Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0705540 | XP_003630266.2 | 89.700 | 466 | 39 | 2 | 1 | 466 | 1 | 457 | 0.0 | 852 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0705540 | G7LE20 | 89.700 | 466 | 39 | 2 | 1 | 466 | 1 | 457 | 0.0 | 852 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0705540 | Msa0715310 | 0.817262 | 3.613194e-52 | -8.615850e-47 |
| Msa0705540 | Msa0836680 | 0.806675 | 7.331197e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0705540 | MtrunA17_Chr8g0384271 | 89.700 | 466 | 39 | 2 | 1 | 466 | 1 | 457 | 0.0 | 852 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 118 sgRNAs with CRISPR-Local
Find 444 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCTTACCTTTAACCTTAT+TGG | 0.116339 | 4_4:+78293838 | None:intergenic |
| TTTGCGTTGCTTATTGCTTA+TGG | 0.236381 | 4_4:+78296970 | None:intergenic |
| TCGGATTCGACTGTTCAAAT+TGG | 0.245133 | 4_4:+78293576 | None:intergenic |
| TTGGATAATATTGACACTTC+TGG | 0.246799 | 4_4:-78293905 | Msa0705540:CDS |
| CCATCTTCCAATAAGGTTAA+AGG | 0.265056 | 4_4:-78293845 | Msa0705540:intron |
| CTCTCAATGGTGTGTTCATC+TGG | 0.271928 | 4_4:-78296481 | Msa0705540:exon |
| TGACAAGATAGAGAAATTTA+AGG | 0.272772 | 4_4:+78294291 | None:intergenic |
| CAAACTTGCTTGAAGCTTGA+TGG | 0.276475 | 4_4:-78294238 | Msa0705540:CDS |
| TTGGATGATGCTGGAATTAA+TGG | 0.311149 | 4_4:-78292954 | Msa0705540:CDS |
| GCAGAGAAGATCTGAGTCTT+TGG | 0.331300 | 4_4:-78293924 | Msa0705540:CDS |
| TTGTTTGTTGCATGGTTCCT+AGG | 0.331382 | 4_4:+78290112 | None:intergenic |
| TGCATTGCAAGATTCATCTC+TGG | 0.335435 | 4_4:-78291089 | Msa0705540:CDS |
| GAGTGGAGAATTGCGGGAAT+TGG | 0.350766 | 4_4:+78296725 | None:intergenic |
| ACCTTTAACCTTACTGGAAA+AGG | 0.353980 | 4_4:+78293546 | None:intergenic |
| AGTTTCTCTCAAACTGTTCC+AGG | 0.359295 | 4_4:-78296415 | Msa0705540:intron |
| GTGGATGTATTACTGAAGTT+TGG | 0.365307 | 4_4:+78292916 | None:intergenic |
| CGGATTCGACTGTTCAAATT+GGG | 0.368946 | 4_4:+78293577 | None:intergenic |
| CGCCGGAGAAGGCAATAAAT+AGG | 0.371181 | 4_4:+78296921 | None:intergenic |
| CACCAAGGGTACTAAATAAC+AGG | 0.372303 | 4_4:+78290078 | None:intergenic |
| ATTACAGATATGCATATCTA+TGG | 0.375946 | 4_4:-78295591 | Msa0705540:intron |
| ATTCCATTTAGGGAAGGATT+TGG | 0.378109 | 4_4:-78291490 | Msa0705540:intron |
| TGGATAATATTGACACTTCT+GGG | 0.392416 | 4_4:-78293904 | Msa0705540:CDS |
| TTCCTGTTATTTAGTACCCT+TGG | 0.396356 | 4_4:-78290080 | Msa0705540:exon |
| CTTGCAAAAGAATAAGCCTT+TGG | 0.401850 | 4_4:+78290566 | None:intergenic |
| TTCCTATTTATTGCCTTCTC+CGG | 0.404883 | 4_4:-78296923 | Msa0705540:five_prime_UTR |
| CCTTTAACCTTATTGGAAGA+TGG | 0.409258 | 4_4:+78293845 | None:intergenic |
| GGACCCTTCATTTCAACAAA+TGG | 0.409580 | 4_4:-78291065 | Msa0705540:CDS |
| TCACGTGCTGCTGCTGCATA+TGG | 0.410407 | 4_4:+78291412 | None:intergenic |
| CTCTGATTCGACCATTCAAA+TGG | 0.410527 | 4_4:+78293873 | None:intergenic |
| AGTGGCTCCATCTTCCAATA+AGG | 0.413776 | 4_4:-78293852 | Msa0705540:CDS |
| TTGTCCATTTGTTGAAATGA+AGG | 0.422109 | 4_4:+78291061 | None:intergenic |
| TGCGGGAATTGGAATTGAAT+TGG | 0.426027 | 4_4:+78296736 | None:intergenic |
| GACTCTGTTCCATGCCTGTC+TGG | 0.429397 | 4_4:+78292491 | None:intergenic |
| TCAAGAGAGTCAGACCTTCT+CGG | 0.430100 | 4_4:+78293625 | None:intergenic |
| ATCTTTGTGGCAAGAGGTGC+AGG | 0.430929 | 4_4:+78291232 | None:intergenic |
| TGTTTGTTGCATGGTTCCTA+GGG | 0.432689 | 4_4:+78290113 | None:intergenic |
| TTGTTCTTGACAATGTTTCA+AGG | 0.434369 | 4_4:-78290631 | Msa0705540:CDS |
| TGGACCGCATCTCTATGTTC+TGG | 0.434395 | 4_4:+78291453 | None:intergenic |
| AGGTCTGCTGCTACTAATGT+TGG | 0.440803 | 4_4:-78290611 | Msa0705540:CDS |
| CCTTTAACCTTACTGGAAAA+GGG | 0.442797 | 4_4:+78293547 | None:intergenic |
| ATGGTGTGTTCATCTGGAAA+TGG | 0.445696 | 4_4:-78296475 | Msa0705540:CDS |
| GACGAATAGCAGCACGCAAT+CGG | 0.449060 | 4_4:+78291188 | None:intergenic |
| TTGATGGAAACACAGGGAAT+AGG | 0.450469 | 4_4:-78294222 | Msa0705540:CDS |
| TTGTGAATAATATATCTTTG+TGG | 0.456727 | 4_4:+78291219 | None:intergenic |
| GCATTGCAAGATTCATCTCT+GGG | 0.460230 | 4_4:-78291088 | Msa0705540:CDS |
| TCTCTCTTCTCCGCCGGAGA+AGG | 0.463208 | 4_4:+78296910 | None:intergenic |
| GCAAATTTGCTCAGTGAAGA+AGG | 0.470842 | 4_4:-78296160 | Msa0705540:intron |
| CTGTTATTTAGTACCCTTGG+TGG | 0.471319 | 4_4:-78290077 | Msa0705540:exon |
| GAAGTTTGCTTGCTTAAAGC+AGG | 0.477795 | 4_4:-78290686 | Msa0705540:CDS |
| CGTAGATGCGGCATCTATGT+TGG | 0.478787 | 4_4:-78292973 | Msa0705540:intron |
| AAAACTGTGAAGTTAACAAA+TGG | 0.479257 | 4_4:-78292458 | Msa0705540:CDS |
| GGGTCACAATCCCATTTGAA+TGG | 0.481088 | 4_4:-78293884 | Msa0705540:CDS |
| CTCAGCTGCTGACTTCTGTC+TGG | 0.488706 | 4_4:+78296216 | None:intergenic |
| GAAGAACATTACCTCGGATT+CGG | 0.488717 | 4_4:+78296659 | None:intergenic |
| CAGCAGCACGTGATGACAAA+TGG | 0.491730 | 4_4:-78291402 | Msa0705540:intron |
| ATTGGAATTGAATTGGTGAA+TGG | 0.494101 | 4_4:+78296743 | None:intergenic |
| TAAATCCTACCTCAGTGTAC+TGG | 0.497886 | 4_4:+78290023 | None:intergenic |
| ACCTCGGATTCGGAACGAAA+GGG | 0.498073 | 4_4:+78296669 | None:intergenic |
| CTTGTTTGTGAGGGGTTATG+AGG | 0.502649 | 4_4:+78293963 | None:intergenic |
| CTGCAGTAGCTTGTTTGTGA+GGG | 0.505966 | 4_4:+78293954 | None:intergenic |
| TGTCCATTTGTTGAAATGAA+GGG | 0.519110 | 4_4:+78291062 | None:intergenic |
| CCGCAGTTGTGGAGCCGAGA+AGG | 0.520212 | 4_4:-78293639 | Msa0705540:intron |
| GGAACCATGCAACAAACAAA+AGG | 0.524220 | 4_4:-78290108 | Msa0705540:CDS |
| GCATCTATGTTGGATGATGC+TGG | 0.524234 | 4_4:-78292963 | Msa0705540:CDS |
| CTATTTATTGCCTTCTCCGG+CGG | 0.528674 | 4_4:-78296920 | Msa0705540:five_prime_UTR |
| GAATTATGTACTGATGTTGC+GGG | 0.529635 | 4_4:-78291139 | Msa0705540:CDS |
| TCCCTTTCGTTCCGAATCCG+AGG | 0.532948 | 4_4:-78296670 | Msa0705540:intron |
| AGCTGCAAGGGATCAGTCAT+GGG | 0.535355 | 4_4:+78295561 | None:intergenic |
| CCACTCGGCAATGTTGTACT+CGG | 0.535849 | 4_4:-78290744 | Msa0705540:CDS |
| CAGCTGCAAGGGATCAGTCA+TGG | 0.536447 | 4_4:+78295560 | None:intergenic |
| ACTAATGTTGGTTTAACAAG+AGG | 0.545913 | 4_4:-78290599 | Msa0705540:CDS |
| TCTGATTCGACCATTCAAAT+GGG | 0.546212 | 4_4:+78293874 | None:intergenic |
| TGGTGTGTTCATCTGGAAAT+GGG | 0.548231 | 4_4:-78296474 | Msa0705540:CDS |
| TTCATCTGGAAATGGGAGAA+TGG | 0.555871 | 4_4:-78296467 | Msa0705540:CDS |
| TGTTATTTAGTACCCTTGGT+GGG | 0.556252 | 4_4:-78290076 | Msa0705540:exon |
| CATGACTGATCCCTTGCAGC+TGG | 0.556709 | 4_4:-78295559 | Msa0705540:intron |
| TTGAAGCTTGATGGAAACAC+AGG | 0.561406 | 4_4:-78294229 | Msa0705540:CDS |
| TACCTCGGATTCGGAACGAA+AGG | 0.562554 | 4_4:+78296668 | None:intergenic |
| TGATCTGACAAGCCAACACT+AGG | 0.569593 | 4_4:+78290656 | None:intergenic |
| GCGGGTCAAAAGACATCACT+TGG | 0.570224 | 4_4:-78291121 | Msa0705540:CDS |
| TGCAGTAGCTTGTTTGTGAG+GGG | 0.575709 | 4_4:+78293955 | None:intergenic |
| GCAGGAGGTGTGCCTAGTGT+TGG | 0.576114 | 4_4:-78290668 | Msa0705540:CDS |
| CAGATGAACACACCATTGAG+AGG | 0.578036 | 4_4:+78296482 | None:intergenic |
| CGCATCTCTATGTTCTGGAA+CGG | 0.587438 | 4_4:+78291458 | None:intergenic |
| ACTGCAGTAGCTTGTTTGTG+AGG | 0.587955 | 4_4:+78293953 | None:intergenic |
| CACATCTTGATGTACCAGAC+AGG | 0.594384 | 4_4:-78292505 | Msa0705540:CDS |
| GATGATGCTGGAATTAATGG+TGG | 0.597009 | 4_4:-78292951 | Msa0705540:CDS |
| GCGTTCTCGTCGCATTCTCG+CGG | 0.597088 | 4_4:-78296695 | Msa0705540:five_prime_UTR |
| TAATATATCTTTGTGGCAAG+AGG | 0.598129 | 4_4:+78291226 | None:intergenic |
| GGAAACCTCCAAGGAAACAA+AGG | 0.603755 | 4_4:-78294201 | Msa0705540:CDS |
| GCACTGCAACAGAGAAGAGA+AGG | 0.605575 | 4_4:-78297004 | Msa0705540:five_prime_UTR |
| AATAGCAGCACGCAATCGGT+TGG | 0.606354 | 4_4:+78291192 | None:intergenic |
| ATTGACATACCTCCTTGTTG+AGG | 0.606445 | 4_4:+78291035 | None:intergenic |
| GTTTGCTTGCTTAAAGCAGG+AGG | 0.608726 | 4_4:-78290683 | Msa0705540:CDS |
| GGAATTATGTACTGATGTTG+CGG | 0.614057 | 4_4:-78291140 | Msa0705540:CDS |
| GGTATCCAGTACACTGAGGT+AGG | 0.619307 | 4_4:-78290028 | Msa0705540:three_prime_UTR |
| AATTGGTGAATGGTGATGAT+CGG | 0.630421 | 4_4:+78296753 | None:intergenic |
| ATTGCAAGATTCATCTCTGG+GGG | 0.633955 | 4_4:-78291086 | Msa0705540:CDS |
| GTTTGTTGCATGGTTCCTAG+GGG | 0.638633 | 4_4:+78290114 | None:intergenic |
| CTTGATGTACCAGACAGGCA+TGG | 0.642371 | 4_4:-78292500 | Msa0705540:CDS |
| TACTGGAAAAGGGAGCAACT+CGG | 0.644112 | 4_4:+78293557 | None:intergenic |
| AGATGAACACACCATTGAGA+GGG | 0.649034 | 4_4:+78296483 | None:intergenic |
| TGATAATATTGACACTGCTG+TGG | 0.652843 | 4_4:-78293605 | Msa0705540:CDS |
| CAAAGATATATTATTCACAA+AGG | 0.657942 | 4_4:-78291216 | Msa0705540:CDS |
| GGAGAATGGAGGTCATGACA+AGG | 0.669375 | 4_4:-78296453 | Msa0705540:CDS |
| GTACTTTGAGAACTTGAGTG+AGG | 0.670056 | 4_4:-78291161 | Msa0705540:CDS |
| ATCTGGAAATGGGAGAATGG+AGG | 0.677738 | 4_4:-78296464 | Msa0705540:CDS |
| CATTGCAAGATTCATCTCTG+GGG | 0.685452 | 4_4:-78291087 | Msa0705540:CDS |
| TGAAGCTTGATGGAAACACA+GGG | 0.686436 | 4_4:-78294228 | Msa0705540:CDS |
| CAAGATAGAGAAATTTAAGG+CGG | 0.690172 | 4_4:+78294294 | None:intergenic |
| CGTTCCAGAACATAGAGATG+CGG | 0.700400 | 4_4:-78291457 | Msa0705540:CDS |
| CAGGGAATAGGAAACCTCCA+AGG | 0.701061 | 4_4:-78294210 | Msa0705540:CDS |
| AATGGACAATGTCCTCAACA+AGG | 0.701306 | 4_4:-78291047 | Msa0705540:CDS |
| TTTGAATGGTCGAATCAGAG+TGG | 0.707075 | 4_4:-78293870 | Msa0705540:CDS |
| CCGAGTACAACATTGCCGAG+TGG | 0.716482 | 4_4:+78290744 | None:intergenic |
| GGACAATGTCCTCAACAAGG+AGG | 0.725650 | 4_4:-78291044 | Msa0705540:intron |
| AGTTTGAGAGAAACTTCCAG+CGG | 0.743706 | 4_4:+78296423 | None:intergenic |
| TACAGGTATCCAGTACACTG+AGG | 0.784385 | 4_4:-78290032 | Msa0705540:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTTACCTTTTTTTTTA+GGG | + | chr4_4:78290034-78290053 | None:intergenic | 10.0% |
| !!! | ATTTATTTACCTTTTTTTTT+AGG | + | chr4_4:78290035-78290054 | None:intergenic | 10.0% |
| !! | ATTAAATTAATATTGAATGA+GGG | + | chr4_4:78290821-78290840 | None:intergenic | 10.0% |
| !!! | ATTTTTGTTTTTGTTTTTTA+TGG | - | chr4_4:78290944-78290963 | Msa0705540:intron | 10.0% |
| !!! | TTTTTGTTTTTGTTTTTTAT+GGG | - | chr4_4:78290945-78290964 | Msa0705540:intron | 10.0% |
| !! | TATTATTAACATTAAAAAGA+AGG | + | chr4_4:78291381-78291400 | None:intergenic | 10.0% |
| !!! | ATTATTATAGATTTTTTCAT+CGG | - | chr4_4:78292302-78292321 | Msa0705540:intron | 10.0% |
| !!! | TTGTTTTAACTTAAAAAAAT+TGG | + | chr4_4:78293162-78293181 | None:intergenic | 10.0% |
| !!! | GTATATTATTTGTATTTTTA+AGG | + | chr4_4:78294132-78294151 | None:intergenic | 10.0% |
| !!! | CTTATAAATAATAAAGTATT+TGG | - | chr4_4:78294185-78294204 | Msa0705540:intron | 10.0% |
| !!! | AATATTTTTTTATTTAGCAT+TGG | + | chr4_4:78296446-78296465 | None:intergenic | 10.0% |
| !! | CATTAAATTAATATTGAATG+AGG | + | chr4_4:78290822-78290841 | None:intergenic | 15.0% |
| !!! | TAGTATATTTTATTCAATTC+AGG | - | chr4_4:78290850-78290869 | Msa0705540:intron | 15.0% |
| !!! | AGTATATTTTATTCAATTCA+GGG | - | chr4_4:78290851-78290870 | Msa0705540:intron | 15.0% |
| !!! | TTTTGTTTTTGTTTTTTATG+GGG | - | chr4_4:78290946-78290965 | Msa0705540:intron | 15.0% |
| !!! | TTATTGTTATTTGGTATTTA+AGG | + | chr4_4:78291008-78291027 | None:intergenic | 15.0% |
| !!! | AGACATTATTTATTGTTATT+TGG | + | chr4_4:78291017-78291036 | None:intergenic | 15.0% |
| !! | AAATAAAAAAATCAAGCAAA+AGG | + | chr4_4:78292064-78292083 | None:intergenic | 15.0% |
| !! | CTTGAATTATATTTATATTC+TGG | - | chr4_4:78292338-78292357 | Msa0705540:intron | 15.0% |
| !! | TTATAAAACAAATTGGAAAT+AGG | + | chr4_4:78292471-78292490 | None:intergenic | 15.0% |
| !!! | TTGTCTTAATTTTAAAACAT+TGG | + | chr4_4:78293460-78293479 | None:intergenic | 15.0% |
| !! | CTTGAATATTAATAATTAAG+AGG | + | chr4_4:78295113-78295132 | None:intergenic | 15.0% |
| !! | CTCTTAATTATTAATATTCA+AGG | - | chr4_4:78295111-78295130 | Msa0705540:intron | 15.0% |
| !! | AATATGAATATAATATAAGC+CGG | + | chr4_4:78295215-78295234 | None:intergenic | 15.0% |
| !!! | TTTTTGTTGAATTTATATGT+AGG | - | chr4_4:78295260-78295279 | Msa0705540:intron | 15.0% |
| !!! | TTTTGTTGAATTTATATGTA+GGG | - | chr4_4:78295261-78295280 | Msa0705540:intron | 15.0% |
| !!! | ATAAATAGGAAAAGATTTTG+AGG | + | chr4_4:78289973-78289992 | None:intergenic | 20.0% |
| !! | AAATATCACCCTAAAAAAAA+AGG | - | chr4_4:78290023-78290042 | Msa0705540:three_prime_UTR | 20.0% |
| !!! | ATTTTCTTCATTCTCTTTTA+GGG | - | chr4_4:78290062-78290081 | Msa0705540:three_prime_UTR | 20.0% |
| !! | CGAAATAAACAATTGAAAAT+CGG | + | chr4_4:78290290-78290309 | None:intergenic | 20.0% |
| !!! | TCATATAATTTGTTCATGTA+TGG | - | chr4_4:78290648-78290667 | Msa0705540:CDS | 20.0% |
| !! | ACACATTGAATTAAAAAAGT+CGG | + | chr4_4:78290792-78290811 | None:intergenic | 20.0% |
| !!! | TTTGTTTTTGTTTTTTATGG+GGG | - | chr4_4:78290947-78290966 | Msa0705540:intron | 20.0% |
| !!! | TAGTCTTCATTATATGTTTT+GGG | - | chr4_4:78291262-78291281 | Msa0705540:intron | 20.0% |
| !! | CAAATATACTAGTATTACTT+TGG | - | chr4_4:78291471-78291490 | Msa0705540:CDS | 20.0% |
| !! | CAGTAAATCTAAAAATATAC+CGG | + | chr4_4:78291635-78291654 | None:intergenic | 20.0% |
| !! | AATATCATATAAATTGCAGA+GGG | + | chr4_4:78291782-78291801 | None:intergenic | 20.0% |
| !! | AAATATCATATAAATTGCAG+AGG | + | chr4_4:78291783-78291802 | None:intergenic | 20.0% |
| !! | ATTATTGTATTTGTAATCCT+TGG | - | chr4_4:78291970-78291989 | Msa0705540:intron | 20.0% |
| !! | AATTCATTTAACTGATTGTT+TGG | - | chr4_4:78292365-78292384 | Msa0705540:intron | 20.0% |
| !! | CAAAAGGTTATAAAACAAAT+TGG | + | chr4_4:78292478-78292497 | None:intergenic | 20.0% |
| !!! | CAATTTGTTTTATAACCTTT+TGG | - | chr4_4:78292476-78292495 | Msa0705540:CDS | 20.0% |
| !!! | ACTAATGAATTCTCATTTTA+AGG | + | chr4_4:78292759-78292778 | None:intergenic | 20.0% |
| !!! | AGTTTTTGAAACTTGTATTT+AGG | - | chr4_4:78292827-78292846 | Msa0705540:intron | 20.0% |
| !! | AATGTATTGAGAAAAACTAA+AGG | + | chr4_4:78292887-78292906 | None:intergenic | 20.0% |
| !!! | CTCAATACATTTTAATGTTA+AGG | - | chr4_4:78292896-78292915 | Msa0705540:intron | 20.0% |
| !! | TTATTGTACAATATGAGAAA+AGG | + | chr4_4:78293108-78293127 | None:intergenic | 20.0% |
| !! | AAAAAATTGGTTAAAAGTGA+GGG | + | chr4_4:78293149-78293168 | None:intergenic | 20.0% |
| !! | AAAAAAATTGGTTAAAAGTG+AGG | + | chr4_4:78293150-78293169 | None:intergenic | 20.0% |
| !! | AGACAATATCAATTTATTGT+TGG | - | chr4_4:78293474-78293493 | Msa0705540:intron | 20.0% |
| !!! | AATATTACAATTCGAGTTTA+CGG | - | chr4_4:78293703-78293722 | Msa0705540:intron | 20.0% |
| !!! | ATGAACTTTTTTCTAGATTT+TGG | - | chr4_4:78294530-78294549 | Msa0705540:intron | 20.0% |
| !! | CTCGAAATTATTAATATTCA+AGG | + | chr4_4:78294688-78294707 | None:intergenic | 20.0% |
| !!! | ACTTGTTTTCAAAATATACA+TGG | + | chr4_4:78294924-78294943 | None:intergenic | 20.0% |
| !!! | TGCATTCATAAATTTAAGAT+TGG | + | chr4_4:78295016-78295035 | None:intergenic | 20.0% |
| !!! | ATTATAGAGTTGTACTTTTT+CGG | - | chr4_4:78295062-78295081 | Msa0705540:intron | 20.0% |
| !! | ATGGAATCAGAAAAAATAAT+CGG | + | chr4_4:78295402-78295421 | None:intergenic | 20.0% |
| !!! | TATTTTTTCTGATTCCATTT+AGG | - | chr4_4:78295404-78295423 | Msa0705540:intron | 20.0% |
| !!! | ATTTTTTCTGATTCCATTTA+GGG | - | chr4_4:78295405-78295424 | Msa0705540:intron | 20.0% |
| !! | TTGTGAATAATATATCTTTG+TGG | + | chr4_4:78295689-78295708 | None:intergenic | 20.0% |
| !! | CAAAGATATATTATTCACAA+AGG | - | chr4_4:78295689-78295708 | Msa0705540:intron | 20.0% |
| !! | ATCATCAATCTTCTTAATTA+AGG | - | chr4_4:78295891-78295910 | Msa0705540:intron | 20.0% |
| !! | TCATCAATCTTCTTAATTAA+GGG | - | chr4_4:78295892-78295911 | Msa0705540:intron | 20.0% |
| !!! | TGTTATTTATGTTGTCTTTT+TGG | - | chr4_4:78296376-78296395 | Msa0705540:intron | 20.0% |
| !! | AATAATCATTCCAACAATTA+TGG | + | chr4_4:78296588-78296607 | None:intergenic | 20.0% |
| !!! | TTTGAGTAATTTCCTTTTAT+CGG | + | chr4_4:78296923-78296942 | None:intergenic | 20.0% |
| !!! | GAAAACTTTTATATAGTTGA+TGG | - | chr4_4:78296972-78296991 | Msa0705540:five_prime_UTR | 20.0% |
| !! | CATTTTCTTCATTCTCTTTT+AGG | - | chr4_4:78290061-78290080 | Msa0705540:three_prime_UTR | 25.0% |
| !!! | AATATGAAGTGATTTTGATG+AGG | + | chr4_4:78290110-78290129 | None:intergenic | 25.0% |
| ! | TAAACAATTGAAAATCGGAA+AGG | + | chr4_4:78290285-78290304 | None:intergenic | 25.0% |
| !! | GTAGTCTTCATTATATGTTT+TGG | - | chr4_4:78291261-78291280 | Msa0705540:intron | 25.0% |
| ! | ATTACAGATATGCATATCTA+TGG | - | chr4_4:78291314-78291333 | Msa0705540:intron | 25.0% |
| ! | TTAGATTTACTGAAATTCGA+CGG | - | chr4_4:78291643-78291662 | Msa0705540:intron | 25.0% |
| ! | GCAATTAAAAACTTAAACCA+AGG | + | chr4_4:78291990-78292009 | None:intergenic | 25.0% |
| !!! | TTTTTTGTTTGTCAACACAA+AGG | - | chr4_4:78292157-78292176 | Msa0705540:intron | 25.0% |
| ! | TGACAAGATAGAGAAATTTA+AGG | + | chr4_4:78292617-78292636 | None:intergenic | 25.0% |
| ! | TCATATTGTACAATAACTCT+AGG | - | chr4_4:78293112-78293131 | Msa0705540:intron | 25.0% |
| !!! | CTCAATACATTTTAATGTGA+AGG | - | chr4_4:78293194-78293213 | Msa0705540:intron | 25.0% |
| ! | AAAAACGAGAGCTATATAAA+GGG | + | chr4_4:78293390-78293409 | None:intergenic | 25.0% |
| ! | AAAAAACGAGAGCTATATAA+AGG | + | chr4_4:78293391-78293410 | None:intergenic | 25.0% |
| !! | AAAACATTGGTTAAAAGTGA+GGG | + | chr4_4:78293447-78293466 | None:intergenic | 25.0% |
| !! | TAAAACATTGGTTAAAAGTG+AGG | + | chr4_4:78293448-78293467 | None:intergenic | 25.0% |
| ! | TGGAAAGTTGTATGATATAT+TGG | - | chr4_4:78293494-78293513 | Msa0705540:intron | 25.0% |
| !! | TTGTATGATATATTGGTGTT+AGG | - | chr4_4:78293501-78293520 | Msa0705540:intron | 25.0% |
| ! | ATATTATGCATAACAGAATC+TGG | + | chr4_4:78293881-78293900 | None:intergenic | 25.0% |
| !! | AATAATAAAGTATTTGGGCT+TGG | - | chr4_4:78294191-78294210 | Msa0705540:intron | 25.0% |
| !! | ATAATAAAGTATTTGGGCTT+GGG | - | chr4_4:78294192-78294211 | Msa0705540:intron | 25.0% |
| ! | CGTATTAGTTATAGTTTATC+CGG | + | chr4_4:78294246-78294265 | None:intergenic | 25.0% |
| ! | CATAGCAAACAAGATTAATA+TGG | + | chr4_4:78294283-78294302 | None:intergenic | 25.0% |
| ! | ATTTGAAAGCAGAAAGAAAT+CGG | + | chr4_4:78294336-78294355 | None:intergenic | 25.0% |
| ! | AAAACTGTGAAGTTAACAAA+TGG | - | chr4_4:78294447-78294466 | Msa0705540:intron | 25.0% |
| ! | ATCTAGAAAAAAGTTCATCA+CGG | + | chr4_4:78294528-78294547 | None:intergenic | 25.0% |
| ! | AAACTAACTTATACGTGTAT+TGG | + | chr4_4:78294841-78294860 | None:intergenic | 25.0% |
| !! | TCTAAAACAATGAGATATGA+TGG | + | chr4_4:78294886-78294905 | None:intergenic | 25.0% |
| !! | TTACTCTATGTTATGTCTTT+TGG | - | chr4_4:78295346-78295365 | Msa0705540:intron | 25.0% |
| ! | TGGAATCAGAAAAAATAATC+GGG | + | chr4_4:78295401-78295420 | None:intergenic | 25.0% |
| ! | TGTTAAACCAAAACCAAAAA+GGG | + | chr4_4:78295625-78295644 | None:intergenic | 25.0% |
| ! | AAAGACAAAAAGAAATGTGA+GGG | + | chr4_4:78296706-78296725 | None:intergenic | 25.0% |
| ! | AAAAGACAAAAAGAAATGTG+AGG | + | chr4_4:78296707-78296726 | None:intergenic | 25.0% |
| !!! | TGATGTTGTATTTGTTTTGT+AGG | - | chr4_4:78296764-78296783 | Msa0705540:five_prime_UTR | 25.0% |
| AGAGAATGAAGAAAATGATG+AGG | + | chr4_4:78290058-78290077 | None:intergenic | 30.0% | |
| ATTGGAATTGAATTGGTGAA+TGG | + | chr4_4:78290165-78290184 | None:intergenic | 30.0% | |
| !!! | GTTTTTTTTTTCCCTCTCAA+TGG | - | chr4_4:78290411-78290430 | Msa0705540:intron | 30.0% |
| CGAAAATCTAAGAAGTAGAA+TGG | + | chr4_4:78290527-78290546 | None:intergenic | 30.0% | |
| ! | TTTTCGTCTATGTGAAGTTA+TGG | - | chr4_4:78290541-78290560 | Msa0705540:intron | 30.0% |
| ! | AATTTGTTCATGTATGGTCT+TGG | - | chr4_4:78290654-78290673 | Msa0705540:CDS | 30.0% |
| !!! | TTTTTGTTTTTTATGGGGGT+GGG | - | chr4_4:78290951-78290970 | Msa0705540:intron | 30.0% |
| ATTTAAGGATCACTATTTGC+AGG | + | chr4_4:78290993-78291012 | None:intergenic | 30.0% | |
| CAAAAAACCTCAATTGCAAA+AGG | - | chr4_4:78291039-78291058 | Msa0705540:intron | 30.0% | |
| GTAAAAATATGCATGAACAC+TGG | + | chr4_4:78291240-78291259 | None:intergenic | 30.0% | |
| ATACTAGAGAAAATGCTAAC+TGG | + | chr4_4:78291568-78291587 | None:intergenic | 30.0% | |
| AATGTGTTCAACATTTCACA+TGG | - | chr4_4:78291605-78291624 | Msa0705540:intron | 30.0% | |
| GGACATAAGGAAACAATTAT+TGG | + | chr4_4:78291710-78291729 | None:intergenic | 30.0% | |
| ATAATTGTTTCCTTATGTCC+AGG | - | chr4_4:78291710-78291729 | Msa0705540:intron | 30.0% | |
| GAGACATAACTTATCCTTTA+AGG | - | chr4_4:78291865-78291884 | Msa0705540:intron | 30.0% | |
| !! | CTGTACTCTAAAATCCTTAA+AGG | + | chr4_4:78291882-78291901 | None:intergenic | 30.0% |
| TTCATTTACATACAAAGCCA+GGG | + | chr4_4:78291923-78291942 | None:intergenic | 30.0% | |
| ! | TCTAGTTTAAGATGTCTAGT+GGG | - | chr4_4:78292014-78292033 | Msa0705540:intron | 30.0% |
| ! | ATTGTTTGGTATCCTTTTTG+AGG | - | chr4_4:78292379-78292398 | Msa0705540:intron | 30.0% |
| CAAAGCATAAGGAAATTGAA+AGG | + | chr4_4:78292556-78292575 | None:intergenic | 30.0% | |
| CTTTCAATTTCCTTATGCTT+TGG | - | chr4_4:78292554-78292573 | Msa0705540:intron | 30.0% | |
| CAAGATAGAGAAATTTAAGG+CGG | + | chr4_4:78292614-78292633 | None:intergenic | 30.0% | |
| !! | AACTTTTTCCTTTGTTTCCT+TGG | + | chr4_4:78292715-78292734 | None:intergenic | 30.0% |
| GAATGTGATTTCCTCTTTAA+AGG | - | chr4_4:78292857-78292876 | Msa0705540:intron | 30.0% | |
| ! | CTAAAGGAATTCCTTTAAAG+AGG | + | chr4_4:78292871-78292890 | None:intergenic | 30.0% |
| TTGGATAATATTGACACTTC+TGG | - | chr4_4:78293000-78293019 | Msa0705540:intron | 30.0% | |
| TGGATAATATTGACACTTCT+GGG | - | chr4_4:78293001-78293020 | Msa0705540:intron | 30.0% | |
| GATCTTACCTTTAACCTTAT+TGG | + | chr4_4:78293070-78293089 | None:intergenic | 30.0% | |
| ! | GATTTTACCTTTAACCTTAC+TGG | + | chr4_4:78293368-78293387 | None:intergenic | 30.0% |
| TTCAGGGAAAATCATAATCA+GGG | + | chr4_4:78293615-78293634 | None:intergenic | 30.0% | |
| ATGACGCATAACTAATAGTA+GGG | + | chr4_4:78293654-78293673 | None:intergenic | 30.0% | |
| ! | GGAGTAAGATTTTACTTACT+TGG | - | chr4_4:78293853-78293872 | Msa0705540:CDS | 30.0% |
| AAAATCAACTTTCGTAGATG+CGG | - | chr4_4:78293920-78293939 | Msa0705540:CDS | 30.0% | |
| ! | ATTGTTTGTCATTTGATTGC+CGG | - | chr4_4:78294224-78294243 | Msa0705540:CDS | 30.0% |
| CAAGATTAATATGGCAAACA+AGG | + | chr4_4:78294274-78294293 | None:intergenic | 30.0% | |
| AACAAATTTGACTGTTTGTG+CGG | + | chr4_4:78294595-78294614 | None:intergenic | 30.0% | |
| CTAAAACAGTGAGATATGAT+GGG | + | chr4_4:78294618-78294637 | None:intergenic | 30.0% | |
| ! | TCTAAAACAGTGAGATATGA+TGG | + | chr4_4:78294619-78294638 | None:intergenic | 30.0% |
| !! | GAATGCATAACAACTTGTTT+TGG | + | chr4_4:78294769-78294788 | None:intergenic | 30.0% |
| ACAAGTTGTTATGCATTCAT+TGG | - | chr4_4:78294771-78294790 | Msa0705540:intron | 30.0% | |
| TATTGGAGATTTGCAACTTT+GGG | + | chr4_4:78294824-78294843 | None:intergenic | 30.0% | |
| !! | TTTAGTCTTTCTGAGCTTTT+TGG | - | chr4_4:78295189-78295208 | Msa0705540:intron | 30.0% |
| !!! | ATGTTATGTCTTTTGGAGTT+TGG | - | chr4_4:78295353-78295372 | Msa0705540:intron | 30.0% |
| GTGTTAAACCAAAACCAAAA+AGG | + | chr4_4:78295626-78295645 | None:intergenic | 30.0% | |
| TAATATATCTTTGTGGCAAG+AGG | + | chr4_4:78295682-78295701 | None:intergenic | 30.0% | |
| ! | TGTCCATTTGTTGAAATGAA+GGG | + | chr4_4:78295846-78295865 | None:intergenic | 30.0% |
| ! | TTGTCCATTTGTTGAAATGA+AGG | + | chr4_4:78295847-78295866 | None:intergenic | 30.0% |
| CTTCTTAATTAAGGGTGATT+TGG | - | chr4_4:78295900-78295919 | Msa0705540:intron | 30.0% | |
| TTTAATGCTCTGTATGTTGT+TGG | - | chr4_4:78296004-78296023 | Msa0705540:intron | 30.0% | |
| !!! | CATAGAACTTAGCTTTTTTC+TGG | + | chr4_4:78296100-78296119 | None:intergenic | 30.0% |
| ! | AAAATGAACGAGTCAGTTTT+TGG | + | chr4_4:78296130-78296149 | None:intergenic | 30.0% |
| TTGTTCTTGACAATGTTTCA+AGG | - | chr4_4:78296274-78296293 | Msa0705540:intron | 30.0% | |
| !! | ACTAATGTTGGTTTAACAAG+AGG | - | chr4_4:78296306-78296325 | Msa0705540:intron | 30.0% |
| ! | CTTTTGAATTTATGCGAGTA+CGG | - | chr4_4:78296722-78296741 | Msa0705540:five_prime_UTR | 30.0% |
| ! | TTTTGAATTTATGCGAGTAC+GGG | - | chr4_4:78296723-78296742 | Msa0705540:five_prime_UTR | 30.0% |
| CAAATACAACATCATCCTTA+TGG | + | chr4_4:78296758-78296777 | None:intergenic | 30.0% | |
| !!! | CTTTTATCGGCTTCAAAAAA+TGG | + | chr4_4:78296910-78296929 | None:intergenic | 30.0% |
| !!! | CATTTTTTGAAGCCGATAAA+AGG | - | chr4_4:78296908-78296927 | Msa0705540:five_prime_UTR | 30.0% |
| TTTGCGTTGCTTATTGCTTA+TGG | + | chr4_4:78289938-78289957 | None:intergenic | 35.0% | |
| TTCCTATTTATTGCCTTCTC+CGG | - | chr4_4:78289982-78290001 | Msa0705540:three_prime_UTR | 35.0% | |
| !! | GATTTTGATGAGGTCTTCAA+TGG | + | chr4_4:78290100-78290119 | None:intergenic | 35.0% |
| ! | AATTGGTGAATGGTGATGAT+CGG | + | chr4_4:78290155-78290174 | None:intergenic | 35.0% |
| TGAAAAAGAGTGGAGAATTG+CGG | + | chr4_4:78290190-78290209 | None:intergenic | 35.0% | |
| AAAACGGAAGAACATTACCT+CGG | + | chr4_4:78290255-78290274 | None:intergenic | 35.0% | |
| AAGAAACACGAAATAGTCGT+TGG | + | chr4_4:78290313-78290332 | None:intergenic | 35.0% | |
| !!! | GTTTTTGTTTTTTATGGGGG+TGG | - | chr4_4:78290950-78290969 | Msa0705540:intron | 35.0% |
| AAATAGTCAATCCACTTCAG+AGG | - | chr4_4:78291084-78291103 | Msa0705540:CDS | 35.0% | |
| GTAACCATAAGCAGTATCAA+AGG | + | chr4_4:78291218-78291237 | None:intergenic | 35.0% | |
| TGCGTTATTCGACTAGTATT+AGG | - | chr4_4:78291413-78291432 | Msa0705540:CDS | 35.0% | |
| GCGTTATTCGACTAGTATTA+GGG | - | chr4_4:78291414-78291433 | Msa0705540:CDS | 35.0% | |
| AGTATTAGGGTCATGTTAAC+TGG | - | chr4_4:78291427-78291446 | Msa0705540:CDS | 35.0% | |
| GTATTAGGGTCATGTTAACT+GGG | - | chr4_4:78291428-78291447 | Msa0705540:CDS | 35.0% | |
| AAATGCTAACTGGTGTCTTA+GGG | + | chr4_4:78291558-78291577 | None:intergenic | 35.0% | |
| AAAATGCTAACTGGTGTCTT+AGG | + | chr4_4:78291559-78291578 | None:intergenic | 35.0% | |
| TAGTATTAGTGTGCTTCCAA+GGG | - | chr4_4:78291582-78291601 | Msa0705540:intron | 35.0% | |
| AAATGTTGAACACATTCCCT+TGG | + | chr4_4:78291601-78291620 | None:intergenic | 35.0% | |
| GCATATGGTAGGTATATTGA+TGG | - | chr4_4:78291684-78291703 | Msa0705540:intron | 35.0% | |
| TACACTAATTCCTGGACATA+AGG | + | chr4_4:78291723-78291742 | None:intergenic | 35.0% | |
| ACTTAAGGTACACTAATTCC+TGG | + | chr4_4:78291731-78291750 | None:intergenic | 35.0% | |
| AAACTGAACTGTGCAACTTA+AGG | + | chr4_4:78291746-78291765 | None:intergenic | 35.0% | |
| ! | TTGACTTTGAGTTATTACCC+TGG | - | chr4_4:78291903-78291922 | Msa0705540:intron | 35.0% |
| GTTCATTTACATACAAAGCC+AGG | + | chr4_4:78291924-78291943 | None:intergenic | 35.0% | |
| ! | CTCTAGTTTAAGATGTCTAG+TGG | - | chr4_4:78292013-78292032 | Msa0705540:intron | 35.0% |
| AATCAAGCAAAAGGTTGAAC+AGG | + | chr4_4:78292055-78292074 | None:intergenic | 35.0% | |
| TTGAACCTTCGCTCATTTAA+AGG | - | chr4_4:78292189-78292208 | Msa0705540:intron | 35.0% | |
| AGGATGACATATTCATGAGA+AGG | - | chr4_4:78292209-78292228 | Msa0705540:intron | 35.0% | |
| ! | TTTTGCAGCATACCTCAAAA+AGG | + | chr4_4:78292394-78292413 | None:intergenic | 35.0% |
| TCACACAAATAAGGACCAAA+AGG | + | chr4_4:78292494-78292513 | None:intergenic | 35.0% | |
| CCTCAAATCTCACACAAATA+AGG | + | chr4_4:78292503-78292522 | None:intergenic | 35.0% | |
| ! | CCTTATTTGTGTGAGATTTG+AGG | - | chr4_4:78292500-78292519 | Msa0705540:CDS | 35.0% |
| ! | CAATTTCCTTATGCTTTGGA+AGG | - | chr4_4:78292558-78292577 | Msa0705540:intron | 35.0% |
| !! | TTTTTCCTTTGTTTCCTTGG+AGG | + | chr4_4:78292712-78292731 | None:intergenic | 35.0% |
| ! | TCTGATTCGACCATTCAAAT+GGG | + | chr4_4:78293034-78293053 | None:intergenic | 35.0% |
| CCTTTAACCTTATTGGAAGA+TGG | + | chr4_4:78293063-78293082 | None:intergenic | 35.0% | |
| CCATCTTCCAATAAGGTTAA+AGG | - | chr4_4:78293060-78293079 | Msa0705540:intron | 35.0% | |
| TGATAATATTGACACTGCTG+TGG | - | chr4_4:78293300-78293319 | Msa0705540:intron | 35.0% | |
| CCTTTAACCTTACTGGAAAA+GGG | + | chr4_4:78293361-78293380 | None:intergenic | 35.0% | |
| ACCTTTAACCTTACTGGAAA+AGG | + | chr4_4:78293362-78293381 | None:intergenic | 35.0% | |
| CATATGTTCCTTGATTGTTG+GGG | + | chr4_4:78293587-78293606 | None:intergenic | 35.0% | |
| GCATATGTTCCTTGATTGTT+GGG | + | chr4_4:78293588-78293607 | None:intergenic | 35.0% | |
| TGCATATGTTCCTTGATTGT+TGG | + | chr4_4:78293589-78293608 | None:intergenic | 35.0% | |
| GTTCAGGGAAAATCATAATC+AGG | + | chr4_4:78293616-78293635 | None:intergenic | 35.0% | |
| TGACGCATAACTAATAGTAG+GGG | + | chr4_4:78293653-78293672 | None:intergenic | 35.0% | |
| CATGACGCATAACTAATAGT+AGG | + | chr4_4:78293655-78293674 | None:intergenic | 35.0% | |
| TTAACTCGAGCTATGCTTTA+CGG | + | chr4_4:78293681-78293700 | None:intergenic | 35.0% | |
| ! | GTTTTCTGTGTAACATGGTT+GGG | - | chr4_4:78293809-78293828 | Msa0705540:intron | 35.0% |
| TTGGATGATGCTGGAATTAA+TGG | - | chr4_4:78293951-78293970 | Msa0705540:CDS | 35.0% | |
| GTGGATGTATTACTGAAGTT+TGG | + | chr4_4:78293992-78294011 | None:intergenic | 35.0% | |
| ! | TACGATTTATGACGTTTTGC+TGG | + | chr4_4:78294014-78294033 | None:intergenic | 35.0% |
| GAATGTATAATGTCTGATGC+AGG | - | chr4_4:78294367-78294386 | Msa0705540:intron | 35.0% | |
| AAAGACAGTGGCAAACAAAT+TGG | + | chr4_4:78294489-78294508 | None:intergenic | 35.0% | |
| ACTGCAAAAACAAAAGACAG+TGG | + | chr4_4:78294501-78294520 | None:intergenic | 35.0% | |
| !! | GTTTTAGACATGCTAGAACA+CGG | - | chr4_4:78294631-78294650 | Msa0705540:intron | 35.0% |
| ! | TTTTAGACATGCTAGAACAC+GGG | - | chr4_4:78294632-78294651 | Msa0705540:intron | 35.0% |
| ! | TAGAACACGGGTATGTATTT+TGG | - | chr4_4:78294644-78294663 | Msa0705540:intron | 35.0% |
| TTTGCAACTTTGGGTAAAGA+TGG | + | chr4_4:78294815-78294834 | None:intergenic | 35.0% | |
| GTATTGGAGATTTGCAACTT+TGG | + | chr4_4:78294825-78294844 | None:intergenic | 35.0% | |
| !! | GTTTTAGACATGCTAGAACA+CGG | - | chr4_4:78294631-78294650 | Msa0705540:intron | 35.0% |
| GAATGCAGAACAACTTGAAT+CGG | - | chr4_4:78295029-78295048 | Msa0705540:intron | 35.0% | |
| ACGTTCGCATGTATCAAATT+TGG | - | chr4_4:78295157-78295176 | Msa0705540:intron | 35.0% | |
| ! | ACATAGAGTAAGCATTGCAA+TGG | + | chr4_4:78295337-78295356 | None:intergenic | 35.0% |
| TTTCTGATTCCATTTAGGGA+AGG | - | chr4_4:78295409-78295428 | Msa0705540:intron | 35.0% | |
| ATTCCATTTAGGGAAGGATT+TGG | - | chr4_4:78295415-78295434 | Msa0705540:intron | 35.0% | |
| ATGCGGTCCATAAAAATGTT+GGG | - | chr4_4:78295465-78295484 | Msa0705540:intron | 35.0% | |
| ! | GGAATTATGTACTGATGTTG+CGG | - | chr4_4:78295765-78295784 | Msa0705540:intron | 35.0% |
| ! | GAATTATGTACTGATGTTGC+GGG | - | chr4_4:78295766-78295785 | Msa0705540:intron | 35.0% |
| !!! | GAACTTAGCTTTTTTCTGGT+GGG | + | chr4_4:78296096-78296115 | None:intergenic | 35.0% |
| !!! | AGAACTTAGCTTTTTTCTGG+TGG | + | chr4_4:78296097-78296116 | None:intergenic | 35.0% |
| !! | TTTTGAAAAACAGAGCCACT+CGG | - | chr4_4:78296146-78296165 | Msa0705540:intron | 35.0% |
| ! | AGGAACATGGTCAGATTTTT+GGG | + | chr4_4:78296187-78296206 | None:intergenic | 35.0% |
| ! | AAGAGGCAATTTTCTTCCAA+AGG | - | chr4_4:78296323-78296342 | Msa0705540:intron | 35.0% |
| CTTGCAAAAGAATAAGCCTT+TGG | + | chr4_4:78296342-78296361 | None:intergenic | 35.0% | |
| ! | TATTCTTTTGCAAGCAACAC+AGG | - | chr4_4:78296348-78296367 | Msa0705540:intron | 35.0% |
| ATACTTAGTCACATGTGTCA+AGG | - | chr4_4:78296409-78296428 | Msa0705540:intron | 35.0% | |
| AATGTCTCCAACTATGTGAT+TGG | - | chr4_4:78296482-78296501 | Msa0705540:exon | 35.0% | |
| CAAGAAGCAACCATAATTGT+TGG | - | chr4_4:78296575-78296594 | Msa0705540:intron | 35.0% | |
| ACAACAAGAAACACATACTC+TGG | + | chr4_4:78296679-78296698 | None:intergenic | 35.0% | |
| TACGGGAATAAGTTTCCATA+AGG | - | chr4_4:78296740-78296759 | Msa0705540:five_prime_UTR | 35.0% | |
| ! | TTCCTGTTATTTAGTACCCT+TGG | - | chr4_4:78296825-78296844 | Msa0705540:intron | 35.0% |
| ! | TGTTATTTAGTACCCTTGGT+GGG | - | chr4_4:78296829-78296848 | Msa0705540:intron | 35.0% |
| TGCGGGAATTGGAATTGAAT+TGG | + | chr4_4:78290172-78290191 | None:intergenic | 40.0% | |
| GAAAAAGAGTGGAGAATTGC+GGG | + | chr4_4:78290189-78290208 | None:intergenic | 40.0% | |
| GAAGAACATTACCTCGGATT+CGG | + | chr4_4:78290249-78290268 | None:intergenic | 40.0% | |
| TCGGAAAGGATCGTAGAAAA+CGG | + | chr4_4:78290271-78290290 | None:intergenic | 40.0% | |
| AACAACGAGAAAGACGAATG+CGG | + | chr4_4:78290339-78290358 | None:intergenic | 40.0% | |
| AGATGAACACACCATTGAGA+GGG | + | chr4_4:78290425-78290444 | None:intergenic | 40.0% | |
| ATGGTGTGTTCATCTGGAAA+TGG | - | chr4_4:78290430-78290449 | Msa0705540:intron | 40.0% | |
| TGGTGTGTTCATCTGGAAAT+GGG | - | chr4_4:78290431-78290450 | Msa0705540:intron | 40.0% | |
| TTCATCTGGAAATGGGAGAA+TGG | - | chr4_4:78290438-78290457 | Msa0705540:intron | 40.0% | |
| AGTTTGAGAGAAACTTCCAG+CGG | + | chr4_4:78290485-78290504 | None:intergenic | 40.0% | |
| AGTTTCTCTCAAACTGTTCC+AGG | - | chr4_4:78290490-78290509 | Msa0705540:intron | 40.0% | |
| TCTAAGAAGTAGAATGGCGT+TGG | + | chr4_4:78290521-78290540 | None:intergenic | 40.0% | |
| ! | GCAAATTTGCTCAGTGAAGA+AGG | - | chr4_4:78290745-78290764 | Msa0705540:CDS | 40.0% |
| ! | TTAGGGTCCTTTTGCAATTG+AGG | + | chr4_4:78291049-78291068 | None:intergenic | 40.0% |
| TACCAGTGTGAAACTGCTTA+TGG | - | chr4_4:78291133-78291152 | Msa0705540:CDS | 40.0% | |
| AACCATAAGCAGTTTCACAC+TGG | + | chr4_4:78291138-78291157 | None:intergenic | 40.0% | |
| ACTGCCTTTGATACTGCTTA+TGG | - | chr4_4:78291211-78291230 | Msa0705540:CDS | 40.0% | |
| GAAAAACTTACCAGCTGCAA+GGG | + | chr4_4:78291359-78291378 | None:intergenic | 40.0% | |
| AATGCTAACTGGTGTCTTAG+GGG | + | chr4_4:78291557-78291576 | None:intergenic | 40.0% | |
| CTAGTATTAGTGTGCTTCCA+AGG | - | chr4_4:78291581-78291600 | Msa0705540:intron | 40.0% | |
| CAACATTTCACATGGCTTAC+CGG | - | chr4_4:78291613-78291632 | Msa0705540:intron | 40.0% | |
| CATATGCAGTAACGAAAGGA+TGG | + | chr4_4:78291671-78291690 | None:intergenic | 40.0% | |
| CATCCTTTCGTTACTGCATA+TGG | - | chr4_4:78291669-78291688 | Msa0705540:intron | 40.0% | |
| CTACCATATGCAGTAACGAA+AGG | + | chr4_4:78291675-78291694 | None:intergenic | 40.0% | |
| CTTTCGTTACTGCATATGGT+AGG | - | chr4_4:78291673-78291692 | Msa0705540:intron | 40.0% | |
| CTTCAACTCATACATTGCAC+AGG | + | chr4_4:78291843-78291862 | None:intergenic | 40.0% | |
| TAAGCAACACTCAGCTTTAC+AGG | + | chr4_4:78292116-78292135 | None:intergenic | 40.0% | |
| GTCATCCTTTAAATGAGCGA+AGG | + | chr4_4:78292197-78292216 | None:intergenic | 40.0% | |
| AAATTGCAAGAGACCAGTCA+CGG | - | chr4_4:78292412-78292431 | Msa0705540:intron | 40.0% | |
| ! | GCTTACAACCATTTTGAACG+TGG | - | chr4_4:78292522-78292541 | Msa0705540:intron | 40.0% |
| AGACAAAGCCACGTTCAAAA+TGG | + | chr4_4:78292533-78292552 | None:intergenic | 40.0% | |
| TTAGTGCCTTCCAAAGCATA+AGG | + | chr4_4:78292567-78292586 | None:intergenic | 40.0% | |
| ! | CAAACTTGCTTGAAGCTTGA+TGG | - | chr4_4:78292667-78292686 | Msa0705540:intron | 40.0% |
| TTGAAGCTTGATGGAAACAC+AGG | - | chr4_4:78292676-78292695 | Msa0705540:intron | 40.0% | |
| TGAAGCTTGATGGAAACACA+GGG | - | chr4_4:78292677-78292696 | Msa0705540:intron | 40.0% | |
| TTGATGGAAACACAGGGAAT+AGG | - | chr4_4:78292683-78292702 | Msa0705540:intron | 40.0% | |
| ! | CTCTGATTCGACCATTCAAA+TGG | + | chr4_4:78293035-78293054 | None:intergenic | 40.0% |
| TTTGAATGGTCGAATCAGAG+TGG | - | chr4_4:78293035-78293054 | Msa0705540:intron | 40.0% | |
| CTTGTTTGTGAGGGGTTATT+AGG | + | chr4_4:78293243-78293262 | None:intergenic | 40.0% | |
| CGGATTCGACTGTTCAAATT+GGG | + | chr4_4:78293331-78293350 | None:intergenic | 40.0% | |
| TCGGATTCGACTGTTCAAAT+TGG | + | chr4_4:78293332-78293351 | None:intergenic | 40.0% | |
| ! | CCCTTTTCCAGTAAGGTTAA+AGG | - | chr4_4:78293358-78293377 | Msa0705540:intron | 40.0% |
| !! | GCGGATTCTTTAACTTGTGT+TGG | - | chr4_4:78293542-78293561 | Msa0705540:intron | 40.0% |
| CATAACTAATAGTAGGGGAG+AGG | + | chr4_4:78293648-78293667 | None:intergenic | 40.0% | |
| TAACTCGAGCTATGCTTTAC+GGG | + | chr4_4:78293680-78293699 | None:intergenic | 40.0% | |
| ! | CACCTATTTTCTCTGTAACG+TGG | - | chr4_4:78293782-78293801 | Msa0705540:intron | 40.0% |
| ACCATGTTACACAGAAAACG+AGG | + | chr4_4:78293808-78293827 | None:intergenic | 40.0% | |
| ! | CGTTTTCTGTGTAACATGGT+TGG | - | chr4_4:78293808-78293827 | Msa0705540:intron | 40.0% |
| ! | CGTGTCTCACAATTGTTTTC+AGG | - | chr4_4:78293832-78293851 | Msa0705540:intron | 40.0% |
| GATGATGCTGGAATTAATGG+TGG | - | chr4_4:78293954-78293973 | Msa0705540:CDS | 40.0% | |
| ! | GATTTATGACGTTTTGCTGG+TGG | + | chr4_4:78294011-78294030 | None:intergenic | 40.0% |
| GTGAAAAGAGAGAAGTGAAG+GGG | + | chr4_4:78294110-78294129 | None:intergenic | 40.0% | |
| GGTGAAAAGAGAGAAGTGAA+GGG | + | chr4_4:78294111-78294130 | None:intergenic | 40.0% | |
| AGGTGAAAAGAGAGAAGTGA+AGG | + | chr4_4:78294112-78294131 | None:intergenic | 40.0% | |
| AACTTTGGGTAAAGATGGAG+AGG | + | chr4_4:78294810-78294829 | None:intergenic | 40.0% | |
| AACTTTGAGCAAGCATGAAG+AGG | - | chr4_4:78294977-78294996 | Msa0705540:intron | 40.0% | |
| !!! | GTCTTTTGGAGTTTGGATAC+TGG | - | chr4_4:78295360-78295379 | Msa0705540:intron | 40.0% |
| TAATCGGGTTATTCTTTCCC+TGG | + | chr4_4:78295386-78295405 | None:intergenic | 40.0% | |
| CAACCAAATCCTTCCCTAAA+TGG | + | chr4_4:78295421-78295440 | None:intergenic | 40.0% | |
| GATGCGGTCCATAAAAATGT+TGG | - | chr4_4:78295464-78295483 | Msa0705540:intron | 40.0% | |
| ! | TCTCATTCTCTCTCCCTTTT+TGG | - | chr4_4:78295609-78295628 | Msa0705540:intron | 40.0% |
| !!! | TCTCTCTCCCTTTTTGGTTT+TGG | - | chr4_4:78295615-78295634 | Msa0705540:intron | 40.0% |
| ! | GTACTTTGAGAACTTGAGTG+AGG | - | chr4_4:78295744-78295763 | Msa0705540:intron | 40.0% |
| TGCATTGCAAGATTCATCTC+TGG | - | chr4_4:78295816-78295835 | Msa0705540:intron | 40.0% | |
| GCATTGCAAGATTCATCTCT+GGG | - | chr4_4:78295817-78295836 | Msa0705540:intron | 40.0% | |
| CATTGCAAGATTCATCTCTG+GGG | - | chr4_4:78295818-78295837 | Msa0705540:intron | 40.0% | |
| ATTGCAAGATTCATCTCTGG+GGG | - | chr4_4:78295819-78295838 | Msa0705540:intron | 40.0% | |
| GGACCCTTCATTTCAACAAA+TGG | - | chr4_4:78295840-78295859 | Msa0705540:intron | 40.0% | |
| AATGGACAATGTCCTCAACA+AGG | - | chr4_4:78295858-78295877 | Msa0705540:intron | 40.0% | |
| ATTGACATACCTCCTTGTTG+AGG | + | chr4_4:78295873-78295892 | None:intergenic | 40.0% | |
| !! | CTCTGTATGTTGTTGGCTTT+AGG | - | chr4_4:78296011-78296030 | Msa0705540:intron | 40.0% |
| !!! | TTAGCTTTTTTCTGGTGGGA+AGG | + | chr4_4:78296092-78296111 | None:intergenic | 40.0% |
| ! | CAGGAACATGGTCAGATTTT+TGG | + | chr4_4:78296188-78296207 | None:intergenic | 40.0% |
| ! | CAAACTTCTGAGCTTTTTGC+AGG | + | chr4_4:78296207-78296226 | None:intergenic | 40.0% |
| ! | GAAGTTTGCTTGCTTAAAGC+AGG | - | chr4_4:78296219-78296238 | Msa0705540:CDS | 40.0% |
| GTCACTACCAATCACATAGT+TGG | + | chr4_4:78296492-78296511 | None:intergenic | 40.0% | |
| ACGCATGTCGTATCATATCA+GGG | + | chr4_4:78296538-78296557 | None:intergenic | 40.0% | |
| AACGCATGTCGTATCATATC+AGG | + | chr4_4:78296539-78296558 | None:intergenic | 40.0% | |
| ! | TGTTTTGTAGGAAATCCCCT+AGG | - | chr4_4:78296776-78296795 | Msa0705540:intron | 40.0% |
| ! | TGTTTGTTGCATGGTTCCTA+GGG | + | chr4_4:78296795-78296814 | None:intergenic | 40.0% |
| ! | TTGTTTGTTGCATGGTTCCT+AGG | + | chr4_4:78296796-78296815 | None:intergenic | 40.0% |
| GGAACCATGCAACAAACAAA+AGG | - | chr4_4:78296797-78296816 | Msa0705540:intron | 40.0% | |
| !! | ACTGCCTTTTGTTTGTTGCA+TGG | + | chr4_4:78296804-78296823 | None:intergenic | 40.0% |
| !! | CACCAAGGGTACTAAATAAC+AGG | + | chr4_4:78296830-78296849 | None:intergenic | 40.0% |
| ! | CTGTTATTTAGTACCCTTGG+TGG | - | chr4_4:78296828-78296847 | Msa0705540:intron | 40.0% |
| !! | TTTTGGTCAGGTGAAAGTAC+AGG | - | chr4_4:78296856-78296875 | Msa0705540:intron | 40.0% |
| TAAATCCTACCTCAGTGTAC+TGG | + | chr4_4:78296885-78296904 | None:intergenic | 40.0% | |
| CTATTTATTGCCTTCTCCGG+CGG | - | chr4_4:78289985-78290004 | Msa0705540:three_prime_UTR | 45.0% | |
| ! | TTTTTCTCTCTCTTCTCCGC+CGG | + | chr4_4:78290004-78290023 | None:intergenic | 45.0% |
| ACGAGAACGCTGAAAAAGAG+TGG | + | chr4_4:78290200-78290219 | None:intergenic | 45.0% | |
| CAGATGAACACACCATTGAG+AGG | + | chr4_4:78290426-78290445 | None:intergenic | 45.0% | |
| CTCTCAATGGTGTGTTCATC+TGG | - | chr4_4:78290424-78290443 | Msa0705540:intron | 45.0% | |
| ATCTGGAAATGGGAGAATGG+AGG | - | chr4_4:78290441-78290460 | Msa0705540:intron | 45.0% | |
| !! | AAGAAGGTCGTTTTGCTCTC+TGG | - | chr4_4:78290761-78290780 | Msa0705540:intron | 45.0% |
| !!! | TTGTTTTTTATGGGGGTGGG+TGG | - | chr4_4:78290954-78290973 | Msa0705540:intron | 45.0% |
| TCAATCCACTTCAGAGGAGT+GGG | - | chr4_4:78291090-78291109 | Msa0705540:CDS | 45.0% | |
| GGAAAAACTTACCAGCTGCA+AGG | + | chr4_4:78291360-78291379 | None:intergenic | 45.0% | |
| !! | ATGTTAACTGGGCACTGGTT+TGG | - | chr4_4:78291439-78291458 | Msa0705540:CDS | 45.0% |
| !! | CTGAGTGTTGCTTATGTGCA+TGG | - | chr4_4:78292122-78292141 | Msa0705540:intron | 45.0% |
| GGAAACCTCCAAGGAAACAA+AGG | - | chr4_4:78292704-78292723 | Msa0705540:intron | 45.0% | |
| CTTGTTTGTGAGGGGTTATG+AGG | + | chr4_4:78292945-78292964 | None:intergenic | 45.0% | |
| !! | TGCAGTAGCTTGTTTGTGAG+GGG | + | chr4_4:78292953-78292972 | None:intergenic | 45.0% |
| !! | CTGCAGTAGCTTGTTTGTGA+GGG | + | chr4_4:78292954-78292973 | None:intergenic | 45.0% |
| !! | ACTGCAGTAGCTTGTTTGTG+AGG | + | chr4_4:78292955-78292974 | None:intergenic | 45.0% |
| GCAGAGAAGATCTGAGTCTT+TGG | - | chr4_4:78292981-78293000 | Msa0705540:intron | 45.0% | |
| GGGTCACAATCCCATTTGAA+TGG | - | chr4_4:78293021-78293040 | Msa0705540:intron | 45.0% | |
| AGTGGCTCCATCTTCCAATA+AGG | - | chr4_4:78293053-78293072 | Msa0705540:intron | 45.0% | |
| TCAAGAGAGTCAGACCTTCT+CGG | + | chr4_4:78293283-78293302 | None:intergenic | 45.0% | |
| TACTGGAAAAGGGAGCAACT+CGG | + | chr4_4:78293351-78293370 | None:intergenic | 45.0% | |
| ! | AGTTGCTCCCTTTTCCAGTA+AGG | - | chr4_4:78293351-78293370 | Msa0705540:intron | 45.0% |
| ACCTCTTTCCCCAACAATCA+AGG | - | chr4_4:78293576-78293595 | Msa0705540:CDS | 45.0% | |
| TCCTTGATTGTTGGGGAAAG+AGG | + | chr4_4:78293580-78293599 | None:intergenic | 45.0% | |
| !! | GAGAGGCTGATTTGAGTTCA+GGG | + | chr4_4:78293631-78293650 | None:intergenic | 45.0% |
| AACTCGAGCTATGCTTTACG+GGG | + | chr4_4:78293679-78293698 | None:intergenic | 45.0% | |
| ! | CAATTCGAGTTTACGGCACT+AGG | - | chr4_4:78293710-78293729 | Msa0705540:intron | 45.0% |
| GGCCACGTTACAGAGAAAAT+AGG | + | chr4_4:78293787-78293806 | None:intergenic | 45.0% | |
| ! | GCCTCGTTTTCTGTGTAACA+TGG | - | chr4_4:78293804-78293823 | Msa0705540:intron | 45.0% |
| GCATCTATGTTGGATGATGC+TGG | - | chr4_4:78293942-78293961 | Msa0705540:CDS | 45.0% | |
| CACATCTTGATGTACCAGAC+AGG | - | chr4_4:78294400-78294419 | Msa0705540:intron | 45.0% | |
| !! | GTCTTTCTGAGCTTTTTGGC+CGG | - | chr4_4:78295193-78295212 | Msa0705540:intron | 45.0% |
| !! | CGCATCTCTATGTTCTGGAA+CGG | + | chr4_4:78295450-78295469 | None:intergenic | 45.0% |
| CGTTCCAGAACATAGAGATG+CGG | - | chr4_4:78295448-78295467 | Msa0705540:intron | 45.0% | |
| GGTCCATAAAAATGTTGGGC+AGG | - | chr4_4:78295469-78295488 | Msa0705540:intron | 45.0% | |
| ! | GGACCTGCCCAACATTTTTA+TGG | + | chr4_4:78295475-78295494 | None:intergenic | 45.0% |
| !!! | TTTTTTCTGGTGGGAAGGAG+GGG | + | chr4_4:78296087-78296106 | None:intergenic | 45.0% |
| !!! | CTTTTTTCTGGTGGGAAGGA+GGG | + | chr4_4:78296088-78296107 | None:intergenic | 45.0% |
| ! | CTGAGCTTTTTGCAGGAACA+TGG | + | chr4_4:78296200-78296219 | None:intergenic | 45.0% |
| GTTTGCTTGCTTAAAGCAGG+AGG | - | chr4_4:78296222-78296241 | Msa0705540:CDS | 45.0% | |
| TGATCTGACAAGCCAACACT+AGG | + | chr4_4:78296252-78296271 | None:intergenic | 45.0% | |
| AGGTCTGCTGCTACTAATGT+TGG | - | chr4_4:78296294-78296313 | Msa0705540:intron | 45.0% | |
| ! | GTTTGTTGCATGGTTCCTAG+GGG | + | chr4_4:78296794-78296813 | None:intergenic | 45.0% |
| ! | TACCCTTGGTGGGAAGTTTT+TGG | - | chr4_4:78296839-78296858 | Msa0705540:intron | 45.0% |
| GACCAAAAACTTCCCACCAA+GGG | + | chr4_4:78296844-78296863 | None:intergenic | 45.0% | |
| TGACCAAAAACTTCCCACCA+AGG | + | chr4_4:78296845-78296864 | None:intergenic | 45.0% | |
| !!! | TTGGTGGGAAGTTTTTGGTC+AGG | - | chr4_4:78296844-78296863 | Msa0705540:intron | 45.0% |
| TACAGGTATCCAGTACACTG+AGG | - | chr4_4:78296873-78296892 | Msa0705540:intron | 45.0% | |
| !!! | TTAGTTTTATTAATTATTTA+GGG | + | chr4_4:78291066-78291085 | None:intergenic | 5.0% |
| !!! | TTTAGTTTTATTAATTATTT+AGG | + | chr4_4:78291067-78291086 | None:intergenic | 5.0% |
| !!! | TTATAAATAATAAAGTATTT+GGG | - | chr4_4:78294186-78294205 | Msa0705540:intron | 5.0% |
| CGCCGGAGAAGGCAATAAAT+AGG | + | chr4_4:78289987-78290006 | None:intergenic | 50.0% | |
| GAGTGGAGAATTGCGGGAAT+TGG | + | chr4_4:78290183-78290202 | None:intergenic | 50.0% | |
| ACCTCGGATTCGGAACGAAA+GGG | + | chr4_4:78290239-78290258 | None:intergenic | 50.0% | |
| TACCTCGGATTCGGAACGAA+AGG | + | chr4_4:78290240-78290259 | None:intergenic | 50.0% | |
| GGAGAATGGAGGTCATGACA+AGG | - | chr4_4:78290452-78290471 | Msa0705540:intron | 50.0% | |
| ! | ATGACAAGGCTTTTAGCCGC+TGG | - | chr4_4:78290466-78290485 | Msa0705540:intron | 50.0% |
| TTTATGGGGGTGGGTGGTTT+AGG | - | chr4_4:78290960-78290979 | Msa0705540:intron | 50.0% | |
| GGGTGGGTGGTTTAGGAATT+AGG | - | chr4_4:78290967-78290986 | Msa0705540:intron | 50.0% | |
| GTCAATCCACTTCAGAGGAG+TGG | - | chr4_4:78291089-78291108 | Msa0705540:CDS | 50.0% | |
| CAATCCACTTCAGAGGAGTG+GGG | - | chr4_4:78291091-78291110 | Msa0705540:CDS | 50.0% | |
| AATCCACTTCAGAGGAGTGG+GGG | - | chr4_4:78291092-78291111 | Msa0705540:CDS | 50.0% | |
| AGCTGCAAGGGATCAGTCAT+GGG | + | chr4_4:78291347-78291366 | None:intergenic | 50.0% | |
| !! | ACTGGGCACTGGTTTGGTTA+AGG | - | chr4_4:78291445-78291464 | Msa0705540:CDS | 50.0% |
| !! | AGCCAATTTGCTGCTCATGC+AGG | - | chr4_4:78292437-78292456 | Msa0705540:intron | 50.0% |
| GACCTGCATGAGCAGCAAAT+TGG | + | chr4_4:78292442-78292461 | None:intergenic | 50.0% | |
| ! | ATTTGCTGCTCATGCAGGTC+TGG | - | chr4_4:78292442-78292461 | Msa0705540:intron | 50.0% |
| CAGGGAATAGGAAACCTCCA+AGG | - | chr4_4:78292695-78292714 | Msa0705540:intron | 50.0% | |
| !! | TGCGGTAGCTTGTTTGTGAG+GGG | + | chr4_4:78293251-78293270 | None:intergenic | 50.0% |
| !! | CTGCGGTAGCTTGTTTGTGA+GGG | + | chr4_4:78293252-78293271 | None:intergenic | 50.0% |
| !! | ACTGCGGTAGCTTGTTTGTG+AGG | + | chr4_4:78293253-78293272 | None:intergenic | 50.0% |
| CAAACAAGCTACCGCAGTTG+TGG | - | chr4_4:78293255-78293274 | Msa0705540:intron | 50.0% | |
| GCTGACTAAGTTCACTCGTG+CGG | - | chr4_4:78293523-78293542 | Msa0705540:intron | 50.0% | |
| !! | GGAGAGGCTGATTTGAGTTC+AGG | + | chr4_4:78293632-78293651 | None:intergenic | 50.0% |
| ACTCGAGCTATGCTTTACGG+GGG | + | chr4_4:78293678-78293697 | None:intergenic | 50.0% | |
| CGTAGATGCGGCATCTATGT+TGG | - | chr4_4:78293932-78293951 | Msa0705540:CDS | 50.0% | |
| CTTGATGTACCAGACAGGCA+TGG | - | chr4_4:78294405-78294424 | Msa0705540:intron | 50.0% | |
| GCATGTGAGCGTAGACACAT+TGG | - | chr4_4:78294946-78294965 | Msa0705540:intron | 50.0% | |
| TTGGAGTTTGGATACTGGCC+AGG | - | chr4_4:78295365-78295384 | Msa0705540:intron | 50.0% | |
| TGGAGTTTGGATACTGGCCA+GGG | - | chr4_4:78295366-78295385 | Msa0705540:intron | 50.0% | |
| TGGACCGCATCTCTATGTTC+TGG | + | chr4_4:78295455-78295474 | None:intergenic | 50.0% | |
| CAGCAGCACGTGATGACAAA+TGG | - | chr4_4:78295503-78295522 | Msa0705540:intron | 50.0% | |
| ! | ATCTTTGTGGCAAGAGGTGC+AGG | + | chr4_4:78295676-78295695 | None:intergenic | 50.0% |
| AATAGCAGCACGCAATCGGT+TGG | + | chr4_4:78295716-78295735 | None:intergenic | 50.0% | |
| GACGAATAGCAGCACGCAAT+CGG | + | chr4_4:78295720-78295739 | None:intergenic | 50.0% | |
| GCGGGTCAAAAGACATCACT+TGG | - | chr4_4:78295784-78295803 | Msa0705540:intron | 50.0% | |
| GGACAATGTCCTCAACAAGG+AGG | - | chr4_4:78295861-78295880 | Msa0705540:intron | 50.0% | |
| !!! | GCTTTTTTCTGGTGGGAAGG+AGG | + | chr4_4:78296089-78296108 | None:intergenic | 50.0% |
| CCACTCGGCAATGTTGTACT+CGG | - | chr4_4:78296161-78296180 | Msa0705540:CDS | 50.0% | |
| GGTATCCAGTACACTGAGGT+AGG | - | chr4_4:78296877-78296896 | Msa0705540:intron | 50.0% | |
| TCCCTTTCGTTCCGAATCCG+AGG | - | chr4_4:78290235-78290254 | Msa0705540:intron | 55.0% | |
| !! | AGAATGGCGTTGGTGCTACC+TGG | + | chr4_4:78290511-78290530 | None:intergenic | 55.0% |
| !! | CTCAGCTGCTGACTTCTGTC+TGG | + | chr4_4:78290692-78290711 | None:intergenic | 55.0% |
| CAGCTGCAAGGGATCAGTCA+TGG | + | chr4_4:78291348-78291367 | None:intergenic | 55.0% | |
| CATGACTGATCCCTTGCAGC+TGG | - | chr4_4:78291346-78291365 | Msa0705540:intron | 55.0% | |
| GGGTCATGTTAACTGGGCAC+TGG | - | chr4_4:78291434-78291453 | Msa0705540:CDS | 55.0% | |
| GCAAATTGGCTGTCCGTGAC+TGG | + | chr4_4:78292428-78292447 | None:intergenic | 55.0% | |
| GACTCTGTTCCATGCCTGTC+TGG | + | chr4_4:78294417-78294436 | None:intergenic | 55.0% | |
| ! | TCACGTGCTGCTGCTGCATA+TGG | + | chr4_4:78295496-78295515 | None:intergenic | 55.0% |
| CCGAGTACAACATTGCCGAG+TGG | + | chr4_4:78296164-78296183 | None:intergenic | 55.0% | |
| TCTCTCTTCTCCGCCGGAGA+AGG | + | chr4_4:78289998-78290017 | None:intergenic | 60.0% | |
| GCGTTCTCGTCGCATTCTCG+CGG | - | chr4_4:78290210-78290229 | Msa0705540:intron | 60.0% | |
| CACTTCAGAGGAGTGGGGGT+GGG | - | chr4_4:78291096-78291115 | Msa0705540:CDS | 60.0% | |
| ACTTCAGAGGAGTGGGGGTG+GGG | - | chr4_4:78291097-78291116 | Msa0705540:CDS | 60.0% | |
| TGCTGCTCATGCAGGTCTGG+TGG | - | chr4_4:78292445-78292464 | Msa0705540:intron | 60.0% | |
| CCTTCTCGGCTCCACAACTG+CGG | + | chr4_4:78293269-78293288 | None:intergenic | 60.0% | |
| TTCTGGTGGGAAGGAGGGGA+GGG | + | chr4_4:78296083-78296102 | None:intergenic | 60.0% | |
| ! | TTTCTGGTGGGAAGGAGGGG+AGG | + | chr4_4:78296084-78296103 | None:intergenic | 60.0% |
| ! | GCAGGAGGTGTGCCTAGTGT+TGG | - | chr4_4:78296237-78296256 | Msa0705540:intron | 60.0% |
| ! | CCACCCCCACTCCTCTGAAG+TGG | + | chr4_4:78291098-78291117 | None:intergenic | 65.0% |
| CCACTTCAGAGGAGTGGGGG+TGG | - | chr4_4:78291095-78291114 | Msa0705540:CDS | 65.0% | |
| CTTCAGAGGAGTGGGGGTGG+GGG | - | chr4_4:78291098-78291117 | Msa0705540:CDS | 65.0% | |
| TTCAGAGGAGTGGGGGTGGG+GGG | - | chr4_4:78291099-78291118 | Msa0705540:CDS | 65.0% | |
| CCGCAGTTGTGGAGCCGAGA+AGG | - | chr4_4:78293266-78293285 | Msa0705540:intron | 65.0% | |
| GGAAGGAGGGGAGGGATGGC+AGG | + | chr4_4:78296075-78296094 | None:intergenic | 70.0% | |
| GGTGGGAAGGAGGGGAGGGA+TGG | + | chr4_4:78296079-78296098 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 78289904 | 78297023 | 78289904 | ID=Msa0705540;Name=Msa0705540 |
| chr4_4 | mRNA | 78289904 | 78297023 | 78289904 | ID=Msa0705540-mRNA-1;Parent=Msa0705540;Name=Msa0705540-mRNA-1;_AED=0.21;_eAED=0.21;_QI=279|0.84|0.85|1|0.84|0.78|14|185|466 |
| chr4_4 | exon | 78289904 | 78290141 | 78289904 | ID=Msa0705540-mRNA-1:exon:24998;Parent=Msa0705540-mRNA-1 |
| chr4_4 | exon | 78290558 | 78290768 | 78290558 | ID=Msa0705540-mRNA-1:exon:24997;Parent=Msa0705540-mRNA-1 |
| chr4_4 | exon | 78291045 | 78291259 | 78291045 | ID=Msa0705540-mRNA-1:exon:24996;Parent=Msa0705540-mRNA-1 |
| chr4_4 | exon | 78291403 | 78291501 | 78291403 | ID=Msa0705540-mRNA-1:exon:24995;Parent=Msa0705540-mRNA-1 |
| chr4_4 | exon | 78292450 | 78292538 | 78292450 | ID=Msa0705540-mRNA-1:exon:24994;Parent=Msa0705540-mRNA-1 |
| chr4_4 | exon | 78292897 | 78292990 | 78292897 | ID=Msa0705540-mRNA-1:exon:24993;Parent=Msa0705540-mRNA-1 |
| chr4_4 | exon | 78293548 | 78293655 | 78293548 | ID=Msa0705540-mRNA-1:exon:24992;Parent=Msa0705540-mRNA-1 |
| chr4_4 | exon | 78293846 | 78294009 | 78293846 | ID=Msa0705540-mRNA-1:exon:24991;Parent=Msa0705540-mRNA-1 |
| chr4_4 | exon | 78294196 | 78294347 | 78294196 | ID=Msa0705540-mRNA-1:exon:24990;Parent=Msa0705540-mRNA-1 |
| chr4_4 | exon | 78295560 | 78295606 | 78295560 | ID=Msa0705540-mRNA-1:exon:24989;Parent=Msa0705540-mRNA-1 |
| chr4_4 | exon | 78296161 | 78296247 | 78296161 | ID=Msa0705540-mRNA-1:exon:24988;Parent=Msa0705540-mRNA-1 |
| chr4_4 | exon | 78296416 | 78296521 | 78296416 | ID=Msa0705540-mRNA-1:exon:24987;Parent=Msa0705540-mRNA-1 |
| chr4_4 | exon | 78296671 | 78296784 | 78296671 | ID=Msa0705540-mRNA-1:exon:24986;Parent=Msa0705540-mRNA-1 |
| chr4_4 | exon | 78296883 | 78297023 | 78296883 | ID=Msa0705540-mRNA-1:exon:24985;Parent=Msa0705540-mRNA-1 |
| chr4_4 | five_prime_UTR | 78296883 | 78297023 | 78296883 | ID=Msa0705540-mRNA-1:five_prime_utr;Parent=Msa0705540-mRNA-1 |
| chr4_4 | five_prime_UTR | 78296671 | 78296784 | 78296671 | ID=Msa0705540-mRNA-1:five_prime_utr;Parent=Msa0705540-mRNA-1 |
| chr4_4 | five_prime_UTR | 78296498 | 78296521 | 78296498 | ID=Msa0705540-mRNA-1:five_prime_utr;Parent=Msa0705540-mRNA-1 |
| chr4_4 | CDS | 78296416 | 78296497 | 78296416 | ID=Msa0705540-mRNA-1:cds;Parent=Msa0705540-mRNA-1 |
| chr4_4 | CDS | 78296161 | 78296247 | 78296161 | ID=Msa0705540-mRNA-1:cds;Parent=Msa0705540-mRNA-1 |
| chr4_4 | CDS | 78295560 | 78295606 | 78295560 | ID=Msa0705540-mRNA-1:cds;Parent=Msa0705540-mRNA-1 |
| chr4_4 | CDS | 78294196 | 78294347 | 78294196 | ID=Msa0705540-mRNA-1:cds;Parent=Msa0705540-mRNA-1 |
| chr4_4 | CDS | 78293846 | 78294009 | 78293846 | ID=Msa0705540-mRNA-1:cds;Parent=Msa0705540-mRNA-1 |
| chr4_4 | CDS | 78293548 | 78293655 | 78293548 | ID=Msa0705540-mRNA-1:cds;Parent=Msa0705540-mRNA-1 |
| chr4_4 | CDS | 78292897 | 78292990 | 78292897 | ID=Msa0705540-mRNA-1:cds;Parent=Msa0705540-mRNA-1 |
| chr4_4 | CDS | 78292450 | 78292538 | 78292450 | ID=Msa0705540-mRNA-1:cds;Parent=Msa0705540-mRNA-1 |
| chr4_4 | CDS | 78291403 | 78291501 | 78291403 | ID=Msa0705540-mRNA-1:cds;Parent=Msa0705540-mRNA-1 |
| chr4_4 | CDS | 78291045 | 78291259 | 78291045 | ID=Msa0705540-mRNA-1:cds;Parent=Msa0705540-mRNA-1 |
| chr4_4 | CDS | 78290558 | 78290768 | 78290558 | ID=Msa0705540-mRNA-1:cds;Parent=Msa0705540-mRNA-1 |
| chr4_4 | CDS | 78290089 | 78290141 | 78290089 | ID=Msa0705540-mRNA-1:cds;Parent=Msa0705540-mRNA-1 |
| chr4_4 | three_prime_UTR | 78289904 | 78290088 | 78289904 | ID=Msa0705540-mRNA-1:three_prime_utr;Parent=Msa0705540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
