AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0562390

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0562390 MtrunA17_Chr8g0375571 74.438 356 55 3 195 515 1 355 0.0 541
Msa0562390 MtrunA17_Chr8g0375571 44.330 194 68 3 1 157 1 191 2.52e-39 146
Msa0562390 MtrunA17_Chr8g0375571 56.522 69 30 0 119 187 271 339 1.36e-16 81.3
Msa0562390 MtrunA17_Chr8g0375671 55.908 347 117 3 199 510 12 357 1.87e-134 394
Msa0562390 MtrunA17_Chr8g0375671 49.133 173 48 3 8 143 15 184 9.87e-43 155
Msa0562390 MtrunA17_Chr8g0375671 56.522 69 30 0 119 187 278 346 8.15e-17 82.0
Msa0562390 MtrunA17_Chr8g0375601 55.524 353 119 5 195 510 1 352 2.13e-128 379
Msa0562390 MtrunA17_Chr8g0375601 73.620 163 7 1 1 127 1 163 6.76e-74 238
Msa0562390 MtrunA17_Chr8g0375601 96.610 59 2 0 129 187 283 341 3.40e-29 118
Msa0562390 MtrunA17_Chr8g0365241 54.467 347 119 4 199 510 17 359 1.09e-123 366
Msa0562390 MtrunA17_Chr8g0365241 37.912 182 70 4 8 151 20 196 2.02e-27 113
Msa0562390 MtrunA17_Chr8g0365241 60.000 70 25 1 129 195 290 359 2.90e-18 86.7
Msa0562390 MtrunA17_Chr5g0420981 53.868 349 123 3 199 512 12 357 2.98e-123 365
Msa0562390 MtrunA17_Chr5g0420981 42.405 158 51 3 8 129 15 168 5.38e-28 114
Msa0562390 MtrunA17_Chr5g0420981 57.143 70 27 1 129 195 286 355 1.33e-17 84.3
Msa0562390 MtrunA17_Chr5g0421011 52.991 351 125 4 199 514 7 352 2.71e-122 362
Msa0562390 MtrunA17_Chr5g0421011 34.466 206 91 5 8 175 10 209 3.62e-23 100
Msa0562390 MtrunA17_Chr5g0421011 66.102 59 20 0 129 187 279 337 3.98e-17 82.8
Msa0562390 MtrunA17_Chr5g0423251 53.295 349 123 5 199 512 7 350 1.29e-121 360
Msa0562390 MtrunA17_Chr5g0423251 38.728 173 64 3 8 144 10 176 5.71e-26 108
Msa0562390 MtrunA17_Chr5g0423251 47.458 59 31 0 129 187 279 337 4.86e-12 67.4
Msa0562390 MtrunA17_Chr5g0421091 51.705 352 129 5 195 510 1 347 2.98e-121 360
Msa0562390 MtrunA17_Chr5g0421091 36.306 157 58 3 9 129 9 159 2.46e-22 98.6
Msa0562390 MtrunA17_Chr5g0421091 59.322 59 24 0 129 187 278 336 4.85e-14 73.6
Msa0562390 MtrunA17_Chr5g0423201 51.695 354 130 5 195 512 3 351 2.04e-120 357
Msa0562390 MtrunA17_Chr5g0423201 37.725 167 61 4 1 130 3 163 1.56e-24 104
Msa0562390 MtrunA17_Chr2g0314401 51.009 347 132 4 199 510 11 354 3.46e-120 357
Msa0562390 MtrunA17_Chr2g0314401 39.306 173 65 4 8 144 14 182 9.74e-28 114
Msa0562390 MtrunA17_Chr5g0420951 51.282 351 133 3 199 514 12 359 3.88e-120 357
Msa0562390 MtrunA17_Chr5g0420951 36.559 186 76 4 4 151 11 192 5.73e-27 112
Msa0562390 MtrunA17_Chr5g0420951 57.627 59 25 0 129 187 286 344 9.79e-15 75.9
Msa0562390 MtrunA17_Chr5g0421041 51.009 347 128 4 199 510 7 346 2.83e-119 354
Msa0562390 MtrunA17_Chr5g0421041 39.306 173 61 4 8 144 10 174 1.49e-25 107
Msa0562390 MtrunA17_Chr5g0421041 49.153 59 30 0 129 187 277 335 1.71e-11 65.9
Msa0562390 MtrunA17_Chr5g0420901 50.284 352 134 5 195 510 1 347 4.01e-119 354
Msa0562390 MtrunA17_Chr5g0420901 37.209 172 66 4 9 144 10 175 8.21e-25 105
Msa0562390 MtrunA17_Chr5g0420901 50.847 59 29 0 129 187 278 336 1.56e-13 72.0
Msa0562390 MtrunA17_Chr5g0423221 50.852 352 132 5 195 510 27 373 1.16e-118 354
Msa0562390 MtrunA17_Chr5g0423221 36.111 180 73 4 1 144 27 200 6.61e-25 106
Msa0562390 MtrunA17_Chr5g0423221 49.153 59 30 0 129 187 304 362 7.94e-12 67.0
Msa0562390 MtrunA17_Chr5g0421101 50.712 351 133 5 195 510 3 348 2.25e-118 352
Msa0562390 MtrunA17_Chr5g0421101 37.778 180 70 4 1 144 3 176 7.42e-28 114
Msa0562390 MtrunA17_Chr5g0421101 49.153 59 30 0 129 187 279 337 8.12e-12 66.6
Msa0562390 MtrunA17_Chr5g0423191 52.738 347 124 4 199 510 7 348 2.59e-118 352
Msa0562390 MtrunA17_Chr5g0423191 37.572 173 66 4 8 144 10 176 1.08e-23 102
Msa0562390 MtrunA17_Chr5g0423191 49.153 59 30 0 129 187 279 337 8.43e-14 72.8
Msa0562390 MtrunA17_Chr2g0314391 49.856 347 136 4 199 510 30 373 4.96e-117 350
Msa0562390 MtrunA17_Chr2g0314391 41.139 158 53 4 8 129 33 186 1.10e-26 111
Msa0562390 MtrunA17_Chr2g0314391 55.932 59 26 0 129 187 304 362 8.71e-13 70.1
Msa0562390 MtrunA17_Chr5g0420941 50.142 353 136 4 195 512 1 348 1.59e-116 347
Msa0562390 MtrunA17_Chr5g0420941 36.464 181 71 6 9 151 9 183 1.06e-23 102
Msa0562390 MtrunA17_Chr5g0420941 50.847 59 29 0 129 187 277 335 3.40e-12 67.8
Msa0562390 MtrunA17_Chr2g0314381 44.416 385 166 8 168 510 2 380 5.07e-115 345
Msa0562390 MtrunA17_Chr2g0314381 42.138 159 51 5 8 129 39 193 1.70e-25 108
Msa0562390 MtrunA17_Chr1g0162191 50.145 345 130 5 199 508 11 348 3.20e-110 332
Msa0562390 MtrunA17_Chr1g0162191 42.568 148 46 3 19 130 20 164 2.21e-26 110
Msa0562390 MtrunA17_Chr1g0162191 52.542 59 28 0 128 186 280 338 8.32e-12 66.6
Msa0562390 MtrunA17_Chr5g0423211 49.570 349 132 6 200 510 8 350 1.21e-109 330
Msa0562390 MtrunA17_Chr5g0423211 37.419 155 55 4 9 127 11 159 4.87e-20 91.7
Msa0562390 MtrunA17_Chr5g0423211 59.322 59 23 1 129 187 282 339 6.67e-14 73.2
Msa0562390 MtrunA17_Chr8g0375681 52.985 268 100 1 271 512 20 287 1.65e-98 299
Msa0562390 MtrunA17_Chr8g0375681 62.319 69 26 0 75 143 44 112 1.78e-21 94.7
Msa0562390 MtrunA17_Chr8g0375681 66.102 59 20 0 129 187 216 274 1.52e-16 80.5
Msa0562390 MtrunA17_Chr5g0420721 54.065 246 87 1 291 510 5 250 1.29e-90 278
Msa0562390 MtrunA17_Chr5g0420721 50.000 70 35 0 75 144 9 78 8.90e-15 74.3
Msa0562390 MtrunA17_Chr5g0420721 49.153 59 30 0 129 187 181 239 3.11e-12 67.0
Msa0562390 MtrunA17_Chr8g0375701 38.123 341 171 4 205 510 20 355 6.41e-80 253
Msa0562390 MtrunA17_Chr2g0314371 42.138 318 121 7 199 458 11 323 2.22e-77 246
Msa0562390 MtrunA17_Chr2g0314371 42.073 164 54 5 8 134 14 173 3.07e-26 109
Msa0562390 MtrunA17_Chr3g0087031 38.329 347 175 6 199 510 18 360 2.54e-75 241
Msa0562390 MtrunA17_Chr3g0087031 37.017 181 76 4 8 152 21 199 2.82e-21 95.5
Msa0562390 MtrunA17_Chr8g0375591 87.786 131 7 1 195 316 1 131 6.22e-73 227
Msa0562390 MtrunA17_Chr8g0375591 43.284 134 35 4 1 96 1 131 2.93e-20 87.0
Msa0562390 MtrunA17_Chr2g0296371 35.362 345 185 4 202 510 14 356 4.64e-68 223
Msa0562390 MtrunA17_Chr7g0239101 32.402 358 203 4 188 510 3 356 1.18e-64 214
Msa0562390 MtrunA17_Chr7g0239101 35.795 176 60 6 7 140 16 180 1.30e-15 78.6
Msa0562390 MtrunA17_Chr7g0239821 33.238 349 192 6 202 514 26 369 8.57e-64 212
Msa0562390 MtrunA17_Chr7g0239111 31.988 347 197 4 199 510 14 356 3.07e-62 207
Msa0562390 MtrunA17_Chr7g0239121 31.609 348 198 5 199 510 10 353 9.80e-62 206
Msa0562390 MtrunA17_Chr7g0239121 32.967 182 66 6 4 140 6 176 1.46e-13 72.0
Msa0562390 MtrunA17_Chr3g0145171 35.362 345 180 7 196 500 6 347 9.85e-62 206
Msa0562390 MtrunA17_Chr5g0420881 59.028 144 59 0 367 510 1 144 1.93e-60 196
Msa0562390 MtrunA17_Chr5g0420881 55.932 59 26 0 129 187 75 133 9.39e-17 77.4
Msa0562390 MtrunA17_Chr7g0242551 35.692 325 165 5 205 486 15 338 3.49e-60 202
Msa0562390 MtrunA17_Chr8g0375641 56.977 172 63 3 199 360 12 182 4.17e-59 193
Msa0562390 MtrunA17_Chr8g0375641 47.283 184 45 4 8 154 15 183 2.22e-43 152
Msa0562390 MtrunA17_Chr4g0006371 34.639 332 166 5 202 482 11 342 1.13e-58 198
Msa0562390 MtrunA17_Chr8g0375661 59.119 159 55 2 199 348 12 169 2.74e-57 188
Msa0562390 MtrunA17_Chr8g0375661 54.140 157 32 3 8 127 15 168 1.33e-45 157
Msa0562390 MtrunA17_Chr8g0370721 34.444 360 188 9 192 510 2 354 6.94e-56 191
Msa0562390 MtrunA17_Chr8g0370711 34.393 346 183 8 204 510 14 354 1.43e-55 190
Msa0562390 MtrunA17_Chr3g0113641 31.014 345 201 3 205 512 15 359 2.12e-55 189
Msa0562390 MtrunA17_Chr5g0437181 33.968 315 171 3 205 482 14 328 3.23e-55 189
Msa0562390 MtrunA17_Chr7g0239071 33.206 262 149 4 275 510 40 301 8.19e-52 179
Msa0562390 MtrunA17_Chr5g0426891 32.849 344 190 10 204 510 3 342 1.51e-51 179
Msa0562390 MtrunA17_Chr5g0398291 32.198 323 173 8 205 482 8 329 1.45e-50 176
Msa0562390 MtrunA17_Chr7g0232161 35.439 285 137 9 199 444 19 295 1.95e-49 172
Msa0562390 MtrunA17_Chr3g0145181 33.333 321 174 7 204 485 12 331 4.52e-49 172
Msa0562390 MtrunA17_Chr4g0064781 32.803 314 167 7 234 511 44 349 7.30e-49 172
Msa0562390 MtrunA17_Chr3g0128001 32.326 331 182 9 214 509 13 336 1.10e-47 168
Msa0562390 MtrunA17_Chr8g0345831 29.885 348 202 7 199 510 2 343 1.92e-47 168
Msa0562390 MtrunA17_Chr3g0109041 30.372 349 190 9 205 508 10 350 2.13e-47 168
Msa0562390 MtrunA17_Chr7g0239091 30.058 346 191 9 203 512 123 453 2.22e-46 168
Msa0562390 MtrunA17_Chr5g0420891 50.633 158 64 3 200 348 7 159 2.06e-45 157
Msa0562390 MtrunA17_Chr5g0420891 38.065 155 54 3 9 127 10 158 6.02e-24 98.6
Msa0562390 MtrunA17_Chr1g0179801 28.689 366 202 12 196 511 18 374 4.99e-43 157
Msa0562390 MtrunA17_Chr3g0145201 33.333 285 151 7 239 485 683 966 1.27e-42 162
Msa0562390 MtrunA17_Chr8g0375581 93.056 72 5 0 357 428 15 86 2.32e-42 145
Msa0562390 MtrunA17_Chr1g0162361 33.882 304 136 13 237 487 24 315 2.68e-41 151
Msa0562390 MtrunA17_Chr2g0289341 29.739 306 164 8 237 502 1 295 4.48e-41 150
Msa0562390 MtrunA17_Chr8g0336781 29.393 313 172 8 240 510 95 400 3.54e-40 149
Msa0562390 MtrunA17_Chr7g0265221 27.676 383 203 13 191 510 9 380 3.84e-40 149
Msa0562390 MtrunA17_Chr8g0348081 27.548 363 216 9 183 510 14 364 6.76e-40 148
Msa0562390 MtrunA17_Chr8g0336761 28.883 367 192 14 190 510 21 364 7.33e-40 148
Msa0562390 MtrunA17_Chr8g0336851 27.493 371 206 11 183 510 14 364 7.79e-40 148
Msa0562390 MtrunA17_Chr2g0311761 27.701 361 217 8 185 510 21 372 1.26e-39 147
Msa0562390 MtrunA17_Chr4g0050031 30.488 328 184 9 218 510 48 366 1.57e-39 147
Msa0562390 MtrunA17_Chr5g0412651 29.429 333 190 10 207 498 5 333 1.29e-38 144
Msa0562390 MtrunA17_Chr8g0336861 27.642 369 196 13 190 510 21 366 1.74e-38 144
Msa0562390 MtrunA17_Chr1g0161041 29.121 364 194 14 189 509 52 394 1.91e-38 145
Msa0562390 MtrunA17_Chr3g0121141 29.085 306 164 9 237 502 1 293 4.15e-38 142
Msa0562390 MtrunA17_Chr3g0126741 30.000 330 184 9 202 491 20 342 4.40e-38 143
Msa0562390 MtrunA17_Chr3g0114861 28.750 320 180 9 202 482 3 313 4.76e-38 142
Msa0562390 MtrunA17_Chr5g0424201 27.660 329 192 7 202 491 6 327 8.13e-38 141
Msa0562390 MtrunA17_Chr8g0351101 29.299 314 171 6 213 482 30 336 2.09e-37 141
Msa0562390 MtrunA17_Chr1g0162321 31.229 301 145 9 240 483 69 364 2.73e-37 141
Msa0562390 MtrunA17_Chr1g0162351 30.897 301 146 9 240 483 69 364 2.78e-37 141
Msa0562390 MtrunA17_Chr3g0093741 29.499 339 206 8 204 510 17 354 3.05e-37 140
Msa0562390 MtrunA17_Chr1g0187831 27.321 377 209 15 186 513 19 379 3.22e-37 141
Msa0562390 MtrunA17_Chr3g0093761 29.290 338 207 7 204 510 17 353 3.62e-37 140
Msa0562390 MtrunA17_Chr2g0311831 27.273 363 215 10 185 510 21 371 5.83e-37 140
Msa0562390 MtrunA17_Chr4g0045411 31.741 293 153 7 240 486 30 321 7.16e-37 139
Msa0562390 MtrunA17_Chr5g0412681 29.866 298 158 8 240 497 33 319 2.54e-36 137
Msa0562390 MtrunA17_Chr5g0412671 30.031 323 171 13 207 483 5 318 3.68e-36 137
Msa0562390 MtrunA17_Chr1g0187821 26.703 367 213 11 186 510 18 370 4.59e-36 137
Msa0562390 MtrunA17_Chr3g0125201 27.703 296 175 5 240 499 3 295 5.72e-36 135
Msa0562390 MtrunA17_Chr1g0161111 28.607 402 217 16 149 506 52 427 1.23e-35 137
Msa0562390 MtrunA17_Chr8g0336631 27.397 365 201 10 190 510 21 365 1.57e-35 136
Msa0562390 MtrunA17_Chr4g0045471 30.743 296 152 9 240 483 26 320 4.69e-35 134
Msa0562390 MtrunA17_Chr4g0045441 33.003 303 135 13 240 483 26 319 5.79e-35 134
Msa0562390 MtrunA17_Chr3g0093751 28.909 339 208 8 204 510 17 354 6.40e-35 134
Msa0562390 MtrunA17_Chr5g0424211 28.750 320 179 8 202 479 3 315 9.98e-35 133
Msa0562390 MtrunA17_Chr8g0336751 28.649 370 203 13 184 510 46 397 1.16e-34 134
Msa0562390 MtrunA17_Chr1g0161081 28.926 363 190 15 189 506 29 368 1.82e-34 133
Msa0562390 MtrunA17_Chr4g0075471 46.610 118 60 1 359 476 24 138 3.36e-34 126
Msa0562390 MtrunA17_Chr5g0439011 27.451 306 165 7 241 502 6 298 3.97e-34 131
Msa0562390 MtrunA17_Chr4g0066121 26.769 325 194 9 204 490 27 345 5.20e-34 132
Msa0562390 MtrunA17_Chr7g0250511 25.356 351 206 10 204 510 13 351 2.76e-33 129
Msa0562390 MtrunA17_Chr2g0311921 23.014 365 229 8 185 510 7 358 6.08e-33 129
Msa0562390 MtrunA17_Chr7g0225881 25.956 366 224 9 185 512 16 372 7.55e-33 129
Msa0562390 MtrunA17_Chr6g0474391 27.796 313 174 7 215 482 42 347 1.01e-32 129
Msa0562390 MtrunA17_Chr2g0332191 28.613 346 175 12 211 503 23 349 1.02e-32 128
Msa0562390 MtrunA17_Chr1g0184161 29.377 337 184 12 212 504 11 337 1.67e-32 127
Msa0562390 MtrunA17_Chr1g0204181 27.885 312 177 6 214 482 36 342 3.52e-32 127
Msa0562390 MtrunA17_Chr7g0266651 25.208 361 217 12 189 510 16 362 4.35e-32 126
Msa0562390 MtrunA17_Chr8g0354261 26.513 347 211 10 204 510 32 374 5.21e-32 126
Msa0562390 MtrunA17_Chr7g0265351 28.662 314 180 9 233 510 32 337 5.90e-32 125
Msa0562390 MtrunA17_Chr4g0045431 28.808 302 149 8 240 483 26 319 7.26e-32 125
Msa0562390 MtrunA17_Chr1g0184101 29.703 303 162 11 212 473 10 302 1.42e-31 124
Msa0562390 MtrunA17_Chr2g0311861 26.741 359 202 11 185 510 17 347 1.90e-31 124
Msa0562390 MtrunA17_Chr4g0045451 28.664 307 143 10 240 483 26 319 2.75e-31 124
Msa0562390 MtrunA17_Chr2g0311741 25.321 312 197 9 232 510 19 327 2.91e-31 123
Msa0562390 MtrunA17_Chr6g0488511 30.657 274 142 9 240 474 3 267 3.04e-31 122
Msa0562390 MtrunA17_Chr1g0184151 27.554 323 182 9 216 497 15 326 3.48e-31 123
Msa0562390 MtrunA17_Chr3g0126761 42.748 131 73 2 361 491 85 213 3.57e-31 120
Msa0562390 MtrunA17_Chr1g0170631 40.260 154 87 3 361 511 42 193 5.93e-31 119
Msa0562390 MtrunA17_Chr1g0184111 27.576 330 188 12 210 498 8 327 7.88e-31 122
Msa0562390 MtrunA17_Chr1g0167911 26.479 355 214 10 184 503 7 349 8.45e-31 122
Msa0562390 MtrunA17_Chr6g0472861 25.414 362 220 9 185 505 16 368 9.19e-31 123
Msa0562390 MtrunA17_Chr1g0187811 25.201 373 218 13 186 510 134 493 1.11e-30 124
Msa0562390 MtrunA17_Chr7g0220001 29.664 327 184 11 214 500 16 336 1.58e-30 121
Msa0562390 MtrunA17_Chr2g0311701 26.558 369 214 13 186 511 22 376 2.69e-30 122
Msa0562390 MtrunA17_Chr2g0311681 25.815 368 216 14 186 510 16 369 3.27e-30 121
Msa0562390 MtrunA17_Chr2g0311711 26.393 341 200 12 186 487 20 348 3.63e-30 121
Msa0562390 MtrunA17_Chr1g0184121 27.052 329 189 12 210 497 8 326 5.05e-30 120
Msa0562390 MtrunA17_Chr6g0455481 45.528 123 67 0 364 486 196 318 8.22e-30 119
Msa0562390 MtrunA17_Chr8g0336801 37.415 147 88 2 367 510 11 156 8.63e-30 114
Msa0562390 MtrunA17_Chr2g0311631 37.107 159 92 2 360 511 205 362 9.15e-30 120
Msa0562390 MtrunA17_Chr4g0045461 28.912 294 158 9 240 483 26 318 3.86e-29 118
Msa0562390 MtrunA17_Chr1g0167961 26.377 345 198 12 185 489 23 351 6.70e-29 117
Msa0562390 MtrunA17_Chr8g0354241 25.429 350 211 11 204 510 32 374 9.73e-29 117
Msa0562390 MtrunA17_Chr2g0311691 25.745 369 215 14 186 510 16 369 1.10e-28 117
Msa0562390 MtrunA17_Chr3g0125421 27.010 311 180 7 214 482 14 319 1.52e-28 116
Msa0562390 MtrunA17_Chr5g0394071 43.200 125 64 2 362 486 42 159 1.83e-28 111
Msa0562390 MtrunA17_Chr2g0319491 28.846 260 151 8 239 467 32 288 2.86e-28 115
Msa0562390 MtrunA17_Chr7g0235951 23.925 372 218 12 185 510 21 373 3.27e-28 115
Msa0562390 MtrunA17_Chr3g0130391 26.045 311 184 4 214 482 43 349 6.56e-28 115
Msa0562390 MtrunA17_Chr1g0148771 28.523 298 163 11 240 501 63 346 6.96e-28 114
Msa0562390 MtrunA17_Chr4g0055591 22.995 374 231 12 177 510 5 361 8.81e-28 114
Msa0562390 MtrunA17_Chr8g0371931 28.996 269 150 7 239 469 38 303 9.39e-28 114
Msa0562390 MtrunA17_Chr7g0233661 42.400 125 69 2 362 484 16 139 1.25e-27 108
Msa0562390 MtrunA17_Chr7g0220011 40.000 130 78 0 368 497 196 325 1.50e-27 113
Msa0562390 MtrunA17_Chr3g0102041 27.881 269 153 8 239 469 38 303 1.71e-27 113
Msa0562390 MtrunA17_Chr8g0371921 28.731 268 152 6 239 469 38 303 2.93e-27 112
Msa0562390 MtrunA17_Chr4g0068891 42.857 140 74 3 365 499 172 310 3.76e-27 111
Msa0562390 MtrunA17_Chr4g0064771 34.320 169 104 3 339 504 43 207 3.94e-27 108
Msa0562390 MtrunA17_Chr1g0167951 24.176 364 222 10 185 510 8 355 5.12e-27 112
Msa0562390 MtrunA17_Chr7g0235981 21.170 359 214 8 186 512 8 329 1.56e-26 110
Msa0562390 MtrunA17_Chr3g0114871 28.470 281 150 9 205 446 7 275 1.76e-26 108
Msa0562390 MtrunA17_Chr1g0184241 24.194 372 221 11 171 501 7 358 2.01e-26 110
Msa0562390 MtrunA17_Chr1g0191201 27.157 313 175 7 215 482 32 336 3.18e-26 110
Msa0562390 MtrunA17_Chr5g0405411 28.253 269 152 7 239 469 38 303 4.07e-26 109
Msa0562390 MtrunA17_Chr1g0167931 25.959 339 212 9 184 510 7 318 1.72e-25 107
Msa0562390 MtrunA17_Chr4g0037611 33.939 165 99 5 352 508 21 183 4.16e-25 102
Msa0562390 MtrunA17_Chr8g0364471 23.120 359 225 11 186 505 22 368 6.97e-25 106
Msa0562390 MtrunA17_Chr2g0293931 39.855 138 66 4 365 486 53 189 4.06e-24 100
Msa0562390 MtrunA17_Chr8g0336871 35.374 147 85 3 367 510 35 174 1.31e-23 97.8
Msa0562390 MtrunA17_Chr7g0236011 22.826 368 225 12 186 510 22 373 5.51e-23 100
Msa0562390 MtrunA17_Chr4g0066991 22.969 357 218 11 186 510 22 353 9.23e-23 99.8
Msa0562390 MtrunA17_Chr8g0335411 22.616 367 227 11 186 510 22 373 1.32e-22 99.8
Msa0562390 MtrunA17_Chr8g0384461 34.586 133 85 2 351 482 197 328 1.07e-21 96.7
Msa0562390 MtrunA17_Chr1g0194321 32.515 163 94 4 364 512 174 334 2.92e-21 95.1
Msa0562390 MtrunA17_Chr2g0285931 23.279 305 191 8 234 499 22 322 9.15e-21 93.6
Msa0562390 MtrunA17_Chr8g0358941 24.333 300 185 8 239 499 26 322 1.24e-20 93.2
Msa0562390 MtrunA17_Chr8g0384481 36.090 133 83 2 351 482 208 339 1.78e-20 93.2
Msa0562390 MtrunA17_Chr7g0247991 21.892 370 219 12 186 507 22 369 3.79e-20 92.4
Msa0562390 MtrunA17_Chr2g0313111 24.161 298 189 9 234 499 22 314 4.46e-20 91.3
Msa0562390 MtrunA17_Chr5g0420731 62.500 72 22 2 199 270 7 73 1.14e-19 84.3
Msa0562390 MtrunA17_Chr2g0314361 41.772 79 46 0 432 510 1 79 1.22e-19 83.6
Msa0562390 MtrunA17_Chr2g0314361 46.479 71 35 1 129 196 10 80 1.14e-12 63.5
Msa0562390 MtrunA17_Chr3g0105281 29.572 257 134 9 253 467 37 288 1.63e-19 89.7
Msa0562390 MtrunA17_Chr4g0053251 27.368 285 151 9 239 469 7 289 2.15e-19 89.4
Msa0562390 MtrunA17_Chr2g0319521 50.746 67 32 1 365 431 59 124 8.86e-18 80.1
Msa0562390 MtrunA17_Chr4g0052251 29.375 160 103 5 349 499 164 322 3.16e-17 82.8
Msa0562390 MtrunA17_Chr1g0158011 33.333 159 99 5 358 511 106 262 7.90e-17 80.5
Msa0562390 MtrunA17_Chr4g0011311 21.875 288 162 11 186 431 22 288 1.31e-16 80.9
Msa0562390 MtrunA17_Chr1g0158031 35.878 131 77 4 356 482 25 152 2.21e-15 74.3
Msa0562390 MtrunA17_Chr7g0219991 54.839 62 28 0 368 429 293 354 2.27e-15 77.8
Msa0562390 MtrunA17_Chr3g0092531 29.897 97 67 1 380 476 177 272 5.39e-15 75.9
Msa0562390 MtrunA17_Chr8g0364171 36.047 86 48 2 346 431 48 126 9.89e-15 71.6
Msa0562390 MtrunA17_Chr7g0256741 31.126 151 98 5 365 513 169 315 1.13e-14 75.1
Msa0562390 MtrunA17_Chr2g0311611 40.278 72 35 2 367 431 1 71 1.44e-14 68.6
Msa0562390 MtrunA17_Chr6g0486831 32.773 119 73 3 379 492 206 322 6.83e-14 73.2
Msa0562390 MtrunA17_Chr8g0389941 34.426 122 69 4 384 500 222 337 7.68e-14 72.8
Msa0562390 MtrunA17_Chr7g0247741 31.538 130 83 4 365 490 165 292 1.01e-13 72.4
Msa0562390 MtrunA17_Chr4g0009561 29.787 141 93 4 369 504 176 315 1.15e-13 72.0
Msa0562390 MtrunA17_Chr4g0004061 33.088 136 88 3 365 498 167 301 1.38e-13 71.6
Msa0562390 MtrunA17_Chr3g0092581 27.835 97 69 1 380 476 49 144 1.42e-13 69.3
Msa0562390 MtrunA17_Chr8g0348951 27.143 280 151 13 234 469 2 272 1.95e-13 71.2
Msa0562390 MtrunA17_Chr3g0138351 25.203 246 152 9 267 483 48 290 2.04e-13 71.2
Msa0562390 MtrunA17_Chr4g0004071 31.111 135 91 2 365 498 167 300 2.74e-13 70.9
Msa0562390 MtrunA17_Chr1g0161101 36.364 121 62 5 356 471 392 502 3.99e-13 71.6
Msa0562390 MtrunA17_Chr8g0362741 21.111 270 171 9 186 431 22 273 5.52e-13 69.7
Msa0562390 MtrunA17_Chr8g0375621 62.500 40 15 0 357 396 15 54 1.57e-11 59.7
Msa0562390 MtrunA17_Chr4g0009541 24.051 237 148 7 277 483 54 288 1.77e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0562390 AT1G17020.1 46.000 350 149 5 199 510 11 358 2.81e-107 324
Msa0562390 AT1G17020.1 35.928 167 67 4 8 137 14 177 6.03e-22 97.8
Msa0562390 AT4G25300.1 45.429 350 150 6 199 510 10 356 6.57e-102 310
Msa0562390 AT4G25300.1 40.252 159 55 4 8 129 13 168 1.58e-23 102
Msa0562390 AT1G17010.1 45.714 350 150 6 199 510 11 358 6.51e-100 305
Msa0562390 AT1G17010.1 38.365 159 59 5 8 129 14 170 1.79e-21 96.3
Msa0562390 AT1G78550.1 43.103 348 160 4 199 510 11 356 7.11e-100 305
Msa0562390 AT1G78550.1 36.216 185 76 6 8 155 14 193 2.38e-22 99.0
Msa0562390 AT1G78550.1 52.542 59 28 0 129 187 287 345 1.28e-11 66.6
Msa0562390 AT4G25310.1 46.264 348 147 7 199 510 10 353 3.15e-97 298
Msa0562390 AT4G25310.1 38.788 165 62 4 8 137 13 173 2.87e-19 89.7
Msa0562390 AT1G78550.2 45.489 266 119 1 271 510 13 278 7.79e-85 264
Msa0562390 AT1G78550.2 45.679 81 42 1 75 155 37 115 4.81e-13 70.1
Msa0562390 AT1G78550.2 52.542 59 28 0 129 187 209 267 6.20e-12 66.6
Msa0562390 AT4G25310.2 44.860 321 163 6 199 510 10 325 2.45e-82 259
Msa0562390 AT4G25310.2 38.788 165 62 4 8 137 13 173 1.44e-19 90.1
Msa0562390 AT3G21420.1 38.701 354 177 6 197 510 9 362 4.11e-71 231
Msa0562390 AT2G38240.1 34.770 348 183 5 204 512 11 353 5.30e-59 199
Msa0562390 AT4G25300.2 56.081 148 65 0 363 510 115 262 5.58e-57 191
Msa0562390 AT1G49390.1 33.631 336 182 8 204 500 8 341 5.21e-56 191
Msa0562390 AT5G05600.1 31.858 339 192 4 205 505 27 364 8.75e-53 183
Msa0562390 AT5G20550.1 33.234 337 183 8 204 500 8 342 1.08e-51 179
Msa0562390 AT5G20400.1 31.845 336 188 7 204 500 8 341 2.24e-51 179
Msa0562390 AT3G55970.1 31.700 347 195 5 205 509 14 360 9.32e-51 177
Msa0562390 AT3G11180.1 32.456 342 186 5 205 505 56 393 1.21e-50 178
Msa0562390 AT1G49390.2 35.659 258 138 4 271 500 5 262 3.56e-50 173
Msa0562390 AT3G11180.2 33.229 319 168 5 205 482 56 370 1.29e-49 176
Msa0562390 AT4G22880.1 30.395 329 182 7 200 482 2 329 2.78e-49 173
Msa0562390 AT4G22880.2 30.395 329 182 7 200 482 2 329 2.78e-49 173
Msa0562390 AT4G22880.3 30.395 329 182 7 200 482 2 329 2.78e-49 173
Msa0562390 AT5G54000.2 31.454 337 189 7 204 500 8 342 1.02e-47 169
Msa0562390 AT5G24530.1 32.923 325 171 10 214 499 13 329 1.50e-47 168
Msa0562390 AT2G36690.2 30.595 353 190 11 204 510 20 363 4.37e-45 162
Msa0562390 AT2G36690.1 30.595 353 190 11 204 510 20 363 4.37e-45 162
Msa0562390 AT5G54000.1 32.558 258 146 3 271 500 5 262 3.46e-43 154
Msa0562390 AT4G10490.1 29.204 339 197 7 213 513 15 348 1.88e-42 155
Msa0562390 AT4G10500.1 29.341 334 196 7 212 509 16 345 2.51e-40 149
Msa0562390 AT4G16330.2 31.148 305 165 8 244 508 63 362 3.98e-40 149
Msa0562390 AT3G13610.1 27.616 344 204 9 204 510 26 361 9.64e-39 145
Msa0562390 AT5G59540.1 27.714 350 203 10 204 510 24 366 8.38e-38 142
Msa0562390 AT3G19010.3 32.593 270 147 11 239 483 27 286 2.61e-37 140
Msa0562390 AT1G06650.2 28.796 382 192 14 184 510 13 369 5.12e-37 140
Msa0562390 AT4G16330.1 33.621 232 121 5 305 508 30 256 6.50e-37 137
Msa0562390 AT1G06645.1 28.392 398 221 14 153 510 6 379 1.12e-36 140
Msa0562390 AT5G59530.1 27.874 348 202 11 205 510 24 364 1.91e-36 139
Msa0562390 AT1G12010.1 28.333 300 169 7 239 502 6 295 2.49e-36 137
Msa0562390 AT1G55290.1 27.273 341 202 10 204 506 25 357 2.60e-36 138
Msa0562390 AT1G06640.1 27.807 374 206 12 184 510 13 369 5.46e-36 137
Msa0562390 AT1G80340.1 31.333 300 155 10 215 474 26 314 7.14e-36 137
Msa0562390 AT1G77330.1 27.852 298 171 6 240 499 3 294 1.24e-35 135
Msa0562390 AT1G05010.1 30.325 277 144 8 237 474 1 267 1.33e-35 135
Msa0562390 AT2G30830.1 27.548 363 215 11 184 510 8 358 1.35e-35 136
Msa0562390 AT5G05600.2 29.811 265 147 4 205 431 27 290 1.77e-35 134
Msa0562390 AT1G62380.1 27.551 294 163 8 239 494 6 287 2.74e-35 134
Msa0562390 AT3G12900.1 29.412 340 195 11 204 506 21 352 4.30e-35 135
Msa0562390 AT5G43440.1 24.590 366 232 8 184 510 5 365 4.88e-35 135
Msa0562390 AT1G04380.1 29.341 334 190 10 214 510 21 345 7.52e-35 134
Msa0562390 AT1G06620.1 27.298 359 216 9 187 510 17 365 9.91e-35 134
Msa0562390 AT1G04350.1 29.191 346 200 12 204 510 21 360 2.12e-34 133
Msa0562390 AT5G08640.2 25.000 324 207 6 202 490 3 325 2.39e-34 132
Msa0562390 AT5G08640.1 25.000 324 207 6 202 490 3 325 2.39e-34 132
Msa0562390 AT3G19010.1 30.405 296 149 11 239 483 27 316 2.76e-34 132
Msa0562390 AT3G19010.4 30.405 296 149 11 239 483 27 316 2.76e-34 132
Msa0562390 AT1G60980.1 31.731 312 157 8 215 478 35 338 3.90e-34 132
Msa0562390 AT4G25420.1 28.754 313 170 8 215 482 39 343 7.96e-34 132
Msa0562390 AT1G03410.2 27.299 348 206 13 190 499 13 351 1.06e-33 131
Msa0562390 AT1G44090.1 28.205 312 178 6 211 481 38 344 1.80e-33 131
Msa0562390 AT1G03410.1 27.299 348 206 13 190 499 50 388 2.06e-33 131
Msa0562390 AT5G51810.1 27.829 327 177 9 200 482 30 341 7.66e-33 129
Msa0562390 AT5G12270.1 27.515 338 199 10 212 510 29 359 7.73e-33 129
Msa0562390 AT2G44800.1 28.291 357 215 11 190 509 1 353 8.15e-33 129
Msa0562390 AT3G60290.1 27.405 343 208 8 204 509 15 353 9.46e-33 128
Msa0562390 AT5G07200.1 29.836 305 163 7 215 474 36 334 1.70e-32 128
Msa0562390 AT1G15550.1 27.219 338 180 11 212 496 26 350 2.30e-32 127
Msa0562390 AT3G61400.1 27.922 308 179 10 240 505 60 366 7.83e-32 126
Msa0562390 AT2G30840.1 26.158 367 219 13 184 510 8 362 1.26e-31 125
Msa0562390 AT5G43450.1 25.723 346 212 9 204 510 23 362 1.38e-31 125
Msa0562390 AT1G03400.1 27.778 360 200 14 190 510 13 351 2.41e-31 124
Msa0562390 AT3G19000.1 30.508 295 153 9 239 484 31 322 2.76e-31 124
Msa0562390 AT3G55970.2 29.368 269 148 5 205 431 14 282 3.08e-31 123
Msa0562390 AT4G21200.1 30.686 277 155 8 239 486 41 309 3.89e-30 120
Msa0562390 AT1G80330.1 26.899 316 189 7 212 486 15 329 4.19e-30 121
Msa0562390 AT2G19590.1 28.723 282 151 9 239 483 10 278 7.30e-30 119
Msa0562390 AT2G30840.3 25.613 367 215 14 184 510 8 356 1.79e-28 116
Msa0562390 AT3G51240.1 28.731 268 152 6 239 469 37 302 7.00e-28 115
Msa0562390 AT5G07480.1 26.163 344 204 10 210 510 18 354 4.22e-27 112
Msa0562390 AT2G19590.2 29.046 241 133 7 271 483 33 263 5.76e-26 108
Msa0562390 AT1G03400.2 25.773 388 200 15 190 510 13 379 7.96e-26 109
Msa0562390 AT5G07480.2 31.111 180 114 4 339 510 68 245 1.68e-25 105
Msa0562390 AT2G25450.1 25.000 364 224 12 184 510 8 359 2.22e-25 107
Msa0562390 AT5G63590.1 28.727 275 159 8 235 475 10 281 3.50e-25 106
Msa0562390 AT3G51240.2 43.119 109 59 2 363 469 111 218 1.05e-23 101
Msa0562390 AT4G21690.1 29.355 310 156 12 226 485 31 327 1.43e-23 102
Msa0562390 AT1G78440.1 25.163 306 185 8 233 499 11 311 2.52e-23 101
Msa0562390 AT4G25420.2 26.616 263 140 8 214 431 38 292 1.27e-22 98.6
Msa0562390 AT5G51810.2 27.170 265 138 8 214 434 40 293 1.81e-22 98.2
Msa0562390 AT1G50960.1 28.223 287 160 10 239 490 39 314 1.88e-22 99.0
Msa0562390 AT5G63600.1 25.753 299 180 8 235 501 28 316 5.63e-22 97.4
Msa0562390 AT5G43935.1 26.829 287 171 11 230 490 9 282 1.05e-21 95.9
Msa0562390 AT1G02400.1 37.143 140 82 4 365 499 180 318 1.14e-21 96.7
Msa0562390 AT3G49620.1 28.169 284 149 8 240 469 34 316 1.18e-21 97.1
Msa0562390 AT3G19010.2 28.340 247 120 11 239 434 27 267 1.58e-21 95.5
Msa0562390 AT1G06640.2 27.586 290 150 10 184 430 13 285 3.48e-21 94.7
Msa0562390 AT1G06640.3 27.148 291 152 10 184 431 13 286 3.68e-21 94.0
Msa0562390 AT1G06650.1 27.632 304 144 12 184 436 13 291 3.70e-21 94.7
Msa0562390 AT5G63600.2 25.667 300 180 9 235 501 28 317 4.01e-21 94.7
Msa0562390 AT3G19000.2 28.512 242 121 9 239 431 31 269 1.80e-20 92.0
Msa0562390 AT1G30040.1 24.823 282 173 8 240 486 31 308 2.16e-20 92.8
Msa0562390 AT5G63595.1 27.273 264 158 9 231 472 16 267 3.40e-20 91.3
Msa0562390 AT1G47990.1 35.821 134 71 5 364 483 160 292 5.49e-20 91.3
Msa0562390 AT1G06620.2 26.429 280 156 9 187 430 17 282 3.85e-19 88.2
Msa0562390 AT3G49630.2 39.623 106 62 2 365 469 114 218 4.10e-19 87.4
Msa0562390 AT5G59540.2 25.746 268 152 9 204 431 24 284 4.10e-19 88.2
Msa0562390 AT3G50210.2 39.252 107 63 2 375 480 118 223 1.08e-18 86.3
Msa0562390 AT3G49630.3 39.623 106 62 2 365 469 183 287 1.24e-18 87.4
Msa0562390 AT3G61400.2 25.564 266 159 8 204 431 24 288 1.39e-18 86.7
Msa0562390 AT3G49630.1 39.623 106 62 2 365 469 187 291 1.50e-18 87.4
Msa0562390 AT2G34555.1 26.241 282 168 9 240 486 27 303 2.59e-18 86.7
Msa0562390 AT4G22870.1 45.238 84 45 1 400 482 2 85 3.08e-18 80.9
Msa0562390 AT3G50210.4 39.252 107 63 2 375 480 200 305 3.56e-18 86.3
Msa0562390 AT3G50210.1 39.252 107 63 2 375 480 200 305 3.56e-18 86.3
Msa0562390 AT3G50210.3 39.252 107 63 2 375 480 200 305 3.56e-18 86.3
Msa0562390 AT1G04380.2 28.968 252 136 9 214 431 21 263 9.66e-18 84.0
Msa0562390 AT5G43440.2 22.378 286 175 8 184 430 5 282 2.05e-17 83.2
Msa0562390 AT4G22870.2 43.678 87 45 2 400 482 40 126 9.57e-17 77.8
Msa0562390 AT2G30840.2 24.382 283 167 10 184 430 8 279 1.36e-16 81.3
Msa0562390 AT2G06960.1 33.333 138 77 4 361 498 24 146 9.60e-16 75.1
Msa0562390 AT5G43450.2 23.954 263 158 8 204 430 23 279 2.69e-15 77.0
Msa0562390 AT4G23340.2 31.783 129 83 3 367 491 47 174 4.16e-15 74.7
Msa0562390 AT3G47190.1 33.645 107 66 3 362 467 192 294 9.50e-15 75.9
Msa0562390 AT4G23340.1 31.783 129 83 3 367 491 165 292 2.85e-14 74.3
Msa0562390 AT1G52820.1 31.343 134 90 2 365 497 170 302 3.14e-14 74.3
Msa0562390 AT1G14130.1 33.333 123 80 1 366 486 157 279 3.56e-13 70.9
Msa0562390 AT4G03070.1 34.167 120 76 3 380 498 190 307 4.79e-13 70.5
Msa0562390 AT3G46500.4 33.333 129 78 4 365 487 43 169 4.83e-13 68.2
Msa0562390 AT4G03050.2 35.714 126 78 3 377 500 271 395 5.10e-13 71.2
Msa0562390 AT4G03050.1 35.714 126 78 3 377 500 271 395 5.10e-13 71.2
Msa0562390 AT3G46500.5 33.333 129 78 4 365 487 179 305 1.24e-12 69.3
Msa0562390 AT3G46500.10 33.333 129 78 4 365 487 105 231 1.26e-12 68.2
Msa0562390 AT3G46500.1 33.333 129 78 4 365 487 105 231 1.26e-12 68.2
Msa0562390 AT1G14120.2 25.632 277 170 6 240 486 8 278 8.88e-12 66.6
Msa0562390 AT1G14120.1 25.632 277 170 6 240 486 8 278 8.88e-12 66.6
Msa0562390 AT1G14120.3 25.632 277 170 6 240 486 8 278 8.88e-12 66.6
Msa0562390 AT5G63580.2 23.144 229 144 5 230 427 9 236 1.53e-11 65.1
Msa0562390 AT5G63580.1 23.377 231 141 7 230 427 9 236 2.67e-11 64.3

Find 142 sgRNAs with CRISPR-Local

Find 389 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAAACACTGCAGGTGTATT+TGG 0.177833 4_1:+62211527 None:intergenic
TCTTCTGGCTCAACTGAATA+TGG 0.215292 4_1:+62207908 None:intergenic
ATGCCTCCTTTGCTAATTCT+TGG 0.216681 4_1:+62213417 None:intergenic
GCTAACATTGCTTGCATGTT+AGG 0.232431 4_1:+62208306 None:intergenic
GTGAAAACTTTAGTACAATT+TGG 0.241355 4_1:-62210586 Msa0562390:intron
GCATTAGGCATGGGTTTAAT+AGG 0.271956 4_1:+62208891 None:intergenic
AAGTCTCATTCTGATATTAA+TGG 0.272225 4_1:-62208981 Msa0562390:CDS
CCAACATACCCCTACCATTC+AGG 0.276189 4_1:-62212829 Msa0562390:intron
GCCAATGACTCGGTCTGGTT+GGG 0.299602 4_1:+62209007 None:intergenic
GATAGACTATGAGGCATAAT+TGG 0.305639 4_1:+62207875 None:intergenic
AATGCTTTCATCATCAATAT+TGG 0.308862 4_1:-62208873 Msa0562390:CDS
GAAGGAGACTTGGAGGGATT+TGG 0.312853 4_1:-62209867 Msa0562390:CDS
AAGATCTTGAGACAACAATT+TGG 0.323730 4_1:+62210380 None:intergenic
CTCTTACAAGAACAGTTAAT+AGG 0.324904 4_1:-62208128 Msa0562390:three_prime_UTR
AGATAGAGAACCTGAATGTT+TGG 0.333144 4_1:+62209736 None:intergenic
AGGATAATAATTCACCCTTA+TGG 0.333631 4_1:+62209037 None:intergenic
AAAGAAACCCCATTCTTTGC+AGG 0.335772 4_1:+62210320 None:intergenic
ATTGGAGTAGAAATTTCTTC+TGG 0.336986 4_1:+62207893 None:intergenic
GATGGATATAAGATCTATTC+TGG 0.350399 4_1:-62210535 Msa0562390:CDS
GATAGAGAACCTGAATGTTT+GGG 0.362575 4_1:+62209737 None:intergenic
AACATTGTTTGAACTTTCAA+TGG 0.372915 4_1:-62209916 Msa0562390:CDS
AAAGGGGATGTGGAGGGATA+TGG 0.384110 4_1:-62212950 Msa0562390:CDS
GGGGATTTGGTTGAATATAT+GGG 0.386324 4_1:+62209758 None:intergenic
TGGAGTAAGTTCTTCCTTAG+TGG 0.387512 4_1:-62209961 Msa0562390:intron
TAATATCAGAATGAGACTTT+AGG 0.391303 4_1:+62208985 None:intergenic
CTAACATTGCTTGCATGTTA+GGG 0.394361 4_1:+62208307 None:intergenic
AACATAGCGATCTGGAACTT+TGG 0.394724 4_1:+62213391 None:intergenic
CATAGGAACTCAAGCCATAA+GGG 0.408246 4_1:-62209051 Msa0562390:CDS
CCAATGACTCGGTCTGGTTG+GGG 0.412025 4_1:+62209008 None:intergenic
TACACTCTGCCTGCAAAGAA+TGG 0.412113 4_1:-62210329 Msa0562390:CDS
TCTTACAAGAACAGTTAATA+GGG 0.412593 4_1:-62208127 Msa0562390:three_prime_UTR
CCCCAACCAGACCGAGTCAT+TGG 0.423585 4_1:-62209008 Msa0562390:CDS
GCTCAGGTTCATTGAGATCA+TGG 0.433585 4_1:+62213273 None:intergenic
TAGTGTAGTTTCTTCAGCTC+AGG 0.434430 4_1:+62213257 None:intergenic
GGCCAATGACTCGGTCTGGT+TGG 0.434643 4_1:+62209006 None:intergenic
ACACTCTGCCTGCAAAGAAT+GGG 0.435389 4_1:-62210328 Msa0562390:CDS
CTTTGCTAATTCTTGGACAA+AGG 0.438677 4_1:+62213424 None:intergenic
CTTCAAATCAGCGATATAGA+AGG 0.444568 4_1:-62208945 Msa0562390:CDS
ACATAGGAACTCAAGCCATA+AGG 0.446381 4_1:-62209052 Msa0562390:CDS
TTAAGAATTGTATTAAAAGC+AGG 0.451449 4_1:+62211572 None:intergenic
CAATATTGGTGACATATTAG+AGG 0.465361 4_1:-62208859 Msa0562390:intron
AGACTTGGAGGGATTTGGTC+AGG 0.466314 4_1:-62209862 Msa0562390:CDS
GGAGTTACAAGGCTTGGTGC+TGG 0.471092 4_1:+62211548 None:intergenic
TCACTTTGCCACCCCACAAA+AGG 0.472216 4_1:-62212868 Msa0562390:CDS
CAGGTGTATTTGGAGTTACA+AGG 0.474927 4_1:+62211537 None:intergenic
CTTTCTTGAGTAACAAGACT+TGG 0.475463 4_1:+62208276 None:intergenic
ACTTGAGGTAAAGAAGAGGT+AGG 0.479675 4_1:+62210420 None:intergenic
CTGAAGAACAGAAACTAGAA+TGG 0.480542 4_1:-62209827 Msa0562390:CDS
AACATATCGCTCTGGAACAT+TGG 0.481320 4_1:+62210476 None:intergenic
CTATATCGCTGATTTGAAGA+AGG 0.483204 4_1:+62208949 None:intergenic
TTTGCTAATTCTTGGACAAA+GGG 0.483895 4_1:+62213425 None:intergenic
TTGCTCGATGCTCAATGCTT+GGG 0.484949 4_1:+62208376 None:intergenic
AGTACTACAGAGTCTTGATC+TGG 0.489953 4_1:+62210450 None:intergenic
TTTAGGCCAATGACTCGGTC+TGG 0.490454 4_1:+62209002 None:intergenic
AATTTGCTAAGGTCAATAAC+AGG 0.490884 4_1:+62213305 None:intergenic
ATTGCTCGATGCTCAATGCT+TGG 0.491845 4_1:+62208375 None:intergenic
ATATTGATGATGAAAGCATT+AGG 0.492606 4_1:+62208876 None:intergenic
AGTGTTGTAGATCACTTCAA+TGG 0.493470 4_1:-62208231 Msa0562390:CDS
CCTGAATGGTAGGGGTATGT+TGG 0.495441 4_1:+62212829 None:intergenic
TCAACTGAATATGGAAAAGA+AGG 0.496661 4_1:+62207917 None:intergenic
CTGTTCTTCAGATAAAATGA+AGG 0.503417 4_1:+62209839 None:intergenic
GCAGAAAGAAGGAGACTTGG+AGG 0.503765 4_1:-62209874 Msa0562390:CDS
AGAAGTTTGGGCAAACAGAA+AGG 0.504508 4_1:-62212968 Msa0562390:intron
GAAGATAGAACCTGAATGGT+AGG 0.509433 4_1:+62212819 None:intergenic
TATCCTTTGAAGTATTCTCC+TGG 0.509899 4_1:+62211494 None:intergenic
ATAACAGGAAGTTGAGGTAA+AGG 0.513393 4_1:+62213320 None:intergenic
TGAGTAACAAGACTTGGTGC+TGG 0.514891 4_1:+62208282 None:intergenic
TTGTAACTTGATAGACTATG+AGG 0.515228 4_1:+62207866 None:intergenic
CTAATTCTTCTATACTGTGC+TGG 0.518608 4_1:+62208252 None:intergenic
GAAGTTTGGGCAAACAGAAA+GGG 0.521882 4_1:-62212967 Msa0562390:intron
GGGCAAACAGAAAGGGGATG+TGG 0.523583 4_1:-62212960 Msa0562390:CDS
GGATGTGGAGGGATATGGTC+AGG 0.526046 4_1:-62212945 Msa0562390:CDS
CTAATTCTCTTAAACACTGC+AGG 0.526139 4_1:+62211518 None:intergenic
AAGATAGAACCTGAATGGTA+GGG 0.526437 4_1:+62212820 None:intergenic
GTATTTGGAGTTACAAGGCT+TGG 0.526589 4_1:+62211542 None:intergenic
AATGAAATGAAGATCACAAA+GGG 0.527814 4_1:-62208171 Msa0562390:CDS
GAAAGAAGATAGAACCTGAA+TGG 0.529944 4_1:+62212815 None:intergenic
TCTCTGAGTTAACTGTTGCT+CGG 0.531638 4_1:+62211627 None:intergenic
CTTTGCTAGCTCTTGAACGG+AGG 0.537504 4_1:+62210509 None:intergenic
AAGAAGCTATGGCAGAAAGA+AGG 0.537844 4_1:-62209885 Msa0562390:CDS
TCCCACAGAGTTCTTGTGCA+AGG 0.538711 4_1:+62211471 None:intergenic
TGGAAGAAAAGAAGAAGCTA+TGG 0.539816 4_1:-62209896 Msa0562390:CDS
TTCCTTTGCTAGCTCTTGAA+CGG 0.540559 4_1:+62210506 None:intergenic
ATGGCAGAAAGAAGGAGACT+TGG 0.542561 4_1:-62209877 Msa0562390:CDS
AATTCTTGGACAAAGGGCAC+TGG 0.548573 4_1:+62213431 None:intergenic
TGAAGAACAGAAACTAGAAT+GGG 0.550147 4_1:-62209826 Msa0562390:CDS
ATGATGAAAGCATTAGGCAT+GGG 0.551312 4_1:+62208882 None:intergenic
TCTGGAAGAACATATCGCTC+TGG 0.551453 4_1:+62210468 None:intergenic
GTCTCAAGATCTTAACCTCA+AGG 0.557860 4_1:-62210370 Msa0562390:CDS
TAAGAATTGTATTAAAAGCA+GGG 0.558099 4_1:+62211573 None:intergenic
TGTGGACGAACATAGCGATC+TGG 0.561235 4_1:+62213383 None:intergenic
GTAGTAGTTGAAGATAATGT+TGG 0.563184 4_1:+62213350 None:intergenic
CAATGACTCGGTCTGGTTGG+GGG 0.565245 4_1:+62209009 None:intergenic
GGGATTTGGTTGAATATATG+GGG 0.566122 4_1:+62209759 None:intergenic
CTCAGGTTCATTGAGATCAT+GGG 0.568095 4_1:+62213274 None:intergenic
CTTGAGGTAAAGAAGAGGTA+GGG 0.569099 4_1:+62210421 None:intergenic
AAAAGCAGGGCTGTAGAATG+AGG 0.571287 4_1:+62211586 None:intergenic
ATCGCTGATTTGAAGAAGGA+TGG 0.571635 4_1:+62208953 None:intergenic
CAAACAGAAAGGGGATGTGG+AGG 0.573605 4_1:-62212957 Msa0562390:CDS
ATAACTGAGGTATTTAACAT+AGG 0.578720 4_1:-62209068 Msa0562390:intron
AAACAGAAAGGGGATGTGGA+GGG 0.579291 4_1:-62212956 Msa0562390:CDS
CAGTTAACTCAGAGAAGGAG+AGG 0.580366 4_1:-62211619 Msa0562390:CDS
TCAGGCCTTTGTTGTCTCTG+AGG 0.585985 4_1:-62212927 Msa0562390:CDS
TAGTTAATTCAGAGAAAGAG+AGG 0.587418 4_1:-62208353 Msa0562390:CDS
GATGATGAAAGCATTAGGCA+TGG 0.588056 4_1:+62208881 None:intergenic
TTTGCTAGCTCTTGAACGGA+GGG 0.591527 4_1:+62210510 None:intergenic
GTGTTTAAGAGAATTAGTCC+AGG 0.594501 4_1:-62211512 Msa0562390:CDS
AGATAGAACCTGAATGGTAG+GGG 0.599489 4_1:+62212821 None:intergenic
TGTCCAAGAATTAGCAAAGG+AGG 0.599738 4_1:-62213420 Msa0562390:CDS
AAACACTACCTTCTCACTCA+AGG 0.602234 4_1:-62209785 Msa0562390:CDS
TCTCAAGCTCATGTCCCTTG+AGG 0.603143 4_1:+62210355 None:intergenic
TAACATTGCTTGCATGTTAG+GGG 0.603992 4_1:+62208308 None:intergenic
GAAATGAAGATCACAAAGGG+TGG 0.608195 4_1:-62208168 Msa0562390:CDS
AGTCCAGGAGAATACTTCAA+AGG 0.608302 4_1:-62211497 Msa0562390:CDS
GGGATGATAACAATTTGCTA+AGG 0.609631 4_1:+62213294 None:intergenic
CAGTTAATAGGGAATTGAGA+TGG 0.610180 4_1:-62208116 Msa0562390:three_prime_UTR
AGGGCTGTAGAATGAGGCTA+TGG 0.612431 4_1:+62211592 None:intergenic
AGCAACAGTTAACTCAGAGA+AGG 0.614231 4_1:-62211624 Msa0562390:CDS
CACTCTGCCTGCAAAGAATG+GGG 0.620308 4_1:-62210327 Msa0562390:intron
GGTATGTTGGAAAACAAGTG+AGG 0.620343 4_1:+62212842 None:intergenic
TGGGGATTCCTTGAGTGAGA+AGG 0.623004 4_1:+62209777 None:intergenic
ATAGAGAACCTGAATGTTTG+GGG 0.623894 4_1:+62209738 None:intergenic
AATTTGGCAAGATCGATGAC+AGG 0.629414 4_1:+62210396 None:intergenic
TTAGTGGAAAATATGAAGAG+AGG 0.631277 4_1:-62209945 Msa0562390:CDS
AAGTTTGGGCAAACAGAAAG+GGG 0.633809 4_1:-62212966 Msa0562390:CDS
TCTCAAGATCTTAACCTCAA+GGG 0.634730 4_1:-62210369 Msa0562390:CDS
CAGAAAGAAGGAGACTTGGA+GGG 0.636036 4_1:-62209873 Msa0562390:CDS
CTCCGTTCAAGAGCTAGCAA+AGG 0.639957 4_1:-62210508 Msa0562390:CDS
AATGTTGGACGGTCATGATG+TGG 0.639967 4_1:+62213365 None:intergenic
GTATTCAGATGAACGTAGGA+TGG 0.643562 4_1:-62210553 Msa0562390:intron
AGGAACTTGAGGTAAAGAAG+AGG 0.643707 4_1:+62210416 None:intergenic
AGGTCAATAACAGGAAGTTG+AGG 0.644537 4_1:+62213314 None:intergenic
ACTGAATATGGAAAAGAAGG+AGG 0.651740 4_1:+62207920 None:intergenic
AGATCGATGACAGGAACTTG+AGG 0.653773 4_1:+62210405 None:intergenic
TGATTTGAAGAAGGATGGTG+AGG 0.656227 4_1:+62208958 None:intergenic
CTTTGTCCAAGAATTAGCAA+AGG 0.659003 4_1:-62213423 Msa0562390:CDS
GAGACTTTAGGCCAATGACT+CGG 0.661439 4_1:+62208997 None:intergenic
ACTTGTATTCAGATGAACGT+AGG 0.662826 4_1:-62210557 Msa0562390:intron
TTGTTCCTCAGAGACAACAA+AGG 0.667139 4_1:+62212922 None:intergenic
TAGAGAACCTGAATGTTTGG+GGG 0.673586 4_1:+62209739 None:intergenic
AAATGAAATGAAGATCACAA+AGG 0.678483 4_1:-62208172 Msa0562390:CDS
TAGTTGAAGATAATGTTGGA+CGG 0.683922 4_1:+62213354 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATTCTTTTATTATTAATAA+CGG + chr4_1:62208741-62208760 None:intergenic 10.0%
!! ATACATTTAATGTAATGTAA+TGG + chr4_1:62208227-62208246 None:intergenic 15.0%
!!! TATTTTAACAAAACAAACAA+GGG + chr4_1:62208616-62208635 None:intergenic 15.0%
!!! TTATTTTAACAAAACAAACA+AGG + chr4_1:62208617-62208636 None:intergenic 15.0%
!! ATTTAAATATAAGATGGTTA+AGG - chr4_1:62208880-62208899 Msa0562390:CDS 15.0%
!! TTTAAATATAAGATGGTTAA+GGG - chr4_1:62208881-62208900 Msa0562390:CDS 15.0%
!! ATTTAAATATAAGATGGTTA+AGG - chr4_1:62208880-62208899 Msa0562390:CDS 15.0%
!! TTTAAATATAAGATGGTTAA+GGG - chr4_1:62208881-62208900 Msa0562390:CDS 15.0%
!! CAACTTATATTTAAATACTA+CGG + chr4_1:62208959-62208978 None:intergenic 15.0%
!! AAAACATAAAAGTTTAACAT+AGG - chr4_1:62209926-62209945 Msa0562390:CDS 15.0%
!! AAACATAAAAGTTTAACATA+GGG - chr4_1:62209927-62209946 Msa0562390:CDS 15.0%
!!! TTTAAGTGTAACTTTTTTTT+AGG - chr4_1:62210085-62210104 Msa0562390:intron 15.0%
!!! TTAAGTGTAACTTTTTTTTA+GGG - chr4_1:62210086-62210105 Msa0562390:intron 15.0%
!! ATATGAAAATTAAACATGAA+TGG - chr4_1:62210158-62210177 Msa0562390:intron 15.0%
!!! ATTAATTTTGTCATAAAGAA+AGG + chr4_1:62210358-62210377 None:intergenic 15.0%
!! AAAAATGAAAATCCTATATT+GGG + chr4_1:62211149-62211168 None:intergenic 15.0%
!! AATAAAATACTACTATCATT+TGG + chr4_1:62211207-62211226 None:intergenic 15.0%
!! AATAATAAAATCATTTAAGC+TGG - chr4_1:62211314-62211333 Msa0562390:intron 15.0%
!!! TTTTACATATAAAAGTTGTA+GGG + chr4_1:62213334-62213353 None:intergenic 15.0%
!!! TTTTTACATATAAAAGTTGT+AGG + chr4_1:62213335-62213354 None:intergenic 15.0%
!! CAAAACATTCTAATTTGAAA+TGG - chr4_1:62208576-62208595 Msa0562390:intron 20.0%
!! TTTACTAATAAGATTCAACT+GGG - chr4_1:62208830-62208849 Msa0562390:intron 20.0%
!! TATATTTAAATACTACGCAT+AGG + chr4_1:62208871-62208890 None:intergenic 20.0%
!! CGTAGTATTTAAATATAAGA+TGG - chr4_1:62208874-62208893 Msa0562390:CDS 20.0%
!! CGTAGTATTTAAATATAAGA+TGG - chr4_1:62208874-62208893 Msa0562390:CDS 20.0%
!! TTAAATATAAGATGGTTAAG+GGG - chr4_1:62208882-62208901 Msa0562390:CDS 20.0%
!!! AAGTTAAAAAAGATGGATTT+TGG - chr4_1:62209406-62209425 Msa0562390:intron 20.0%
!! TAAGAATTGTATTAAAAGCA+GGG + chr4_1:62209735-62209754 None:intergenic 20.0%
!! TTAAGAATTGTATTAAAAGC+AGG + chr4_1:62209736-62209755 None:intergenic 20.0%
!!! AAATCAATAGTAGTTTGTAA+AGG + chr4_1:62210550-62210569 None:intergenic 20.0%
!!! GTTTTCACAATAATTAATAG+CGG + chr4_1:62210707-62210726 None:intergenic 20.0%
!!! TATTGTAGTGTATTTTGTTT+AGG - chr4_1:62211043-62211062 Msa0562390:intron 20.0%
!! ATATCTTAGATTCATTTATG+AGG - chr4_1:62211114-62211133 Msa0562390:intron 20.0%
!! GAAAAATGAAAATCCTATAT+TGG + chr4_1:62211150-62211169 None:intergenic 20.0%
!!! AAATTGTCATATCTTTAAGA+TGG + chr4_1:62211658-62211677 None:intergenic 20.0%
!!! AACCTACTAATTTTTTAGAT+AGG + chr4_1:62211951-62211970 None:intergenic 20.0%
!! GGATAATGATCAATAAATAA+TGG + chr4_1:62212088-62212107 None:intergenic 20.0%
!!! TTTCAGTTACTTCATTTTAA+TGG + chr4_1:62212874-62212893 None:intergenic 20.0%
!! TTAAAATGAAGTAACTGAAA+TGG - chr4_1:62212874-62212893 Msa0562390:CDS 20.0%
!!! AATTTTCAGATTATAACGAA+TGG - chr4_1:62212900-62212919 Msa0562390:CDS 20.0%
!! GTGTGTATAAAGTATCAAAT+AGG - chr4_1:62208169-62208188 Msa0562390:CDS 25.0%
! AATGTATAGCTGATTAATCA+TGG - chr4_1:62208240-62208259 Msa0562390:CDS 25.0%
!!! AGAATTTTTCAATCTTCCAA+TGG - chr4_1:62208305-62208324 Msa0562390:CDS 25.0%
!! AATTAGAATGTTTTGTAGCT+TGG + chr4_1:62208571-62208590 None:intergenic 25.0%
!! ATGTTGAAATTGAGTTTGTT+GGG - chr4_1:62208794-62208813 Msa0562390:intron 25.0%
! GTTTACTAATAAGATTCAAC+TGG - chr4_1:62208829-62208848 Msa0562390:intron 25.0%
! TTACTAATAAGATTCAACTG+GGG - chr4_1:62208831-62208850 Msa0562390:intron 25.0%
! AAATATATCAATTGTTCCAC+TGG - chr4_1:62209115-62209134 Msa0562390:intron 25.0%
! TGGAGGTAAATATCAAATTT+CGG - chr4_1:62209481-62209500 Msa0562390:intron 25.0%
!!! TGTGATTCAAGTTTTTATTG+TGG + chr4_1:62209573-62209592 None:intergenic 25.0%
! CAATAAAAACTTGAATCACA+AGG - chr4_1:62209573-62209592 Msa0562390:intron 25.0%
!!! TGTTTTTAAAAGTAGCATAG+TGG - chr4_1:62210595-62210614 Msa0562390:intron 25.0%
! TTATAGTACACTATTTGGTA+TGG + chr4_1:62210643-62210662 None:intergenic 25.0%
! TAAGGTTATAGTACACTATT+TGG + chr4_1:62210648-62210667 None:intergenic 25.0%
! TAACCTTATCAACAAATGAT+TGG - chr4_1:62210660-62210679 Msa0562390:intron 25.0%
! GTGAAAACTTTAGTACAATT+TGG - chr4_1:62210719-62210738 Msa0562390:intron 25.0%
!! ATGAATCTAAGATATACCAA+GGG + chr4_1:62211109-62211128 None:intergenic 25.0%
!! AATGAATCTAAGATATACCA+AGG + chr4_1:62211110-62211129 None:intergenic 25.0%
! AACATTGTTTGAACTTTCAA+TGG - chr4_1:62211389-62211408 Msa0562390:intron 25.0%
!! ATTTTGTGAAAGTTCAAGTA+TGG - chr4_1:62211686-62211705 Msa0562390:intron 25.0%
! ATCTTTATAGTTAGAGATCA+TGG - chr4_1:62211738-62211757 Msa0562390:intron 25.0%
! CACCTATCTAAAAAATTAGT+AGG - chr4_1:62211946-62211965 Msa0562390:intron 25.0%
! TCTTTATGTGTATCATGAAA+TGG + chr4_1:62211988-62212007 None:intergenic 25.0%
!! TAAATTTTGTGAAAACCACA+TGG + chr4_1:62212065-62212084 None:intergenic 25.0%
!! ATAACTGAGGTATTTAACAT+AGG - chr4_1:62212237-62212256 Msa0562390:intron 25.0%
! TAATATCAGAATGAGACTTT+AGG + chr4_1:62212323-62212342 None:intergenic 25.0%
! AAGTCTCATTCTGATATTAA+TGG - chr4_1:62212324-62212343 Msa0562390:intron 25.0%
! AAATAAAAAAGGATGGACAA+TGG - chr4_1:62212388-62212407 Msa0562390:intron 25.0%
!!! ATATTGATGATGAAAGCATT+AGG + chr4_1:62212432-62212451 None:intergenic 25.0%
! AATGCTTTCATCATCAATAT+TGG - chr4_1:62212432-62212451 Msa0562390:intron 25.0%
! TATTGACAGTTAAATTGCTT+TGG - chr4_1:62212622-62212641 Msa0562390:intron 25.0%
!! CATTTAGATATGATTTTCCA+CGG + chr4_1:62213118-62213137 None:intergenic 25.0%
! AAATGAAATGAAGATCACAA+AGG - chr4_1:62213133-62213152 Msa0562390:intron 25.0%
! AATGAAATGAAGATCACAAA+GGG - chr4_1:62213134-62213153 Msa0562390:intron 25.0%
! TCTTACAAGAACAGTTAATA+GGG - chr4_1:62213178-62213197 Msa0562390:intron 25.0%
! GATTCAGTAAAAAAAAAGAC+TGG - chr4_1:62213277-62213296 Msa0562390:CDS 25.0%
TTTGCTAATTCTTGGACAAA+GGG + chr4_1:62207883-62207902 None:intergenic 30.0%
TAGTTGAAGATAATGTTGGA+CGG + chr4_1:62207954-62207973 None:intergenic 30.0%
GTAGTAGTTGAAGATAATGT+TGG + chr4_1:62207958-62207977 None:intergenic 30.0%
!! AATTTGCTAAGGTCAATAAC+AGG + chr4_1:62208003-62208022 None:intergenic 30.0%
! ATCAGCTTTTTAATCTCATG+TGG - chr4_1:62208197-62208216 Msa0562390:CDS 30.0%
! TCAGCTTTTTAATCTCATGT+GGG - chr4_1:62208198-62208217 Msa0562390:CDS 30.0%
TTAGTGGAAAATGTGAAGAA+AGG - chr4_1:62208276-62208295 Msa0562390:CDS 30.0%
! AACTTCTTCTTTTCTTCCAT+TGG + chr4_1:62208324-62208343 None:intergenic 30.0%
ATGGAAGAAAAGAAGAAGTT+TGG - chr4_1:62208324-62208343 Msa0562390:CDS 30.0%
TGGAAGAAAAGAAGAAGTTT+GGG - chr4_1:62208325-62208344 Msa0562390:CDS 30.0%
TGAGGAACAAAAACTAGATT+GGG - chr4_1:62208396-62208415 Msa0562390:CDS 30.0%
GATGTTGAAATTGAGTTTGT+TGG - chr4_1:62208793-62208812 Msa0562390:intron 30.0%
!! AAATTGAGTTTGTTGGGTTT+GGG - chr4_1:62208800-62208819 Msa0562390:intron 30.0%
!! ATCAGTTGACTTTTGAACTA+TGG - chr4_1:62209064-62209083 Msa0562390:intron 30.0%
AAAAACTCTCTTATCTCCAT+GGG + chr4_1:62209249-62209268 None:intergenic 30.0%
AAAAAACTCTCTTATCTCCA+TGG + chr4_1:62209250-62209269 None:intergenic 30.0%
!!! ATGGAGATAAGAGAGTTTTT+TGG - chr4_1:62209249-62209268 Msa0562390:intron 30.0%
! GGTCTTCAAGTTAAAAAAGA+TGG - chr4_1:62209399-62209418 Msa0562390:intron 30.0%
!! GGTTGATAATGAAAGCATTA+GGG + chr4_1:62209449-62209468 None:intergenic 30.0%
!! AGGTTGATAATGAAAGCATT+AGG + chr4_1:62209450-62209469 None:intergenic 30.0%
AATGCTTTCATTATCAACCT+TGG - chr4_1:62209450-62209469 Msa0562390:intron 30.0%
! CAAGTTTTTATTGTGGTCAA+TGG + chr4_1:62209566-62209585 None:intergenic 30.0%
! AATCATTCCTTGATAGCATA+AGG - chr4_1:62209857-62209876 Msa0562390:CDS 30.0%
! GTTTTGTACACAATAAGTTG+AGG - chr4_1:62210002-62210021 Msa0562390:intron 30.0%
ATTGTAAGACTGTGTTTCTT+AGG - chr4_1:62210049-62210068 Msa0562390:intron 30.0%
!! TAGCTTATTCTTTTTCACGT+TGG - chr4_1:62210275-62210294 Msa0562390:intron 30.0%
!! AGCTTATTCTTTTTCACGTT+GGG - chr4_1:62210276-62210295 Msa0562390:intron 30.0%
!!! CTGAAACGTGAGTTTTTTTA+TGG - chr4_1:62210305-62210324 Msa0562390:intron 30.0%
CCTTCTACATATAGTTCAAA+GGG + chr4_1:62210429-62210448 None:intergenic 30.0%
ACCTTCTACATATAGTTCAA+AGG + chr4_1:62210430-62210449 None:intergenic 30.0%
! TAAAAGTAGCATAGTGGAAT+TGG - chr4_1:62210601-62210620 Msa0562390:intron 30.0%
! CAACCAATCATTTGTTGATA+AGG + chr4_1:62210666-62210685 None:intergenic 30.0%
CTTATCAACAAATGATTGGT+TGG - chr4_1:62210664-62210683 Msa0562390:intron 30.0%
! ATAATTAATAGCGGAAGGAA+TGG + chr4_1:62210698-62210717 None:intergenic 30.0%
! TCACAATAATTAATAGCGGA+AGG + chr4_1:62210703-62210722 None:intergenic 30.0%
GATGGATATAAGATCTATTC+TGG - chr4_1:62210770-62210789 Msa0562390:intron 30.0%
AAGATCTTGAGACAACAATT+TGG + chr4_1:62210928-62210947 None:intergenic 30.0%
AATACTACTATCATTTGGTC+CGG + chr4_1:62211202-62211221 None:intergenic 30.0%
TCATTTAAGCTGGTTAATCA+TGG - chr4_1:62211324-62211343 Msa0562390:intron 30.0%
! TCTCTTCATATTTTCCACTA+AGG + chr4_1:62211361-62211380 None:intergenic 30.0%
TTAGTGGAAAATATGAAGAG+AGG - chr4_1:62211360-62211379 Msa0562390:intron 30.0%
CTGTTCTTCAGATAAAATGA+AGG + chr4_1:62211469-62211488 None:intergenic 30.0%
TGAAGAACAGAAACTAGAAT+GGG - chr4_1:62211479-62211498 Msa0562390:CDS 30.0%
ATTCTCTCTGCATTTGAATA+AGG + chr4_1:62212130-62212149 None:intergenic 30.0%
AGAGATATATTCTACAGAGT+TGG - chr4_1:62212152-62212171 Msa0562390:intron 30.0%
! AATACCTCAGTTATTTCCTT+GGG + chr4_1:62212231-62212250 None:intergenic 30.0%
! AAATACCTCAGTTATTTCCT+TGG + chr4_1:62212232-62212251 None:intergenic 30.0%
AGGATAATAATTCACCCTTA+TGG + chr4_1:62212271-62212290 None:intergenic 30.0%
AGAAGGCCTTCAAATAAAAA+AGG - chr4_1:62212377-62212396 Msa0562390:intron 30.0%
!!! GTCCATCCTTTTTTATTTGA+AGG + chr4_1:62212386-62212405 None:intergenic 30.0%
! CAATATTGGTGACATATTAG+AGG - chr4_1:62212446-62212465 Msa0562390:intron 30.0%
TAGTTTAGTTGCTATAGTGA+TGG - chr4_1:62212831-62212850 Msa0562390:CDS 30.0%
TAGTTAATTCAGAGAAAGAG+AGG - chr4_1:62212952-62212971 Msa0562390:CDS 30.0%
CTCTTACAAGAACAGTTAAT+AGG - chr4_1:62213177-62213196 Msa0562390:intron 30.0%
TCAACTGAATATGGAAAAGA+AGG + chr4_1:62213391-62213410 None:intergenic 30.0%
ATTGGAGTAGAAATTTCTTC+TGG + chr4_1:62213415-62213434 None:intergenic 30.0%
TTGTAACTTGATAGACTATG+AGG + chr4_1:62213442-62213461 None:intergenic 30.0%
CTTTGCTAATTCTTGGACAA+AGG + chr4_1:62207884-62207903 None:intergenic 35.0%
CTTTGTCCAAGAATTAGCAA+AGG - chr4_1:62207882-62207901 Msa0562390:three_prime_UTR 35.0%
ATAACAGGAAGTTGAGGTAA+AGG + chr4_1:62207988-62208007 None:intergenic 35.0%
!! GGGATGATAACAATTTGCTA+AGG + chr4_1:62208014-62208033 None:intergenic 35.0%
TACACTATGCTTGTAAAGAG+TGG - chr4_1:62208064-62208083 Msa0562390:three_prime_UTR 35.0%
ACACTATGCTTGTAAAGAGT+GGG - chr4_1:62208065-62208084 Msa0562390:three_prime_UTR 35.0%
CTGAGGAACAAAAACTAGAT+TGG - chr4_1:62208395-62208414 Msa0562390:CDS 35.0%
AAGATAGAACCTGAATGGTA+GGG + chr4_1:62208488-62208507 None:intergenic 35.0%
GAAAGAAGATAGAACCTGAA+TGG + chr4_1:62208493-62208512 None:intergenic 35.0%
TTGGAGTGGCATATCATTAA+TGG + chr4_1:62208544-62208563 None:intergenic 35.0%
! TGTTTTGTAGCTTGGAAGTT+TGG + chr4_1:62208563-62208582 None:intergenic 35.0%
ATCATTGAGCTAACATCTCA+TGG + chr4_1:62208650-62208669 None:intergenic 35.0%
GACTTTCTAACCTCAAGATA+CGG - chr4_1:62208678-62208697 Msa0562390:intron 35.0%
!! GAAATTGAGTTTGTTGGGTT+TGG - chr4_1:62208799-62208818 Msa0562390:intron 35.0%
TAAATACTACGCATAGGCTT+CGG + chr4_1:62208865-62208884 None:intergenic 35.0%
TAAGGGGTAATCTTGTAAGT+TGG - chr4_1:62208932-62208951 Msa0562390:CDS 35.0%
CCTTTAGATTATTCACGCAT+AGG + chr4_1:62208993-62209012 None:intergenic 35.0%
CCTATGCGTGAATAATCTAA+AGG - chr4_1:62208990-62209009 Msa0562390:CDS 35.0%
AATGATATCATGTCATCCAG+TGG + chr4_1:62209134-62209153 None:intergenic 35.0%
CTGGATGACATGATATCATT+TGG - chr4_1:62209134-62209153 Msa0562390:intron 35.0%
CATCAAGAGAATATGCCATA+AGG + chr4_1:62209221-62209240 None:intergenic 35.0%
! TCCTATAGCAAATTCTGGTT+GGG + chr4_1:62209319-62209338 None:intergenic 35.0%
TTGAGTCCTATAGCAAATTC+TGG + chr4_1:62209324-62209343 None:intergenic 35.0%
!! ATAATGAAAGCATTAGGGAG+GGG + chr4_1:62209444-62209463 None:intergenic 35.0%
!! GATAATGAAAGCATTAGGGA+GGG + chr4_1:62209445-62209464 None:intergenic 35.0%
!! TGATAATGAAAGCATTAGGG+AGG + chr4_1:62209446-62209465 None:intergenic 35.0%
! GTTTTGCAGATGATGACAAA+TGG - chr4_1:62209627-62209646 Msa0562390:intron 35.0%
TTAAACACTGCAGGTGTATT+TGG + chr4_1:62209781-62209800 None:intergenic 35.0%
CTAATTCTCTTAAACACTGC+AGG + chr4_1:62209790-62209809 None:intergenic 35.0%
GTGTTTAAGAGAATTAGTCC+AGG - chr4_1:62209793-62209812 Msa0562390:CDS 35.0%
!! TATCCTTTGAAGTATTCTCC+TGG + chr4_1:62209814-62209833 None:intergenic 35.0%
AACATGAATGGAAGACAAAC+CGG - chr4_1:62210170-62210189 Msa0562390:intron 35.0%
!! TTATTCTTTTTCACGTTGGG+AGG - chr4_1:62210279-62210298 Msa0562390:intron 35.0%
!! TATTCTTTTTCACGTTGGGA+GGG - chr4_1:62210280-62210299 Msa0562390:intron 35.0%
AGAAAGGCTTAATGTGTGTT+TGG + chr4_1:62210342-62210361 None:intergenic 35.0%
CAATGAATGTTGTGTTTACG+AGG + chr4_1:62210381-62210400 None:intergenic 35.0%
CCCTTTGAACTATATGTAGA+AGG - chr4_1:62210426-62210445 Msa0562390:CDS 35.0%
! TTTTTGCTTCCTAACACAAG+AGG + chr4_1:62210459-62210478 None:intergenic 35.0%
! AGAACACATTTTCTCATGCT+TGG - chr4_1:62210517-62210536 Msa0562390:CDS 35.0%
! ATAGTGGAATTGGACATGTA+TGG - chr4_1:62210611-62210630 Msa0562390:intron 35.0%
TACACTATTTGGTATGGTAC+CGG + chr4_1:62210637-62210656 None:intergenic 35.0%
ACTTGTATTCAGATGAACGT+AGG - chr4_1:62210748-62210767 Msa0562390:intron 35.0%
TCTCAAGATCTTAACCTCAA+GGG - chr4_1:62210936-62210955 Msa0562390:intron 35.0%
TGAAAATCCTATATTGGGAG+AGG + chr4_1:62211144-62211163 None:intergenic 35.0%
TGGAAGAAAAGAAGAAGCTA+TGG - chr4_1:62211409-62211428 Msa0562390:intron 35.0%
CTGAAGAACAGAAACTAGAA+TGG - chr4_1:62211478-62211497 Msa0562390:CDS 35.0%
! GGGATTTGGTTGAATATATG+GGG + chr4_1:62211549-62211568 None:intergenic 35.0%
! GGGGATTTGGTTGAATATAT+GGG + chr4_1:62211550-62211569 None:intergenic 35.0%
ATAGAGAACCTGAATGTTTG+GGG + chr4_1:62211570-62211589 None:intergenic 35.0%
GATAGAGAACCTGAATGTTT+GGG + chr4_1:62211571-62211590 None:intergenic 35.0%
AGATAGAGAACCTGAATGTT+TGG + chr4_1:62211572-62211591 None:intergenic 35.0%
ATTCTCTCTAATCTTGCATG+AGG + chr4_1:62211838-62211857 None:intergenic 35.0%
!! TAGATAGGTGTTGAGTCATA+TGG + chr4_1:62211936-62211955 None:intergenic 35.0%
AAATTGTCTGAAAGTTGAGG+AGG + chr4_1:62212041-62212060 None:intergenic 35.0%
GGAAAATTGTCTGAAAGTTG+AGG + chr4_1:62212044-62212063 None:intergenic 35.0%
! CTTTCAGACAATTTTCCATG+TGG - chr4_1:62212047-62212066 Msa0562390:intron 35.0%
GGCTGATAATATGACTTACA+CGG + chr4_1:62212109-62212128 None:intergenic 35.0%
! CATAAGTTCGAGCATTTTGA+TGG + chr4_1:62212187-62212206 None:intergenic 35.0%
CATCAAAATGCTCGAACTTA+TGG - chr4_1:62212185-62212204 Msa0562390:intron 35.0%
AAATCCCAAGGAAATAACTG+AGG - chr4_1:62212224-62212243 Msa0562390:intron 35.0%
!! CTATATCGCTGATTTGAAGA+AGG + chr4_1:62212359-62212378 None:intergenic 35.0%
CTTCAAATCAGCGATATAGA+AGG - chr4_1:62212360-62212379 Msa0562390:intron 35.0%
GGCCTTCAAATAAAAAAGGA+TGG - chr4_1:62212381-62212400 Msa0562390:intron 35.0%
!! ATGATGAAAGCATTAGGCAT+GGG + chr4_1:62212426-62212445 None:intergenic 35.0%
AATTCAAATGACCGAAGCTA+TGG + chr4_1:62212796-62212815 None:intergenic 35.0%
TAACATTGCTTGCATGTTAG+GGG + chr4_1:62213000-62213019 None:intergenic 35.0%
CTAACATTGCTTGCATGTTA+GGG + chr4_1:62213001-62213020 None:intergenic 35.0%
CTTTCTTGAGTAACAAGACT+TGG + chr4_1:62213032-62213051 None:intergenic 35.0%
CTAATTCTTCTATACTGTGC+TGG + chr4_1:62213056-62213075 None:intergenic 35.0%
AGTGTTGTAGATCACTTCAA+TGG - chr4_1:62213074-62213093 Msa0562390:intron 35.0%
CAGTTAATAGGGAATTGAGA+TGG - chr4_1:62213189-62213208 Msa0562390:intron 35.0%
ACTGAATATGGAAAAGAAGG+AGG + chr4_1:62213388-62213407 None:intergenic 35.0%
GATAGACTATGAGGCATAAT+TGG + chr4_1:62213433-62213452 None:intergenic 35.0%
TGTCCAAGAATTAGCAAAGG+AGG - chr4_1:62207885-62207904 Msa0562390:three_prime_UTR 40.0%
ATGCCTCCTTTGCTAATTCT+TGG + chr4_1:62207891-62207910 None:intergenic 40.0%
! AACATAGCGATCTGGAACTT+TGG + chr4_1:62207917-62207936 None:intergenic 40.0%
AGGTCAATAACAGGAAGTTG+AGG + chr4_1:62207994-62208013 None:intergenic 40.0%
CTCAGGTTCATTGAGATCAT+GGG + chr4_1:62208034-62208053 None:intergenic 40.0%
TAGTGTAGTTTCTTCAGCTC+AGG + chr4_1:62208051-62208070 None:intergenic 40.0%
CACTATGCTTGTAAAGAGTG+GGG - chr4_1:62208066-62208085 Msa0562390:three_prime_UTR 40.0%
TAAAGAGTGGGGTTTCTTTC+AGG - chr4_1:62208077-62208096 Msa0562390:three_prime_UTR 40.0%
AGAAGTTTGGGCAAACAGAA+AGG - chr4_1:62208337-62208356 Msa0562390:CDS 40.0%
GAAGTTTGGGCAAACAGAAA+GGG - chr4_1:62208338-62208357 Msa0562390:CDS 40.0%
AAGTTTGGGCAAACAGAAAG+GGG - chr4_1:62208339-62208358 Msa0562390:CDS 40.0%
TTGTTCCTCAGAGACAACAA+AGG + chr4_1:62208386-62208405 None:intergenic 40.0%
! AAGTGAGGTTTCCTTTTGTG+GGG + chr4_1:62208451-62208470 None:intergenic 40.0%
! CAAGTGAGGTTTCCTTTTGT+GGG + chr4_1:62208452-62208471 None:intergenic 40.0%
! ACAAGTGAGGTTTCCTTTTG+TGG + chr4_1:62208453-62208472 None:intergenic 40.0%
GGTATGTTGGAAAACAAGTG+AGG + chr4_1:62208466-62208485 None:intergenic 40.0%
AGATAGAACCTGAATGGTAG+GGG + chr4_1:62208487-62208506 None:intergenic 40.0%
GAAGATAGAACCTGAATGGT+AGG + chr4_1:62208489-62208508 None:intergenic 40.0%
GATTTGAACTCCGTATCTTG+AGG + chr4_1:62208691-62208710 None:intergenic 40.0%
! ATTTTACAACTGTCCCGTGT+GGG + chr4_1:62208713-62208732 None:intergenic 40.0%
AATAAGATTCAACTGGGGTG+CGG - chr4_1:62208836-62208855 Msa0562390:intron 40.0%
AGAACATGCAATCCAGATCA+TGG - chr4_1:62209194-62209213 Msa0562390:intron 40.0%
AATCCAGATCATGGACCTTA+TGG - chr4_1:62209203-62209222 Msa0562390:intron 40.0%
TTCTCTTGATGTAGATCCCA+TGG - chr4_1:62209230-62209249 Msa0562390:intron 40.0%
! CCTATAGCAAATTCTGGTTG+GGG + chr4_1:62209318-62209337 None:intergenic 40.0%
GTCCTATAGCAAATTCTGGT+TGG + chr4_1:62209320-62209339 None:intergenic 40.0%
GGACTCAATTCTCATTCTGA+TGG - chr4_1:62209336-62209355 Msa0562390:intron 40.0%
CTCAATTCTCATTCTGATGG+TGG - chr4_1:62209339-62209358 Msa0562390:intron 40.0%
!! AATTCTCATTCTGATGGTGG+TGG - chr4_1:62209342-62209361 Msa0562390:intron 40.0%
TTCATTGCCTTGGAGAAGTA+TGG + chr4_1:62209373-62209392 None:intergenic 40.0%
ACTTCTCCAAGGCAATGAAA+CGG - chr4_1:62209374-62209393 Msa0562390:intron 40.0%
TATCAACCTTGGAGACATGT+TGG - chr4_1:62209461-62209480 Msa0562390:intron 40.0%
TCTCTGAGTTAACTGTTGCT+CGG + chr4_1:62209681-62209700 None:intergenic 40.0%
AGCAACAGTTAACTCAGAGA+AGG - chr4_1:62209681-62209700 Msa0562390:intron 40.0%
! GTATTTGGAGTTACAAGGCT+TGG + chr4_1:62209766-62209785 None:intergenic 40.0%
! CAGGTGTATTTGGAGTTACA+AGG + chr4_1:62209771-62209790 None:intergenic 40.0%
AGTCCAGGAGAATACTTCAA+AGG - chr4_1:62209808-62209827 Msa0562390:CDS 40.0%
CCTGAATCCTTATGCTATCA+AGG + chr4_1:62209867-62209886 None:intergenic 40.0%
! CCTTGATAGCATAAGGATTC+AGG - chr4_1:62209864-62209883 Msa0562390:CDS 40.0%
CGTCAATTGTAAAGTTCCGA+GGG + chr4_1:62209906-62209925 None:intergenic 40.0%
TCGTCAATTGTAAAGTTCCG+AGG + chr4_1:62209907-62209926 None:intergenic 40.0%
!! GGTTTGTTAGAAGTCACACT+TGG - chr4_1:62210107-62210126 Msa0562390:intron 40.0%
!! ATTCTTTTTCACGTTGGGAG+GGG - chr4_1:62210281-62210300 Msa0562390:intron 40.0%
GTATTCAGATGAACGTAGGA+TGG - chr4_1:62210752-62210771 Msa0562390:intron 40.0%
! TTCCTTTGCTAGCTCTTGAA+CGG + chr4_1:62210802-62210821 None:intergenic 40.0%
!! AACATATCGCTCTGGAACAT+TGG + chr4_1:62210832-62210851 None:intergenic 40.0%
AGTACTACAGAGTCTTGATC+TGG + chr4_1:62210858-62210877 None:intergenic 40.0%
CTTGAGGTAAAGAAGAGGTA+GGG + chr4_1:62210887-62210906 None:intergenic 40.0%
ACTTGAGGTAAAGAAGAGGT+AGG + chr4_1:62210888-62210907 None:intergenic 40.0%
AGGAACTTGAGGTAAAGAAG+AGG + chr4_1:62210892-62210911 None:intergenic 40.0%
AATTTGGCAAGATCGATGAC+AGG + chr4_1:62210912-62210931 None:intergenic 40.0%
GTCTCAAGATCTTAACCTCA+AGG - chr4_1:62210935-62210954 Msa0562390:intron 40.0%
AAAGAAACCCCATTCTTTGC+AGG + chr4_1:62210988-62211007 None:intergenic 40.0%
CAAAGAATGGGGTTTCTTTC+AGG - chr4_1:62210989-62211008 Msa0562390:intron 40.0%
GTAAACCATAACATCATCCG+CGG - chr4_1:62211065-62211084 Msa0562390:intron 40.0%
TGGAGTAAGTTCTTCCTTAG+TGG - chr4_1:62211344-62211363 Msa0562390:intron 40.0%
AAGAAGCTATGGCAGAAAGA+AGG - chr4_1:62211420-62211439 Msa0562390:intron 40.0%
AAACACTACCTTCTCACTCA+AGG - chr4_1:62211520-62211539 Msa0562390:CDS 40.0%
! GGGGGATTTGGTTGAATATA+TGG + chr4_1:62211551-62211570 None:intergenic 40.0%
TAGAGAACCTGAATGTTTGG+GGG + chr4_1:62211569-62211588 None:intergenic 40.0%
TGCTCTTGCAATAAATCCCA+AGG - chr4_1:62212212-62212231 Msa0562390:intron 40.0%
ACATAGGAACTCAAGCCATA+AGG - chr4_1:62212253-62212272 Msa0562390:intron 40.0%
CATAGGAACTCAAGCCATAA+GGG - chr4_1:62212254-62212273 Msa0562390:intron 40.0%
TGATTTGAAGAAGGATGGTG+AGG + chr4_1:62212350-62212369 None:intergenic 40.0%
!! ATCGCTGATTTGAAGAAGGA+TGG + chr4_1:62212355-62212374 None:intergenic 40.0%
GCATTAGGCATGGGTTTAAT+AGG + chr4_1:62212417-62212436 None:intergenic 40.0%
!! GATGATGAAAGCATTAGGCA+TGG + chr4_1:62212427-62212446 None:intergenic 40.0%
CAAACACACAACGACACAAA+AGG + chr4_1:62212493-62212512 None:intergenic 40.0%
GAAAAGGAGTTGAAGGTCAT+GGG + chr4_1:62212740-62212759 None:intergenic 40.0%
GCTAACATTGCTTGCATGTT+AGG + chr4_1:62213002-62213021 None:intergenic 40.0%
GAAATGAAGATCACAAAGGG+TGG - chr4_1:62213137-62213156 Msa0562390:intron 40.0%
!! TCTTCTGGCTCAACTGAATA+TGG + chr4_1:62213400-62213419 None:intergenic 40.0%
! AATTCTTGGACAAAGGGCAC+TGG + chr4_1:62207877-62207896 None:intergenic 45.0%
AATGTTGGACGGTCATGATG+TGG + chr4_1:62207943-62207962 None:intergenic 45.0%
GCTCAGGTTCATTGAGATCA+TGG + chr4_1:62208035-62208054 None:intergenic 45.0%
TGGAGTGAGCGAATCATTAG+TGG - chr4_1:62208260-62208279 Msa0562390:CDS 45.0%
AAACAGAAAGGGGATGTGGA+GGG - chr4_1:62208349-62208368 Msa0562390:CDS 45.0%
TGTAGCTTGGAAGTTTGGAG+TGG + chr4_1:62208558-62208577 None:intergenic 45.0%
TACGGAGTTCAAATCCCACA+CGG - chr4_1:62208696-62208715 Msa0562390:intron 45.0%
! CATTTTACAACTGTCCCGTG+TGG + chr4_1:62208714-62208733 None:intergenic 45.0%
ATAAGATTCAACTGGGGTGC+GGG - chr4_1:62208837-62208856 Msa0562390:intron 45.0%
ACACACATCTGACTGCATGA+TGG + chr4_1:62209024-62209043 None:intergenic 45.0%
ATGCCATAAGGTCCATGATC+TGG + chr4_1:62209209-62209228 None:intergenic 45.0%
GTCAAGCAACTCAATCGACA+AGG - chr4_1:62209271-62209290 Msa0562390:intron 45.0%
!! CCCCAACCAGAATTTGCTAT+AGG - chr4_1:62209315-62209334 Msa0562390:intron 45.0%
TTACCTCCAACATGTCTCCA+AGG + chr4_1:62209470-62209489 None:intergenic 45.0%
CAGTTAACTCAGAGAAGGAG+AGG - chr4_1:62209686-62209705 Msa0562390:intron 45.0%
AAAAGCAGGGCTGTAGAATG+AGG + chr4_1:62209722-62209741 None:intergenic 45.0%
TACCTTGCACAAGAACTCTG+TGG - chr4_1:62209832-62209851 Msa0562390:CDS 45.0%
ACCTTGCACAAGAACTCTGT+GGG - chr4_1:62209833-62209852 Msa0562390:CDS 45.0%
TAAGTACCTGTTTGGACCCA+CGG - chr4_1:62210209-62210228 Msa0562390:intron 45.0%
!! TTCTTTTTCACGTTGGGAGG+GGG - chr4_1:62210282-62210301 Msa0562390:intron 45.0%
GGTCAACAACCTCTTGTGTT+AGG - chr4_1:62210447-62210466 Msa0562390:CDS 45.0%
TGGAATTGGACATGTATGGC+CGG - chr4_1:62210615-62210634 Msa0562390:intron 45.0%
! TTTGCTAGCTCTTGAACGGA+GGG + chr4_1:62210798-62210817 None:intergenic 45.0%
TCTGGAAGAACATATCGCTC+TGG + chr4_1:62210840-62210859 None:intergenic 45.0%
AGATCGATGACAGGAACTTG+AGG + chr4_1:62210903-62210922 None:intergenic 45.0%
TACACTCTGCCTGCAAAGAA+TGG - chr4_1:62210976-62210995 Msa0562390:intron 45.0%
ACACTCTGCCTGCAAAGAAT+GGG - chr4_1:62210977-62210996 Msa0562390:intron 45.0%
ATTGTCCGCGGATGATGTTA+TGG + chr4_1:62211073-62211092 None:intergenic 45.0%
AATTGCGGAGACTAATCCCT+TGG - chr4_1:62211090-62211109 Msa0562390:intron 45.0%
AGGCTTACCTCTCCCAATAT+AGG - chr4_1:62211134-62211153 Msa0562390:intron 45.0%
ATGGCAGAAAGAAGGAGACT+TGG - chr4_1:62211428-62211447 Msa0562390:intron 45.0%
CAGAAAGAAGGAGACTTGGA+GGG - chr4_1:62211432-62211451 Msa0562390:intron 45.0%
ACCAAATCCCCCAAACATTC+AGG - chr4_1:62211559-62211578 Msa0562390:CDS 45.0%
ACCTGAATGTTTGGGGGATT+TGG + chr4_1:62211563-62211582 None:intergenic 45.0%
TGCTCACACTAGTTGTGACT+TGG + chr4_1:62211903-62211922 None:intergenic 45.0%
GAGACTTTAGGCCAATGACT+CGG + chr4_1:62212311-62212330 None:intergenic 45.0%
GGAAAAGGAGTTGAAGGTCA+TGG + chr4_1:62212741-62212760 None:intergenic 45.0%
GCTAAGGGAAAAGGAGTTGA+AGG + chr4_1:62212747-62212766 None:intergenic 45.0%
! CTGGTTTGAGCTAAGGGAAA+AGG + chr4_1:62212756-62212775 None:intergenic 45.0%
! GCTCATCTGGTTTGAGCTAA+GGG + chr4_1:62212762-62212781 None:intergenic 45.0%
! AGCTCATCTGGTTTGAGCTA+AGG + chr4_1:62212763-62212782 None:intergenic 45.0%
CAAATGACCGAAGCTATGGA+GGG + chr4_1:62212792-62212811 None:intergenic 45.0%
TCAAATGACCGAAGCTATGG+AGG + chr4_1:62212793-62212812 None:intergenic 45.0%
TTGCTCGATGCTCAATGCTT+GGG + chr4_1:62212932-62212951 None:intergenic 45.0%
ATTGCTCGATGCTCAATGCT+TGG + chr4_1:62212933-62212952 None:intergenic 45.0%
! AGGGGCATAAAAAGCAGCTA+GGG + chr4_1:62212982-62213001 None:intergenic 45.0%
! TAGGGGCATAAAAAGCAGCT+AGG + chr4_1:62212983-62213002 None:intergenic 45.0%
!! TGAGTAACAAGACTTGGTGC+TGG + chr4_1:62213026-62213045 None:intergenic 45.0%
! TACTTTTCACAAGAGCTCCG+TGG - chr4_1:62213098-62213117 Msa0562390:intron 45.0%
!!! TGATTTTATTTATTATATTT+TGG - chr4_1:62211713-62211732 Msa0562390:intron 5.0%
!! TATAATAAAAGTTTAAATTA+AGG - chr4_1:62211804-62211823 Msa0562390:intron 5.0%
TGTGGACGAACATAGCGATC+TGG + chr4_1:62207925-62207944 None:intergenic 50.0%
CAAACAGAAAGGGGATGTGG+AGG - chr4_1:62208348-62208367 Msa0562390:CDS 50.0%
AAAGGGGATGTGGAGGGATA+TGG - chr4_1:62208355-62208374 Msa0562390:CDS 50.0%
! TCAGGCCTTTGTTGTCTCTG+AGG - chr4_1:62208378-62208397 Msa0562390:CDS 50.0%
TCACTTTGCCACCCCACAAA+AGG - chr4_1:62208437-62208456 Msa0562390:intron 50.0%
! TGAGGTTTCCTTTTGTGGGG+TGG + chr4_1:62208448-62208467 None:intergenic 50.0%
! CCTGAATGGTAGGGGTATGT+TGG + chr4_1:62208479-62208498 None:intergenic 50.0%
CCAACATACCCCTACCATTC+AGG - chr4_1:62208476-62208495 Msa0562390:intron 50.0%
ACGGAGTTCAAATCCCACAC+GGG - chr4_1:62208697-62208716 Msa0562390:intron 50.0%
TAAGATTCAACTGGGGTGCG+GGG - chr4_1:62208838-62208857 Msa0562390:intron 50.0%
CACATCTGACTGCATGATGG+CGG + chr4_1:62209021-62209040 None:intergenic 50.0%
! AATTCTGGTTGGGGACATGG+TGG + chr4_1:62209309-62209328 None:intergenic 50.0%
! GCAAATTCTGGTTGGGGACA+TGG + chr4_1:62209312-62209331 None:intergenic 50.0%
! TGCCTTGGAGAAGTATGGTG+AGG + chr4_1:62209368-62209387 None:intergenic 50.0%
CTCCAAGGCAATGAAACGGA+TGG - chr4_1:62209378-62209397 Msa0562390:intron 50.0%
GACCATCCGTTTCATTGCCT+TGG + chr4_1:62209383-62209402 None:intergenic 50.0%
GCATTAGGGAGGGGTTTAAC+AGG + chr4_1:62209435-62209454 None:intergenic 50.0%
CAACCTTGGAGACATGTTGG+AGG - chr4_1:62209464-62209483 Msa0562390:intron 50.0%
CAAGGACTGTGCTTTGACTG+TGG - chr4_1:62209591-62209610 Msa0562390:intron 50.0%
AGGGCTGTAGAATGAGGCTA+TGG + chr4_1:62209716-62209735 None:intergenic 50.0%
TCCCACAGAGTTCTTGTGCA+AGG + chr4_1:62209837-62209856 None:intergenic 50.0%
CTGAAAACGATCAACGCCCT+CGG - chr4_1:62209887-62209906 Msa0562390:CDS 50.0%
! TTAGCGGCTCAGTTTTTCGC+CGG + chr4_1:62210192-62210211 None:intergenic 50.0%
TGAGCCGCTAAGTACCTGTT+TGG - chr4_1:62210201-62210220 Msa0562390:intron 50.0%
GGGTCCAAACAGGTACTTAG+CGG + chr4_1:62210208-62210227 None:intergenic 50.0%
! CTTTGCTAGCTCTTGAACGG+AGG + chr4_1:62210799-62210818 None:intergenic 50.0%
CTCCGTTCAAGAGCTAGCAA+AGG - chr4_1:62210797-62210816 Msa0562390:intron 50.0%
TCTCAAGCTCATGTCCCTTG+AGG + chr4_1:62210953-62210972 None:intergenic 50.0%
CACTCTGCCTGCAAAGAATG+GGG - chr4_1:62210978-62210997 Msa0562390:intron 50.0%
ACATCATCCGCGGACAATTG+CGG - chr4_1:62211075-62211094 Msa0562390:intron 50.0%
TTAGTCTCCGCAATTGTCCG+CGG + chr4_1:62211085-62211104 None:intergenic 50.0%
TCTCTGGCTGCTAGTGTGTA+TGG + chr4_1:62211172-62211191 None:intergenic 50.0%
GCAGAAAGAAGGAGACTTGG+AGG - chr4_1:62211431-62211450 Msa0562390:intron 50.0%
GAAGGAGACTTGGAGGGATT+TGG - chr4_1:62211438-62211457 Msa0562390:intron 50.0%
! AGACTTGGAGGGATTTGGTC+AGG - chr4_1:62211443-62211462 Msa0562390:intron 50.0%
TGGGGATTCCTTGAGTGAGA+AGG + chr4_1:62211531-62211550 None:intergenic 50.0%
!! TTTAGGCCAATGACTCGGTC+TGG + chr4_1:62212306-62212325 None:intergenic 50.0%
TGTCCATCCCTCCATAGCTT+CGG - chr4_1:62212782-62212801 Msa0562390:intron 50.0%
GGGCAAACAGAAAGGGGATG+TGG - chr4_1:62208345-62208364 Msa0562390:CDS 55.0%
GGATGTGGAGGGATATGGTC+AGG - chr4_1:62208360-62208379 Msa0562390:CDS 55.0%
AAGATTCAACTGGGGTGCGG+GGG - chr4_1:62208839-62208858 Msa0562390:intron 55.0%
GGCCTCACCATACTTCTCCA+AGG - chr4_1:62209363-62209382 Msa0562390:intron 55.0%
!! GGAGTTACAAGGCTTGGTGC+TGG + chr4_1:62209760-62209779 None:intergenic 55.0%
TACCTGTTTGGACCCACGGT+AGG - chr4_1:62210213-62210232 Msa0562390:intron 55.0%
TTTGGACCCACGGTAGGAGA+GGG - chr4_1:62210219-62210238 Msa0562390:intron 55.0%
GTTTGACCCTCTCCTACCGT+GGG + chr4_1:62210228-62210247 None:intergenic 55.0%
TGTTTGACCCTCTCCTACCG+TGG + chr4_1:62210229-62210248 None:intergenic 55.0%
AGCAGCCAGAGAACGAACTC+CGG - chr4_1:62211180-62211199 Msa0562390:intron 55.0%
TTGGTCCGGAGTTCGTTCTC+TGG + chr4_1:62211188-62211207 None:intergenic 55.0%
!! CAATGACTCGGTCTGGTTGG+GGG + chr4_1:62212299-62212318 None:intergenic 55.0%
!! CCAATGACTCGGTCTGGTTG+GGG + chr4_1:62212300-62212319 None:intergenic 55.0%
!! GCCAATGACTCGGTCTGGTT+GGG + chr4_1:62212301-62212320 None:intergenic 55.0%
TGACCGAAGCTATGGAGGGA+TGG + chr4_1:62212788-62212807 None:intergenic 55.0%
CTCCTACCGTGGGTCCAAAC+AGG + chr4_1:62210218-62210237 None:intergenic 60.0%
GTTTGGACCCACGGTAGGAG+AGG - chr4_1:62210218-62210237 Msa0562390:intron 60.0%
CCCCAACCAGACCGAGTCAT+TGG - chr4_1:62212297-62212316 Msa0562390:intron 60.0%
!! GGCCAATGACTCGGTCTGGT+TGG + chr4_1:62212302-62212321 None:intergenic 60.0%
GGAGGGATGGACAGCTCATC+TGG + chr4_1:62212775-62212794 None:intergenic 60.0%
ACTCGGTCTGGTTGGGGGCA+TGG + chr4_1:62212294-62212313 None:intergenic 65.0%
! CGGTCTGGTTGGGGGCATGG+AGG + chr4_1:62212291-62212310 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 62207856 62213471 62207856 ID=Msa0562390;Name=Msa0562390
chr4_1 mRNA 62207856 62213471 62207856 ID=Msa0562390-mRNA-1;Parent=Msa0562390;Name=Msa0562390-mRNA-1;_AED=0.38;_eAED=0.39;_QI=0|0.12|0.11|1|0.12|0.11|9|305|515
chr4_1 exon 62207856 62208418 62207856 ID=Msa0562390-mRNA-1:exon:19675;Parent=Msa0562390-mRNA-1
chr4_1 exon 62208860 62209081 62208860 ID=Msa0562390-mRNA-1:exon:19674;Parent=Msa0562390-mRNA-1
chr4_1 exon 62209158 62209182 62209158 ID=Msa0562390-mRNA-1:exon:19673;Parent=Msa0562390-mRNA-1
chr4_1 exon 62209747 62209978 62209747 ID=Msa0562390-mRNA-1:exon:19672;Parent=Msa0562390-mRNA-1
chr4_1 exon 62210328 62210567 62210328 ID=Msa0562390-mRNA-1:exon:19671;Parent=Msa0562390-mRNA-1
chr4_1 exon 62210587 62210595 62210587 ID=Msa0562390-mRNA-1:exon:19670;Parent=Msa0562390-mRNA-1
chr4_1 exon 62211477 62211655 62211477 ID=Msa0562390-mRNA-1:exon:19669;Parent=Msa0562390-mRNA-1
chr4_1 exon 62212830 62212985 62212830 ID=Msa0562390-mRNA-1:exon:19668;Parent=Msa0562390-mRNA-1
chr4_1 exon 62213245 62213471 62213245 ID=Msa0562390-mRNA-1:exon:19667;Parent=Msa0562390-mRNA-1
chr4_1 CDS 62213245 62213471 62213245 ID=Msa0562390-mRNA-1:cds;Parent=Msa0562390-mRNA-1
chr4_1 CDS 62212830 62212985 62212830 ID=Msa0562390-mRNA-1:cds;Parent=Msa0562390-mRNA-1
chr4_1 CDS 62211477 62211655 62211477 ID=Msa0562390-mRNA-1:cds;Parent=Msa0562390-mRNA-1
chr4_1 CDS 62210587 62210595 62210587 ID=Msa0562390-mRNA-1:cds;Parent=Msa0562390-mRNA-1
chr4_1 CDS 62210328 62210567 62210328 ID=Msa0562390-mRNA-1:cds;Parent=Msa0562390-mRNA-1
chr4_1 CDS 62209747 62209978 62209747 ID=Msa0562390-mRNA-1:cds;Parent=Msa0562390-mRNA-1
chr4_1 CDS 62209158 62209182 62209158 ID=Msa0562390-mRNA-1:cds;Parent=Msa0562390-mRNA-1
chr4_1 CDS 62208860 62209081 62208860 ID=Msa0562390-mRNA-1:cds;Parent=Msa0562390-mRNA-1
chr4_1 CDS 62208161 62208418 62208161 ID=Msa0562390-mRNA-1:cds;Parent=Msa0562390-mRNA-1
chr4_1 three_prime_UTR 62207856 62208160 62207856 ID=Msa0562390-mRNA-1:three_prime_utr;Parent=Msa0562390-mRNA-1
Gene Sequence

>Msa0562390

ATGGAATTAACGTATGCTCCAGTGCCCTTTGTCCAAGAATTAGCAAAGGAGGCATTGACCAAAGTTCCAGATCGCTATGTTCGTCCACATCATGACCGTCCAACATTATCTTCAACTACTACTAGTACTCCTTTACCTCAACTTCCTGTTATTGACCTTAGCAAATTGTTATCATCCCATGATCTCAATGAACCTGAGCTGAAGAAACTACACTATGCTTGTAAAGATTTGGGCAAACAGAAAGGGGATGTGGAGGGATATGGTCAGGCCTTTGTTGTCTCTGAGGAACAAAAACTAGATTGGGCAGATATGTTTTTCTTGTTCACTTTGCCACCCCACAAAAGGAAACCTCACTTGTTTTCCAACATACCCCTACCATTCAGTGAACACCGAGCAACAGTTAACTCAGAGAAGGAGAGGTTTTCCATAGCCTCATTCTACAGCCCTGCTTTTAATACAATTCTTAATCCAGCACCAAGCCTTGTAACTCCAAATACACCTGCAGTGTTTAAGAGAATTAGTCCAGGAGAATACTTCAAAGGATACCTTGCACAAGAACTCTTACAATTTGATGAACGTAGGATGGATATAAGATCTATTCTGGTGCCCTCCGTTCAAGAGCTAGCAAAGGAATCATTGACCAATGTTCCAGAGCGATATGTTCTTCCAGATCAAGACTCTGTAGTACTATCTAACCCTACCTCTTCTTTACCTCAAGTTCCTGTCATCGATCTTGCCAAATTGTTGTCTCAAGATCTTAACCTCAAGGGACATGAGCTTGAGAAGCTACACTCTGCCTGCAAAGAATGGGTAAGTTCTTCCTTAGTGGAAAATATGAAGAGAGGAGCTAAAACATTGTTTGAACTTTCAATGGAAGAAAAGAAGAAGCTATGGCAGAAAGAAGGAGACTTGGAGGGATTTGGTCAGGCCTTCATTTTATCTGAAGAACAGAAACTAGAATGGGCAGATGCTTTTTTCTTGAAAACACTACCTTCTCACTCAAGGAATCCCCATATATTCAACCAAATCCCCCAAACATTCAGAGAATCTAGAGATATATTCTACAGAGTATTTAACATAGGAACTCAAGCCATAAGGGTGAATTATTATCCTCCATGCCCCCAACCAGACCGAGTCATTGGCCTAAAGTCTCATTCTGATATTAATGGCCTCACCATCCTTCTTCAAATCAGCGATATAGAAGGCCTTCAAATAAAAAAGGATGGACAATGGATTCCTATTAAACCCATGCCTAATGCTTTCATCATCAATATTGGTGACATATTAGAGATTATAACGAATGGAATTTACCCAAGCATTGAGCATCGAGCAATAGTTAATTCAGAGAAAGAGAGGATATCCCTAGCTGCTTTTTATGCCCCTAACATGCAAGCAATGTTAGCTCCAGCACCAAGTCTTGTTACTCAAGAAAGACCAGCACAGTATAGAAGAATTAGTGTTGTAGATCACTTCAATGGCTACTTTTCACAAGAGCTCCGTGGAAAATCATATCTAAATGAAATGAAGATCACAAAGGGTGGAGAATGA
Protein sequence

>Msa0562390

MELTYAPVPFVQELAKEALTKVPDRYVRPHHDRPTLSSTTTSTPLPQLPVIDLSKLLSSHDLNEPELKKLHYACKDLGKQKGDVEGYGQAFVVSEEQKLDWADMFFLFTLPPHKRKPHLFSNIPLPFSEHRATVNSEKERFSIASFYSPAFNTILNPAPSLVTPNTPAVFKRISPGEYFKGYLAQELLQFDERRMDIRSILVPSVQELAKESLTNVPERYVLPDQDSVVLSNPTSSLPQVPVIDLAKLLSQDLNLKGHELEKLHSACKEWVSSSLVENMKRGAKTLFELSMEEKKKLWQKEGDLEGFGQAFILSEEQKLEWADAFFLKTLPSHSRNPHIFNQIPQTFRESRDIFYRVFNIGTQAIRVNYYPPCPQPDRVIGLKSHSDINGLTILLQISDIEGLQIKKDGQWIPIKPMPNAFIINIGDILEIITNGIYPSIEHRAIVNSEKERISLAAFYAPNMQAMLAPAPSLVTQERPAQYRRISVVDHFNGYFSQELRGKSYLNEMKITKGGE*