AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0715310


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0715310 MtrunA17_Chr5g0402501 91.257 549 35 2 1 539 1 546 0.0 970
Msa0715310 MtrunA17_Chr8g0374741 64.511 603 144 10 1 539 1 597 0.0 665
Msa0715310 MtrunA17_Chr3g0133631 50.276 543 219 16 25 537 47 568 1.32e-149 441
Msa0715310 MtrunA17_Chr1g0153951 50.460 543 214 14 33 536 18 544 6.15e-140 415
Msa0715310 MtrunA17_Chr4g0028651 30.664 587 311 16 33 537 121 693 1.63e-68 233
Msa0715310 MtrunA17_Chr5g0435281 30.601 549 283 14 33 537 15 509 1.41e-62 213
Msa0715310 MtrunA17_Chr8g0373901 24.466 609 352 16 10 537 39 620 6.04e-39 150
Msa0715310 MtrunA17_Chr5g0403231 23.609 593 363 11 12 537 49 618 6.50e-36 142
Msa0715310 MtrunA17_Chr5g0399331 25.091 550 334 13 24 536 66 574 2.69e-34 136
Msa0715310 MtrunA17_Chr4g0034351 26.531 343 208 6 232 537 277 612 4.52e-28 118
Msa0715310 MtrunA17_Chr3g0115381 28.358 201 126 6 299 487 520 714 1.56e-14 76.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0715310 AT4G37080.2 54.424 599 197 12 6 539 23 610 0.0 564
Msa0715310 AT4G37080.3 54.424 599 197 12 6 539 23 610 0.0 564
Msa0715310 AT4G37080.1 54.622 595 194 12 10 539 14 597 0.0 562
Msa0715310 AT4G37080.4 51.200 500 168 12 6 440 23 511 7.18e-137 406
Msa0715310 AT5G42690.5 47.801 523 221 14 32 536 22 510 2.79e-129 387
Msa0715310 AT5G42690.2 47.801 523 221 14 32 536 49 537 8.44e-129 387
Msa0715310 AT5G42690.4 47.801 523 221 14 32 536 49 537 8.44e-129 387
Msa0715310 AT5G42690.1 47.893 522 221 14 32 536 49 536 9.83e-129 387
Msa0715310 AT5G42690.3 47.592 519 220 14 36 536 1 485 1.23e-126 379
Msa0715310 AT2G39690.5 30.996 542 300 15 34 537 18 523 2.75e-61 211
Msa0715310 AT2G39690.2 37.383 321 169 7 249 537 96 416 3.15e-61 207
Msa0715310 AT2G39690.4 31.262 531 291 15 45 537 3 497 3.69e-61 209
Msa0715310 AT2G39690.8 31.132 530 292 15 45 537 3 496 1.36e-60 208
Msa0715310 AT2G39690.1 30.869 541 301 15 34 537 18 522 1.40e-60 209
Msa0715310 AT3G12540.2 29.293 495 277 13 83 537 42 503 1.50e-58 202
Msa0715310 AT3G12540.1 28.187 557 308 16 31 537 56 570 1.52e-56 199
Msa0715310 AT5G60720.1 33.429 350 172 10 249 537 340 689 7.35e-49 180
Msa0715310 AT1G16750.1 35.769 260 145 5 295 536 271 526 1.47e-39 151
Msa0715310 AT5G47380.5 24.735 566 356 13 2 536 3 529 2.32e-38 148
Msa0715310 AT5G47380.1 25.141 533 332 12 35 536 89 585 3.48e-38 149
Msa0715310 AT5G47380.4 25.141 533 332 12 35 536 89 585 3.86e-38 148
Msa0715310 AT3G13000.3 25.439 570 312 18 35 536 49 573 1.62e-33 134
Msa0715310 AT3G13000.2 25.439 570 312 18 35 536 49 573 1.62e-33 134
Msa0715310 AT3G13000.1 25.439 570 312 18 35 536 20 544 1.72e-33 134
Msa0715310 AT2G23700.1 29.830 352 194 9 231 537 358 701 4.07e-32 131
Msa0715310 AT2G39690.6 28.668 443 244 14 34 440 18 424 6.12e-30 122
Msa0715310 AT2G39690.7 28.507 442 245 14 34 440 18 423 2.22e-29 120
Msa0715310 AT3G18900.5 29.814 322 174 11 245 537 227 525 1.44e-27 116
Msa0715310 AT3G18900.4 29.814 322 174 11 245 537 232 530 1.46e-27 116
Msa0715310 AT3G18900.6 29.874 318 179 11 245 537 151 449 3.98e-27 114
Msa0715310 AT3G18900.3 29.874 318 179 11 245 537 151 449 3.98e-27 114
Msa0715310 AT5G66600.14 23.446 563 342 15 37 537 73 608 3.60e-26 113
Msa0715310 AT5G66600.1 23.446 563 342 15 37 537 73 608 3.60e-26 113
Msa0715310 AT5G66600.4 23.446 563 342 15 37 537 73 608 3.60e-26 113
Msa0715310 AT5G66600.9 23.446 563 342 15 37 537 73 608 3.60e-26 113
Msa0715310 AT5G66600.3 23.446 563 342 15 37 537 73 608 3.60e-26 113
Msa0715310 AT5G66600.7 23.363 565 344 15 35 537 17 554 4.25e-26 112
Msa0715310 AT5G66600.2 23.446 563 342 15 37 537 53 588 5.54e-26 112
Msa0715310 AT1G43020.1 27.036 307 186 11 248 538 151 435 3.34e-25 108
Msa0715310 AT1G76620.1 25.672 335 192 7 249 537 193 516 5.97e-25 108
Msa0715310 AT5G47380.2 24.374 439 266 11 35 443 89 491 1.93e-22 101
Msa0715310 AT5G47380.3 23.908 435 265 11 35 439 89 487 9.62e-22 99.0
Msa0715310 AT1G21060.1 26.250 320 194 7 249 539 199 505 1.17e-21 99.0
Msa0715310 AT1G21060.2 26.250 320 194 7 249 539 187 493 1.25e-21 98.6
Msa0715310 AT2G39690.3 27.642 369 200 12 45 382 3 335 2.84e-21 96.3
Msa0715310 AT4G08550.1 25.911 247 156 8 301 533 402 635 1.16e-16 83.6
Msa0715310 AT4G08550.2 25.911 247 156 8 301 533 456 689 1.61e-16 83.2
Msa0715310 AT1G16750.2 41.860 86 50 0 295 380 271 356 1.24e-14 76.3
Msa0715310 AT3G11920.1 27.014 211 130 8 301 496 393 594 5.66e-13 72.0
Msa0715310 AT5G66600.12 25.738 237 135 4 245 440 278 514 5.76e-13 71.6
Msa0715310 AT5G66600.11 25.738 237 135 4 245 440 278 514 5.76e-13 71.6
Msa0715310 AT5G66600.6 25.738 237 135 4 245 440 278 514 5.76e-13 71.6
Msa0715310 AT5G66600.13 25.738 237 135 4 245 440 278 514 5.76e-13 71.6
Msa0715310 AT1G43020.3 25.728 206 123 8 248 439 151 340 3.02e-12 68.6
Msa0715310 AT3G18900.1 28.182 220 119 7 245 440 232 436 1.78e-11 67.0

Find 118 sgRNAs with CRISPR-Local

Find 263 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTGTTGTTTGTGAATTAT+TGG 0.137250 5_1:-8277759 Msa0715310:five_prime_UTR
TCCTAGATTGTCCTTGAATA+TGG 0.203016 5_1:+8275875 None:intergenic
ACCAGGAGAAACTTGCATTT+TGG 0.212496 5_1:-8275571 Msa0715310:CDS
TGCCCTATGATTTCAGTTTC+AGG 0.214439 5_1:-8273887 Msa0715310:CDS
ATGAAAGCAAGAGGCATATT+TGG 0.216429 5_1:-8274845 Msa0715310:CDS
TGGATCCTTTGATGGAATTC+TGG 0.239508 5_1:+8276374 None:intergenic
ATATCCTCTGAAACTCTATT+TGG 0.284459 5_1:+8275933 None:intergenic
CTTGGAATCTTTGTTGGATT+GGG 0.291306 5_1:-8274003 Msa0715310:CDS
CAAGTAATGTTTCCTTTGAT+AGG 0.299053 5_1:-8273719 Msa0715310:three_prime_UTR
TACAATACTACAGCAGAAAA+AGG 0.307050 5_1:+8277677 None:intergenic
GCTTGTGTAAAGTACCAATA+TGG 0.316724 5_1:+8277982 None:intergenic
GAAATCTATTGAAAAGAAAA+TGG 0.326415 5_1:-8276197 Msa0715310:CDS
CTTTCTACTAGAAGCACTTC+TGG 0.332145 5_1:+8276279 None:intergenic
AGCAAGAGGCATATTTGGTT+TGG 0.336129 5_1:-8274840 Msa0715310:CDS
GACCTTTGTAAACTGCAATA+AGG 0.339529 5_1:-8273691 Msa0715310:three_prime_UTR
CTCTTCTGGTATTGAAGATA+AGG 0.350268 5_1:+8276219 None:intergenic
TGAAGATAAGGAGTCTTGTT+TGG 0.352746 5_1:+8276231 None:intergenic
TTTCAGACAAGGTTTATATC+AGG 0.354150 5_1:-8276452 Msa0715310:CDS
TTGTCATCATTATCCCATAT+TGG 0.354486 5_1:-8277996 None:intergenic
AGAGCACTCACTAGACCTTT+AGG 0.357274 5_1:-8276743 Msa0715310:CDS
TATGAGAATTTCCATATTCA+AGG 0.365612 5_1:-8275886 Msa0715310:CDS
TTGCTTGGTGATTTCTTCAC+TGG 0.366646 5_1:+8276160 None:intergenic
AGCAAAGAGAGATTATTTAC+AGG 0.366908 5_1:-8274105 Msa0715310:CDS
TTGATGTTTGGATCCTTTGA+TGG 0.368156 5_1:+8276366 None:intergenic
TCAACTGATTCTTGTTTGCT+TGG 0.368635 5_1:+8276145 None:intergenic
ATCAGTGCTACAACCATTTC+AGG 0.373611 5_1:+8275329 None:intergenic
AAAAGGAGGGAGCAGGAAAA+TGG 0.374679 5_1:-8276972 Msa0715310:CDS
ACCTCTCACTGGATTATTTG+TGG 0.376104 5_1:+8273827 None:intergenic
GCTGCCTTCCCCTTCTTTCA+AGG 0.376152 5_1:+8273934 None:intergenic
CAACCTGAAACTGAAATCAT+AGG 0.378498 5_1:+8273884 None:intergenic
ATATCGAAAACTAGAGATAT+TGG 0.379801 5_1:-8275810 Msa0715310:CDS
CAGAGCACACACCACTCTTC+AGG 0.383282 5_1:-8277601 Msa0715310:intron
AAGCAGGAAAAGATGGAAAA+AGG 0.383928 5_1:-8276989 Msa0715310:intron
ACTTGGAATCTTTGTTGGAT+TGG 0.390859 5_1:-8274004 Msa0715310:CDS
TTTGGAATGGTCTGAACCTT+TGG 0.394809 5_1:-8274822 Msa0715310:CDS
TCCATATTCAAGGACAATCT+AGG 0.414001 5_1:-8275876 Msa0715310:CDS
AAAGGACTTGGAATCTTTGT+TGG 0.415429 5_1:-8274009 Msa0715310:CDS
TGTGGCTGAAGTTGCGGTAT+TGG 0.415617 5_1:-8276512 Msa0715310:CDS
AGGGCGTCGAGAAAGGAAAA+TGG 0.421258 5_1:-8276927 Msa0715310:CDS
GATATTGAACAGATACCATA+TGG 0.422044 5_1:+8275828 None:intergenic
GCTTCCTTTCTCAGTTCAAC+AGG 0.438309 5_1:+8273966 None:intergenic
TGCAGATCACGTGAAGTTGC+AGG 0.442494 5_1:-8276116 Msa0715310:intron
TCCAAAATGCAAGTTTCTCC+TGG 0.448612 5_1:+8275570 None:intergenic
AAGAGAAATCTGAGGCCTAA+TGG 0.449344 5_1:+8276303 None:intergenic
ACAAAATTCATCAGACGATA+AGG 0.452744 5_1:-8275976 Msa0715310:CDS
ATAAGGTGTTAGAAGTTGAT+AGG 0.456293 5_1:-8275959 Msa0715310:CDS
AGCTTAATTCTACAACCATT+AGG 0.459006 5_1:-8276318 Msa0715310:CDS
AAGTAATGTTTCCTTTGATA+GGG 0.461447 5_1:-8273718 Msa0715310:three_prime_UTR
TCTAGTAGAAAGCTAGTCAA+TGG 0.462544 5_1:-8276268 Msa0715310:CDS
TGCAGGTTGATAAGTTAAAG+AGG 0.463381 5_1:-8276805 Msa0715310:intron
ACTTGCCTCTGTGAACTTGA+AGG 0.469270 5_1:-8275603 Msa0715310:CDS
CAGTTGAATGCCTTGAAAGA+AGG 0.473839 5_1:-8273944 Msa0715310:CDS
TTGCACTATCTTGTGGAAGC+TGG 0.481719 5_1:-8274793 Msa0715310:CDS
TATACTAAAATTCATGGAGC+GGG 0.483561 5_1:+8277806 None:intergenic
ATGTGCAAAGCAGGAAAAGA+TGG 0.484944 5_1:-8276996 Msa0715310:intron
ACTCGACTTTGCAAAGGACT+TGG 0.489476 5_1:-8274021 Msa0715310:CDS
TTGATGGAATTCTGGTCCAT+CGG 0.493905 5_1:+8276382 None:intergenic
GGTGGTTCGATTAGAAGAGA+AGG 0.495299 5_1:-8276482 Msa0715310:CDS
CTTACATGGGAAGGGAGATA+AGG 0.496981 5_1:+8276701 None:intergenic
TGATGGAATTCTGGTCCATC+GGG 0.498652 5_1:+8276383 None:intergenic
ACATTAACAGCACCTCTCAC+TGG 0.505947 5_1:+8273816 None:intergenic
CTTTCATTAGTCATTATATG+AGG 0.506223 5_1:-8277946 Msa0715310:five_prime_UTR
GTTACATTTGCACTATCTTG+TGG 0.506373 5_1:-8274800 Msa0715310:CDS
AGTTGAATGCCTTGAAAGAA+GGG 0.509505 5_1:-8273943 Msa0715310:CDS
CTAGTAGAAAGCTAGTCAAT+GGG 0.511137 5_1:-8276267 Msa0715310:CDS
ACACCTCCACGTGATCCATA+TGG 0.511970 5_1:-8275843 Msa0715310:CDS
ACAACCATTTCAGGACTCTC+AGG 0.512777 5_1:+8275338 None:intergenic
GAGGCATATTTGGTTTGGAA+TGG 0.523893 5_1:-8274835 Msa0715310:CDS
GGGAGATAAGGAGGAAGACG+AGG 0.525815 5_1:+8276713 None:intergenic
GCTACCTGTTGAACTGAGAA+AGG 0.530299 5_1:-8273970 Msa0715310:CDS
TTTCATTCGGTTGAAATCAA+CGG 0.530335 5_1:+8275752 None:intergenic
CTTAATCTACTTACATGGGA+AGG 0.531642 5_1:+8276692 None:intergenic
GATTATTTACAGGCAGCAGT+TGG 0.534652 5_1:-8274095 Msa0715310:CDS
TTGCTTGTACACCAGTAACC+TGG 0.536984 5_1:-8273864 Msa0715310:exon
TAATTCCAAAGATACTTGAC+TGG 0.540269 5_1:-8274049 Msa0715310:CDS
CTTGTGTAAAGTACCAATAT+GGG 0.540704 5_1:+8277983 None:intergenic
GTATCTTACATTCATCATAC+AGG 0.540740 5_1:+8275532 None:intergenic
GGCTGAAGTTGCGGTATTGG+AGG 0.545349 5_1:-8276509 Msa0715310:CDS
CATACCTGAGAGTCCTGAAA+TGG 0.549579 5_1:-8275342 Msa0715310:CDS
CTTGAAGGGTCTTACTCACC+AGG 0.555043 5_1:-8275588 Msa0715310:CDS
TCGGTTGAAATCAACGGTGG+AGG 0.556026 5_1:+8275758 None:intergenic
AACCTGAAACTGAAATCATA+GGG 0.561621 5_1:+8273885 None:intergenic
CGAAAATTCGATTGACCCGA+TGG 0.561722 5_1:-8276398 Msa0715310:CDS
TTGTAGGCATATTTAGAGCA+TGG 0.564337 5_1:-8275365 Msa0715310:intron
GACCTTATTGCAGTTTACAA+AGG 0.565949 5_1:+8273689 None:intergenic
AGAGCTTGTGGCTGAAGTTG+CGG 0.570036 5_1:-8276518 Msa0715310:CDS
AGTTGCGGTATTGGAGGAAG+AGG 0.573287 5_1:-8276503 Msa0715310:CDS
AGACGAGGAAGTGCTCCTAA+AGG 0.579607 5_1:+8276728 None:intergenic
TCAGTTCAACAGGTAGCTGA+AGG 0.581607 5_1:+8273976 None:intergenic
ATATGTACCATGTGTGAAAG+AGG 0.585157 5_1:+8273912 None:intergenic
CTTGCCTCTGTGAACTTGAA+GGG 0.587168 5_1:-8275602 Msa0715310:CDS
AAAGGTCAAAACCCTATCAA+AGG 0.588642 5_1:+8273707 None:intergenic
TGCGGTATTGGAGGAAGAGG+TGG 0.595764 5_1:-8276500 Msa0715310:CDS
AATGATGAGATGAAAGCAAG+AGG 0.596232 5_1:-8274854 Msa0715310:CDS
TTAATCTACTTACATGGGAA+GGG 0.597323 5_1:+8276693 None:intergenic
CAGATACCATATGGATCACG+TGG 0.601566 5_1:+8275837 None:intergenic
GACACCAAATAGAGTTTCAG+AGG 0.605334 5_1:-8275937 Msa0715310:CDS
CTGTCTACATTTCCTCCAAG+AGG 0.607010 5_1:-8276426 Msa0715310:CDS
ATGGACCAGAATTCCATCAA+AGG 0.609091 5_1:-8276379 Msa0715310:CDS
TCAAAGGATCCAAACATCAA+AGG 0.609297 5_1:-8276363 Msa0715310:CDS
TTATACTAAAATTCATGGAG+CGG 0.610478 5_1:+8277805 None:intergenic
ATGCTTACTGCTAAGTGCGA+AGG 0.612958 5_1:+8273637 None:intergenic
GATAGTGCAAATGTAACCAA+AGG 0.614690 5_1:+8274806 None:intergenic
CATTCGGTTGAAATCAACGG+TGG 0.616978 5_1:+8275755 None:intergenic
TGGAAGCTGGTCATCACCCG+TGG 0.637861 5_1:-8274780 Msa0715310:intron
ACATGGGAAGGGAGATAAGG+AGG 0.643159 5_1:+8276704 None:intergenic
TTGATTGATTACCTGAAGAG+TGG 0.645456 5_1:+8277590 None:intergenic
GTAATCTACAAAGCATAACA+AGG 0.653610 5_1:+8274937 None:intergenic
CATGGCGAAAACAAATGAGA+AGG 0.653686 5_1:+8277888 None:intergenic
AAGGTTGTGAATTTCAGACA+AGG 0.655478 5_1:-8276463 Msa0715310:CDS
GGTTGTAGCACTGATGCAGA+AGG 0.659494 5_1:-8275321 Msa0715310:intron
ACCACAAATAATCCAGTGAG+AGG 0.668723 5_1:-8273828 Msa0715310:three_prime_UTR
GTTGAATGCCTTGAAAGAAG+GGG 0.670351 5_1:-8273942 Msa0715310:CDS
AATGCCTTGAAAGAAGGGGA+AGG 0.676784 5_1:-8273938 Msa0715310:CDS
AAGGCAGCCTCTTTCACACA+TGG 0.686885 5_1:-8273919 Msa0715310:CDS
CTTCTGGCAAGAGAAATCTG+AGG 0.757425 5_1:+8276295 None:intergenic
ATACCATATGGATCACGTGG+AGG 0.760579 5_1:+8275840 None:intergenic
AAGACCCTTCAAGTTCACAG+AGG 0.790606 5_1:+8275598 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATCAATGTATTTATTA+AGG - chr5_1:8277321-8277340 Msa0715310:intron 10.0%
!! AAAATAATACAAAAACAAAA+AGG - chr5_1:8277980-8277999 Msa0715310:five_prime_UTR 10.0%
!! AAATAATACAAAAACAAAAA+GGG - chr5_1:8277981-8278000 Msa0715310:five_prime_UTR 10.0%
!!! AGATTTTATACTAAAATTCA+TGG + chr5_1:8273743-8273762 None:intergenic 15.0%
!! ATAAAGAGAAAGAAAAAAAT+AGG + chr5_1:8274008-8274027 None:intergenic 15.0%
!!! TATTTTTTTCTTTCTCTTTA+TGG - chr5_1:8274007-8274026 Msa0715310:CDS 15.0%
!! GAAAAACAAATAAAGAAAAT+TGG + chr5_1:8274033-8274052 None:intergenic 15.0%
!! AATTGAGAAAAATAAGAAAT+TGG - chr5_1:8274338-8274357 Msa0715310:intron 15.0%
!! AATGCTTATCTAAATATAAT+TGG + chr5_1:8276397-8276416 None:intergenic 15.0%
!!! ACATTAACTATTTTCTTTTT+CGG - chr5_1:8276824-8276843 Msa0715310:intron 15.0%
!!! TATATATGAAAATTTGTTTC+AGG - chr5_1:8276906-8276925 Msa0715310:intron 15.0%
!!! ATATATGAAAATTTGTTTCA+GGG - chr5_1:8276907-8276926 Msa0715310:intron 15.0%
!!! ATCTATCATAAATTTGTTAT+CGG - chr5_1:8277107-8277126 Msa0715310:intron 15.0%
!!! ATTTTTATTTTATGAAGGTA+AGG - chr5_1:8277374-8277393 Msa0715310:intron 15.0%
!!! TTTTTATTTTATGAAGGTAA+GGG - chr5_1:8277375-8277394 Msa0715310:intron 15.0%
!! AATAATACAAAAACAAAAAG+GGG - chr5_1:8277982-8278001 Msa0715310:five_prime_UTR 15.0%
!! AAAAAAAATATGGAAGAACA+TGG + chr5_1:8273673-8273692 None:intergenic 20.0%
!! ATCAAAATTCCTTCAAAAAA+CGG - chr5_1:8273968-8273987 Msa0715310:CDS 20.0%
!!! TTTCTCATGTTTTTTTTTGT+TGG - chr5_1:8274102-8274121 Msa0715310:CDS 20.0%
!!! CACATAATACTTTGAAAAAA+GGG - chr5_1:8274594-8274613 Msa0715310:intron 20.0%
!! GAAATCTATTGAAAAGAAAA+TGG - chr5_1:8275343-8275362 Msa0715310:CDS 20.0%
!! TCGATTAAAGTAAGTTATAA+AGG - chr5_1:8275831-8275850 Msa0715310:CDS 20.0%
!! CGATTAAAGTAAGTTATAAA+GGG - chr5_1:8275832-8275851 Msa0715310:CDS 20.0%
!! CAATTATTTGGTTATATTGT+AGG - chr5_1:8276159-8276178 Msa0715310:CDS 20.0%
!!! ATTTTCATATATACTAGTCA+AGG + chr5_1:8276899-8276918 None:intergenic 20.0%
!!! TCTATCATAAATTTGTTATC+GGG - chr5_1:8277108-8277127 Msa0715310:intron 20.0%
!! AAAATTAGAAAAGTGGAAAT+TGG + chr5_1:8277252-8277271 None:intergenic 20.0%
!!! AATGTATTTATTAAGGCATT+TGG - chr5_1:8277328-8277347 Msa0715310:intron 20.0%
!! ATAATACAAAAACAAAAAGG+GGG - chr5_1:8277983-8278002 Msa0715310:five_prime_UTR 20.0%
! CTTTCATTAGTCATTATATG+AGG - chr5_1:8273594-8273613 Msa0715310:three_prime_UTR 25.0%
! TTATACTAAAATTCATGGAG+CGG + chr5_1:8273738-8273757 None:intergenic 25.0%
!! TGTTTTTCTGTTTGATTGTA+AGG - chr5_1:8274045-8274064 Msa0715310:CDS 25.0%
! AAGAAACAAATGACCATTTA+AGG - chr5_1:8274072-8274091 Msa0715310:CDS 25.0%
!!! TAAGTGTTACTTTAACAGTT+AGG - chr5_1:8274381-8274400 Msa0715310:intron 25.0%
! AAATGAGAAAGAAAGATAGA+AGG + chr5_1:8274480-8274499 None:intergenic 25.0%
!! GCACATAATACTTTGAAAAA+AGG - chr5_1:8274593-8274612 Msa0715310:intron 25.0%
! GTAGAACAATTAATAATGCA+AGG + chr5_1:8274669-8274688 None:intergenic 25.0%
! ATGCATTGAATACAATTGAT+CGG + chr5_1:8274908-8274927 None:intergenic 25.0%
! TCAATTGTATTCAATGCATT+TGG - chr5_1:8274909-8274928 Msa0715310:CDS 25.0%
!! TTTTCAATAGATTTCTCTTC+TGG + chr5_1:8275338-8275357 None:intergenic 25.0%
! GCACATCAAATAGTAATTAT+TGG + chr5_1:8275463-8275482 None:intergenic 25.0%
! TATGAGAATTTCCATATTCA+AGG - chr5_1:8275654-8275673 Msa0715310:intron 25.0%
! ATATCGAAAACTAGAGATAT+TGG - chr5_1:8275730-8275749 Msa0715310:CDS 25.0%
! AATCTCACAAAAACTATTGT+AGG + chr5_1:8275758-8275777 None:intergenic 25.0%
!! GAAACACTGAATTTTTCATT+CGG + chr5_1:8275804-8275823 None:intergenic 25.0%
!!! CTTTTTGTTGATTCTACATA+TGG - chr5_1:8275862-8275881 Msa0715310:CDS 25.0%
! CTTACATAATTCAAGTGATA+AGG + chr5_1:8276520-8276539 None:intergenic 25.0%
! TAGATGAAAATATTGTTCTG+TGG - chr5_1:8276801-8276820 Msa0715310:CDS 25.0%
! ATAGTTATCATTCTTGATGT+GGG - chr5_1:8277291-8277310 Msa0715310:intron 25.0%
!! ATTTTTGAACTTTGATGTTC+TGG - chr5_1:8277760-8277779 Msa0715310:five_prime_UTR 25.0%
!!! ATGTTCTGGATTTTGTATAT+TGG - chr5_1:8277774-8277793 Msa0715310:five_prime_UTR 25.0%
! AAGTAATGTTTCCTTTGATA+GGG - chr5_1:8277822-8277841 Msa0715310:five_prime_UTR 25.0%
! TACAGTCTGTGAAAAAAAAA+GGG + chr5_1:8277876-8277895 None:intergenic 25.0%
! TTACAGTCTGTGAAAAAAAA+AGG + chr5_1:8277877-8277896 None:intergenic 25.0%
!!! TTTTTTCACAGACTGTAATA+AGG - chr5_1:8277879-8277898 Msa0715310:five_prime_UTR 25.0%
! CTTGTGTAAAGTACCAATAT+GGG + chr5_1:8273560-8273579 None:intergenic 30.0%
TATACTAAAATTCATGGAGC+GGG + chr5_1:8273737-8273756 None:intergenic 30.0%
! CTCTGTTGTTTGTGAATTAT+TGG - chr5_1:8273781-8273800 Msa0715310:three_prime_UTR 30.0%
TACAATACTACAGCAGAAAA+AGG + chr5_1:8273866-8273885 None:intergenic 30.0%
!!! TTTCTTGTTTTGTGTGAAAG+TGG - chr5_1:8273904-8273923 Msa0715310:CDS 30.0%
!!! AATAGTTTGCCGTTTTTTGA+AGG + chr5_1:8273980-8273999 None:intergenic 30.0%
! AAATGACCATTTAAGGTTGT+TGG - chr5_1:8274079-8274098 Msa0715310:CDS 30.0%
!!! AACCACTTGGTTTTGAATAT+AGG - chr5_1:8274271-8274290 Msa0715310:intron 30.0%
AAGAACATAGTTCTCAGATT+TGG + chr5_1:8274422-8274441 None:intergenic 30.0%
TTAATCTACTTACATGGGAA+GGG + chr5_1:8274850-8274869 None:intergenic 30.0%
CTGACTTAATCTACTTACAT+GGG + chr5_1:8274855-8274874 None:intergenic 30.0%
! ACTGACTTAATCTACTTACA+TGG + chr5_1:8274856-8274875 None:intergenic 30.0%
! ATTTTAGACATTAGAGCTTG+TGG - chr5_1:8275010-8275029 Msa0715310:intron 30.0%
TTTCAGACAAGGTTTATATC+AGG - chr5_1:8275088-8275107 Msa0715310:intron 30.0%
!! TGATTTTGACCTTTGATGTT+TGG + chr5_1:8275189-8275208 None:intergenic 30.0%
AGCTTAATTCTACAACCATT+AGG - chr5_1:8275222-8275241 Msa0715310:intron 30.0%
!! TTTTGTTTCGATTAATCAGC+TGG - chr5_1:8275513-8275532 Msa0715310:intron 30.0%
ACAAAATTCATCAGACGATA+AGG - chr5_1:8275564-8275583 Msa0715310:CDS 30.0%
! ATAAGGTGTTAGAAGTTGAT+AGG - chr5_1:8275581-8275600 Msa0715310:CDS 30.0%
!! ATATCCTCTGAAACTCTATT+TGG + chr5_1:8275610-8275629 None:intergenic 30.0%
GATATTGAACAGATACCATA+TGG + chr5_1:8275715-8275734 None:intergenic 30.0%
TTTCATTCGGTTGAAATCAA+CGG + chr5_1:8275791-8275810 None:intergenic 30.0%
!! ACATGTCCAGGTTTTTATTT+GGG - chr5_1:8275912-8275931 Msa0715310:CDS 30.0%
AAGTTTCCCAAATAAAAACC+TGG + chr5_1:8275921-8275940 None:intergenic 30.0%
GTATCTTACATTCATCATAC+AGG + chr5_1:8276011-8276030 None:intergenic 30.0%
! CTAAAAGAGTTGTCTTTTTG+AGG - chr5_1:8276073-8276092 Msa0715310:intron 30.0%
TTGAGGTGACTACAATTATT+TGG - chr5_1:8276147-8276166 Msa0715310:CDS 30.0%
! ATTGACATGAATGGATTTCT+TGG - chr5_1:8276353-8276372 Msa0715310:CDS 30.0%
GTAATCTACAAAGCATAACA+AGG + chr5_1:8276606-8276625 None:intergenic 30.0%
!!! ATTTTTTGCAGCTTTTAGAC+AGG + chr5_1:8276669-8276688 None:intergenic 30.0%
ATTGAGAAACAAACATACCA+CGG + chr5_1:8276780-8276799 None:intergenic 30.0%
GATGATCACATAAGACATTA+AGG + chr5_1:8276855-8276874 None:intergenic 30.0%
GCTGAGAATTGAAATAATCT+AGG - chr5_1:8276949-8276968 Msa0715310:CDS 30.0%
! CAAGTTACAAGTCAGTTTTT+AGG + chr5_1:8277043-8277062 None:intergenic 30.0%
!! AAACTGACTTGTAACTTGTA+AGG - chr5_1:8277045-8277064 Msa0715310:intron 30.0%
GCTAGTGAAAATTAGAAAAG+TGG + chr5_1:8277259-8277278 None:intergenic 30.0%
! CTTTTCTAATTTTCACTAGC+AGG - chr5_1:8277259-8277278 Msa0715310:intron 30.0%
CATAGTTATCATTCTTGATG+TGG - chr5_1:8277290-8277309 Msa0715310:intron 30.0%
AGCAAAGAGAGATTATTTAC+AGG - chr5_1:8277435-8277454 Msa0715310:intron 30.0%
TAATTCCAAAGATACTTGAC+TGG - chr5_1:8277491-8277510 Msa0715310:intron 30.0%
AAAAACCAGTCAAGTATCTT+TGG + chr5_1:8277499-8277518 None:intergenic 30.0%
AACCTGAAACTGAAATCATA+GGG + chr5_1:8277658-8277677 None:intergenic 30.0%
CAAGTAATGTTTCCTTTGAT+AGG - chr5_1:8277821-8277840 Msa0715310:five_prime_UTR 30.0%
! GCAGTAAGCATAGATTTTAT+AGG - chr5_1:8277915-8277934 Msa0715310:five_prime_UTR 30.0%
!!! TCATATTTTGATGCGATCAT+GGG + chr5_1:8277949-8277968 None:intergenic 30.0%
! GCTTGTGTAAAGTACCAATA+TGG + chr5_1:8273561-8273580 None:intergenic 35.0%
GCGGGAAAAAGAAGAAAAAA+TGG + chr5_1:8273719-8273738 None:intergenic 35.0%
TTGATTGATTACCTGAAGAG+TGG + chr5_1:8273953-8273972 None:intergenic 35.0%
GAGAAACCAACAACCTTAAA+TGG + chr5_1:8274088-8274107 None:intergenic 35.0%
!!! TTTTTGTTGGTCTTACCCTT+CGG - chr5_1:8274115-8274134 Msa0715310:CDS 35.0%
TGGAGATGATAAGTAAAGAC+TGG - chr5_1:8274164-8274183 Msa0715310:intron 35.0%
ACTACTTAAGTCTAACCACT+TGG - chr5_1:8274258-8274277 Msa0715310:intron 35.0%
AGCCTATATTCAAAACCAAG+TGG + chr5_1:8274276-8274295 None:intergenic 35.0%
GAGAAAGAAAGATAGAAGGA+AGG + chr5_1:8274476-8274495 None:intergenic 35.0%
AAGCAGGAAAAGATGGAAAA+AGG - chr5_1:8274551-8274570 Msa0715310:intron 35.0%
AGGAAAAGATGGAAAAAGGA+GGG - chr5_1:8274555-8274574 Msa0715310:intron 35.0%
!! TGCAGGTTGATAAGTTAAAG+AGG - chr5_1:8274735-8274754 Msa0715310:intron 35.0%
CTTAATCTACTTACATGGGA+AGG + chr5_1:8274851-8274870 None:intergenic 35.0%
AAGGTTGTGAATTTCAGACA+AGG - chr5_1:8275077-8275096 Msa0715310:intron 35.0%
TTGATGTTTGGATCCTTTGA+TGG + chr5_1:8275177-8275196 None:intergenic 35.0%
TCAAAGGATCCAAACATCAA+AGG - chr5_1:8275177-8275196 Msa0715310:intron 35.0%
TCTAGTAGAAAGCTAGTCAA+TGG - chr5_1:8275272-8275291 Msa0715310:intron 35.0%
CTAGTAGAAAGCTAGTCAAT+GGG - chr5_1:8275273-8275292 Msa0715310:intron 35.0%
!! TGAAGATAAGGAGTCTTGTT+TGG + chr5_1:8275312-8275331 None:intergenic 35.0%
! CTCTTCTGGTATTGAAGATA+AGG + chr5_1:8275324-8275343 None:intergenic 35.0%
! TCAACTGATTCTTGTTTGCT+TGG + chr5_1:8275398-8275417 None:intergenic 35.0%
TCCATATTCAAGGACAATCT+AGG - chr5_1:8275664-8275683 Msa0715310:intron 35.0%
TCCTAGATTGTCCTTGAATA+TGG + chr5_1:8275668-8275687 None:intergenic 35.0%
CTAATCTAAAAGACATGTCC+AGG - chr5_1:8275900-8275919 Msa0715310:CDS 35.0%
! GACATGTCCAGGTTTTTATT+TGG - chr5_1:8275911-8275930 Msa0715310:CDS 35.0%
ATTCACTACTTGTCACTACA+AGG - chr5_1:8276045-8276064 Msa0715310:intron 35.0%
TTACCTTGCCTAATATGTTG+AGG - chr5_1:8276130-8276149 Msa0715310:CDS 35.0%
TGTAGTCACCTCAACATATT+AGG + chr5_1:8276141-8276160 None:intergenic 35.0%
! TTGTAGGCATATTTAGAGCA+TGG - chr5_1:8276175-8276194 Msa0715310:CDS 35.0%
CAAAAGCTGAGAACATTAGA+GGG + chr5_1:8276254-8276273 None:intergenic 35.0%
ACAAAAGCTGAGAACATTAG+AGG + chr5_1:8276255-8276274 None:intergenic 35.0%
GAAGCAAAGATGAATTGAGA+AGG + chr5_1:8276325-8276344 None:intergenic 35.0%
CCATTCATGTCAATATGTGA+TGG + chr5_1:8276347-8276366 None:intergenic 35.0%
CCATCACATATTGACATGAA+TGG - chr5_1:8276344-8276363 Msa0715310:CDS 35.0%
!! CATTCGAGTTGACTAAAACT+TGG - chr5_1:8276413-8276432 Msa0715310:CDS 35.0%
!! AACTTGGTAATGTTTGTGAC+AGG - chr5_1:8276429-8276448 Msa0715310:CDS 35.0%
AATGATGAGATGAAAGCAAG+AGG - chr5_1:8276686-8276705 Msa0715310:intron 35.0%
! ATGAAAGCAAGAGGCATATT+TGG - chr5_1:8276695-8276714 Msa0715310:intron 35.0%
GATAGTGCAAATGTAACCAA+AGG + chr5_1:8276737-8276756 None:intergenic 35.0%
GTTACATTTGCACTATCTTG+TGG - chr5_1:8276740-8276759 Msa0715310:CDS 35.0%
TTGAGAAACAAACATACCAC+GGG + chr5_1:8276779-8276798 None:intergenic 35.0%
! TGTTTCAGGGTGTTATGTAA+TGG - chr5_1:8276920-8276939 Msa0715310:CDS 35.0%
TTAGGTCATATCTCAAGTGA+AGG + chr5_1:8277025-8277044 None:intergenic 35.0%
!!! CTTATTTTGATCCTACAAGC+CGG - chr5_1:8277163-8277182 Msa0715310:intron 35.0%
CCTATGATACCAAACAAAAC+CGG + chr5_1:8277185-8277204 None:intergenic 35.0%
! AAGGCATTTGGTTGAATTGA+TGG - chr5_1:8277340-8277359 Msa0715310:intron 35.0%
! GTTTTTACTCGACTTTGCAA+AGG - chr5_1:8277513-8277532 Msa0715310:intron 35.0%
AAAGGACTTGGAATCTTTGT+TGG - chr5_1:8277531-8277550 Msa0715310:intron 35.0%
ACTTGGAATCTTTGTTGGAT+TGG - chr5_1:8277536-8277555 Msa0715310:intron 35.0%
CTTGGAATCTTTGTTGGATT+GGG - chr5_1:8277537-8277556 Msa0715310:intron 35.0%
AGTTGAATGCCTTGAAAGAA+GGG - chr5_1:8277597-8277616 Msa0715310:intron 35.0%
ATATGTACCATGTGTGAAAG+AGG + chr5_1:8277631-8277650 None:intergenic 35.0%
CAACCTGAAACTGAAATCAT+AGG + chr5_1:8277659-8277678 None:intergenic 35.0%
!!! ACCAGTAACCTGGTTTTTTT+TGG - chr5_1:8277686-8277705 Msa0715310:five_prime_UTR 35.0%
TCCAAAAAAAACCAGGTTAC+TGG + chr5_1:8277690-8277709 None:intergenic 35.0%
AAAGGTCAAAACCCTATCAA+AGG + chr5_1:8277836-8277855 None:intergenic 35.0%
GACCTTTGTAAACTGCAATA+AGG - chr5_1:8277849-8277868 Msa0715310:five_prime_UTR 35.0%
GACCTTATTGCAGTTTACAA+AGG + chr5_1:8277854-8277873 None:intergenic 35.0%
!!! CTCATATTTTGATGCGATCA+TGG + chr5_1:8277950-8277969 None:intergenic 35.0%
TACAAAAACAAAAAGGGGGT+TGG - chr5_1:8277987-8278006 Msa0715310:five_prime_UTR 35.0%
CATGGCGAAAACAAATGAGA+AGG + chr5_1:8273655-8273674 None:intergenic 40.0%
AGTCTAAACTTGCGTACTTG+TGG - chr5_1:8274207-8274226 Msa0715310:intron 40.0%
TCTCACTTAATGTGCAAAGC+AGG - chr5_1:8274535-8274554 Msa0715310:intron 40.0%
ATGTGCAAAGCAGGAAAAGA+TGG - chr5_1:8274544-8274563 Msa0715310:intron 40.0%
CAGGAAAAGATGGAAAAAGG+AGG - chr5_1:8274554-8274573 Msa0715310:intron 40.0%
! TTATGCTGCTTGAAGTTTGC+AGG - chr5_1:8274718-8274737 Msa0715310:intron 40.0%
! CATCGGGTCAATCGAATTTT+CGG + chr5_1:8275144-8275163 None:intergenic 40.0%
TTGATGGAATTCTGGTCCAT+CGG + chr5_1:8275161-8275180 None:intergenic 40.0%
ATGGACCAGAATTCCATCAA+AGG - chr5_1:8275161-8275180 Msa0715310:intron 40.0%
TGGATCCTTTGATGGAATTC+TGG + chr5_1:8275169-8275188 None:intergenic 40.0%
! AAGAGAAATCTGAGGCCTAA+TGG + chr5_1:8275240-8275259 None:intergenic 40.0%
!! CTTTCTACTAGAAGCACTTC+TGG + chr5_1:8275264-8275283 None:intergenic 40.0%
! TTGCTTGGTGATTTCTTCAC+TGG + chr5_1:8275383-8275402 None:intergenic 40.0%
GACACCAAATAGAGTTTCAG+AGG - chr5_1:8275603-8275622 Msa0715310:CDS 40.0%
! ACCAGGAGAAACTTGCATTT+TGG - chr5_1:8275969-8275988 Msa0715310:CDS 40.0%
TCCAAAATGCAAGTTTCTCC+TGG + chr5_1:8275973-8275992 None:intergenic 40.0%
TCACCTCAACATATTAGGCA+AGG + chr5_1:8276136-8276155 None:intergenic 40.0%
ATCAGTGCTACAACCATTTC+AGG + chr5_1:8276214-8276233 None:intergenic 40.0%
! AGCAAGAGGCATATTTGGTT+TGG - chr5_1:8276700-8276719 Msa0715310:intron 40.0%
!! GAGGCATATTTGGTTTGGAA+TGG - chr5_1:8276705-8276724 Msa0715310:intron 40.0%
! TTTGGAATGGTCTGAACCTT+TGG - chr5_1:8276718-8276737 Msa0715310:CDS 40.0%
TCTCAAGTGAAGGTGAGATT+TGG + chr5_1:8277015-8277034 None:intergenic 40.0%
!! AAATTTGTTATCGGGCCACT+CGG - chr5_1:8277116-8277135 Msa0715310:intron 40.0%
ATTATCCAGCAAGGTACAGT+AGG - chr5_1:8277139-8277158 Msa0715310:intron 40.0%
TTATCCAGCAAGGTACAGTA+GGG - chr5_1:8277140-8277159 Msa0715310:intron 40.0%
!!! CCGGTTTTGTTTGGTATCAT+AGG - chr5_1:8277182-8277201 Msa0715310:intron 40.0%
GATTATTTACAGGCAGCAGT+TGG - chr5_1:8277445-8277464 Msa0715310:intron 40.0%
CAGTTGAATGCCTTGAAAGA+AGG - chr5_1:8277596-8277615 Msa0715310:intron 40.0%
GTTGAATGCCTTGAAAGAAG+GGG - chr5_1:8277598-8277617 Msa0715310:intron 40.0%
TGCCCTATGATTTCAGTTTC+AGG - chr5_1:8277653-8277672 Msa0715310:five_prime_UTR 40.0%
GTGGTTGTCCAAAAAAAACC+AGG + chr5_1:8277697-8277716 None:intergenic 40.0%
ACCACAAATAATCCAGTGAG+AGG - chr5_1:8277712-8277731 Msa0715310:five_prime_UTR 40.0%
ACCTCTCACTGGATTATTTG+TGG + chr5_1:8277716-8277735 None:intergenic 40.0%
ATTACGAGAGTCCGATTCCT+CGG + chr5_1:8274143-8274162 None:intergenic 45.0%
GGAATCGGACTCTCGTAATT+TGG - chr5_1:8274144-8274163 Msa0715310:CDS 45.0%
AAAAGGAGGGAGCAGGAAAA+TGG - chr5_1:8274568-8274587 Msa0715310:intron 45.0%
!! TGAAAAAAGGGCGTCGAGAA+AGG - chr5_1:8274606-8274625 Msa0715310:intron 45.0%
! AGAGCACTCACTAGACCTTT+AGG - chr5_1:8274797-8274816 Msa0715310:CDS 45.0%
CTTACATGGGAAGGGAGATA+AGG + chr5_1:8274842-8274861 None:intergenic 45.0%
GGTGGTTCGATTAGAAGAGA+AGG - chr5_1:8275058-8275077 Msa0715310:intron 45.0%
CTGTCTACATTTCCTCCAAG+AGG - chr5_1:8275114-8275133 Msa0715310:intron 45.0%
! ATTTTCGGCATTCCTCTTGG+AGG + chr5_1:8275129-8275148 None:intergenic 45.0%
! CGAATTTTCGGCATTCCTCT+TGG + chr5_1:8275132-8275151 None:intergenic 45.0%
CGAAAATTCGATTGACCCGA+TGG - chr5_1:8275142-8275161 Msa0715310:intron 45.0%
TGATGGAATTCTGGTCCATC+GGG + chr5_1:8275160-8275179 None:intergenic 45.0%
CTTCTGGCAAGAGAAATCTG+AGG + chr5_1:8275248-8275267 None:intergenic 45.0%
ATACCATATGGATCACGTGG+AGG + chr5_1:8275703-8275722 None:intergenic 45.0%
CAGATACCATATGGATCACG+TGG + chr5_1:8275706-8275725 None:intergenic 45.0%
CATTCGGTTGAAATCAACGG+TGG + chr5_1:8275788-8275807 None:intergenic 45.0%
ACTTGCCTCTGTGAACTTGA+AGG - chr5_1:8275937-8275956 Msa0715310:CDS 45.0%
CTTGCCTCTGTGAACTTGAA+GGG - chr5_1:8275938-8275957 Msa0715310:CDS 45.0%
! AAGACCCTTCAAGTTCACAG+AGG + chr5_1:8275945-8275964 None:intergenic 45.0%
CATACCTGAGAGTCCTGAAA+TGG - chr5_1:8276198-8276217 Msa0715310:CDS 45.0%
ACAACCATTTCAGGACTCTC+AGG + chr5_1:8276205-8276224 None:intergenic 45.0%
TGACAGGCCACAATAGTAGT+GGG - chr5_1:8276445-8276464 Msa0715310:CDS 45.0%
! CTTTTAGACAGGTCTGTTGC+AGG + chr5_1:8276658-8276677 None:intergenic 45.0%
TTGCACTATCTTGTGGAAGC+TGG - chr5_1:8276747-8276766 Msa0715310:CDS 45.0%
AAGCGCTAAGCATAACTGTG+TGG - chr5_1:8276979-8276998 Msa0715310:CDS 45.0%
!!! TCCTACAAGCCGGTTTTGTT+TGG - chr5_1:8277173-8277192 Msa0715310:intron 45.0%
!! ACCAAACAAAACCGGCTTGT+AGG + chr5_1:8277177-8277196 None:intergenic 45.0%
ACTCGACTTTGCAAAGGACT+TGG - chr5_1:8277519-8277538 Msa0715310:intron 45.0%
TCAGTTCAACAGGTAGCTGA+AGG + chr5_1:8277567-8277586 None:intergenic 45.0%
GCTACCTGTTGAACTGAGAA+AGG - chr5_1:8277570-8277589 Msa0715310:intron 45.0%
GCTTCCTTTCTCAGTTCAAC+AGG + chr5_1:8277577-8277596 None:intergenic 45.0%
AATGCCTTGAAAGAAGGGGA+AGG - chr5_1:8277602-8277621 Msa0715310:CDS 45.0%
TTGCTTGTACACCAGTAACC+TGG - chr5_1:8277676-8277695 Msa0715310:five_prime_UTR 45.0%
ACATTAACAGCACCTCTCAC+TGG + chr5_1:8277727-8277746 None:intergenic 45.0%
ATGCTTACTGCTAAGTGCGA+AGG + chr5_1:8277906-8277925 None:intergenic 45.0%
!! CAAATAATAAAAAAAAAATA+TGG + chr5_1:8273683-8273702 None:intergenic 5.0%
!!! TATATATTTTTATTTTATGA+AGG - chr5_1:8277369-8277388 Msa0715310:intron 5.0%
TTACGAGAGTCCGATTCCTC+GGG + chr5_1:8274142-8274161 None:intergenic 50.0%
AGATGGAAAAAGGAGGGAGC+AGG - chr5_1:8274561-8274580 Msa0715310:intron 50.0%
!! AGGGCGTCGAGAAAGGAAAA+TGG - chr5_1:8274613-8274632 Msa0715310:intron 50.0%
!! AGACGAGGAAGTGCTCCTAA+AGG + chr5_1:8274815-8274834 None:intergenic 50.0%
ACATGGGAAGGGAGATAAGG+AGG + chr5_1:8274839-8274858 None:intergenic 50.0%
AGAGCTTGTGGCTGAAGTTG+CGG - chr5_1:8275022-8275041 Msa0715310:intron 50.0%
TGTGGCTGAAGTTGCGGTAT+TGG - chr5_1:8275028-8275047 Msa0715310:intron 50.0%
! AGTTGCGGTATTGGAGGAAG+AGG - chr5_1:8275037-8275056 Msa0715310:intron 50.0%
TGCAGATCACGTGAAGTTGC+AGG - chr5_1:8275424-8275443 Msa0715310:intron 50.0%
ACACCTCCACGTGATCCATA+TGG - chr5_1:8275697-8275716 Msa0715310:intron 50.0%
TCGGTTGAAATCAACGGTGG+AGG + chr5_1:8275785-8275804 None:intergenic 50.0%
CTTGAAGGGTCTTACTCACC+AGG - chr5_1:8275952-8275971 Msa0715310:CDS 50.0%
!! GGTTGTAGCACTGATGCAGA+AGG - chr5_1:8276219-8276238 Msa0715310:CDS 50.0%
GTGACAGGCCACAATAGTAG+TGG - chr5_1:8276444-8276463 Msa0715310:CDS 50.0%
GACAGGCCACAATAGTAGTG+GGG - chr5_1:8276446-8276465 Msa0715310:CDS 50.0%
ACAGGCCACAATAGTAGTGG+GGG - chr5_1:8276447-8276466 Msa0715310:CDS 50.0%
ACCTTGCTGGATAATCCGAG+TGG + chr5_1:8277134-8277153 None:intergenic 50.0%
TAAGCCCTACTGTACCTTGC+TGG + chr5_1:8277147-8277166 None:intergenic 50.0%
AAGGCAGCCTCTTTCACACA+TGG - chr5_1:8277621-8277640 Msa0715310:exon 50.0%
CAGAGCACACACCACTCTTC+AGG - chr5_1:8273939-8273958 Msa0715310:CDS 55.0%
GGGAGATAAGGAGGAAGACG+AGG + chr5_1:8274830-8274849 None:intergenic 55.0%
! GGCTGAAGTTGCGGTATTGG+AGG - chr5_1:8275031-8275050 Msa0715310:intron 55.0%
! TGCGGTATTGGAGGAAGAGG+TGG - chr5_1:8275040-8275059 Msa0715310:intron 55.0%
! CAGGCCACAATAGTAGTGGG+GGG - chr5_1:8276448-8276467 Msa0715310:CDS 55.0%
GTGTCCCCCCACTACTATTG+TGG + chr5_1:8276455-8276474 None:intergenic 55.0%
GCCACTCGGATTATCCAGCA+AGG - chr5_1:8277130-8277149 Msa0715310:intron 55.0%
GCTGCCTTCCCCTTCTTTCA+AGG + chr5_1:8277609-8277628 None:intergenic 55.0%
ACCCTTCGGTCCCGAGGAAT+CGG - chr5_1:8274129-8274148 Msa0715310:CDS 60.0%
TCCGATTCCTCGGGACCGAA+GGG + chr5_1:8274133-8274152 None:intergenic 60.0%
AGTGGGGGGACACTTGCTCA+AGG - chr5_1:8276462-8276481 Msa0715310:CDS 60.0%
TGGAAGCTGGTCATCACCCG+TGG - chr5_1:8276760-8276779 Msa0715310:CDS 60.0%
GGTCTTACCCTTCGGTCCCG+AGG - chr5_1:8274123-8274142 Msa0715310:CDS 65.0%
GTCCGATTCCTCGGGACCGA+AGG + chr5_1:8274134-8274153 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 8273551 8278011 8273551 ID=Msa0715310;Name=Msa0715310
chr5_1 mRNA 8273551 8278011 8273551 ID=Msa0715310-mRNA-1;Parent=Msa0715310;Name=Msa0715310-mRNA-1;_AED=0.17;_eAED=0.18;_QI=380|0.87|0.88|1|0.87|0.88|9|318|539
chr5_1 exon 8273551 8274171 8273551 ID=Msa0715310-mRNA-1:exon:3452;Parent=Msa0715310-mRNA-1
chr5_1 exon 8274781 8274960 8274781 ID=Msa0715310-mRNA-1:exon:3451;Parent=Msa0715310-mRNA-1
chr5_1 exon 8275322 8275381 8275322 ID=Msa0715310-mRNA-1:exon:3450;Parent=Msa0715310-mRNA-1
chr5_1 exon 8275541 8275640 8275541 ID=Msa0715310-mRNA-1:exon:3449;Parent=Msa0715310-mRNA-1
chr5_1 exon 8275723 8276030 8275723 ID=Msa0715310-mRNA-1:exon:3448;Parent=Msa0715310-mRNA-1
chr5_1 exon 8276117 8276545 8276117 ID=Msa0715310-mRNA-1:exon:3447;Parent=Msa0715310-mRNA-1
chr5_1 exon 8276706 8276822 8276706 ID=Msa0715310-mRNA-1:exon:3446;Parent=Msa0715310-mRNA-1
chr5_1 exon 8276913 8277005 8276913 ID=Msa0715310-mRNA-1:exon:3445;Parent=Msa0715310-mRNA-1
chr5_1 exon 8277602 8278011 8277602 ID=Msa0715310-mRNA-1:exon:3444;Parent=Msa0715310-mRNA-1
chr5_1 five_prime_UTR 8277632 8278011 8277632 ID=Msa0715310-mRNA-1:five_prime_utr;Parent=Msa0715310-mRNA-1
chr5_1 CDS 8277602 8277631 8277602 ID=Msa0715310-mRNA-1:cds;Parent=Msa0715310-mRNA-1
chr5_1 CDS 8276913 8277005 8276913 ID=Msa0715310-mRNA-1:cds;Parent=Msa0715310-mRNA-1
chr5_1 CDS 8276706 8276822 8276706 ID=Msa0715310-mRNA-1:cds;Parent=Msa0715310-mRNA-1
chr5_1 CDS 8276117 8276545 8276117 ID=Msa0715310-mRNA-1:cds;Parent=Msa0715310-mRNA-1
chr5_1 CDS 8275723 8276030 8275723 ID=Msa0715310-mRNA-1:cds;Parent=Msa0715310-mRNA-1
chr5_1 CDS 8275541 8275640 8275541 ID=Msa0715310-mRNA-1:cds;Parent=Msa0715310-mRNA-1
chr5_1 CDS 8275322 8275381 8275322 ID=Msa0715310-mRNA-1:cds;Parent=Msa0715310-mRNA-1
chr5_1 CDS 8274781 8274960 8274781 ID=Msa0715310-mRNA-1:cds;Parent=Msa0715310-mRNA-1
chr5_1 CDS 8273869 8274171 8273869 ID=Msa0715310-mRNA-1:cds;Parent=Msa0715310-mRNA-1
chr5_1 three_prime_UTR 8273551 8273868 8273551 ID=Msa0715310-mRNA-1:three_prime_utr;Parent=Msa0715310-mRNA-1
Gene Sequence

>Msa0715310

ATGAGTAGCAGAGCACACACCACTCTTCAGGAAAAGATGGAAAAAGGAGGGAGCAGGAAAATGGCTGCACATAATACTTTGAAAAAAGGGCGTCGAGAAAGGAAAATGGCTTTGATACAAGATGTTGATAAGTTAAAGAGGAAGCTAAGACATGAAGAGAATGTTCATAGAGTGTTAGAAAGAGCACTCACTAGACCTTTAGGAGCACTTCCTCGTCTTCCTCCTTATCTCCCTTCCCATACATTAGAGCTTGTGGCTGAAGTTGCGGTATTGGAGGAAGAGGTGGTTCGATTAGAAGAGAAGGTTGTGAATTTCAGACAAGGTTTATATCAGGAAGCTGTCTACATTTCCTCCAAGAGGAATGCCGAAAATTCGATTGACCCGATGGACCAGAATTCCATCAAAGGATCCAAACATCAAAGGTCAAAATCATTGTCTCAAAGTGAGCTTAATTCTACAACCATTAGGCCTCAGATTTCTCTTGCCAGAAGTGCTTCTAGTAGAAAGCTAGTCAATGGGAAGCAATTGCATTCCAAACAAGACTCCTTATCTTCAATACCAGAAGAGAAATCTATTGAAAAGAAAATGGCTAAAGTCATCACTCCAGTGAAGAAATCACCAAGCAAACAAGAATCAGTTGACAAGTGTGCAGATCACGTGAAGTTGCAGCTGGAGAAGAGATTAGTAGATCAAGAAAGAGCACAAAATTCATCAGACGATAAGGTGTTAGAAGTTGATAGGACACCAAATAGAGTTTCAGAGGATATAGTCAAGTGTTTGTGTAGCATATTTATGAGAATTTCCATATTCAAGGACAATCTAGGAGAATCGAAAACACCTCCACGTGATCCATATGGTATCTGTTCAATATCGAAAACTAGAGATATTGGTGCCTACAATAGTTTTTGTGAGATTGAAGCCTCCACCGTTGATTTCAACCGAATGAAAAATTCAGTGTTTCTCATCAATCGATTAAAGTTTTTATTTGGGAAACTTGCCTCTGTGAACTTGAAGGGTCTTACTCACCAGGAGAAACTTGCATTTTGGATAAACACTTATAATTCCTGTATGATGAATGCATATTTAGAGCATGGCATACCTGAGAGTCCTGAAATGGTTGTAGCACTGATGCAGAAGTCCTTGTTATGCTTTGTAGATTACAATTCATCTCTTGATTTTCATCTTTGCTTCCTGCAACAGACCTGTCTAAAAGCTGCAAAAAATGATGAGATGAAAGCAAGAGGCATATTTGGTTTGGAATGGTCTGAACCTTTGGTTACATTTGCACTATCTTGTGGAAGCTGGTCATCACCCGTGGTAAGGGTGTACACAGCATCACAAGTTGATAATGAGTTAGAAGCAGCAAAGAGAGATTATTTACAGGCAGCAGTTGGCATTACAAAAACAAATAAGTTAATAATTCCAAAGATACTTGACTGGTTTTTACTCGACTTTGCAAAGGACTTGGAATCTTTGTTGGATTGGGTCTGCCTTCAGCTACCTGTTGAACTGAGAAAGGAAGCAGTTGAATGCCTTGAAAGAAGGGGAAGGCAGCCTCTTTCACACATGGTACATATGATGCCCTATGATTTCAGTTTCAGGTTGCTTGTACACCAGTAA

Protein sequence

>Msa0715310

MSSRAHTTLQEKMEKGGSRKMAAHNTLKKGRRERKMALIQDVDKLKRKLRHEENVHRVLERALTRPLGALPRLPPYLPSHTLELVAEVAVLEEEVVRLEEKVVNFRQGLYQEAVYISSKRNAENSIDPMDQNSIKGSKHQRSKSLSQSELNSTTIRPQISLARSASSRKLVNGKQLHSKQDSLSSIPEEKSIEKKMAKVITPVKKSPSKQESVDKCADHVKLQLEKRLVDQERAQNSSDDKVLEVDRTPNRVSEDIVKCLCSIFMRISIFKDNLGESKTPPRDPYGICSISKTRDIGAYNSFCEIEASTVDFNRMKNSVFLINRLKFLFGKLASVNLKGLTHQEKLAFWINTYNSCMMNAYLEHGIPESPEMVVALMQKSLLCFVDYNSSLDFHLCFLQQTCLKAAKNDEMKARGIFGLEWSEPLVTFALSCGSWSSPVVRVYTASQVDNELEAAKRDYLQAAVGITKTNKLIIPKILDWFLLDFAKDLESLLDWVCLQLPVELRKEAVECLERRGRQPLSHMVHMMPYDFSFRLLVHQ*