AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0836680

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0836680 MtrunA17_Chr5g0402501 93.833 227 11 1 1 227 1 224 4.06e-129 375
Msa0836680 MtrunA17_Chr8g0374741 61.742 264 55 8 1 227 1 255 6.38e-65 211
Msa0836680 MtrunA17_Chr3g0133631 44.949 198 87 8 25 218 47 226 1.94e-30 118
Msa0836680 MtrunA17_Chr1g0153951 57.447 141 48 3 33 164 18 155 1.25e-25 104
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0836680 AT4G37080.4 48.529 272 86 9 6 227 23 290 1.39e-43 153
Msa0836680 AT4G37080.2 48.529 272 86 9 6 227 23 290 6.79e-43 153
Msa0836680 AT4G37080.3 48.529 272 86 9 6 227 23 290 6.79e-43 153
Msa0836680 AT4G37080.1 48.881 268 83 9 10 227 14 277 1.17e-42 152
Msa0836680 AT5G42690.1 65.556 90 28 1 32 121 49 135 4.48e-15 74.3
Msa0836680 AT5G42690.5 65.556 90 28 1 32 121 22 108 4.51e-15 74.3
Msa0836680 AT5G42690.2 65.556 90 28 1 32 121 49 135 4.53e-15 74.3
Msa0836680 AT5G42690.4 65.556 90 28 1 32 121 49 135 4.53e-15 74.3
Msa0836680 AT5G42690.3 65.116 86 27 1 36 121 1 83 5.27e-13 68.2

Find 125 sgRNAs with CRISPR-Local

Find 263 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTGTTGTTTGTGAATTAT+TGG 0.137250 5_4:+10290725 Msa0836680:five_prime_UTR
GCACATCAAATAGTAATTAT+TGG 0.146685 5_4:-10292408 None:intergenic
TCCTAGATTGTCCTTGAATA+TGG 0.203016 5_4:-10292613 None:intergenic
GGACGATGTCTGTTTGTTTA+AGG 0.204288 5_4:-10290576 None:intergenic
ACCAGGAGAAACTTGCATTT+TGG 0.212496 5_4:+10292917 Msa0836680:three_prime_UTR
TGCCCTATGATTTCAGTTTC+AGG 0.214439 5_4:+10294601 Msa0836680:three_prime_UTR
ATGAAAGCAAGAGGCATATT+TGG 0.216429 5_4:+10293643 Msa0836680:three_prime_UTR
TGGATCCTTTGATGGAATTC+TGG 0.239508 5_4:-10292114 None:intergenic
ATATCCTCTGAAACTCTATT+TGG 0.284459 5_4:-10292555 None:intergenic
CTTGGAATCTTTGTTGGATT+GGG 0.291306 5_4:+10294485 Msa0836680:three_prime_UTR
CAAGTAATGTTTCCTTTGAT+AGG 0.299053 5_4:+10294769 Msa0836680:three_prime_UTR
GCTTGTGTAAAGTACCAATA+TGG 0.316724 5_4:-10290503 None:intergenic
GAAATCTATTGAAAAGAAAA+TGG 0.326415 5_4:+10292291 Msa0836680:CDS
CTTTCTACTAGAAGCACTTC+TGG 0.332145 5_4:-10292209 None:intergenic
AGCAAGAGGCATATTTGGTT+TGG 0.336129 5_4:+10293648 Msa0836680:three_prime_UTR
GACCTTTGTAAACTGCAATA+AGG 0.339529 5_4:+10294797 Msa0836680:three_prime_UTR
CTCTTCTGGTATTGAAGATA+AGG 0.350268 5_4:-10292269 None:intergenic
TGAAGATAAGGAGTCTTGTT+TGG 0.352746 5_4:-10292257 None:intergenic
TTTCAGACAAGGTTTATATC+AGG 0.354150 5_4:+10292036 Msa0836680:CDS
TTGTCATCATTATCCCATAT+TGG 0.354486 5_4:+10290489 None:intergenic
AGAGCACTCACTAGACCTTT+AGG 0.357274 5_4:+10291745 Msa0836680:CDS
TATGAGAATTTCCATATTCA+AGG 0.365612 5_4:+10292602 Msa0836680:three_prime_UTR
TTGCTTGGTGATTTCTTCAC+TGG 0.366646 5_4:-10292328 None:intergenic
AGCAAAGAGAGATTATTTAC+AGG 0.366908 5_4:+10294383 Msa0836680:three_prime_UTR
TTGATGTTTGGATCCTTTGA+TGG 0.368156 5_4:-10292122 None:intergenic
TCAACTGATTCTTGTTTGCT+TGG 0.368635 5_4:-10292343 None:intergenic
ATCAGTGCTACAACCATTTC+AGG 0.373611 5_4:-10293159 None:intergenic
AAAAGGAGGGAGCAGGAAAA+TGG 0.374679 5_4:+10291516 Msa0836680:CDS
ACCTCTCACTGGATTATTTG+TGG 0.376104 5_4:-10294661 None:intergenic
GCTGCCTTCCCCTTCTTTCA+AGG 0.376152 5_4:-10294554 None:intergenic
CAACCTGAAACTGAAATCAT+AGG 0.378498 5_4:-10294604 None:intergenic
ATATCGAAAACTAGAGATAT+TGG 0.379801 5_4:+10292678 Msa0836680:three_prime_UTR
CAGAGCACACACCACTCTTC+AGG 0.383282 5_4:+10290880 Msa0836680:CDS
AAGCAGGAAAAGATGGAAAA+AGG 0.383928 5_4:+10291499 Msa0836680:intron
ACTTGGAATCTTTGTTGGAT+TGG 0.390859 5_4:+10294484 Msa0836680:three_prime_UTR
TTTGGAATGGTCTGAACCTT+TGG 0.394809 5_4:+10293666 Msa0836680:three_prime_UTR
TCCATATTCAAGGACAATCT+AGG 0.414001 5_4:+10292612 Msa0836680:three_prime_UTR
AAAGGACTTGGAATCTTTGT+TGG 0.415429 5_4:+10294479 Msa0836680:three_prime_UTR
TGTGGCTGAAGTTGCGGTAT+TGG 0.415617 5_4:+10291976 Msa0836680:CDS
AGGGCGTCGAGAAAGGAAAA+TGG 0.421258 5_4:+10291561 Msa0836680:CDS
GATATTGAACAGATACCATA+TGG 0.422044 5_4:-10292660 None:intergenic
GCTTCCTTTCTCAGTTCAAC+AGG 0.438309 5_4:-10294522 None:intergenic
TGCAGATCACGTGAAGTTGC+AGG 0.442494 5_4:+10292372 Msa0836680:CDS
CTTACATAATTCAAGTGATA+AGG 0.444130 5_4:-10293465 None:intergenic
TAACAATACTACAGCAGAAA+AGG 0.445312 5_4:-10290807 None:intergenic
TCCAAAATGCAAGTTTCTCC+TGG 0.448612 5_4:-10292918 None:intergenic
AAGAGAAATCTGAGGCCTAA+TGG 0.449344 5_4:-10292185 None:intergenic
ACAAAATTCATCAGACGATA+AGG 0.452744 5_4:+10292512 Msa0836680:three_prime_UTR
ATAAGGTGTTAGAAGTTGAT+AGG 0.456293 5_4:+10292529 Msa0836680:three_prime_UTR
AGCTTAATTCTACAACCATT+AGG 0.459006 5_4:+10292170 Msa0836680:CDS
AAGTAATGTTTCCTTTGATA+GGG 0.461447 5_4:+10294770 Msa0836680:three_prime_UTR
TCTAGTAGAAAGCTAGTCAA+TGG 0.462544 5_4:+10292220 Msa0836680:CDS
TGCAGGTTGATAAGTTAAAG+AGG 0.463381 5_4:+10291683 Msa0836680:intron
ACTTGCCTCTGTGAACTTGA+AGG 0.469270 5_4:+10292885 Msa0836680:three_prime_UTR
CAGTTGAATGCCTTGAAAGA+AGG 0.473839 5_4:+10294544 Msa0836680:three_prime_UTR
TTGCACTATCTTGTGGAAGC+TGG 0.481719 5_4:+10293695 Msa0836680:three_prime_UTR
ATGTGCAAAGCAGGAAAAGA+TGG 0.484944 5_4:+10291492 Msa0836680:intron
ACTCGACTTTGCAAAGGACT+TGG 0.489476 5_4:+10294467 Msa0836680:three_prime_UTR
TTGATGGAATTCTGGTCCAT+CGG 0.493905 5_4:-10292106 None:intergenic
GGTGGTTCGATTAGAAGAGA+AGG 0.495299 5_4:+10292006 Msa0836680:CDS
CTTACATGGGAAGGGAGATA+AGG 0.496981 5_4:-10291787 None:intergenic
TGATGGAATTCTGGTCCATC+GGG 0.498652 5_4:-10292105 None:intergenic
TATAGTACAATTCATGGAGC+GGG 0.499634 5_4:-10290678 None:intergenic
ACATTAACAGCACCTCTCAC+TGG 0.505947 5_4:-10294672 None:intergenic
CTTTCATTAGTCATTATATG+AGG 0.506223 5_4:+10290539 Msa0836680:five_prime_UTR
GTTACATTTGCACTATCTTG+TGG 0.506373 5_4:+10293688 Msa0836680:three_prime_UTR
AGTTGAATGCCTTGAAAGAA+GGG 0.509505 5_4:+10294545 Msa0836680:three_prime_UTR
CTAGTAGAAAGCTAGTCAAT+GGG 0.511137 5_4:+10292221 Msa0836680:CDS
ACACCTCCACGTGATCCATA+TGG 0.511970 5_4:+10292645 Msa0836680:three_prime_UTR
ACAACCATTTCAGGACTCTC+AGG 0.512777 5_4:-10293150 None:intergenic
GAGGCATATTTGGTTTGGAA+TGG 0.523893 5_4:+10293653 Msa0836680:three_prime_UTR
GGGAGATAAGGAGGAAGACG+AGG 0.525815 5_4:-10291775 None:intergenic
GCTACCTGTTGAACTGAGAA+AGG 0.530299 5_4:+10294518 Msa0836680:three_prime_UTR
TTTCATTCGGTTGAAATCAA+CGG 0.530335 5_4:-10292736 None:intergenic
CTTAATCTACTTACATGGGA+AGG 0.531642 5_4:-10291796 None:intergenic
GATTATTTACAGGCAGCAGT+TGG 0.534652 5_4:+10294393 Msa0836680:three_prime_UTR
TTGCTTGTACACCAGTAACC+TGG 0.536984 5_4:+10294624 Msa0836680:three_prime_UTR
TAATTCCAAAGATACTTGAC+TGG 0.540269 5_4:+10294439 Msa0836680:three_prime_UTR
CTTGTGTAAAGTACCAATAT+GGG 0.540704 5_4:-10290502 None:intergenic
GTATCTTACATTCATCATAC+AGG 0.540740 5_4:-10292956 None:intergenic
GGCTGAAGTTGCGGTATTGG+AGG 0.545349 5_4:+10291979 Msa0836680:CDS
CATACCTGAGAGTCCTGAAA+TGG 0.549579 5_4:+10293146 Msa0836680:three_prime_UTR
CTTGAAGGGTCTTACTCACC+AGG 0.555043 5_4:+10292900 Msa0836680:three_prime_UTR
TCGGTTGAAATCAACGGTGG+AGG 0.556026 5_4:-10292730 None:intergenic
AACCTGAAACTGAAATCATA+GGG 0.561621 5_4:-10294603 None:intergenic
CGAAAATTCGATTGACCCGA+TGG 0.561722 5_4:+10292090 Msa0836680:CDS
TTGTAGGCATATTTAGAGCA+TGG 0.564337 5_4:+10293123 Msa0836680:intron
TGACAGGCCACAATAGTAGT+GGG 0.565218 5_4:+10293393 Msa0836680:intron
GACCTTATTGCAGTTTACAA+AGG 0.565949 5_4:-10294799 None:intergenic
AGAGCTTGTGGCTGAAGTTG+CGG 0.570036 5_4:+10291970 Msa0836680:CDS
AGTTGCGGTATTGGAGGAAG+AGG 0.573287 5_4:+10291985 Msa0836680:CDS
AGACGAGGAAGTGCTCCTAA+AGG 0.579607 5_4:-10291760 None:intergenic
TCAGTTCAACAGGTAGCTGA+AGG 0.581607 5_4:-10294512 None:intergenic
ATATGTACCATGTGTGAAAG+AGG 0.585157 5_4:-10294576 None:intergenic
CTTGCCTCTGTGAACTTGAA+GGG 0.587168 5_4:+10292886 Msa0836680:three_prime_UTR
AAAGGTCAAAACCCTATCAA+AGG 0.588642 5_4:-10294781 None:intergenic
GTGACAGGCCACAATAGTAG+TGG 0.594519 5_4:+10293392 Msa0836680:intron
TGCGGTATTGGAGGAAGAGG+TGG 0.595764 5_4:+10291988 Msa0836680:CDS
AATGATGAGATGAAAGCAAG+AGG 0.596232 5_4:+10293634 Msa0836680:three_prime_UTR
TTAATCTACTTACATGGGAA+GGG 0.597323 5_4:-10291795 None:intergenic
CAGATACCATATGGATCACG+TGG 0.601566 5_4:-10292651 None:intergenic
GACACCAAATAGAGTTTCAG+AGG 0.605334 5_4:+10292551 Msa0836680:three_prime_UTR
CTGTCTACATTTCCTCCAAG+AGG 0.607010 5_4:+10292062 Msa0836680:CDS
CATGGTGAAAACAAATGAGA+AGG 0.607667 5_4:-10290597 None:intergenic
ATGGACCAGAATTCCATCAA+AGG 0.609091 5_4:+10292109 Msa0836680:CDS
TCAAAGGATCCAAACATCAA+AGG 0.609297 5_4:+10292125 Msa0836680:CDS
ATGCTTACTGCTAAGTGCGA+AGG 0.612958 5_4:-10294851 None:intergenic
GATAGTGCAAATGTAACCAA+AGG 0.614690 5_4:-10293682 None:intergenic
CATTCGGTTGAAATCAACGG+TGG 0.616978 5_4:-10292733 None:intergenic
ACAGGCCACAATAGTAGTGG+GGG 0.633577 5_4:+10293395 Msa0836680:intron
TGGAAGCTGGTCATCACCCG+TGG 0.637861 5_4:+10293708 Msa0836680:three_prime_UTR
TTATAGTACAATTCATGGAG+CGG 0.642892 5_4:-10290679 None:intergenic
ACATGGGAAGGGAGATAAGG+AGG 0.643159 5_4:-10291784 None:intergenic
TTGATTGATTACCTGAAGAG+TGG 0.645456 5_4:-10290891 None:intergenic
AAGGTTGTGAATTTCAGACA+AGG 0.655478 5_4:+10292025 Msa0836680:CDS
GGTTGTAGCACTGATGCAGA+AGG 0.659494 5_4:+10293167 Msa0836680:three_prime_UTR
GACAGGCCACAATAGTAGTG+GGG 0.662710 5_4:+10293394 Msa0836680:intron
ACCACAAATAATCCAGTGAG+AGG 0.668723 5_4:+10294660 Msa0836680:three_prime_UTR
GTTGAATGCCTTGAAAGAAG+GGG 0.670351 5_4:+10294546 Msa0836680:three_prime_UTR
AATGCCTTGAAAGAAGGGGA+AGG 0.676784 5_4:+10294550 Msa0836680:three_prime_UTR
AAGGCAGCCTCTTTCACACA+TGG 0.686885 5_4:+10294569 Msa0836680:three_prime_UTR
CAGGCCACAATAGTAGTGGG+GGG 0.734448 5_4:+10293396 Msa0836680:intron
CTTCTGGCAAGAGAAATCTG+AGG 0.757425 5_4:-10292193 None:intergenic
ATACCATATGGATCACGTGG+AGG 0.760579 5_4:-10292648 None:intergenic
AAGACCCTTCAAGTTCACAG+AGG 0.790606 5_4:-10292890 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATCAATGTATTTATTA+AGG + chr5_4:10294269-10294288 Msa0836680:intron 10.0%
!! AAATAATACAAAAACAAAAA+AGG + chr5_4:10294929-10294948 Msa0836680:three_prime_UTR 10.0%
!! AATAATACAAAAACAAAAAA+GGG + chr5_4:10294930-10294949 Msa0836680:three_prime_UTR 10.0%
!!! TTTTTTTTTCTTTCTCTTTA+TGG + chr5_4:10290951-10290970 Msa0836680:intron 15.0%
!! GAAAAACAAATAAAGAAAAT+TGG - chr5_4:10290977-10290996 None:intergenic 15.0%
!! AATTGAGAAAAATAAGAAAT+TGG + chr5_4:10291286-10291305 Msa0836680:intron 15.0%
!! AATGCTTATCTAAATATAAT+TGG - chr5_4:10293345-10293364 None:intergenic 15.0%
!!! ACATTAACTATTTTCTTTTT+CGG + chr5_4:10293772-10293791 Msa0836680:intron 15.0%
!!! TATATATGAAAATTTGTTTC+AGG + chr5_4:10293854-10293873 Msa0836680:intron 15.0%
!!! ATATATGAAAATTTGTTTCA+GGG + chr5_4:10293855-10293874 Msa0836680:intron 15.0%
!!! ATCTATCATAAATTTGTTAT+CGG + chr5_4:10294055-10294074 Msa0836680:intron 15.0%
!!! ATTTTTATTTTATGAAGGTA+AGG + chr5_4:10294322-10294341 Msa0836680:intron 15.0%
!!! TTTTTATTTTATGAAGGTAA+GGG + chr5_4:10294323-10294342 Msa0836680:intron 15.0%
!! ATAATACAAAAACAAAAAAG+GGG + chr5_4:10294931-10294950 Msa0836680:three_prime_UTR 15.0%
!! AAAAAAAATATGGAAGAACA+TGG - chr5_4:10290618-10290637 None:intergenic 20.0%
!!! AGATTTTATAGTACAATTCA+TGG - chr5_4:10290687-10290706 None:intergenic 20.0%
!! ATCAAAATTCCTTCAAAAAA+CGG + chr5_4:10290909-10290928 Msa0836680:intron 20.0%
!!! TTTTCTGTTTGATATTTGTA+AGG + chr5_4:10290992-10291011 Msa0836680:intron 20.0%
!!! TTCTCATGTTTTTTTTTTGT+TGG + chr5_4:10291050-10291069 Msa0836680:intron 20.0%
!!! CACATAATACTTTGAAAAAA+GGG + chr5_4:10291542-10291561 Msa0836680:CDS 20.0%
!! GAAATCTATTGAAAAGAAAA+TGG + chr5_4:10292291-10292310 Msa0836680:CDS 20.0%
!! TCGATTAAAGTAAGTTATAA+AGG + chr5_4:10292779-10292798 Msa0836680:intron 20.0%
!! CGATTAAAGTAAGTTATAAA+GGG + chr5_4:10292780-10292799 Msa0836680:intron 20.0%
!! CAATTATTTGGTTATATTGT+AGG + chr5_4:10293107-10293126 Msa0836680:intron 20.0%
!!! ATTTTCATATATACTAGTCA+AGG - chr5_4:10293847-10293866 None:intergenic 20.0%
!!! TCTATCATAAATTTGTTATC+GGG + chr5_4:10294056-10294075 Msa0836680:intron 20.0%
!! AAAATTAGAAAAGTGGAAAT+TGG - chr5_4:10294200-10294219 None:intergenic 20.0%
!!! AATGTATTTATTAAGGCATT+TGG + chr5_4:10294276-10294295 Msa0836680:intron 20.0%
!! TAATACAAAAACAAAAAAGG+GGG + chr5_4:10294932-10294951 Msa0836680:three_prime_UTR 20.0%
! CTTTCATTAGTCATTATATG+AGG + chr5_4:10290539-10290558 Msa0836680:five_prime_UTR 25.0%
! AAGAAACAAATGACCATTTA+AGG + chr5_4:10291019-10291038 Msa0836680:intron 25.0%
!!! TAAGTGTTACTTTAACAGTT+AGG + chr5_4:10291329-10291348 Msa0836680:intron 25.0%
! AATAACATAGTTCTCAGATT+TGG - chr5_4:10291370-10291389 None:intergenic 25.0%
! AAATGAGAAAGAAAGATAGA+AGG - chr5_4:10291428-10291447 None:intergenic 25.0%
!! GCACATAATACTTTGAAAAA+AGG + chr5_4:10291541-10291560 Msa0836680:CDS 25.0%
! GTAGAACAATTAATAATGCA+AGG - chr5_4:10291617-10291636 None:intergenic 25.0%
! ATGCATTGAATACAATTGAT+CGG - chr5_4:10291856-10291875 None:intergenic 25.0%
! TCAATTGTATTCAATGCATT+TGG + chr5_4:10291857-10291876 Msa0836680:intron 25.0%
!! TTTTCAATAGATTTCTCTTC+TGG - chr5_4:10292286-10292305 None:intergenic 25.0%
! GCACATCAAATAGTAATTAT+TGG - chr5_4:10292411-10292430 None:intergenic 25.0%
! TATGAGAATTTCCATATTCA+AGG + chr5_4:10292602-10292621 Msa0836680:three_prime_UTR 25.0%
! ATATCGAAAACTAGAGATAT+TGG + chr5_4:10292678-10292697 Msa0836680:three_prime_UTR 25.0%
! AATCTCACAAAAACTATTGT+AGG - chr5_4:10292706-10292725 None:intergenic 25.0%
!! GAAACACTGAATTTTTCATT+CGG - chr5_4:10292752-10292771 None:intergenic 25.0%
!!! CTTTTTGTTGATTCTACATA+TGG + chr5_4:10292810-10292829 Msa0836680:intron 25.0%
! CTTACATAATTCAAGTGATA+AGG - chr5_4:10293468-10293487 None:intergenic 25.0%
! TAGATGAAAATATTGTTCTG+TGG + chr5_4:10293749-10293768 Msa0836680:intron 25.0%
! ATAGTTATCATTCTTGATGT+GGG + chr5_4:10294239-10294258 Msa0836680:intron 25.0%
!! ATTTTTGAACTTTGATGTTC+TGG + chr5_4:10294708-10294727 Msa0836680:three_prime_UTR 25.0%
!!! ATGTTCTGGATTTTGTATAT+TGG + chr5_4:10294722-10294741 Msa0836680:three_prime_UTR 25.0%
! AAGTAATGTTTCCTTTGATA+GGG + chr5_4:10294770-10294789 Msa0836680:three_prime_UTR 25.0%
! TACAGTCTGTGAAAAAAAAA+GGG - chr5_4:10294824-10294843 None:intergenic 25.0%
! TTACAGTCTGTGAAAAAAAA+AGG - chr5_4:10294825-10294844 None:intergenic 25.0%
!!! TTTTTTCACAGACTGTAATA+AGG + chr5_4:10294827-10294846 Msa0836680:three_prime_UTR 25.0%
! CTTGTGTAAAGTACCAATAT+GGG - chr5_4:10290505-10290524 None:intergenic 30.0%
TTATAGTACAATTCATGGAG+CGG - chr5_4:10290682-10290701 None:intergenic 30.0%
! CTCTGTTGTTTGTGAATTAT+TGG + chr5_4:10290725-10290744 Msa0836680:five_prime_UTR 30.0%
TAACAATACTACAGCAGAAA+AGG - chr5_4:10290810-10290829 None:intergenic 30.0%
!!! TTTCTTGTTTTGTGTGAAAG+TGG + chr5_4:10290845-10290864 Msa0836680:five_prime_UTR 30.0%
!!! AATAGTTTGCCGTTTTTTGA+AGG - chr5_4:10290921-10290940 None:intergenic 30.0%
! AAATGACCATTTAAGGTTGT+TGG + chr5_4:10291026-10291045 Msa0836680:intron 30.0%
!!! AACCACTTGGTTTTGAATAT+AGG + chr5_4:10291219-10291238 Msa0836680:intron 30.0%
TTAATCTACTTACATGGGAA+GGG - chr5_4:10291798-10291817 None:intergenic 30.0%
CTGACTTAATCTACTTACAT+GGG - chr5_4:10291803-10291822 None:intergenic 30.0%
! ACTGACTTAATCTACTTACA+TGG - chr5_4:10291804-10291823 None:intergenic 30.0%
! ATTTTAGACATTAGAGCTTG+TGG + chr5_4:10291958-10291977 Msa0836680:intron 30.0%
TTTCAGACAAGGTTTATATC+AGG + chr5_4:10292036-10292055 Msa0836680:CDS 30.0%
!! TGATTTTGACCTTTGATGTT+TGG - chr5_4:10292137-10292156 None:intergenic 30.0%
AGCTTAATTCTACAACCATT+AGG + chr5_4:10292170-10292189 Msa0836680:CDS 30.0%
!! TTTTGTTTCGATTAATCAGC+TGG + chr5_4:10292461-10292480 Msa0836680:three_prime_UTR 30.0%
ACAAAATTCATCAGACGATA+AGG + chr5_4:10292512-10292531 Msa0836680:three_prime_UTR 30.0%
! ATAAGGTGTTAGAAGTTGAT+AGG + chr5_4:10292529-10292548 Msa0836680:three_prime_UTR 30.0%
!! ATATCCTCTGAAACTCTATT+TGG - chr5_4:10292558-10292577 None:intergenic 30.0%
GATATTGAACAGATACCATA+TGG - chr5_4:10292663-10292682 None:intergenic 30.0%
TTTCATTCGGTTGAAATCAA+CGG - chr5_4:10292739-10292758 None:intergenic 30.0%
!! ACATGTCCAGGTTTTTATTT+GGG + chr5_4:10292860-10292879 Msa0836680:intron 30.0%
AAGTTTCCCAAATAAAAACC+TGG - chr5_4:10292869-10292888 None:intergenic 30.0%
GTATCTTACATTCATCATAC+AGG - chr5_4:10292959-10292978 None:intergenic 30.0%
! CTAAAAGAGTTGTCTTTTTG+AGG + chr5_4:10293021-10293040 Msa0836680:intron 30.0%
TTGAGGTGACTACAATTATT+TGG + chr5_4:10293095-10293114 Msa0836680:intron 30.0%
! ATTGACATGAATGGATTTCT+TGG + chr5_4:10293301-10293320 Msa0836680:intron 30.0%
GTAATCTACAAAGCATAACA+AGG - chr5_4:10293554-10293573 None:intergenic 30.0%
!!! ATTTTTTGCAGCTTTTAGAC+AGG - chr5_4:10293617-10293636 None:intergenic 30.0%
ATTGAGAAACAAACATACCA+CGG - chr5_4:10293728-10293747 None:intergenic 30.0%
GATGATCACATAAGACATTA+AGG - chr5_4:10293803-10293822 None:intergenic 30.0%
GCTGAGAATTGAAATAATCT+AGG + chr5_4:10293897-10293916 Msa0836680:intron 30.0%
! CAAGTTACAAGTCAGTTTTT+AGG - chr5_4:10293991-10294010 None:intergenic 30.0%
!! AAACTGACTTGTAACTTGTA+AGG + chr5_4:10293993-10294012 Msa0836680:intron 30.0%
GCTAGTGAAAATTAGAAAAG+TGG - chr5_4:10294207-10294226 None:intergenic 30.0%
! CTTTTCTAATTTTCACTAGC+AGG + chr5_4:10294207-10294226 Msa0836680:intron 30.0%
CATAGTTATCATTCTTGATG+TGG + chr5_4:10294238-10294257 Msa0836680:intron 30.0%
AGCAAAGAGAGATTATTTAC+AGG + chr5_4:10294383-10294402 Msa0836680:three_prime_UTR 30.0%
TAATTCCAAAGATACTTGAC+TGG + chr5_4:10294439-10294458 Msa0836680:three_prime_UTR 30.0%
AAAAACCAGTCAAGTATCTT+TGG - chr5_4:10294447-10294466 None:intergenic 30.0%
AACCTGAAACTGAAATCATA+GGG - chr5_4:10294606-10294625 None:intergenic 30.0%
CAAGTAATGTTTCCTTTGAT+AGG + chr5_4:10294769-10294788 Msa0836680:three_prime_UTR 30.0%
! GCAGTAAGCATAGATTTTAT+AGG + chr5_4:10294863-10294882 Msa0836680:three_prime_UTR 30.0%
!!! TCATATTTTGATGCGATCAT+GGG - chr5_4:10294897-10294916 None:intergenic 30.0%
! GCTTGTGTAAAGTACCAATA+TGG - chr5_4:10290506-10290525 None:intergenic 35.0%
CATGGTGAAAACAAATGAGA+AGG - chr5_4:10290600-10290619 None:intergenic 35.0%
GCGGGAAAAAGAAGAAAAAA+TGG - chr5_4:10290663-10290682 None:intergenic 35.0%
TATAGTACAATTCATGGAGC+GGG - chr5_4:10290681-10290700 None:intergenic 35.0%
TTGATTGATTACCTGAAGAG+TGG - chr5_4:10290894-10290913 None:intergenic 35.0%
GAGAAACCAACAACCTTAAA+TGG - chr5_4:10291035-10291054 None:intergenic 35.0%
!!! TTTTTGTTGGTCTTACCCTT+CGG + chr5_4:10291063-10291082 Msa0836680:intron 35.0%
TGGAGATGATAAGTAAAGAC+TGG + chr5_4:10291112-10291131 Msa0836680:intron 35.0%
ACTACTTAAGTCTAACCACT+TGG + chr5_4:10291206-10291225 Msa0836680:intron 35.0%
AGCCTATATTCAAAACCAAG+TGG - chr5_4:10291224-10291243 None:intergenic 35.0%
GAGAAAGAAAGATAGAAGGA+AGG - chr5_4:10291424-10291443 None:intergenic 35.0%
AAGCAGGAAAAGATGGAAAA+AGG + chr5_4:10291499-10291518 Msa0836680:intron 35.0%
AGGAAAAGATGGAAAAAGGA+GGG + chr5_4:10291503-10291522 Msa0836680:intron 35.0%
!! TGCAGGTTGATAAGTTAAAG+AGG + chr5_4:10291683-10291702 Msa0836680:intron 35.0%
CTTAATCTACTTACATGGGA+AGG - chr5_4:10291799-10291818 None:intergenic 35.0%
AAGGTTGTGAATTTCAGACA+AGG + chr5_4:10292025-10292044 Msa0836680:CDS 35.0%
TTGATGTTTGGATCCTTTGA+TGG - chr5_4:10292125-10292144 None:intergenic 35.0%
TCAAAGGATCCAAACATCAA+AGG + chr5_4:10292125-10292144 Msa0836680:CDS 35.0%
TCTAGTAGAAAGCTAGTCAA+TGG + chr5_4:10292220-10292239 Msa0836680:CDS 35.0%
CTAGTAGAAAGCTAGTCAAT+GGG + chr5_4:10292221-10292240 Msa0836680:CDS 35.0%
!! TGAAGATAAGGAGTCTTGTT+TGG - chr5_4:10292260-10292279 None:intergenic 35.0%
! CTCTTCTGGTATTGAAGATA+AGG - chr5_4:10292272-10292291 None:intergenic 35.0%
! TCAACTGATTCTTGTTTGCT+TGG - chr5_4:10292346-10292365 None:intergenic 35.0%
TCCATATTCAAGGACAATCT+AGG + chr5_4:10292612-10292631 Msa0836680:three_prime_UTR 35.0%
TCCTAGATTGTCCTTGAATA+TGG - chr5_4:10292616-10292635 None:intergenic 35.0%
CTAATCTAAAAGACATGTCC+AGG + chr5_4:10292848-10292867 Msa0836680:intron 35.0%
! GACATGTCCAGGTTTTTATT+TGG + chr5_4:10292859-10292878 Msa0836680:intron 35.0%
ATTCACTACTTGTCACTACA+AGG + chr5_4:10292993-10293012 Msa0836680:intron 35.0%
TTACCTTGCCTAATATGTTG+AGG + chr5_4:10293078-10293097 Msa0836680:intron 35.0%
TGTAGTCACCTCAACATATT+AGG - chr5_4:10293089-10293108 None:intergenic 35.0%
! TTGTAGGCATATTTAGAGCA+TGG + chr5_4:10293123-10293142 Msa0836680:intron 35.0%
CAAAAGCTGAGAACATTAGA+GGG - chr5_4:10293202-10293221 None:intergenic 35.0%
ACAAAAGCTGAGAACATTAG+AGG - chr5_4:10293203-10293222 None:intergenic 35.0%
GAAGCAAAGATGAATTGAGA+AGG - chr5_4:10293273-10293292 None:intergenic 35.0%
CCATTCATGTCAATATGTGA+TGG - chr5_4:10293295-10293314 None:intergenic 35.0%
CCATCACATATTGACATGAA+TGG + chr5_4:10293292-10293311 Msa0836680:intron 35.0%
!! CATTCGAGTTGACTAAAACT+TGG + chr5_4:10293361-10293380 Msa0836680:intron 35.0%
!! AACTTGGTAATGTTTGTGAC+AGG + chr5_4:10293377-10293396 Msa0836680:intron 35.0%
AATGATGAGATGAAAGCAAG+AGG + chr5_4:10293634-10293653 Msa0836680:three_prime_UTR 35.0%
! ATGAAAGCAAGAGGCATATT+TGG + chr5_4:10293643-10293662 Msa0836680:three_prime_UTR 35.0%
GATAGTGCAAATGTAACCAA+AGG - chr5_4:10293685-10293704 None:intergenic 35.0%
GTTACATTTGCACTATCTTG+TGG + chr5_4:10293688-10293707 Msa0836680:three_prime_UTR 35.0%
TTGAGAAACAAACATACCAC+GGG - chr5_4:10293727-10293746 None:intergenic 35.0%
! TGTTTCAGGGTGTTATGTAA+TGG + chr5_4:10293868-10293887 Msa0836680:intron 35.0%
TTAGGTCATATCTCAAGTGA+AGG - chr5_4:10293973-10293992 None:intergenic 35.0%
!!! CTTATTTTGATCCTACAAGC+CGG + chr5_4:10294111-10294130 Msa0836680:intron 35.0%
CCTATGATACCAAACAAAAC+CGG - chr5_4:10294133-10294152 None:intergenic 35.0%
! AAGGCATTTGGTTGAATTGA+TGG + chr5_4:10294288-10294307 Msa0836680:intron 35.0%
! GTTTTTACTCGACTTTGCAA+AGG + chr5_4:10294461-10294480 Msa0836680:three_prime_UTR 35.0%
AAAGGACTTGGAATCTTTGT+TGG + chr5_4:10294479-10294498 Msa0836680:three_prime_UTR 35.0%
ACTTGGAATCTTTGTTGGAT+TGG + chr5_4:10294484-10294503 Msa0836680:three_prime_UTR 35.0%
CTTGGAATCTTTGTTGGATT+GGG + chr5_4:10294485-10294504 Msa0836680:three_prime_UTR 35.0%
AGTTGAATGCCTTGAAAGAA+GGG + chr5_4:10294545-10294564 Msa0836680:three_prime_UTR 35.0%
ATATGTACCATGTGTGAAAG+AGG - chr5_4:10294579-10294598 None:intergenic 35.0%
CAACCTGAAACTGAAATCAT+AGG - chr5_4:10294607-10294626 None:intergenic 35.0%
!!! ACCAGTAACCTGGTTTTTTT+TGG + chr5_4:10294634-10294653 Msa0836680:three_prime_UTR 35.0%
TCCAAAAAAAACCAGGTTAC+TGG - chr5_4:10294638-10294657 None:intergenic 35.0%
AAAGGTCAAAACCCTATCAA+AGG - chr5_4:10294784-10294803 None:intergenic 35.0%
GACCTTTGTAAACTGCAATA+AGG + chr5_4:10294797-10294816 Msa0836680:three_prime_UTR 35.0%
GACCTTATTGCAGTTTACAA+AGG - chr5_4:10294802-10294821 None:intergenic 35.0%
!!! CTCATATTTTGATGCGATCA+TGG - chr5_4:10294898-10294917 None:intergenic 35.0%
ACAAAAACAAAAAAGGGGGT+TGG + chr5_4:10294936-10294955 Msa0836680:three_prime_UTR 35.0%
GGACGATGTCTGTTTGTTTA+AGG - chr5_4:10290579-10290598 None:intergenic 40.0%
AGTCTAAACTTGCGTACTTG+TGG + chr5_4:10291155-10291174 Msa0836680:intron 40.0%
TCTCACTTAATGTGCAAAGC+AGG + chr5_4:10291483-10291502 Msa0836680:intron 40.0%
ATGTGCAAAGCAGGAAAAGA+TGG + chr5_4:10291492-10291511 Msa0836680:intron 40.0%
CAGGAAAAGATGGAAAAAGG+AGG + chr5_4:10291502-10291521 Msa0836680:intron 40.0%
! TTATGCTGCTTGAAGTTTGC+AGG + chr5_4:10291666-10291685 Msa0836680:intron 40.0%
! CATCGGGTCAATCGAATTTT+CGG - chr5_4:10292092-10292111 None:intergenic 40.0%
TTGATGGAATTCTGGTCCAT+CGG - chr5_4:10292109-10292128 None:intergenic 40.0%
ATGGACCAGAATTCCATCAA+AGG + chr5_4:10292109-10292128 Msa0836680:CDS 40.0%
TGGATCCTTTGATGGAATTC+TGG - chr5_4:10292117-10292136 None:intergenic 40.0%
! AAGAGAAATCTGAGGCCTAA+TGG - chr5_4:10292188-10292207 None:intergenic 40.0%
!! CTTTCTACTAGAAGCACTTC+TGG - chr5_4:10292212-10292231 None:intergenic 40.0%
! TTGCTTGGTGATTTCTTCAC+TGG - chr5_4:10292331-10292350 None:intergenic 40.0%
GACACCAAATAGAGTTTCAG+AGG + chr5_4:10292551-10292570 Msa0836680:three_prime_UTR 40.0%
! ACCAGGAGAAACTTGCATTT+TGG + chr5_4:10292917-10292936 Msa0836680:three_prime_UTR 40.0%
TCCAAAATGCAAGTTTCTCC+TGG - chr5_4:10292921-10292940 None:intergenic 40.0%
TCACCTCAACATATTAGGCA+AGG - chr5_4:10293084-10293103 None:intergenic 40.0%
ATCAGTGCTACAACCATTTC+AGG - chr5_4:10293162-10293181 None:intergenic 40.0%
! AGCAAGAGGCATATTTGGTT+TGG + chr5_4:10293648-10293667 Msa0836680:three_prime_UTR 40.0%
!! GAGGCATATTTGGTTTGGAA+TGG + chr5_4:10293653-10293672 Msa0836680:three_prime_UTR 40.0%
! TTTGGAATGGTCTGAACCTT+TGG + chr5_4:10293666-10293685 Msa0836680:three_prime_UTR 40.0%
TCTCAAGTGAAGGTGAGATT+TGG - chr5_4:10293963-10293982 None:intergenic 40.0%
!! AAATTTGTTATCGGGCCACT+CGG + chr5_4:10294064-10294083 Msa0836680:intron 40.0%
ATTATCCAGCAAGGTACAGT+AGG + chr5_4:10294087-10294106 Msa0836680:intron 40.0%
TTATCCAGCAAGGTACAGTA+GGG + chr5_4:10294088-10294107 Msa0836680:intron 40.0%
!!! CCGGTTTTGTTTGGTATCAT+AGG + chr5_4:10294130-10294149 Msa0836680:intron 40.0%
GATTATTTACAGGCAGCAGT+TGG + chr5_4:10294393-10294412 Msa0836680:three_prime_UTR 40.0%
CAGTTGAATGCCTTGAAAGA+AGG + chr5_4:10294544-10294563 Msa0836680:three_prime_UTR 40.0%
GTTGAATGCCTTGAAAGAAG+GGG + chr5_4:10294546-10294565 Msa0836680:three_prime_UTR 40.0%
TGCCCTATGATTTCAGTTTC+AGG + chr5_4:10294601-10294620 Msa0836680:three_prime_UTR 40.0%
GTGGTTGTCCAAAAAAAACC+AGG - chr5_4:10294645-10294664 None:intergenic 40.0%
ACCACAAATAATCCAGTGAG+AGG + chr5_4:10294660-10294679 Msa0836680:three_prime_UTR 40.0%
ACCTCTCACTGGATTATTTG+TGG - chr5_4:10294664-10294683 None:intergenic 40.0%
ATTACGAGAGTCCGATTCCT+CGG - chr5_4:10291091-10291110 None:intergenic 45.0%
GGAATCGGACTCTCGTAATT+TGG + chr5_4:10291092-10291111 Msa0836680:intron 45.0%
AAAAGGAGGGAGCAGGAAAA+TGG + chr5_4:10291516-10291535 Msa0836680:CDS 45.0%
!! TGAAAAAAGGGCGTCGAGAA+AGG + chr5_4:10291554-10291573 Msa0836680:CDS 45.0%
! AGAGCACTCACTAGACCTTT+AGG + chr5_4:10291745-10291764 Msa0836680:CDS 45.0%
CTTACATGGGAAGGGAGATA+AGG - chr5_4:10291790-10291809 None:intergenic 45.0%
GGTGGTTCGATTAGAAGAGA+AGG + chr5_4:10292006-10292025 Msa0836680:CDS 45.0%
CTGTCTACATTTCCTCCAAG+AGG + chr5_4:10292062-10292081 Msa0836680:CDS 45.0%
! ATTTTCGGCATTCCTCTTGG+AGG - chr5_4:10292077-10292096 None:intergenic 45.0%
! CGAATTTTCGGCATTCCTCT+TGG - chr5_4:10292080-10292099 None:intergenic 45.0%
CGAAAATTCGATTGACCCGA+TGG + chr5_4:10292090-10292109 Msa0836680:CDS 45.0%
TGATGGAATTCTGGTCCATC+GGG - chr5_4:10292108-10292127 None:intergenic 45.0%
CTTCTGGCAAGAGAAATCTG+AGG - chr5_4:10292196-10292215 None:intergenic 45.0%
ATACCATATGGATCACGTGG+AGG - chr5_4:10292651-10292670 None:intergenic 45.0%
CAGATACCATATGGATCACG+TGG - chr5_4:10292654-10292673 None:intergenic 45.0%
CATTCGGTTGAAATCAACGG+TGG - chr5_4:10292736-10292755 None:intergenic 45.0%
ACTTGCCTCTGTGAACTTGA+AGG + chr5_4:10292885-10292904 Msa0836680:three_prime_UTR 45.0%
CTTGCCTCTGTGAACTTGAA+GGG + chr5_4:10292886-10292905 Msa0836680:three_prime_UTR 45.0%
! AAGACCCTTCAAGTTCACAG+AGG - chr5_4:10292893-10292912 None:intergenic 45.0%
CATACCTGAGAGTCCTGAAA+TGG + chr5_4:10293146-10293165 Msa0836680:three_prime_UTR 45.0%
ACAACCATTTCAGGACTCTC+AGG - chr5_4:10293153-10293172 None:intergenic 45.0%
TGACAGGCCACAATAGTAGT+GGG + chr5_4:10293393-10293412 Msa0836680:intron 45.0%
! CTTTTAGACAGGTCTGTTGC+AGG - chr5_4:10293606-10293625 None:intergenic 45.0%
TTGCACTATCTTGTGGAAGC+TGG + chr5_4:10293695-10293714 Msa0836680:three_prime_UTR 45.0%
AAGCGCTAAGCATAACTGTG+TGG + chr5_4:10293927-10293946 Msa0836680:intron 45.0%
!!! TCCTACAAGCCGGTTTTGTT+TGG + chr5_4:10294121-10294140 Msa0836680:intron 45.0%
!! ACCAAACAAAACCGGCTTGT+AGG - chr5_4:10294125-10294144 None:intergenic 45.0%
ACTCGACTTTGCAAAGGACT+TGG + chr5_4:10294467-10294486 Msa0836680:three_prime_UTR 45.0%
TCAGTTCAACAGGTAGCTGA+AGG - chr5_4:10294515-10294534 None:intergenic 45.0%
GCTACCTGTTGAACTGAGAA+AGG + chr5_4:10294518-10294537 Msa0836680:three_prime_UTR 45.0%
GCTTCCTTTCTCAGTTCAAC+AGG - chr5_4:10294525-10294544 None:intergenic 45.0%
AATGCCTTGAAAGAAGGGGA+AGG + chr5_4:10294550-10294569 Msa0836680:three_prime_UTR 45.0%
TTGCTTGTACACCAGTAACC+TGG + chr5_4:10294624-10294643 Msa0836680:three_prime_UTR 45.0%
ACATTAACAGCACCTCTCAC+TGG - chr5_4:10294675-10294694 None:intergenic 45.0%
ATGCTTACTGCTAAGTGCGA+AGG - chr5_4:10294854-10294873 None:intergenic 45.0%
!! ACAAATAATAAAAAAAAATA+TGG - chr5_4:10290628-10290647 None:intergenic 5.0%
!!! TATATATTTTTATTTTATGA+AGG + chr5_4:10294317-10294336 Msa0836680:intron 5.0%
TTACGAGAGTCCGATTCCTC+GGG - chr5_4:10291090-10291109 None:intergenic 50.0%
AGATGGAAAAAGGAGGGAGC+AGG + chr5_4:10291509-10291528 Msa0836680:CDS 50.0%
!! AGGGCGTCGAGAAAGGAAAA+TGG + chr5_4:10291561-10291580 Msa0836680:CDS 50.0%
!! AGACGAGGAAGTGCTCCTAA+AGG - chr5_4:10291763-10291782 None:intergenic 50.0%
ACATGGGAAGGGAGATAAGG+AGG - chr5_4:10291787-10291806 None:intergenic 50.0%
AGAGCTTGTGGCTGAAGTTG+CGG + chr5_4:10291970-10291989 Msa0836680:CDS 50.0%
TGTGGCTGAAGTTGCGGTAT+TGG + chr5_4:10291976-10291995 Msa0836680:CDS 50.0%
! AGTTGCGGTATTGGAGGAAG+AGG + chr5_4:10291985-10292004 Msa0836680:CDS 50.0%
TGCAGATCACGTGAAGTTGC+AGG + chr5_4:10292372-10292391 Msa0836680:CDS 50.0%
ACACCTCCACGTGATCCATA+TGG + chr5_4:10292645-10292664 Msa0836680:three_prime_UTR 50.0%
TCGGTTGAAATCAACGGTGG+AGG - chr5_4:10292733-10292752 None:intergenic 50.0%
CTTGAAGGGTCTTACTCACC+AGG + chr5_4:10292900-10292919 Msa0836680:three_prime_UTR 50.0%
!! GGTTGTAGCACTGATGCAGA+AGG + chr5_4:10293167-10293186 Msa0836680:three_prime_UTR 50.0%
GTGACAGGCCACAATAGTAG+TGG + chr5_4:10293392-10293411 Msa0836680:intron 50.0%
GACAGGCCACAATAGTAGTG+GGG + chr5_4:10293394-10293413 Msa0836680:intron 50.0%
ACAGGCCACAATAGTAGTGG+GGG + chr5_4:10293395-10293414 Msa0836680:intron 50.0%
ACCTTGCTGGATAATCCGAG+TGG - chr5_4:10294082-10294101 None:intergenic 50.0%
TAAGCCCTACTGTACCTTGC+TGG - chr5_4:10294095-10294114 None:intergenic 50.0%
AAGGCAGCCTCTTTCACACA+TGG + chr5_4:10294569-10294588 Msa0836680:three_prime_UTR 50.0%
CAGAGCACACACCACTCTTC+AGG + chr5_4:10290880-10290899 Msa0836680:CDS 55.0%
GGGAGATAAGGAGGAAGACG+AGG - chr5_4:10291778-10291797 None:intergenic 55.0%
! GGCTGAAGTTGCGGTATTGG+AGG + chr5_4:10291979-10291998 Msa0836680:CDS 55.0%
! TGCGGTATTGGAGGAAGAGG+TGG + chr5_4:10291988-10292007 Msa0836680:CDS 55.0%
! CAGGCCACAATAGTAGTGGG+GGG + chr5_4:10293396-10293415 Msa0836680:intron 55.0%
GTGTCCCCCCACTACTATTG+TGG - chr5_4:10293403-10293422 None:intergenic 55.0%
GCCACTCGGATTATCCAGCA+AGG + chr5_4:10294078-10294097 Msa0836680:intron 55.0%
GCTGCCTTCCCCTTCTTTCA+AGG - chr5_4:10294557-10294576 None:intergenic 55.0%
ACCCTTCGGTCCCGAGGAAT+CGG + chr5_4:10291077-10291096 Msa0836680:intron 60.0%
TCCGATTCCTCGGGACCGAA+GGG - chr5_4:10291081-10291100 None:intergenic 60.0%
AGTGGGGGGACACTTGCTCA+AGG + chr5_4:10293410-10293429 Msa0836680:three_prime_UTR 60.0%
TGGAAGCTGGTCATCACCCG+TGG + chr5_4:10293708-10293727 Msa0836680:three_prime_UTR 60.0%
GGTCTTACCCTTCGGTCCCG+AGG + chr5_4:10291071-10291090 Msa0836680:intron 65.0%
GTCCGATTCCTCGGGACCGA+AGG - chr5_4:10291082-10291101 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 10290496 10294960 10290496 ID=Msa0836680;Name=Msa0836680
chr5_4 mRNA 10290496 10294960 10290496 ID=Msa0836680-mRNA-1;Parent=Msa0836680;Name=Msa0836680-mRNA-1;_AED=0.15;_eAED=0.15;_QI=376|0.77|0.9|0.9|0.66|0.6|10|1356|232
chr5_4 exon 10290496 10290901 10290496 ID=Msa0836680-mRNA-1:exon:4510;Parent=Msa0836680-mRNA-1
chr5_4 exon 10291505 10291597 10291505 ID=Msa0836680-mRNA-1:exon:4511;Parent=Msa0836680-mRNA-1
chr5_4 exon 10291688 10291804 10291688 ID=Msa0836680-mRNA-1:exon:4512;Parent=Msa0836680-mRNA-1
chr5_4 exon 10291926 10291934 10291926 ID=Msa0836680-mRNA-1:exon:4513;Parent=Msa0836680-mRNA-1
chr5_4 exon 10291965 10292787 10291965 ID=Msa0836680-mRNA-1:exon:4514;Parent=Msa0836680-mRNA-1
chr5_4 exon 10292870 10292969 10292870 ID=Msa0836680-mRNA-1:exon:4515;Parent=Msa0836680-mRNA-1
chr5_4 exon 10293129 10293188 10293129 ID=Msa0836680-mRNA-1:exon:4516;Parent=Msa0836680-mRNA-1
chr5_4 exon 10293399 10293482 10293399 ID=Msa0836680-mRNA-1:exon:4517;Parent=Msa0836680-mRNA-1
chr5_4 exon 10293613 10293729 10293613 ID=Msa0836680-mRNA-1:exon:4518;Parent=Msa0836680-mRNA-1
chr5_4 exon 10294339 10294960 10294339 ID=Msa0836680-mRNA-1:exon:4519;Parent=Msa0836680-mRNA-1
chr5_4 five_prime_UTR 10290496 10290871 10290496 ID=Msa0836680-mRNA-1:five_prime_utr;Parent=Msa0836680-mRNA-1
chr5_4 CDS 10290872 10290901 10290872 ID=Msa0836680-mRNA-1:cds;Parent=Msa0836680-mRNA-1
chr5_4 CDS 10291505 10291597 10291505 ID=Msa0836680-mRNA-1:cds;Parent=Msa0836680-mRNA-1
chr5_4 CDS 10291688 10291804 10291688 ID=Msa0836680-mRNA-1:cds;Parent=Msa0836680-mRNA-1
chr5_4 CDS 10291926 10291934 10291926 ID=Msa0836680-mRNA-1:cds;Parent=Msa0836680-mRNA-1
chr5_4 CDS 10291965 10292414 10291965 ID=Msa0836680-mRNA-1:cds;Parent=Msa0836680-mRNA-1
chr5_4 three_prime_UTR 10292415 10292787 10292415 ID=Msa0836680-mRNA-1:three_prime_utr;Parent=Msa0836680-mRNA-1
chr5_4 three_prime_UTR 10292870 10292969 10292870 ID=Msa0836680-mRNA-1:three_prime_utr;Parent=Msa0836680-mRNA-1
chr5_4 three_prime_UTR 10293129 10293188 10293129 ID=Msa0836680-mRNA-1:three_prime_utr;Parent=Msa0836680-mRNA-1
chr5_4 three_prime_UTR 10293399 10293482 10293399 ID=Msa0836680-mRNA-1:three_prime_utr;Parent=Msa0836680-mRNA-1
chr5_4 three_prime_UTR 10293613 10293729 10293613 ID=Msa0836680-mRNA-1:three_prime_utr;Parent=Msa0836680-mRNA-1
chr5_4 three_prime_UTR 10294339 10294960 10294339 ID=Msa0836680-mRNA-1:three_prime_utr;Parent=Msa0836680-mRNA-1
Gene Sequence

>Msa0836680

ATGAGTAGCAGAGCACACACCACTCTTCAGGAAAAGATGGAAAAAGGAGGGAGCAGGAAAATGGCTGCACATAATACTTTGAAAAAAGGGCGTCGAGAAAGGAAAATGGCTTTGATACAAGATGTTGATAAGTTAAAGAGGAAGCTAAGACATGAAGAGAATGTTCATAGAGTGTTAGAAAGAGCACTCACTAGACCTTTAGGAGCACTTCCTCGTCTTCCTCCTTATCTCCCTTCCCATATATCGAAAACATTAGAGCTTGTGGCTGAAGTTGCGGTATTGGAGGAAGAGGTGGTTCGATTAGAAGAGAAGGTTGTGAATTTCAGACAAGGTTTATATCAGGAAGCTGTCTACATTTCCTCCAAGAGGAATGCCGAAAATTCGATTGACCCGATGGACCAGAATTCCATCAAAGGATCCAAACATCAAAGGTCAAAATCATTGTCTCAAAGTGAGCTTAATTCTACAACCATTAGGCCTCAGATTTCTCTTGCCAGAAGTGCTTCTAGTAGAAAGCTAGTCAATGGGAAGCAATTGCATTCCAAACAAGACTCCTTATCTTCAATACCAGAAGAGAAATCTATTGAAAAGAAAATGGCTAAAGTCATCACTCCAGTGAAGAAATCACCAAGCAAACAAGAATCAGTTGACAAGTGTGCAGATCACGTGAAGTTGCAGGTACTTAACAATTTCCAATAA
Protein sequence

>Msa0836680

MSSRAHTTLQEKMEKGGSRKMAAHNTLKKGRRERKMALIQDVDKLKRKLRHEENVHRVLERALTRPLGALPRLPPYLPSHISKTLELVAEVAVLEEEVVRLEEKVVNFRQGLYQEAVYISSKRNAENSIDPMDQNSIKGSKHQRSKSLSQSELNSTTIRPQISLARSASSRKLVNGKQLHSKQDSLSSIPEEKSIEKKMAKVITPVKKSPSKQESVDKCADHVKLQVLNNFQ*