AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0937270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0937270 MtrunA17_Chr6g0453231 91.667 300 12 5 31 323 35 328 3.80e-159 448
Msa0937270 MtrunA17_Chr7g0217231 53.453 333 110 9 23 328 27 341 8.72e-89 269
Msa0937270 MtrunA17_Chr3g0133181 45.098 204 89 5 90 281 78 270 2.12e-49 166
Msa0937270 MtrunA17_Chr1g0188441 42.308 208 92 5 88 288 5 191 1.60e-47 158
Msa0937270 MtrunA17_Chr5g0412501 44.231 208 87 5 92 284 78 271 5.54e-46 157
Msa0937270 MtrunA17_Chr5g0427051 40.909 220 97 7 90 284 56 267 6.36e-46 157
Msa0937270 MtrunA17_Chr5g0404271 40.654 214 93 7 90 284 97 295 1.94e-45 156
Msa0937270 MtrunA17_Chr4g0076821 36.948 249 112 5 92 297 113 359 6.00e-42 149
Msa0937270 MtrunA17_Chr2g0315941 38.000 250 128 7 48 284 32 267 8.32e-40 140
Msa0937270 MtrunA17_Chr8g0367691 38.645 251 124 8 48 284 33 267 7.04e-39 138
Msa0937270 MtrunA17_Chr6g0479901 35.233 193 70 5 92 280 19 160 1.41e-32 119
Msa0937270 MtrunA17_Chr8g0361671 73.770 61 16 0 88 148 60 120 3.66e-26 107
Msa0937270 MtrunA17_Chr8g0357741 59.375 64 25 1 221 284 34 96 1.82e-18 79.3
Msa0937270 MtrunA17_Chr3g0092371 52.239 67 28 2 90 156 18 80 2.88e-17 75.5
Msa0937270 MtrunA17_Chr6g0453221 61.111 54 15 1 89 142 18 65 7.19e-16 71.6
Msa0937270 MtrunA17_Chr4g0060731 54.688 64 24 2 80 143 13 71 2.07e-15 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0937270 AT5G15210.1 52.632 266 82 11 21 278 6 235 2.24e-73 228
Msa0937270 AT3G28920.1 44.706 340 107 9 31 328 12 312 2.67e-67 214
Msa0937270 AT1G69600.1 51.415 212 82 4 78 281 17 215 3.16e-62 198
Msa0937270 AT2G02540.2 45.701 221 101 6 76 284 71 284 1.60e-55 183
Msa0937270 AT2G02540.1 45.701 221 101 6 76 284 71 284 1.60e-55 183
Msa0937270 AT4G24660.1 46.667 195 82 5 90 284 47 219 1.58e-50 167
Msa0937270 AT5G60480.1 46.114 193 82 3 87 278 32 203 6.08e-50 166
Msa0937270 AT4G24660.2 47.396 192 79 6 90 281 47 216 4.76e-49 164
Msa0937270 AT1G14440.1 42.929 198 107 4 89 284 87 280 1.55e-44 155
Msa0937270 AT1G14440.2 42.929 198 107 4 89 284 87 280 1.55e-44 155
Msa0937270 AT5G65410.1 43.814 194 91 4 92 283 75 252 3.67e-42 147
Msa0937270 AT1G75240.1 37.826 230 97 4 90 279 74 297 4.01e-41 145
Msa0937270 AT2G18350.1 40.000 200 92 3 92 284 82 260 8.80e-41 144
Msa0937270 AT3G50890.1 39.512 205 89 7 92 283 60 242 3.97e-36 131
Msa0937270 AT5G39760.1 63.855 83 26 1 221 303 199 277 6.24e-30 117
Msa0937270 AT1G14687.1 29.843 191 101 6 91 279 6 165 1.44e-20 87.4
Msa0937270 AT5G42780.1 30.412 194 112 6 92 281 64 238 6.32e-17 79.3
Msa0937270 AT1G74660.2 57.407 54 21 1 90 143 37 88 8.74e-17 75.1
Msa0937270 AT1G74660.1 52.239 67 28 2 90 156 37 99 1.13e-16 75.1
Msa0937270 AT1G18835.1 56.716 67 22 3 90 156 24 83 1.04e-15 72.0
Msa0937270 AT3G28917.1 55.932 59 25 1 90 148 31 88 3.89e-15 70.9

Find 83 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATCTTCAGATCATGTTAA+TGG 0.215089 6_3:-8449034 Msa0937270:CDS
GCTGCTTGTGTTACTACTAA+TGG 0.249630 6_3:-8448944 Msa0937270:CDS
TGGTGGTTGTTATGGTGGTT+TGG 0.275152 6_3:+8449691 None:intergenic
ATAGAAGTGTTCTCAAAGTT+TGG 0.303184 6_3:-8449093 Msa0937270:CDS
GGTGGTTGTTATGGTGGTTT+GGG 0.305679 6_3:+8449692 None:intergenic
ATAATATGGGTTGATGGATT+CGG 0.344754 6_3:+8449767 None:intergenic
CTGCTTGTGTTACTACTAAT+GGG 0.349200 6_3:-8448943 Msa0937270:CDS
TGTTATGGTGGTTTGGGTGG+TGG 0.354967 6_3:+8449698 None:intergenic
TGTTGTTGTGGTGGTTGTTA+TGG 0.356036 6_3:+8449683 None:intergenic
TGAGGTTGTGTTTGTGTTTG+TGG 0.361319 6_3:+8449864 None:intergenic
GCAGAAGAGAGATGAAGAAA+TGG 0.377517 6_3:-8449146 Msa0937270:CDS
GTTCACGGCGGTGGAAATTC+CGG 0.385027 6_3:+8449482 None:intergenic
GGTTGTGAGAATGAGAATAA+TGG 0.385744 6_3:-8448977 Msa0937270:CDS
TAATATGGGTTGATGGATTC+GGG 0.390176 6_3:+8449768 None:intergenic
GTGGTGGTGGTGGGTGGTGA+CGG 0.390566 6_3:+8449416 None:intergenic
CATAATAATAAGAACACTTT+GGG 0.393395 6_3:-8449067 Msa0937270:CDS
ACGGTGGAAATTGGTTCTTC+CGG 0.396797 6_3:+8449460 None:intergenic
CAACGTTGTTGTGGCTGTTA+AGG 0.403843 6_3:+8449647 None:intergenic
TGGGTTGATGGATTCGGGTC+GGG 0.404618 6_3:+8449773 None:intergenic
GTTCTTCCGGTTCACGGCGG+TGG 0.406438 6_3:+8449473 None:intergenic
TAAAGATGTAGTAGTGTTTG+TGG 0.417478 6_3:+8449837 None:intergenic
AGTAGTGTTTGTGGAGTTTG+AGG 0.419884 6_3:+8449846 None:intergenic
TGTTTGATAATATGGGTTGA+TGG 0.423302 6_3:+8449761 None:intergenic
GCCGCCGTGGACGGTGGCTC+CGG 0.424021 6_3:-8449004 Msa0937270:CDS
GCACTCTCCGGCGGCGGAGT+TGG 0.428986 6_3:-8449313 Msa0937270:CDS
GTTGTGAGAATGAGAATAAT+GGG 0.431020 6_3:-8448976 Msa0937270:CDS
GAATTTCCACCGCCGTGAAC+CGG 0.436351 6_3:-8449479 Msa0937270:CDS
CATGAATTTGCTGATAAAGT+TGG 0.436563 6_3:-8449178 Msa0937270:CDS
GTTAAACCTAAGTTCACCTA+TGG 0.442479 6_3:-8449257 Msa0937270:CDS
TTGTTCCCATAGGTGAACTT+AGG 0.444104 6_3:+8449251 None:intergenic
CTCCGCCGCCGGAGAGTGCT+AGG 0.449288 6_3:+8449317 None:intergenic
GCATAATAATAAGAACACTT+TGG 0.453675 6_3:-8449068 Msa0937270:CDS
ATAGGTGAACTTAGGTTTAA+CGG 0.456911 6_3:+8449259 None:intergenic
GATGAGATCGGTGGTGGTGA+TGG 0.466679 6_3:+8449364 None:intergenic
AAATTGGTTCTTCCGGTTCA+CGG 0.468285 6_3:+8449467 None:intergenic
TTTGTTATGTTTGATAATAT+GGG 0.469353 6_3:+8449754 None:intergenic
GTGGACGGTGGCTCCGGTGG+TGG 0.484662 6_3:-8448998 Msa0937270:CDS
TGTTGTGGTGGTTGTTATGG+TGG 0.485309 6_3:+8449686 None:intergenic
CTCCTAGCACTCTCCGGCGG+CGG 0.489973 6_3:-8449319 Msa0937270:CDS
TCGGAAGTGGCGGTTGGTGA+TGG 0.491758 6_3:+8449544 None:intergenic
GGAGGCAGGGTCATCGGAAG+TGG 0.494382 6_3:+8449531 None:intergenic
TGAATTCACAACAACCGTCT+AGG 0.501575 6_3:+8449569 None:intergenic
GGTTGTTATGGTGGTTTGGG+TGG 0.511067 6_3:+8449695 None:intergenic
GGTGGGTGGTGACGGTGATG+AGG 0.524327 6_3:+8449424 None:intergenic
ACCACCGGAGCCACCGTCCA+CGG 0.527788 6_3:+8449000 None:intergenic
CTCATTCTCACAACCACCAC+CGG 0.530426 6_3:+8448985 None:intergenic
ATGAATTTGCTGATAAAGTT+GGG 0.532314 6_3:-8449177 Msa0937270:CDS
GGCAGGGTCATCGGAAGTGG+CGG 0.542192 6_3:+8449534 None:intergenic
GAATTCACAACAACCGTCTA+GGG 0.549245 6_3:+8449570 None:intergenic
GAGAGTGCTAGGAGCATATG+TGG 0.550446 6_3:+8449328 None:intergenic
GGTGACAGCGCCGCCGTGGA+CGG 0.550962 6_3:-8449013 Msa0937270:CDS
ATGGGTTGATGGATTCGGGT+CGG 0.551586 6_3:+8449772 None:intergenic
TGTTAACAACGTTGTTGTTG+TGG 0.553047 6_3:+8449671 None:intergenic
AGAGATGAAGAAATGGTGAA+TGG 0.553318 6_3:-8449139 Msa0937270:CDS
GACAGCGCCGCCGTGGACGG+TGG 0.558001 6_3:-8449010 Msa0937270:CDS
GGGTCATCGGAAGTGGCGGT+TGG 0.558629 6_3:+8449538 None:intergenic
GGGTATGATGAGATCGGTGG+TGG 0.562285 6_3:+8449358 None:intergenic
AAAATTCACACAAGAACAGA+AGG 0.564253 6_3:-8449209 Msa0937270:CDS
GCCGTGGACGGTGGCTCCGG+TGG 0.577048 6_3:-8449001 Msa0937270:CDS
CATATGCTCCTAGCACTCTC+CGG 0.577763 6_3:-8449325 Msa0937270:CDS
GTGCCGCATGTGGTTGTCAC+CGG 0.583080 6_3:-8449501 Msa0937270:CDS
CGTCTAGGGCATGACCACCT+AGG 0.585677 6_3:+8449584 None:intergenic
GTCTAGGGCATGACCACCTA+GGG 0.587406 6_3:+8449585 None:intergenic
AGAGAGACCAACTCCGCCGC+CGG 0.587710 6_3:+8449306 None:intergenic
GGTGGTGGTGATGGAGAGCT+TGG 0.592318 6_3:+8449373 None:intergenic
GGAGCATATGTGGAGCTGAT+GGG 0.599078 6_3:+8449338 None:intergenic
GGTTGTGTTTGTGTTTGTGG+TGG 0.603786 6_3:+8449867 None:intergenic
TTAAACCTAAGTTCACCTAT+GGG 0.614933 6_3:-8449256 Msa0937270:CDS
AGGAGCATATGTGGAGCTGA+TGG 0.615206 6_3:+8449337 None:intergenic
CTAGGTGGTCATGCCCTAGA+CGG 0.615275 6_3:-8449583 Msa0937270:CDS
TAATGGTGACAGCGCCGCCG+TGG 0.615693 6_3:-8449017 Msa0937270:CDS
TAACAACGTTGTTGTTGTGG+TGG 0.626126 6_3:+8449674 None:intergenic
TCCATAAAATGTGCCGCATG+TGG 0.626127 6_3:-8449511 Msa0937270:CDS
ATTCCGGTGACAACCACATG+CGG 0.634291 6_3:+8449498 None:intergenic
AAGTAACAACAACGTTGTTG+TGG 0.645069 6_3:+8449638 None:intergenic
GCTGATGGGTATGATGAGAT+CGG 0.658606 6_3:+8449352 None:intergenic
AACCACGTGGCAACCCTAGG+TGG 0.663531 6_3:-8449598 Msa0937270:CDS
AATTTGCTGATAAAGTTGGG+TGG 0.672155 6_3:-8449174 Msa0937270:CDS
ACCGGAGCCACCGTCCACGG+CGG 0.686652 6_3:+8449003 None:intergenic
TTGGTTCTTCCGGTTCACGG+CGG 0.719247 6_3:+8449470 None:intergenic
ATGCTCCTAGCACTCTCCGG+CGG 0.721377 6_3:-8449322 Msa0937270:CDS
GACCACCTAGGGTTGCCACG+TGG 0.739077 6_3:+8449596 None:intergenic
GATGGGTATGATGAGATCGG+TGG 0.748971 6_3:+8449355 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGTTATGTTTGATAATAT+GGG + chr6_3:8449063-8449082 None:intergenic 15.0%
!!! TTTTGTTATGTTTGATAATA+TGG + chr6_3:8449064-8449083 None:intergenic 15.0%
!!! TTTGTTATGTTTGATAATAT+GGG + chr6_3:8449063-8449082 None:intergenic 15.0%
!!! TTTTGTTATGTTTGATAATA+TGG + chr6_3:8449064-8449083 None:intergenic 15.0%
!! CATAATAATAAGAACACTTT+GGG - chr6_3:8449747-8449766 Msa0937270:CDS 20.0%
!! CATAATAATAAGAACACTTT+GGG - chr6_3:8449747-8449766 Msa0937270:CDS 20.0%
!!! AAACCTTTGTCTTTTTCAAA+TGG - chr6_3:8449081-8449100 Msa0937270:CDS 25.0%
!!! ATGAGGTTGATATTCAAAAA+CGG + chr6_3:8449376-8449395 None:intergenic 25.0%
!!! ATGAATTTGCTGATAAAGTT+GGG - chr6_3:8449637-8449656 Msa0937270:CDS 25.0%
! GCATAATAATAAGAACACTT+TGG - chr6_3:8449746-8449765 Msa0937270:CDS 25.0%
!!! AAACCTTTGTCTTTTTCAAA+TGG - chr6_3:8449081-8449100 Msa0937270:CDS 25.0%
!!! ATGAGGTTGATATTCAAAAA+CGG + chr6_3:8449376-8449395 None:intergenic 25.0%
!!! ATGAATTTGCTGATAAAGTT+GGG - chr6_3:8449637-8449656 Msa0937270:CDS 25.0%
! GCATAATAATAAGAACACTT+TGG - chr6_3:8449746-8449765 Msa0937270:CDS 25.0%
TAAAGATGTAGTAGTGTTTG+TGG + chr6_3:8448980-8448999 None:intergenic 30.0%
!! ATAATATGGGTTGATGGATT+CGG + chr6_3:8449050-8449069 None:intergenic 30.0%
! TGTTTGATAATATGGGTTGA+TGG + chr6_3:8449056-8449075 None:intergenic 30.0%
ACACCATTTGAAAAAGACAA+AGG + chr6_3:8449087-8449106 None:intergenic 30.0%
TATTCAAAAACGGTGGAAAT+TGG + chr6_3:8449366-8449385 None:intergenic 30.0%
ATAGGTGAACTTAGGTTTAA+CGG + chr6_3:8449558-8449577 None:intergenic 30.0%
TTAAACCTAAGTTCACCTAT+GGG - chr6_3:8449558-8449577 Msa0937270:CDS 30.0%
AAAATTCACACAAGAACAGA+AGG - chr6_3:8449605-8449624 Msa0937270:CDS 30.0%
!! CATGAATTTGCTGATAAAGT+TGG - chr6_3:8449636-8449655 Msa0937270:CDS 30.0%
! AATGGTTTTTGCAATGAAGT+TGG - chr6_3:8449693-8449712 Msa0937270:CDS 30.0%
!! ATAGAAGTGTTCTCAAAGTT+TGG - chr6_3:8449721-8449740 Msa0937270:CDS 30.0%
TCATCTTCAGATCATGTTAA+TGG - chr6_3:8449780-8449799 Msa0937270:CDS 30.0%
GTTGTGAGAATGAGAATAAT+GGG - chr6_3:8449838-8449857 Msa0937270:CDS 30.0%
TAAAGATGTAGTAGTGTTTG+TGG + chr6_3:8448980-8448999 None:intergenic 30.0%
!! ATAATATGGGTTGATGGATT+CGG + chr6_3:8449050-8449069 None:intergenic 30.0%
! TGTTTGATAATATGGGTTGA+TGG + chr6_3:8449056-8449075 None:intergenic 30.0%
ACACCATTTGAAAAAGACAA+AGG + chr6_3:8449087-8449106 None:intergenic 30.0%
TATTCAAAAACGGTGGAAAT+TGG + chr6_3:8449366-8449385 None:intergenic 30.0%
ATAGGTGAACTTAGGTTTAA+CGG + chr6_3:8449558-8449577 None:intergenic 30.0%
TTAAACCTAAGTTCACCTAT+GGG - chr6_3:8449558-8449577 Msa0937270:CDS 30.0%
AAAATTCACACAAGAACAGA+AGG - chr6_3:8449605-8449624 Msa0937270:CDS 30.0%
!! CATGAATTTGCTGATAAAGT+TGG - chr6_3:8449636-8449655 Msa0937270:CDS 30.0%
! AATGGTTTTTGCAATGAAGT+TGG - chr6_3:8449693-8449712 Msa0937270:CDS 30.0%
!! ATAGAAGTGTTCTCAAAGTT+TGG - chr6_3:8449721-8449740 Msa0937270:CDS 30.0%
TCATCTTCAGATCATGTTAA+TGG - chr6_3:8449780-8449799 Msa0937270:CDS 30.0%
GTTGTGAGAATGAGAATAAT+GGG - chr6_3:8449838-8449857 Msa0937270:CDS 30.0%
!! TAATATGGGTTGATGGATTC+GGG + chr6_3:8449049-8449068 None:intergenic 35.0%
! TGTTAACAACGTTGTTGTTG+TGG + chr6_3:8449146-8449165 None:intergenic 35.0%
AAGTAACAACAACGTTGTTG+TGG + chr6_3:8449179-8449198 None:intergenic 35.0%
!! AGGTTGATATTCAAAAACGG+TGG + chr6_3:8449373-8449392 None:intergenic 35.0%
GTTAAACCTAAGTTCACCTA+TGG - chr6_3:8449557-8449576 Msa0937270:CDS 35.0%
! CTTTTTCTACTTGTTCCCAT+AGG + chr6_3:8449576-8449595 None:intergenic 35.0%
!! AATTTGCTGATAAAGTTGGG+TGG - chr6_3:8449640-8449659 Msa0937270:CDS 35.0%
AGAGATGAAGAAATGGTGAA+TGG - chr6_3:8449675-8449694 Msa0937270:CDS 35.0%
GGTTGTGAGAATGAGAATAA+TGG - chr6_3:8449837-8449856 Msa0937270:CDS 35.0%
! CTGCTTGTGTTACTACTAAT+GGG - chr6_3:8449871-8449890 Msa0937270:CDS 35.0%
!! TAATATGGGTTGATGGATTC+GGG + chr6_3:8449049-8449068 None:intergenic 35.0%
! TGTTAACAACGTTGTTGTTG+TGG + chr6_3:8449146-8449165 None:intergenic 35.0%
AAGTAACAACAACGTTGTTG+TGG + chr6_3:8449179-8449198 None:intergenic 35.0%
!! AGGTTGATATTCAAAAACGG+TGG + chr6_3:8449373-8449392 None:intergenic 35.0%
GTTAAACCTAAGTTCACCTA+TGG - chr6_3:8449557-8449576 Msa0937270:CDS 35.0%
! CTTTTTCTACTTGTTCCCAT+AGG + chr6_3:8449576-8449595 None:intergenic 35.0%
!! AATTTGCTGATAAAGTTGGG+TGG - chr6_3:8449640-8449659 Msa0937270:CDS 35.0%
AGAGATGAAGAAATGGTGAA+TGG - chr6_3:8449675-8449694 Msa0937270:CDS 35.0%
GGTTGTGAGAATGAGAATAA+TGG - chr6_3:8449837-8449856 Msa0937270:CDS 35.0%
! CTGCTTGTGTTACTACTAAT+GGG - chr6_3:8449871-8449890 Msa0937270:CDS 35.0%
TGAGGTTGTGTTTGTGTTTG+TGG + chr6_3:8448953-8448972 None:intergenic 40.0%
AGTAGTGTTTGTGGAGTTTG+AGG + chr6_3:8448971-8448990 None:intergenic 40.0%
TGTTGTTGTGGTGGTTGTTA+TGG + chr6_3:8449134-8449153 None:intergenic 40.0%
! TAACAACGTTGTTGTTGTGG+TGG + chr6_3:8449143-8449162 None:intergenic 40.0%
AGAATGTCTCAAAAACCACG+TGG - chr6_3:8449203-8449222 Msa0937270:CDS 40.0%
GAATTCACAACAACCGTCTA+GGG + chr6_3:8449247-8449266 None:intergenic 40.0%
TGAATTCACAACAACCGTCT+AGG + chr6_3:8449248-8449267 None:intergenic 40.0%
! AAATTGGTTCTTCCGGTTCA+CGG + chr6_3:8449350-8449369 None:intergenic 40.0%
TTGTTCCCATAGGTGAACTT+AGG + chr6_3:8449566-8449585 None:intergenic 40.0%
GCAGAAGAGAGATGAAGAAA+TGG - chr6_3:8449668-8449687 Msa0937270:CDS 40.0%
! GCTGCTTGTGTTACTACTAA+TGG - chr6_3:8449870-8449889 Msa0937270:CDS 40.0%
TGAGGTTGTGTTTGTGTTTG+TGG + chr6_3:8448953-8448972 None:intergenic 40.0%
AGTAGTGTTTGTGGAGTTTG+AGG + chr6_3:8448971-8448990 None:intergenic 40.0%
TGTTGTTGTGGTGGTTGTTA+TGG + chr6_3:8449134-8449153 None:intergenic 40.0%
! TAACAACGTTGTTGTTGTGG+TGG + chr6_3:8449143-8449162 None:intergenic 40.0%
AGAATGTCTCAAAAACCACG+TGG - chr6_3:8449203-8449222 Msa0937270:CDS 40.0%
GAATTCACAACAACCGTCTA+GGG + chr6_3:8449247-8449266 None:intergenic 40.0%
TGAATTCACAACAACCGTCT+AGG + chr6_3:8449248-8449267 None:intergenic 40.0%
! AAATTGGTTCTTCCGGTTCA+CGG + chr6_3:8449350-8449369 None:intergenic 40.0%
TTGTTCCCATAGGTGAACTT+AGG + chr6_3:8449566-8449585 None:intergenic 40.0%
GCAGAAGAGAGATGAAGAAA+TGG - chr6_3:8449668-8449687 Msa0937270:CDS 40.0%
! GCTGCTTGTGTTACTACTAA+TGG - chr6_3:8449870-8449889 Msa0937270:CDS 40.0%
GGTTGTGTTTGTGTTTGTGG+TGG + chr6_3:8448950-8448969 None:intergenic 45.0%
GGTGGTTGTTATGGTGGTTT+GGG + chr6_3:8449125-8449144 None:intergenic 45.0%
TGGTGGTTGTTATGGTGGTT+TGG + chr6_3:8449126-8449145 None:intergenic 45.0%
TGTTGTGGTGGTTGTTATGG+TGG + chr6_3:8449131-8449150 None:intergenic 45.0%
CAACGTTGTTGTGGCTGTTA+AGG + chr6_3:8449170-8449189 None:intergenic 45.0%
! TTTTATGGAGGCAGGGTCAT+CGG + chr6_3:8449292-8449311 None:intergenic 45.0%
! ACATGCGGCACATTTTATGG+AGG + chr6_3:8449304-8449323 None:intergenic 45.0%
TCCATAAAATGTGCCGCATG+TGG - chr6_3:8449303-8449322 Msa0937270:CDS 45.0%
! ACCACATGCGGCACATTTTA+TGG + chr6_3:8449307-8449326 None:intergenic 45.0%
! ACGGTGGAAATTGGTTCTTC+CGG + chr6_3:8449357-8449376 None:intergenic 45.0%
GAACGTGACTGAAAAAGTGG+TGG + chr6_3:8449420-8449439 None:intergenic 45.0%
GGTGAACGTGACTGAAAAAG+TGG + chr6_3:8449423-8449442 None:intergenic 45.0%
! GCTGATGGGTATGATGAGAT+CGG + chr6_3:8449465-8449484 None:intergenic 45.0%
GGTTGTGTTTGTGTTTGTGG+TGG + chr6_3:8448950-8448969 None:intergenic 45.0%
GGTGGTTGTTATGGTGGTTT+GGG + chr6_3:8449125-8449144 None:intergenic 45.0%
TGGTGGTTGTTATGGTGGTT+TGG + chr6_3:8449126-8449145 None:intergenic 45.0%
TGTTGTGGTGGTTGTTATGG+TGG + chr6_3:8449131-8449150 None:intergenic 45.0%
CAACGTTGTTGTGGCTGTTA+AGG + chr6_3:8449170-8449189 None:intergenic 45.0%
! TTTTATGGAGGCAGGGTCAT+CGG + chr6_3:8449292-8449311 None:intergenic 45.0%
! ACATGCGGCACATTTTATGG+AGG + chr6_3:8449304-8449323 None:intergenic 45.0%
TCCATAAAATGTGCCGCATG+TGG - chr6_3:8449303-8449322 Msa0937270:CDS 45.0%
! ACCACATGCGGCACATTTTA+TGG + chr6_3:8449307-8449326 None:intergenic 45.0%
! ACGGTGGAAATTGGTTCTTC+CGG + chr6_3:8449357-8449376 None:intergenic 45.0%
GAACGTGACTGAAAAAGTGG+TGG + chr6_3:8449420-8449439 None:intergenic 45.0%
GGTGAACGTGACTGAAAAAG+TGG + chr6_3:8449423-8449442 None:intergenic 45.0%
! GCTGATGGGTATGATGAGAT+CGG + chr6_3:8449465-8449484 None:intergenic 45.0%
! TCGGGTCGGGTTTTCTGATT+CGG + chr6_3:8449031-8449050 None:intergenic 50.0%
!! ATGGGTTGATGGATTCGGGT+CGG + chr6_3:8449045-8449064 None:intergenic 50.0%
! TGTTATGGTGGTTTGGGTGG+TGG + chr6_3:8449119-8449138 None:intergenic 50.0%
! GGTTGTTATGGTGGTTTGGG+TGG + chr6_3:8449122-8449141 None:intergenic 50.0%
AAAAACCACGTGGCAACCCT+AGG - chr6_3:8449213-8449232 Msa0937270:CDS 50.0%
! CGGCACATTTTATGGAGGCA+GGG + chr6_3:8449299-8449318 None:intergenic 50.0%
ATTCCGGTGACAACCACATG+CGG + chr6_3:8449319-8449338 None:intergenic 50.0%
!! GAAAAAGTGGTGGTGGTGGT+GGG + chr6_3:8449410-8449429 None:intergenic 50.0%
!! TGAAAAAGTGGTGGTGGTGG+TGG + chr6_3:8449411-8449430 None:intergenic 50.0%
!! GACTGAAAAAGTGGTGGTGG+TGG + chr6_3:8449414-8449433 None:intergenic 50.0%
CGTGACTGAAAAAGTGGTGG+TGG + chr6_3:8449417-8449436 None:intergenic 50.0%
GATGGGTATGATGAGATCGG+TGG + chr6_3:8449462-8449481 None:intergenic 50.0%
GGAGCATATGTGGAGCTGAT+GGG + chr6_3:8449479-8449498 None:intergenic 50.0%
! AGGAGCATATGTGGAGCTGA+TGG + chr6_3:8449480-8449499 None:intergenic 50.0%
!! GAGAGTGCTAGGAGCATATG+TGG + chr6_3:8449489-8449508 None:intergenic 50.0%
CATATGCTCCTAGCACTCTC+CGG - chr6_3:8449489-8449508 Msa0937270:CDS 50.0%
!!! GTGCAGCAGTGTTTTCAGGT+GGG + chr6_3:8449536-8449555 None:intergenic 50.0%
! AACGGTGCAGCAGTGTTTTC+AGG + chr6_3:8449540-8449559 None:intergenic 50.0%
CTCATTCTCACAACCACCAC+CGG + chr6_3:8449832-8449851 None:intergenic 50.0%
! TCGGGTCGGGTTTTCTGATT+CGG + chr6_3:8449031-8449050 None:intergenic 50.0%
!! ATGGGTTGATGGATTCGGGT+CGG + chr6_3:8449045-8449064 None:intergenic 50.0%
! TGTTATGGTGGTTTGGGTGG+TGG + chr6_3:8449119-8449138 None:intergenic 50.0%
! GGTTGTTATGGTGGTTTGGG+TGG + chr6_3:8449122-8449141 None:intergenic 50.0%
AAAAACCACGTGGCAACCCT+AGG - chr6_3:8449213-8449232 Msa0937270:CDS 50.0%
! CGGCACATTTTATGGAGGCA+GGG + chr6_3:8449299-8449318 None:intergenic 50.0%
ATTCCGGTGACAACCACATG+CGG + chr6_3:8449319-8449338 None:intergenic 50.0%
!! GAAAAAGTGGTGGTGGTGGT+GGG + chr6_3:8449410-8449429 None:intergenic 50.0%
!! TGAAAAAGTGGTGGTGGTGG+TGG + chr6_3:8449411-8449430 None:intergenic 50.0%
!! GACTGAAAAAGTGGTGGTGG+TGG + chr6_3:8449414-8449433 None:intergenic 50.0%
CGTGACTGAAAAAGTGGTGG+TGG + chr6_3:8449417-8449436 None:intergenic 50.0%
GATGGGTATGATGAGATCGG+TGG + chr6_3:8449462-8449481 None:intergenic 50.0%
GGAGCATATGTGGAGCTGAT+GGG + chr6_3:8449479-8449498 None:intergenic 50.0%
! AGGAGCATATGTGGAGCTGA+TGG + chr6_3:8449480-8449499 None:intergenic 50.0%
!! GAGAGTGCTAGGAGCATATG+TGG + chr6_3:8449489-8449508 None:intergenic 50.0%
CATATGCTCCTAGCACTCTC+CGG - chr6_3:8449489-8449508 Msa0937270:CDS 50.0%
!!! GTGCAGCAGTGTTTTCAGGT+GGG + chr6_3:8449536-8449555 None:intergenic 50.0%
! AACGGTGCAGCAGTGTTTTC+AGG + chr6_3:8449540-8449559 None:intergenic 50.0%
CTCATTCTCACAACCACCAC+CGG + chr6_3:8449832-8449851 None:intergenic 50.0%
! CGGGTCGGGTTTTCTGATTC+GGG + chr6_3:8449030-8449049 None:intergenic 55.0%
!! TGGGTTGATGGATTCGGGTC+GGG + chr6_3:8449044-8449063 None:intergenic 55.0%
! GTCTAGGGCATGACCACCTA+GGG + chr6_3:8449232-8449251 None:intergenic 55.0%
CTAGGTGGTCATGCCCTAGA+CGG - chr6_3:8449231-8449250 Msa0937270:CDS 55.0%
! GCGGCACATTTTATGGAGGC+AGG + chr6_3:8449300-8449319 None:intergenic 55.0%
GTTCACGGCGGTGGAAATTC+CGG + chr6_3:8449335-8449354 None:intergenic 55.0%
GAATTTCCACCGCCGTGAAC+CGG - chr6_3:8449335-8449354 Msa0937270:CDS 55.0%
! TTGGTTCTTCCGGTTCACGG+CGG + chr6_3:8449347-8449366 None:intergenic 55.0%
! GATGAGATCGGTGGTGGTGA+TGG + chr6_3:8449453-8449472 None:intergenic 55.0%
GGGTATGATGAGATCGGTGG+TGG + chr6_3:8449459-8449478 None:intergenic 55.0%
!! GGTGCAGCAGTGTTTTCAGG+TGG + chr6_3:8449537-8449556 None:intergenic 55.0%
! CGGGTCGGGTTTTCTGATTC+GGG + chr6_3:8449030-8449049 None:intergenic 55.0%
!! TGGGTTGATGGATTCGGGTC+GGG + chr6_3:8449044-8449063 None:intergenic 55.0%
! GTCTAGGGCATGACCACCTA+GGG + chr6_3:8449232-8449251 None:intergenic 55.0%
CTAGGTGGTCATGCCCTAGA+CGG - chr6_3:8449231-8449250 Msa0937270:CDS 55.0%
! GCGGCACATTTTATGGAGGC+AGG + chr6_3:8449300-8449319 None:intergenic 55.0%
GTTCACGGCGGTGGAAATTC+CGG + chr6_3:8449335-8449354 None:intergenic 55.0%
GAATTTCCACCGCCGTGAAC+CGG - chr6_3:8449335-8449354 Msa0937270:CDS 55.0%
! TTGGTTCTTCCGGTTCACGG+CGG + chr6_3:8449347-8449366 None:intergenic 55.0%
! GATGAGATCGGTGGTGGTGA+TGG + chr6_3:8449453-8449472 None:intergenic 55.0%
GGGTATGATGAGATCGGTGG+TGG + chr6_3:8449459-8449478 None:intergenic 55.0%
!! GGTGCAGCAGTGTTTTCAGG+TGG + chr6_3:8449537-8449556 None:intergenic 55.0%
AACCACGTGGCAACCCTAGG+TGG - chr6_3:8449216-8449235 Msa0937270:CDS 60.0%
! CGTCTAGGGCATGACCACCT+AGG + chr6_3:8449233-8449252 None:intergenic 60.0%
!! TCGGAAGTGGCGGTTGGTGA+TGG + chr6_3:8449273-8449292 None:intergenic 60.0%
GTGCCGCATGTGGTTGTCAC+CGG - chr6_3:8449313-8449332 Msa0937270:CDS 60.0%
!! AAAGTGGTGGTGGTGGTGGG+TGG + chr6_3:8449407-8449426 None:intergenic 60.0%
!! GGTGGTGGTGATGGAGAGCT+TGG + chr6_3:8449444-8449463 None:intergenic 60.0%
ATGCTCCTAGCACTCTCCGG+CGG - chr6_3:8449492-8449511 Msa0937270:CDS 60.0%
AACCACGTGGCAACCCTAGG+TGG - chr6_3:8449216-8449235 Msa0937270:CDS 60.0%
! CGTCTAGGGCATGACCACCT+AGG + chr6_3:8449233-8449252 None:intergenic 60.0%
!! TCGGAAGTGGCGGTTGGTGA+TGG + chr6_3:8449273-8449292 None:intergenic 60.0%
GTGCCGCATGTGGTTGTCAC+CGG - chr6_3:8449313-8449332 Msa0937270:CDS 60.0%
!! AAAGTGGTGGTGGTGGTGGG+TGG + chr6_3:8449407-8449426 None:intergenic 60.0%
!! GGTGGTGGTGATGGAGAGCT+TGG + chr6_3:8449444-8449463 None:intergenic 60.0%
ATGCTCCTAGCACTCTCCGG+CGG - chr6_3:8449492-8449511 Msa0937270:CDS 60.0%
GACCACCTAGGGTTGCCACG+TGG + chr6_3:8449221-8449240 None:intergenic 65.0%
GGGTCATCGGAAGTGGCGGT+TGG + chr6_3:8449279-8449298 None:intergenic 65.0%
GGCAGGGTCATCGGAAGTGG+CGG + chr6_3:8449283-8449302 None:intergenic 65.0%
GGAGGCAGGGTCATCGGAAG+TGG + chr6_3:8449286-8449305 None:intergenic 65.0%
GTTCTTCCGGTTCACGGCGG+TGG + chr6_3:8449344-8449363 None:intergenic 65.0%
!! GGTGGGTGGTGACGGTGATG+AGG + chr6_3:8449393-8449412 None:intergenic 65.0%
!! GTGGTGGTGGTGGGTGGTGA+CGG + chr6_3:8449401-8449420 None:intergenic 65.0%
AGAGAGACCAACTCCGCCGC+CGG + chr6_3:8449511-8449530 None:intergenic 65.0%
TAATGGTGACAGCGCCGCCG+TGG - chr6_3:8449797-8449816 Msa0937270:CDS 65.0%
GACCACCTAGGGTTGCCACG+TGG + chr6_3:8449221-8449240 None:intergenic 65.0%
GGGTCATCGGAAGTGGCGGT+TGG + chr6_3:8449279-8449298 None:intergenic 65.0%
GGCAGGGTCATCGGAAGTGG+CGG + chr6_3:8449283-8449302 None:intergenic 65.0%
GGAGGCAGGGTCATCGGAAG+TGG + chr6_3:8449286-8449305 None:intergenic 65.0%
GTTCTTCCGGTTCACGGCGG+TGG + chr6_3:8449344-8449363 None:intergenic 65.0%
!! GGTGGGTGGTGACGGTGATG+AGG + chr6_3:8449393-8449412 None:intergenic 65.0%
!! GTGGTGGTGGTGGGTGGTGA+CGG + chr6_3:8449401-8449420 None:intergenic 65.0%
AGAGAGACCAACTCCGCCGC+CGG + chr6_3:8449511-8449530 None:intergenic 65.0%
TAATGGTGACAGCGCCGCCG+TGG - chr6_3:8449797-8449816 Msa0937270:CDS 65.0%
CTCCTAGCACTCTCCGGCGG+CGG - chr6_3:8449495-8449514 Msa0937270:CDS 70.0%
ACCACCGGAGCCACCGTCCA+CGG + chr6_3:8449817-8449836 None:intergenic 70.0%
CTCCTAGCACTCTCCGGCGG+CGG - chr6_3:8449495-8449514 Msa0937270:CDS 70.0%
ACCACCGGAGCCACCGTCCA+CGG + chr6_3:8449817-8449836 None:intergenic 70.0%
!! CTCCGCCGCCGGAGAGTGCT+AGG + chr6_3:8449500-8449519 None:intergenic 75.0%
GCACTCTCCGGCGGCGGAGT+TGG - chr6_3:8449501-8449520 Msa0937270:CDS 75.0%
GGTGACAGCGCCGCCGTGGA+CGG - chr6_3:8449801-8449820 Msa0937270:CDS 75.0%
ACCGGAGCCACCGTCCACGG+CGG + chr6_3:8449814-8449833 None:intergenic 75.0%
GTGGACGGTGGCTCCGGTGG+TGG - chr6_3:8449816-8449835 Msa0937270:CDS 75.0%
!! CTCCGCCGCCGGAGAGTGCT+AGG + chr6_3:8449500-8449519 None:intergenic 75.0%
GCACTCTCCGGCGGCGGAGT+TGG - chr6_3:8449501-8449520 Msa0937270:CDS 75.0%
GGTGACAGCGCCGCCGTGGA+CGG - chr6_3:8449801-8449820 Msa0937270:CDS 75.0%
ACCGGAGCCACCGTCCACGG+CGG + chr6_3:8449814-8449833 None:intergenic 75.0%
GTGGACGGTGGCTCCGGTGG+TGG - chr6_3:8449816-8449835 Msa0937270:CDS 75.0%
! GACAGCGCCGCCGTGGACGG+TGG - chr6_3:8449804-8449823 Msa0937270:CDS 80.0%
! GCCGCCGTGGACGGTGGCTC+CGG - chr6_3:8449810-8449829 Msa0937270:CDS 80.0%
! GCCGTGGACGGTGGCTCCGG+TGG - chr6_3:8449813-8449832 Msa0937270:CDS 80.0%
! GACAGCGCCGCCGTGGACGG+TGG - chr6_3:8449804-8449823 Msa0937270:CDS 80.0%
! GCCGCCGTGGACGGTGGCTC+CGG - chr6_3:8449810-8449829 Msa0937270:CDS 80.0%
! GCCGTGGACGGTGGCTCCGG+TGG - chr6_3:8449813-8449832 Msa0937270:CDS 80.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 8448925 8449911 8448925 ID=Msa0937270;Name=Msa0937270
chr6_3 mRNA 8448925 8449911 8448925 ID=Msa0937270-mRNA-1;Parent=Msa0937270;Name=Msa0937270-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|-1|0|1|-1|1|1|0|328
chr6_3 exon 8448925 8449911 8448925 ID=Msa0937270-mRNA-1:exon:2746;Parent=Msa0937270-mRNA-1
chr6_3 CDS 8448925 8449911 8448925 ID=Msa0937270-mRNA-1:cds;Parent=Msa0937270-mRNA-1
Gene Sequence

>Msa0937270

ATGGAAGTTATAACAAAAACAACCACCACAAACACAAACACAACCTCAAACTCCACAAACACTACTACATCTTTAACGACAAATCTAACAAAAGAACAACAACCCGAATCAGAAAACCCGACCCGAATCCATCAACCCATATTATCAAACATAACAAAACCTTTGTCTTTTTCAAATGGTGTTCTCAAACGCCACCACCCAAACCACCATAACAACCACCACAACAACAACGTTGTTAACAACCTTAACAGCCACAACAACGTTGTTGTTACTTACAAAGAATGTCTCAAAAACCACGTGGCAACCCTAGGTGGTCATGCCCTAGACGGTTGTTGTGAATTCATGCCATCACCAACCGCCACTTCCGATGACCCTGCCTCCATAAAATGTGCCGCATGTGGTTGTCACCGGAATTTCCACCGCCGTGAACCGGAAGAACCAATTTCCACCGTTTTTGAATATCAACCTCATCACCGTCACCACCCACCACCACCACCACTTTTTCAGTCACGTTCACCAAGCTCTCCATCACCACCACCGATCTCATCATACCCATCAGCTCCACATATGCTCCTAGCACTCTCCGGCGGCGGAGTTGGTCTCTCTATCCCACCTGAAAACACTGCTGCACCGTTAAACCTAAGTTCACCTATGGGAACAAGTAGAAAAAGATTCAGAACAAAATTCACACAAGAACAGAAGGAAAAGATGCATGAATTTGCTGATAAAGTTGGGTGGAAGATGCAGAAGAGAGATGAAGAAATGGTGAATGGTTTTTGCAATGAAGTTGGTGTTGATAGAAGTGTTCTCAAAGTTTGGATGCATAATAATAAGAACACTTTGGGAAGAAAATTATCATCTTCAGATCATGTTAATGGTGACAGCGCCGCCGTGGACGGTGGCTCCGGTGGTGGTTGTGAGAATGAGAATAATGGGAGTAATGTTGCTGCTTGTGTTACTACTAATGGGTCTTCTTCTTCTTCTTGA

Protein sequence

>Msa0937270

MEVITKTTTTNTNTTSNSTNTTTSLTTNLTKEQQPESENPTRIHQPILSNITKPLSFSNGVLKRHHPNHHNNHHNNNVVNNLNSHNNVVVTYKECLKNHVATLGGHALDGCCEFMPSPTATSDDPASIKCAACGCHRNFHRREPEEPISTVFEYQPHHRHHPPPPPLFQSRSPSSPSPPPISSYPSAPHMLLALSGGGVGLSIPPENTAAPLNLSSPMGTSRKRFRTKFTQEQKEKMHEFADKVGWKMQKRDEEMVNGFCNEVGVDRSVLKVWMHNNKNTLGRKLSSSDHVNGDSAAVDGGSGGGCENENNGSNVAACVTTNGSSSSS*