
CATAGGAACTCAAGCCATAA+GGG - chr4_4:70336100-70336119 Msa0699600:intron 40.0%
TGATTTGAAGAAGGATGGTG+AGG + chr4_4:70336196-70336215 None:intergenic 40.0%
!! ATCGCTGATTTGAAGAAGGA+TGG + chr4_4:70336201-70336220 None:intergenic 40.0%
GCATTAGGCATGGGTTTAAT+AGG + chr4_4:70336263-70336282 None:intergenic 40.0%
!! GATGATGAAAGCATTAGGCA+TGG + chr4_4:70336273-70336292 None:intergenic 40.0%
CAAACACACAACGACACAAA+AGG + chr4_4:70336339-70336358 None:intergenic 40.0%
GAAAAGGAGTTGAAGGTCAT+GGG + chr4_4:70336580-70336599 None:intergenic 40.0%
GCTAACATTGCTTGCATGTT+AGG + chr4_4:70336839-70336858 None:intergenic 40.0%
GAAATGAAGATCACAAAGGG+TGG - chr4_4:70336974-70336993 Msa0699600:intron 40.0%
!! TCTTCTGGCTCAACTGAATA+TGG + chr4_4:70337247-70337266 None:intergenic 40.0%
! CTTTGCTAGCTCTTGAACAG+AGG + chr4_4:70334647-70334666 None:intergenic 45.0%
CTCTGTTCAAGAGCTAGCAA+AGG - chr4_4:70334645-70334664 Msa0699600:three_prime_UTR 45.0%
TCTGGAAGAACATATCGCTC+TGG + chr4_4:70334688-70334707 None:intergenic 45.0%
TACACTCTGCCTGCAAAGAA+TGG - chr4_4:70334824-70334843 Msa0699600:three_prime_UTR 45.0%
ACACTCTGCCTGCAAAGAAT+GGG - chr4_4:70334825-70334844 Msa0699600:three_prime_UTR 45.0%
GTAAACCATAACTTCCTCCG+CGG - chr4_4:70334912-70334931 Msa0699600:three_prime_UTR 45.0%
TAAACCATAACTTCCTCCGC+GGG - chr4_4:70334913-70334932 Msa0699600:three_prime_UTR 45.0%
GAATCTCCGCAGTTACATTG+AGG + chr4_4:70334957-70334976 None:intergenic 45.0%
TTGGTCCAGAGTTCATTCTC+TGG + chr4_4:70335034-70335053 None:intergenic 45.0%
ATGGCAGAAAGAAGGAGACT+TGG - chr4_4:70335274-70335293 Msa0699600:three_prime_UTR 45.0%
CAGAAAGAAGGAGACTTGGA+GGG - chr4_4:70335278-70335297 Msa0699600:three_prime_UTR 45.0%
ACCAAATCCCCCAAACATTC+AGG - chr4_4:70335405-70335424 Msa0699600:three_prime_UTR 45.0%
ACCTGAATGTTTGGGGGATT+TGG + chr4_4:70335409-70335428 None:intergenic 45.0%
TGCTCACACTAGTTGTGACT+TGG + chr4_4:70335749-70335768 None:intergenic 45.0%
TTTAGGCCAATGACTCGTTC+TGG + chr4_4:70336152-70336171 None:intergenic 45.0%
GGAAAAGGAGTTGAAGGTCA+TGG + chr4_4:70336581-70336600 None:intergenic 45.0%
GCTAAGGGAAAAGGAGTTGA+AGG + chr4_4:70336587-70336606 None:intergenic 45.0%
! CTGGTTTGAGCTAAGGGAAA+AGG + chr4_4:70336596-70336615 None:intergenic 45.0%
! GCTCATCTGGTTTGAGCTAA+GGG + chr4_4:70336602-70336621 None:intergenic 45.0%
! AGCTCATCTGGTTTGAGCTA+AGG + chr4_4:70336603-70336622 None:intergenic 45.0%
CAAATGACCGAAGCTATGGA+GGG + chr4_4:70336632-70336651 None:intergenic 45.0%
TCAAATGACCGAAGCTATGG+AGG + chr4_4:70336633-70336652 None:intergenic 45.0%
TTGCTCGATGCTCAATGCTT+GGG + chr4_4:70336769-70336788 None:intergenic 45.0%
ATTGCTCGATGCTCAATGCT+TGG + chr4_4:70336770-70336789 None:intergenic 45.0%
! AGGGGCATAAAAAGCAGCTA+GGG + chr4_4:70336819-70336838 None:intergenic 45.0%
! TAGGGGCATAAAAAGCAGCT+AGG + chr4_4:70336820-70336839 None:intergenic 45.0%
!! TGAGTAACAAGACTTGGTGC+TGG + chr4_4:70336863-70336882 None:intergenic 45.0%
! TACTTTTCACAAGAGCTCCG+TGG - chr4_4:70336935-70336954 Msa0699600:intron 45.0%
!!! TGATTTTATTTATTATATTT+TGG - chr4_4:70335559-70335578 Msa0699600:CDS 5.0%
!! TATAATAAAAGTTTAAATTA+TGG - chr4_4:70335650-70335669 Msa0699600:CDS 5.0%
CACTCTGCCTGCAAAGAATG+GGG - chr4_4:70334826-70334845 Msa0699600:three_prime_UTR 50.0%
AGCAGCCAGAGAATGAACTC+TGG - chr4_4:70335026-70335045 Msa0699600:three_prime_UTR 50.0%
GCAGAAAGAAGGAGACTTGG+AGG - chr4_4:70335277-70335296 Msa0699600:three_prime_UTR 50.0%
GAAGGAGACTTGGAGGGATT+TGG - chr4_4:70335284-70335303 Msa0699600:three_prime_UTR 50.0%
! AGACTTGGAGGGATTTGGTC+AGG - chr4_4:70335289-70335308 Msa0699600:three_prime_UTR 50.0%
TGGGGATTCCTTGAGTGAGA+AGG + chr4_4:70335377-70335396 None:intergenic 50.0%
! CAATGACTCGTTCTGGTTGG+GGG + chr4_4:70336145-70336164 None:intergenic 50.0%
! CCAATGACTCGTTCTGGTTG+GGG + chr4_4:70336146-70336165 None:intergenic 50.0%
! GCCAATGACTCGTTCTGGTT+GGG + chr4_4:70336147-70336166 None:intergenic 50.0%
TGTCCATCCCTCCATAGCTT+CGG - chr4_4:70336622-70336641 Msa0699600:intron 50.0%
CCCCAACCAGAACGAGTCAT+TGG - chr4_4:70336143-70336162 Msa0699600:intron 55.0%
GGCCAATGACTCGTTCTGGT+TGG + chr4_4:70336148-70336167 None:intergenic 55.0%
TGACCGAAGCTATGGAGGGA+TGG + chr4_4:70336628-70336647 None:intergenic 55.0%
GTTGCCCGCGGAGGAAGTTA+TGG + chr4_4:70334920-70334939 None:intergenic 60.0%
TTAGTCTCCGCAGTTGCCCG+CGG + chr4_4:70334932-70334951 None:intergenic 60.0%
CTGGCTGCTGCCAGTGTGTA+TGG + chr4_4:70335015-70335034 None:intergenic 60.0%
! ACTCGTTCTGGTTGGGGGCA+TGG + chr4_4:70336140-70336159 None:intergenic 60.0%
GGAGGGATGGACAGCTCATC+TGG + chr4_4:70336615-70336634 None:intergenic 60.0%
ACTTCCTCCGCGGGCAACTG+CGG - chr4_4:70334922-70334941 Msa0699600:three_prime_UTR 65.0%
! CGTTCTGGTTGGGGGCATGG+AGG + chr4_4:70336137-70336156 None:intergenic 65.0%
GTCTCCGCAGTTGCCCGCGG+AGG + chr4_4:70334929-70334948 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 70334527 70337318 70334527 ID=Msa0699600;Name=Msa0699600
chr4_4 mRNA 70334527 70337318 70334527 ID=Msa0699600-mRNA-1;Parent=Msa0699600;Name=Msa0699600-mRNA-1;_AED=0.40;_eAED=0.41;_QI=0|0.33|0.25|1|1|1|4|951|280
chr4_4 exon 70334527 70335856 70334527 ID=Msa0699600-mRNA-1:exon:21279;Parent=Msa0699600-mRNA-1
chr4_4 exon 70336419 70336635 70336419 ID=Msa0699600-mRNA-1:exon:21278;Parent=Msa0699600-mRNA-1
chr4_4 exon 70336998 70337237 70336998 ID=Msa0699600-mRNA-1:exon:21277;Parent=Msa0699600-mRNA-1
chr4_4 exon 70337312 70337318 70337312 ID=Msa0699600-mRNA-1:exon:21276;Parent=Msa0699600-mRNA-1
chr4_4 CDS 70337312 70337318 70337312 ID=Msa0699600-mRNA-1:cds;Parent=Msa0699600-mRNA-1
chr4_4 CDS 70336998 70337237 70336998 ID=Msa0699600-mRNA-1:cds;Parent=Msa0699600-mRNA-1
chr4_4 CDS 70336419 70336635 70336419 ID=Msa0699600-mRNA-1:cds;Parent=Msa0699600-mRNA-1
chr4_4 CDS 70335478 70335856 70335478 ID=Msa0699600-mRNA-1:cds;Parent=Msa0699600-mRNA-1
chr4_4 three_prime_UTR 70334527 70335477 70334527 ID=Msa0699600-mRNA-1:three_prime_utr;Parent=Msa0699600-mRNA-1
Gene Sequence

>Msa0699600

ATGATTGATGAACGTAGTATGGATATAAGATCTATTCTGGTGCCCTCTGTTCAAGAGCTAGCAAAGGAATCATTGACCAATGTTCCAGAGCGATATGTTCTTCCAGATCAAGACTCTGTAGTACTATCTAACCCTACCTCTTCTTTACCTCAAGTTCCTGTCATTGATCTTGCCAAATTGTTGTCCCAAGATCTTAATCTCAAGGGACATGAGCTAGAGAAGCTACACTCTGCCTGCAAAGAATGGGTGGAAAATATGAAGAGAGGAGCTAAAACATTGTTTGAACTTTCAATGGAAGAAAAGAAGAAGCTATGGCAGAAAGAAGGAGACTTGGAGGGATTTGGTCAGGCCTTCATTTTATCTGAAGAACAGAAACTAGAATGGGCAGATGCTTTTTTCTTGAAAACACTACCTTCTCACTCAAGGAATCCCCATATATTCAACCAAATCCCCCAAACATTCAGAGAGAATCTAGAGATATATTCTACAGAGTTGGAAAAACTCGCCATCAAAATGCTCGAACTTATGGCAAATGCTCTTGCAATAAATCCCAAGGAAATAACTGAGGTGTTTAACATAGGAACTCAAGCCATAAGGGTGAATTATTATCCTCCATGCCCCCAACCAGAACGAGTCATTGGCCTAAAGTCTCATTCTGATATTAATGGCCTCACCATCCTTCTTCAAATCAGCGATATAGAAGGCCTTCAAATAAAAAAGGATGGACAATGGATTCCTATTAAACCCATGCCTAATGCTTTCATCATCAATATTGGCGACATATTAGAGGTATGCGACAAATCATTCACAACCTTTTGTGTCGTTGTGTGTTTGATTCTATGA
Protein sequence

>Msa0699600

MIDERSMDIRSILVPSVQELAKESLTNVPERYVLPDQDSVVLSNPTSSLPQVPVIDLAKLLSQDLNLKGHELEKLHSACKEWVENMKRGAKTLFELSMEEKKKLWQKEGDLEGFGQAFILSEEQKLEWADAFFLKTLPSHSRNPHIFNQIPQTFRENLEIYSTELEKLAIKMLELMANALAINPKEITEVFNIGTQAIRVNYYPPCPQPERVIGLKSHSDINGLTILLQISDIEGLQIKKDGQWIPIKPMPNAFIINIGDILEVCDKSFTTFCVVVCLIL*